Title: Risk Tool Library - Trading, Risk, Analytic for Commodities
Description: Collection of functions and metadata to complement core packages
in Finance and Commodities, including futures expiry tables and <https://www.morningstar.com/products/commodities-and-energy>
API functions. See <https://github.com/risktoollib/RTL>.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut],
Mikel Buchinski [ctb],
Joe Rikk [ctb],
Gabriela Sanchez [ctb],
Usman Farooq [ctb]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 0.1.7 dated 2021-06-12 and 0.1.8 dated 2021-09-21
RTL-0.1.7/RTL/data/df_fut.rda |only RTL-0.1.7/RTL/man/df_fut.Rd |only RTL-0.1.8/RTL/DESCRIPTION | 10 +-- RTL-0.1.8/RTL/MD5 | 86 +++++++++++++++-------------- RTL-0.1.8/RTL/NEWS.md | 15 +++-- RTL-0.1.8/RTL/R/chart_PerfSummary.R | 5 - RTL-0.1.8/RTL/R/data.R | 36 ++++++++++-- RTL-0.1.8/RTL/R/distdescplot.R | 5 - RTL-0.1.8/RTL/R/eia2tidy.R | 6 +- RTL-0.1.8/RTL/R/genscape.R | 7 +- RTL-0.1.8/RTL/R/getGIS.R | 2 RTL-0.1.8/RTL/R/globals.R | 4 - RTL-0.1.8/RTL/R/morningstar.R | 46 +++++++++++---- RTL-0.1.8/RTL/R/returns.R | 4 - RTL-0.1.8/RTL/R/rolladjust.R | 23 +++---- RTL-0.1.8/RTL/R/tradeStats.R | 4 - RTL-0.1.8/RTL/data/cancrudeassays.rda |binary RTL-0.1.8/RTL/data/cancrudeassayssum.rda |binary RTL-0.1.8/RTL/data/cancrudeprices.rda |binary RTL-0.1.8/RTL/data/crudeassaysBP.rda |binary RTL-0.1.8/RTL/data/crudeassaysXOM.rda |binary RTL-0.1.8/RTL/data/crudes.rda |binary RTL-0.1.8/RTL/data/dflong.rda |binary RTL-0.1.8/RTL/data/dfwide.rda |binary RTL-0.1.8/RTL/data/eiaStocks.rda |binary RTL-0.1.8/RTL/data/eiaStorageCap.rda |binary RTL-0.1.8/RTL/data/eurodollar.rda |only RTL-0.1.8/RTL/data/fizdiffs.rda |binary RTL-0.1.8/RTL/data/fxfwd.rda |only RTL-0.1.8/RTL/data/holidaysOil.rda |binary RTL-0.1.8/RTL/data/planets.rda |binary RTL-0.1.8/RTL/data/spot2futConvergence.rda |only RTL-0.1.8/RTL/data/spot2futCurve.rda |only RTL-0.1.8/RTL/data/tradeCycle.rda |binary RTL-0.1.8/RTL/data/wtiSwap.rda |only RTL-0.1.8/RTL/man/chart_PerfSummary.Rd | 5 - RTL-0.1.8/RTL/man/distdescplot.Rd | 5 - RTL-0.1.8/RTL/man/eia2tidy.Rd | 6 +- RTL-0.1.8/RTL/man/eurodollar.Rd |only RTL-0.1.8/RTL/man/fxfwd.Rd |only RTL-0.1.8/RTL/man/getCurve.Rd | 4 + RTL-0.1.8/RTL/man/getGIS.Rd | 2 RTL-0.1.8/RTL/man/getGenscapeStorageOil.Rd | 5 + RTL-0.1.8/RTL/man/getPrice.Rd | 2 RTL-0.1.8/RTL/man/returns.Rd | 4 - RTL-0.1.8/RTL/man/rolladjust.Rd | 5 - RTL-0.1.8/RTL/man/spot2futConvergence.Rd |only RTL-0.1.8/RTL/man/spot2futCurve.Rd |only RTL-0.1.8/RTL/man/tradeStats.Rd | 2 RTL-0.1.8/RTL/man/wtiSwap.Rd |only 50 files changed, 176 insertions(+), 117 deletions(-)
Title: Rcpp Machine Learning Library
Description: Fast machine learning algorithms including matrix factorization
and divisive clustering for large sparse and dense matrices.
Author: Zachary DeBruine [aut, cre] (<https://orcid.org/0000-0003-2234-4827>)
Maintainer: Zachary DeBruine <zacharydebruine@gmail.com>
Diff between RcppML versions 0.3.5 dated 2021-09-02 and 0.3.7 dated 2021-09-21
DESCRIPTION | 13 MD5 | 43 +- R/RcppExports.R | 457 ++----------------------- R/RcppML.R |only R/bipartition.R |only R/dclust.R |only R/mse.R |only R/nmf.R |only R/project.R |only R/threads.R |only inst/doc/RcppML.html | 9 inst/include/RcppML/SparseMatrix.hpp | 15 inst/include/RcppML/bipartition.hpp | 6 inst/include/RcppML/nmf.hpp | 18 - inst/include/RcppML/project.hpp | 11 man/RcppML.Rd | 2 man/bipartition.Rd | 156 ++++---- man/dclust.Rd | 184 +++++----- man/getRcppMLthreads.Rd | 64 +-- man/mse.Rd | 98 ++--- man/nmf.Rd | 333 +++++++++--------- man/nnls.Rd | 188 +++++----- man/project.Rd | 168 ++++----- man/setRcppMLthreads.Rd | 70 +-- src/RcppExports.cpp | 196 ++++++++--- src/RcppFunctions.cpp | 621 ++++++----------------------------- 26 files changed, 983 insertions(+), 1669 deletions(-)
Title: Tools for Matrix Algebra, Optimization and Inference
Description: Matrix is an universal and sometimes primary object/unit in applied mathematics and statistics. We provide a number of algorithms for selected problems in optimization and statistical inference. For general exposition to the topic with focus on statistical context, see the book by Banerjee and Roy (2014, ISBN:9781420095388).
Author: Kisung You [aut, cre] (<https://orcid.org/0000-0002-8584-459X>)
Maintainer: Kisung You <kisungyou@outlook.com>
Diff between maotai versions 0.2.0 dated 2021-06-09 and 0.2.1 dated 2021-09-21
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/RcppExports.R | 4 ++++ R/aux_hiddenR.R | 20 +++++++++++++++++++- build/partial.rdb |binary src/RcppExports.cpp | 18 ++++++++++++++++++ src/src_computations.cpp |only 8 files changed, 56 insertions(+), 11 deletions(-)
Title: Arbitrary-Precision Integer and Floating-Point Mathematics
Description: Classes for storing and manipulating arbitrary-precision
integer vectors and high-precision floating-point vectors. These
extend the range and precision of the 'integer' and 'double' data
types found in R. This package utilizes the 'Boost.Multiprecision' C++
library. It is specifically designed to work well with the 'tidyverse'
collection of R packages.
Author: David Hall [aut, cre, cph] (<https://orcid.org/0000-0002-2193-0480>)
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between bignum versions 0.2.1 dated 2021-06-17 and 0.2.2 dated 2021-09-21
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------ NEWS.md | 4 +++ build/vignette.rds |binary inst/doc/operations.html | 7 ++---- inst/doc/precision.html | 26 +++++++++-------------- inst/doc/type-hierarchy.html | 44 +++++++++++++++++++-------------------- tests/testthat/test-biginteger.R | 6 ++--- 8 files changed, 53 insertions(+), 54 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Description: As a pipeline toolkit for Statistics and data science in R,
the 'targets' package brings together function-oriented programming and
'Make'-like declarative workflows.
It analyzes the dependency relationships among the tasks of a workflow,
skips steps that are already up to date, runs the necessary
computation with optional parallel workers, abstracts files as
R objects, and provides tangible evidence that the results match
the underlying code and data. The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Matthew T. Warkentin [ctb],
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.7.0 dated 2021-08-19 and 0.8.0 dated 2021-09-21
targets-0.7.0/targets/R/utils_onload.R |only targets-0.8.0/targets/DESCRIPTION | 23 - targets-0.8.0/targets/MD5 | 176 +++++----- targets-0.8.0/targets/NAMESPACE | 29 + targets-0.8.0/targets/NEWS.md | 22 + targets-0.8.0/targets/R/class_aws.R | 33 - targets-0.8.0/targets/R/class_aws_feather.R | 1 targets-0.8.0/targets/R/class_aws_file.R | 15 targets-0.8.0/targets/R/class_aws_fst.R | 9 targets-0.8.0/targets/R/class_aws_fst_dt.R | 1 targets-0.8.0/targets/R/class_aws_fst_tbl.R | 1 targets-0.8.0/targets/R/class_aws_keras.R | 9 targets-0.8.0/targets/R/class_aws_parquet.R | 9 targets-0.8.0/targets/R/class_aws_qs.R | 9 targets-0.8.0/targets/R/class_aws_rds.R | 9 targets-0.8.0/targets/R/class_aws_torch.R | 9 targets-0.8.0/targets/R/class_builder.R | 16 targets-0.8.0/targets/R/class_cloud.R |only targets-0.8.0/targets/R/class_feather.R | 12 targets-0.8.0/targets/R/class_frames.R | 7 targets-0.8.0/targets/R/class_imports.R | 2 targets-0.8.0/targets/R/class_memory.R | 2 targets-0.8.0/targets/R/class_options.R | 4 targets-0.8.0/targets/R/class_parquet.R | 12 targets-0.8.0/targets/R/class_store.R | 49 ++ targets-0.8.0/targets/R/class_store_file.R | 24 + targets-0.8.0/targets/R/class_url.R | 4 targets-0.8.0/targets/R/tar_config_get.R | 90 ++++- targets-0.8.0/targets/R/tar_config_set.R | 142 ++++++-- targets-0.8.0/targets/R/tar_config_unset.R |only targets-0.8.0/targets/R/tar_definition.R |only targets-0.8.0/targets/R/tar_engine_knitr.R | 1 targets-0.8.0/targets/R/tar_envir.R | 8 targets-0.8.0/targets/R/tar_envvars.R | 9 targets-0.8.0/targets/R/tar_older.R | 2 targets-0.8.0/targets/R/tar_package.R | 1 targets-0.8.0/targets/R/tar_path.R | 42 +- targets-0.8.0/targets/R/tar_resources_future.R | 6 targets-0.8.0/targets/R/tar_target.R | 59 +++ targets-0.8.0/targets/R/tar_target_raw.R | 6 targets-0.8.0/targets/R/tar_timestamp.R | 16 targets-0.8.0/targets/R/tar_watch.R | 8 targets-0.8.0/targets/R/tar_watch_server.R | 57 ++- targets-0.8.0/targets/R/utils_imports.R | 8 targets-0.8.0/targets/build/partial.rdb |binary targets-0.8.0/targets/inst/WORDLIST | 2 targets-0.8.0/targets/inst/doc/overview.Rmd | 16 targets-0.8.0/targets/inst/doc/overview.html | 18 - targets-0.8.0/targets/inst/pipelines/_targets_r.R | 30 + targets-0.8.0/targets/inst/rmarkdown/templates/targets/skeleton/skeleton.Rmd | 5 targets-0.8.0/targets/man/tar_cancel.Rd | 1 targets-0.8.0/targets/man/tar_config_get.Rd | 84 +++- targets-0.8.0/targets/man/tar_config_set.Rd | 118 +++++- targets-0.8.0/targets/man/tar_config_unset.Rd |only targets-0.8.0/targets/man/tar_definition.Rd |only targets-0.8.0/targets/man/tar_envir.Rd | 9 targets-0.8.0/targets/man/tar_envvars.Rd | 15 targets-0.8.0/targets/man/tar_group.Rd | 1 targets-0.8.0/targets/man/tar_load_globals.Rd | 4 targets-0.8.0/targets/man/tar_name.Rd | 1 targets-0.8.0/targets/man/tar_older.Rd | 2 targets-0.8.0/targets/man/tar_option_get.Rd | 1 targets-0.8.0/targets/man/tar_option_reset.Rd | 1 targets-0.8.0/targets/man/tar_option_set.Rd | 47 ++ targets-0.8.0/targets/man/tar_path.Rd | 37 +- targets-0.8.0/targets/man/tar_resources_future.Rd | 6 targets-0.8.0/targets/man/tar_seed.Rd | 1 targets-0.8.0/targets/man/tar_target.Rd | 64 +++ targets-0.8.0/targets/man/tar_target_raw.Rd | 65 +++ targets-0.8.0/targets/man/tar_timestamp.Rd | 16 targets-0.8.0/targets/man/tar_watch.Rd | 33 + targets-0.8.0/targets/man/tar_watch_server.Rd | 33 + targets-0.8.0/targets/tests/aws/test-class_aws_file.R | 2 targets-0.8.0/targets/tests/aws/test-class_aws_qs.R | 54 ++- targets-0.8.0/targets/tests/aws/test-prefix.R | 4 targets-0.8.0/targets/tests/hpc/test-future_sge.R | 32 + targets-0.8.0/targets/tests/testthat/test-class_build.R | 4 targets-0.8.0/targets/tests/testthat/test-class_builder.R | 80 ++++ targets-0.8.0/targets/tests/testthat/test-class_feather.R | 1 targets-0.8.0/targets/tests/testthat/test-class_frames.R | 4 targets-0.8.0/targets/tests/testthat/test-class_fst.R | 1 targets-0.8.0/targets/tests/testthat/test-class_fst_dt.R | 1 targets-0.8.0/targets/tests/testthat/test-class_fst_tbl.R | 2 targets-0.8.0/targets/tests/testthat/test-class_parquet.R | 1 targets-0.8.0/targets/tests/testthat/test-class_qs.R | 1 targets-0.8.0/targets/tests/testthat/test-class_rds.R | 1 targets-0.8.0/targets/tests/testthat/test-class_url.R | 2 targets-0.8.0/targets/tests/testthat/test-tar_config_set.R | 126 +++++++ targets-0.8.0/targets/tests/testthat/test-tar_config_unset.R |only targets-0.8.0/targets/tests/testthat/test-tar_definition.R |only targets-0.8.0/targets/tests/testthat/test-tar_load.R | 2 targets-0.8.0/targets/tests/testthat/test-tar_path.R | 36 ++ targets-0.8.0/targets/vignettes/overview.Rmd | 16 93 files changed, 1535 insertions(+), 387 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative workflows for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible workflows concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between tarchetypes versions 0.3.0 dated 2021-08-04 and 0.3.1 dated 2021-09-21
DESCRIPTION | 6 ++-- MD5 | 68 +++++++++++++++++++++++----------------------- NEWS.md | 5 +++ R/tar_age.R | 8 ++--- R/tar_cue_age.R | 7 ++-- R/tar_cue_age_raw.R | 7 ++-- R/tar_map.R | 19 ------------ R/utils_language.R | 1 inst/WORDLIST | 2 + man/tar_age.Rd | 54 ++++++++++++++++++++++++++++++------ man/tar_change.Rd | 46 +++++++++++++++++++++++++++---- man/tar_combine.Rd | 46 +++++++++++++++++++++++++++---- man/tar_combine_raw.Rd | 46 +++++++++++++++++++++++++++---- man/tar_cue_age.Rd | 9 ++---- man/tar_cue_age_raw.Rd | 9 ++---- man/tar_download.Rd | 46 +++++++++++++++++++++++++++---- man/tar_files.Rd | 46 +++++++++++++++++++++++++++---- man/tar_files_raw.Rd | 46 +++++++++++++++++++++++++++---- man/tar_force.Rd | 46 +++++++++++++++++++++++++++---- man/tar_formats.Rd | 46 +++++++++++++++++++++++++++---- man/tar_group_by.Rd | 46 +++++++++++++++++++++++++++---- man/tar_group_count.Rd | 46 +++++++++++++++++++++++++++---- man/tar_group_select.Rd | 46 +++++++++++++++++++++++++++---- man/tar_group_size.Rd | 46 +++++++++++++++++++++++++++---- man/tar_knit.Rd | 11 ++++++- man/tar_knit_raw.Rd | 11 ++++++- man/tar_render.Rd | 11 ++++++- man/tar_render_raw.Rd | 11 ++++++- man/tar_render_rep.Rd | 11 ++++++- man/tar_render_rep_raw.Rd | 11 ++++++- man/tar_rep.Rd | 46 +++++++++++++++++++++++++++---- man/tar_rep_map.Rd | 46 +++++++++++++++++++++++++++---- man/tar_rep_map_raw.Rd | 46 +++++++++++++++++++++++++++---- man/tar_rep_raw.Rd | 46 +++++++++++++++++++++++++++---- man/tar_skip.Rd | 46 +++++++++++++++++++++++++++---- 35 files changed, 858 insertions(+), 185 deletions(-)
Title: Metabolomics and Spectral Data Analysis and Mining
Description: Provides a set of methods for metabolomics
data analysis, including data loading in different formats,
pre-processing, metabolite identification, univariate and multivariate
data analysis, machine learning, feature selection and pathway analysis. Case studies
can be found on the website: <http://bio.di.uminho.pt/metabolomicspackage/index.html>.
This package suggests 'rcytoscapejs', a package not in mainstream repositories. If you need to install it,
use: devtools::install_github('cytoscape/r-cytoscape.js@v0.0.7').
Author: Christopher Costa <chrisbcl@hotmail.com> [aut],
Marcelo Maraschin <mtocsy@gmail.com> [aut],
Miguel Rocha <mrocha@di.uminho.pt> [aut, cre],
Sara Cardoso <saracardoso501@gmail.com> [aut],
Telma Afonso <telma.afonso94@gmail.com> [aut],
Bruno Pereira <pereirinha_bp@hotmail.com> [aut],
C. Beleites [cph],
Jie Hao [cph],
Maintainer: Miguel Rocha <mrocha@di.uminho.pt>
Diff between specmine versions 3.1.5 dated 2021-05-16 and 3.1.6 dated 2021-09-21
DESCRIPTION | 8 MD5 | 492 ++++---- NAMESPACE | 424 +++--- R/MAIT_metabolite_identification.R | 300 ++-- R/NMR_metabolite_identification.R | 1042 ++++++++--------- R/PATHWAY_ANALYSIS.R | 928 +++++++-------- R/clustering.R | 256 ++-- R/convert_chemospec.R | 30 R/data_integration.R | 64 - R/feature_selection.R | 100 - R/filter_dataset.R | 484 +++---- R/filters_flat.R | 178 +- R/get_metabolights_study.R | 322 ++--- R/graphics.R | 786 ++++++------ R/init.R | 2 R/machinelearning.R | 486 ++++---- R/missing_values.R | 180 +- R/ms_functions.R | 128 +- R/nmr_id_utils.R | 124 +- R/normalization.R | 378 +++--- R/pca.R | 930 +++++++-------- R/peak_alignment.R | 630 +++++----- R/peaklists.R | 424 +++--- R/preprocessing.R | 714 +++++------ R/read.spc.modifed.R | 1610 +++++++++++++------------- R/read_NMR_spectra.R | 1640 +++++++++++++-------------- R/read_dx.R | 242 +-- R/read_spc.R | 100 - R/reading_data.R | 106 - R/regression.R | 174 +- R/stats.R | 148 +- R/structure.R | 1266 ++++++++++---------- R/univariate.R | 962 +++++++-------- R/utils.R | 56 README.md | 88 - build/vignette.rds |binary inst/doc/dataset_2d_analysis.R | 154 +- inst/doc/dataset_2d_analysis.Rmd | 323 ++--- inst/doc/dataset_2d_analysis.html | 483 ++++--- inst/read_varian_2dspec_raw.py | 274 ++-- inst/read_varian_spec_raw.py | 142 +- man/MAIT_identify_metabolites.Rd | 108 - man/absorbance_to_transmittance.Rd | 54 man/aggregate_samples.Rd | 90 - man/aov_all_vars.Rd | 98 - man/apply_by_group.Rd | 86 - man/apply_by_groups.Rd | 92 - man/apply_by_sample.Rd | 88 - man/apply_by_variable.Rd | 102 - man/background_correction.Rd | 66 - man/baseline_correction.Rd | 88 - man/boxplot_variables.Rd | 104 - man/boxplot_vars_factor.Rd | 126 +- man/check_2d_dataset.Rd | 60 man/check_dataset.Rd | 66 - man/clustering.Rd | 114 - man/compare_regions_by_sample.Rd | 98 - man/convert_chebi_to_kegg.Rd | 48 man/convert_from_chemospec.Rd | 68 - man/convert_hmdb_to_kegg.Rd | 50 man/convert_keggpathway_2_reactiongraph.Rd | 38 man/convert_multiple_spcmnm_to_kegg.Rd | 44 man/convert_to_factor.Rd | 60 man/correlation_test.Rd | 100 - man/correlations_dataset.Rd | 86 - man/correlations_test.Rd | 92 - man/count_missing_values.Rd | 64 - man/count_missing_values_per_sample.Rd | 72 - man/count_missing_values_per_variable.Rd | 72 - man/create_2d_dataset.Rd | 180 +- man/create_dataset.Rd | 144 +- man/create_pathway_with_reactions.Rd | 54 man/cubic_root_transform.Rd | 68 - man/data_correction.Rd | 74 - man/dataset_from_peaks.Rd | 92 - man/dendrogram_plot.Rd | 92 - man/dendrogram_plot_col.Rd | 114 - man/detect_nmr_peaks_from_dataset.Rd | 50 man/feature_selection.Rd | 132 +- man/filter_feature_selection.Rd | 102 - man/find_equal_samples.Rd | 66 - man/first_derivative.Rd | 54 man/flat_pattern_filter.Rd | 108 - man/fold_change.Rd | 102 - man/fold_change_var.Rd | 102 - man/get_MetabolitePath.Rd | 38 man/get_OrganismsCodes.Rd | 40 man/get_cpd_names.Rd | 52 man/get_data.Rd | 66 - man/get_data_as_df.Rd | 66 - man/get_data_value.Rd | 86 - man/get_data_values.Rd | 80 - man/get_files_list_assay.Rd | 49 man/get_metabPaths_org.Rd | 32 man/get_metabolights_study.Rd | 66 - man/get_metabolights_study_files_assay.Rd | 71 - man/get_metabolights_study_metadata_assay.Rd | 59 man/get_metabolights_study_samples_files.Rd | 48 man/get_metadata.Rd | 64 - man/get_metadata_value.Rd | 78 - man/get_metadata_var.Rd | 72 - man/get_paths_with_cpds_org.Rd | 66 - man/get_peak_values.Rd | 72 - man/get_sample_2d_data.Rd | 64 - man/get_sample_names.Rd | 66 - man/get_samples_names_dx.Rd | 54 man/get_samples_names_spc.Rd | 54 man/get_type.Rd | 66 - man/get_value_label.Rd | 68 - man/get_x_label.Rd | 66 - man/get_x_values_as_num.Rd | 66 - man/get_x_values_as_text.Rd | 68 - man/group_peaks.Rd | 126 +- man/heatmap_correlations.Rd | 76 - man/hierarchical_clustering.Rd | 90 - man/impute_nas_knn.Rd | 78 - man/impute_nas_linapprox.Rd | 68 - man/impute_nas_mean.Rd | 66 - man/impute_nas_median.Rd | 66 - man/impute_nas_value.Rd | 74 - man/indexes_to_xvalue_interval.Rd | 72 - man/is_spectra.Rd | 66 - man/kmeans_clustering.Rd | 80 - man/kmeans_plot.Rd | 72 - man/kmeans_result_df.Rd | 70 - man/kruskalTest_dataset.Rd | 94 - man/ksTest_dataset.Rd | 94 - man/linreg_all_vars.Rd | 66 - man/linreg_coef_table.Rd | 68 - man/linreg_pvalue_table.Rd | 68 - man/linreg_rsquared.Rd | 68 - man/linregression_onevar.Rd | 72 - man/log_transform.Rd | 68 - man/low_level_fusion.Rd | 54 man/mean_centering.Rd | 54 man/merge_data_metadata.Rd | 92 - man/merge_datasets.Rd | 60 man/metabolights_studies_list.Rd | 42 man/metadata_as_variables.Rd | 78 - man/missingvalues_imputation.Rd | 100 - man/msc_correction.Rd | 56 man/multiClassSummary.Rd | 66 - man/multifactor_aov_all_vars.Rd | 82 - man/multifactor_aov_pvalues_table.Rd | 86 - man/multifactor_aov_varexp_table.Rd | 86 - man/multiplot.Rd | 102 - man/nmr_identification.Rd | 162 +- man/normalize.Rd | 84 - man/normalize_samples.Rd | 84 - man/num_samples.Rd | 66 - man/num_x_values.Rd | 66 - man/offset_correction.Rd | 56 man/pathway_analysis.Rd | 80 - man/pca_analysis_dataset.Rd | 98 - man/pca_biplot.Rd | 104 - man/pca_biplot3D.Rd | 84 - man/pca_importance.Rd | 100 - man/pca_kmeans_plot2D.Rd | 128 +- man/pca_kmeans_plot3D.Rd | 112 - man/pca_pairs_kmeans_plot.Rd | 94 - man/pca_pairs_plot.Rd | 86 - man/pca_plot_3d.Rd | 104 - man/pca_robust.Rd | 106 - man/pca_scoresplot2D.Rd | 126 +- man/pca_scoresplot3D.Rd | 84 - man/pca_scoresplot3D_rgl.Rd | 100 - man/pca_screeplot.Rd | 114 - man/peak_detection2d.Rd | 98 - man/peaks_per_sample.Rd | 72 - man/peaks_per_samples.Rd | 66 - man/plot_2d_spectra.Rd | 76 - man/plot_anova.Rd | 92 - man/plot_fold_change.Rd | 94 - man/plot_kruskaltest.Rd | 78 - man/plot_kstest.Rd | 78 - man/plot_peaks.Rd | 110 - man/plot_regression_coefs_pvalues.Rd | 66 - man/plot_spectra.Rd | 114 - man/plot_spectra_simple.Rd | 102 - man/plot_ttests.Rd | 76 - man/plotvar_twofactor.Rd | 112 - man/predict_samples.Rd | 80 - man/read-spc.Rd | 150 +- man/read_Bruker_files.Rd | 86 - man/read_Bruker_files_2d.Rd | 178 +- man/read_csvs_folder.Rd | 60 man/read_data_csv.Rd | 80 - man/read_data_dx.Rd | 60 man/read_data_spc.Rd | 60 man/read_dataset_csv.Rd | 140 +- man/read_dataset_dx.Rd | 110 - man/read_dataset_spc.Rd | 114 - man/read_metadata.Rd | 74 - man/read_ms_spectra.Rd | 132 +- man/read_multiple_csvs.Rd | 66 - man/read_varian_2dspectra_raw.Rd | 202 +-- man/read_varian_spectra_raw.Rd | 98 - man/recursive_feature_elimination.Rd | 116 - man/remove_data.Rd | 106 - man/remove_data_variables.Rd | 82 - man/remove_metadata_variables.Rd | 74 - man/remove_peaks_interval.Rd | 78 - man/remove_peaks_interval_sample_list.Rd | 80 - man/remove_samples.Rd | 78 - man/remove_samples_by_na_metadata.Rd | 74 - man/remove_samples_by_nas.Rd | 78 - man/remove_variables_by_nas.Rd | 78 - man/remove_x_values_by_interval.Rd | 66 - man/replace_data_value.Rd | 94 - man/replace_metadata_value.Rd | 86 - man/savitzky_golay.Rd | 72 - man/scaling.Rd | 72 - man/scaling_samples.Rd | 72 - man/set_metadata.Rd | 78 - man/set_sample_names.Rd | 74 - man/set_value_label.Rd | 72 - man/set_x_label.Rd | 72 - man/set_x_values.Rd | 80 - man/shift_correction.Rd | 88 - man/smoothing_interpolation.Rd | 104 - man/snv_dataset.Rd | 54 man/spectra_options.Rd | 62 - man/stats_by_sample.Rd | 72 - man/stats_by_variable.Rd | 80 - man/subset_by_samples_and_xvalues.Rd | 104 - man/subset_metadata.Rd | 72 - man/subset_random_samples.Rd | 72 - man/subset_samples.Rd | 78 - man/subset_samples_by_metadata_values.Rd | 82 - man/subset_x_values.Rd | 78 - man/subset_x_values_by_interval.Rd | 78 - man/sum_2d_dataset.Rd | 102 - man/sum_dataset.Rd | 108 - man/summary_var_importance.Rd | 80 - man/tTests_dataset.Rd | 94 - man/train_and_predict.Rd | 134 +- man/train_classifier.Rd | 132 +- man/train_models_performance.Rd | 156 +- man/transform_data.Rd | 84 - man/transmittance_to_absorbance.Rd | 60 man/values_per_peak.Rd | 66 - man/values_per_sample.Rd | 66 - man/variables_as_metadata.Rd | 78 - man/volcano_plot_fc_tt.Rd | 98 - man/x_values_to_indexes.Rd | 72 - man/xvalue_interval_to_indexes.Rd | 78 - vignettes/dataset_2d_analysis.Rmd | 323 ++--- 247 files changed, 17286 insertions(+), 17296 deletions(-)
Title: 'KorAP' Web Service Client Package
Description: A client package that makes the 'KorAP' web service API accessible from R.
The corpus analysis platform 'KorAP' has been developed as a scientific tool to make
potentially large, stratified and multiply annotated corpora, such as the 'German Reference Corpus DeReKo'
or the 'Corpus of the Contemporary Romanian Language CoRoLa', accessible for linguists to let them verify
hypotheses and to find interesting patterns in real language use.
The 'RKorAPClient' package provides access to 'KorAP' and the corpora behind it for user-created R code,
as a programmatic alternative to the 'KorAP' web user-interface.
You can learn more about 'KorAP' and use it directly on 'DeReKo' at <https://korap.ids-mannheim.de/>.
Author: Marc Kupietz [aut, cre],
Nils Diewald [ctb],
Leibniz Institute for the German Language [cph, fnd]
Maintainer: Marc Kupietz <kupietz@ids-mannheim.de>
Diff between RKorAPClient versions 0.6.1 dated 2021-03-12 and 0.7.1 dated 2021-09-21
RKorAPClient-0.6.1/RKorAPClient/R/highcharter-helper.R |only RKorAPClient-0.6.1/RKorAPClient/man/corpusQuery-KorAPConnection-method.Rd |only RKorAPClient-0.6.1/RKorAPClient/man/highcharter-helpers.Rd |only RKorAPClient-0.7.1/RKorAPClient/DESCRIPTION | 18 RKorAPClient-0.7.1/RKorAPClient/MD5 | 56 + RKorAPClient-0.7.1/RKorAPClient/NAMESPACE | 17 RKorAPClient-0.7.1/RKorAPClient/NEWS.md | 45 + RKorAPClient-0.7.1/RKorAPClient/R/KorAPConnection.R | 48 + RKorAPClient-0.7.1/RKorAPClient/R/KorAPCorpusStats.R | 12 RKorAPClient-0.7.1/RKorAPClient/R/KorAPQuery.R | 319 ++++------ RKorAPClient-0.7.1/RKorAPClient/R/association-scores.R | 22 RKorAPClient-0.7.1/RKorAPClient/R/ci.R | 11 RKorAPClient-0.7.1/RKorAPClient/R/collocationAnalysis.R |only RKorAPClient-0.7.1/RKorAPClient/R/collocationScoreQuery.R |only RKorAPClient-0.7.1/RKorAPClient/R/hc_add_onclick_korap_search.R |only RKorAPClient-0.7.1/RKorAPClient/R/hc_freq_by_year_ci.R |only RKorAPClient-0.7.1/RKorAPClient/R/misc.R | 25 RKorAPClient-0.7.1/RKorAPClient/R/reexports.R | 2 RKorAPClient-0.7.1/RKorAPClient/demo/00Index | 20 RKorAPClient-0.7.1/RKorAPClient/demo/displayKwics.R |only RKorAPClient-0.7.1/RKorAPClient/demo/light-verb-construction-ca.R |only RKorAPClient-0.7.1/RKorAPClient/man/KorAPConnection-class.Rd | 19 RKorAPClient-0.7.1/RKorAPClient/man/KorAPCorpusStats-class.Rd | 2 RKorAPClient-0.7.1/RKorAPClient/man/KorAPQuery-class.Rd | 191 +++-- RKorAPClient-0.7.1/RKorAPClient/man/RKorAPClient-package.Rd | 2 RKorAPClient-0.7.1/RKorAPClient/man/association-score-functions.Rd | 27 RKorAPClient-0.7.1/RKorAPClient/man/collocationAnalysis-KorAPConnection-method.Rd |only RKorAPClient-0.7.1/RKorAPClient/man/collocationScoreQuery-KorAPConnection-method.Rd |only RKorAPClient-0.7.1/RKorAPClient/man/corpusStats-KorAPConnection-method.Rd | 2 RKorAPClient-0.7.1/RKorAPClient/man/figures/lifecycle-experimental.svg |only RKorAPClient-0.7.1/RKorAPClient/man/hc_add_onclick_korap_search.Rd |only RKorAPClient-0.7.1/RKorAPClient/man/hc_freq_by_year_ci.Rd |only RKorAPClient-0.7.1/RKorAPClient/man/misc-functions.Rd | 30 RKorAPClient-0.7.1/RKorAPClient/man/pipe.Rd | 2 RKorAPClient-0.7.1/RKorAPClient/man/synsemanticStopwords.Rd |only RKorAPClient-0.7.1/RKorAPClient/tests/testthat/test-collocations.R |only RKorAPClient-0.7.1/RKorAPClient/tests/testthat/test-corpusQuery.R | 22 37 files changed, 523 insertions(+), 369 deletions(-)
More information about RcppCensSpatial at CRAN
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Title: Automated Backtesting of Portfolios over Multiple Datasets
Description: Automated backtesting of multiple portfolios over multiple
datasets of stock prices in a rolling-window fashion. Intended for
researchers and practitioners to backtest a set of different portfolios,
as well as by a course instructor to assess the students in their portfolio
design in a fully automated and convenient manner, with results conveniently
formatted in tables and plots. Each portfolio design is easily defined as a
function that takes as input a window of the stock prices and outputs the
portfolio weights. Multiple portfolios can be easily specified as a list
of functions or as files in a folder. Multiple datasets can be conveniently
extracted randomly from different markets, different time periods, and
different subsets of the stock universe. The results can be later assessed
and ranked with tables based on a number of performance criteria (e.g.,
expected return, volatility, Sharpe ratio, drawdown, turnover rate, return
on investment, computational time, etc.), as well as plotted in a number of
ways with nice barplots and boxplots.
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
Diff between portfolioBacktest versions 0.2.3 dated 2021-01-12 and 0.3.0 dated 2021-09-21
portfolioBacktest-0.2.3/portfolioBacktest/man/backtestChartCumReturns.Rd |only portfolioBacktest-0.3.0/portfolioBacktest/DESCRIPTION | 8 portfolioBacktest-0.3.0/portfolioBacktest/MD5 | 94 portfolioBacktest-0.3.0/portfolioBacktest/NAMESPACE | 4 portfolioBacktest-0.3.0/portfolioBacktest/NEWS.md | 13 portfolioBacktest-0.3.0/portfolioBacktest/R/backtestLeaderboard.R | 4 portfolioBacktest-0.3.0/portfolioBacktest/R/backtestSummary.R | 6 portfolioBacktest-0.3.0/portfolioBacktest/R/benchmarkPortfolios.R | 32 portfolioBacktest-0.3.0/portfolioBacktest/R/param_tuning.R | 4 portfolioBacktest-0.3.0/portfolioBacktest/R/performance_portfolios.R |only portfolioBacktest-0.3.0/portfolioBacktest/R/plotsNtables.R | 35 portfolioBacktest-0.3.0/portfolioBacktest/R/portfolioBacktest-package.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/R/portfolioBacktest.R | 817 +- portfolioBacktest-0.3.0/portfolioBacktest/R/stockDataDownload.R | 40 portfolioBacktest-0.3.0/portfolioBacktest/README.md | 2 portfolioBacktest-0.3.0/portfolioBacktest/build/vignette.rds |binary portfolioBacktest-0.3.0/portfolioBacktest/inst/CITATION | 4 portfolioBacktest-0.3.0/portfolioBacktest/inst/doc/PortfolioBacktest.html | 3455 +--------- portfolioBacktest-0.3.0/portfolioBacktest/man/add_performance.Rd | 6 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestBoxPlot.Rd | 4 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestChartCumReturn.Rd |only portfolioBacktest-0.3.0/portfolioBacktest/man/backtestChartDrawdown.Rd | 4 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestChartStackedBar.Rd | 4 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestLeaderboard.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestSelector.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestSummary.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/backtestTable.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/financialDataResample.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/genRandomFuns.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/listPortfoliosWithFailures.Rd |only portfolioBacktest-0.3.0/portfolioBacktest/man/plotPerformanceVsParams.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/portfolioBacktest-package.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/portfolioBacktest.Rd | 27 portfolioBacktest-0.3.0/portfolioBacktest/man/stockDataResample.Rd | 2 portfolioBacktest-0.3.0/portfolioBacktest/man/summaryBarPlot.Rd | 6 portfolioBacktest-0.3.0/portfolioBacktest/man/summaryTable.Rd | 4 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/bt_check.RData |binary portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/bt_files_check.RData |binary portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/bt_selector_check.RData |binary portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/bt_summary_check.RData |binary portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/bt_table_check.RData |binary portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/portfolio_files/0001.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/portfolio_files/0002.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/portfolio_files/0003.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/test-errorControl.R | 30 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/test-plotsNtables.R | 7 portfolioBacktest-0.3.0/portfolioBacktest/tests/testthat/test-portfolioBacktest.R | 65 portfolioBacktest-0.3.0/portfolioBacktest/vignettes/portfolio_files/0001.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/vignettes/portfolio_files/0002.R | 2 portfolioBacktest-0.3.0/portfolioBacktest/vignettes/portfolio_files/0003.R | 2 50 files changed, 1092 insertions(+), 3615 deletions(-)
More information about portfolioBacktest at CRAN
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Title: Public Economic Data and Quantitative Analysis
Description: Provides an interface to access public economic and financial data for
economic research and quantitative analysis. The data sources including
NBS, FRED, Yahoo Finance, 163 Finance and etc.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between pedquant versions 0.1.6 dated 2020-08-27 and 0.1.7 dated 2021-09-21
DESCRIPTION | 6 - MD5 | 48 +++++++------- NAMESPACE | 2 NEWS.md | 8 ++ R/condition_helper_fun.R | 133 ++++++++++++++++++++++++++-------------- R/dim_admin_div_cn.R | 156 +++++++++++++---------------------------------- R/ed_code.R | 4 - R/ed_fred.R | 4 + R/ed_nbs.R | 67 +++++++++++--------- R/ed_wb.R | 3 R/md_0cate.R | 14 +++- R/md_2bond.R | 8 +- R/md_2money.R | 12 ++- R/md_future.R | 1 R/md_stock1_.R | 29 ++++++-- R/md_stock1_163.R | 155 +++++++++++++++++++++++++++++++++++++++++----- R/md_stock_adj.R | 93 ++++++++++++++++------------ R/md_stock_fs.R | 1 R/md_stock_symbol.R | 22 ++---- R/pq_plot.R | 82 ++++++++++++------------ R/sysdata.rda |binary data/ssec.rda |binary man/md_stock.Rd | 13 +++ man/md_stock_adjust.Rd | 18 ++--- man/ssec.Rd | 6 - 25 files changed, 522 insertions(+), 363 deletions(-)
Title: Perceptual Analysis, Visualization and Organization of Spectral
Colour Data
Description: A cohesive framework for the spectral and spatial analysis of
colour described in Maia, Eliason, Bitton, Doucet & Shawkey (2013)
<doi:10.1111/2041-210X.12069> and Maia, Grsuon, Endler & White (2019)
<doi:10.1111/2041-210X.13174>.
Author: Thomas White [aut, cre] (<https://orcid.org/0000-0002-3976-1734>),
Rafael Maia [aut] (<https://orcid.org/0000-0002-7563-9795>),
Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>),
John Endler [aut],
Chad Eliason [aut],
Pierre-Paul Bitton [aut] (<https://orcid.org/0000-0001-5984-2331>)
Maintainer: Thomas White <thomas.white026@gmail.com>
Diff between pavo versions 2.7.0 dated 2021-03-23 and 2.7.1 dated 2021-09-21
DESCRIPTION | 12 +++++++----- MD5 | 28 ++++++++++++++-------------- NEWS.md | 6 ++++++ R/internal.R | 3 +++ build/partial.rdb |binary build/vignette.rds |binary tests/testthat/test-S3colspace.R | 10 +++++----- tests/testthat/test-S3rspec.R | 22 +++++++++++++--------- tests/testthat/test-S3vismodel.R | 2 +- tests/testthat/test-coldist.R | 6 +++--- tests/testthat/test-colspace.R | 6 ++++-- tests/testthat/test-hashes.R | 28 +++++++--------------------- tests/testthat/test-images.R | 2 +- tests/testthat/test-import.R | 4 ++-- tests/testthat/test-vismodel.R | 19 +++++++++++++------ 15 files changed, 79 insertions(+), 69 deletions(-)
Title: Bayesian Summary Data Models for Mendelian Randomization Studies
Description: Bayesian estimation of inverse variance weighted (IVW), Burgess
et al. (2013) <doi:10.1002/gepi.21758>, and MR-Egger, Bowden et
al. (2015) <doi:10.1093/ije/dyv080>, summary data models for Mendelian
randomization analyses.
Author: Okezie Uche-Ikonne [aut, cre] (<https://orcid.org/0000-0002-8461-8099>),
Frank Dondelinger [aut] (<https://orcid.org/0000-0003-1816-6300>),
Tom Palmer [aut] (<https://orcid.org/0000-0003-4655-4511>)
Maintainer: Okezie Uche-Ikonne <okezieikonne@gmail.com>
Diff between mrbayes versions 0.4.0 dated 2021-07-13 and 0.5.0 dated 2021-09-21
DESCRIPTION | 8 +-- MD5 | 75 ++++++++++++++--------------- NEWS.md | 4 + R/mr_egger_rjags.R | 2 R/mr_egger_stan.R | 6 +- R/mr_ivw_rjags.R | 2 R/mr_ivw_stan.R | 5 + R/mr_radialegger_rjags.R | 2 R/mr_radialegger_stan.R | 5 + R/mrinput_mrformat.R | 2 R/mvmr_egger_rjags.R | 4 + R/mvmr_egger_stan.R | 6 +- R/mvmr_ivw_rjags.R | 2 R/mvmr_ivw_stan.R | 5 + R/rstan_check.R |only README.md | 2 build/partial.rdb |binary man/mr_egger_rjags.Rd | 2 man/mr_egger_stan.Rd | 2 man/mr_ivw_rjags.Rd | 2 man/mr_ivw_stan.Rd | 2 man/mr_radialegger_rjags.Rd | 2 man/mr_radialegger_stan.Rd | 2 man/mrinput_mr_format.Rd | 2 man/mvmr_egger_rjags.Rd | 4 + man/mvmr_egger_stan.Rd | 2 man/mvmr_ivw_rjags.Rd | 2 man/mvmr_ivw_stan.Rd | 2 src/RcppExports.cpp | 5 + tests/testthat/test-mr_egger_rjags.R | 5 + tests/testthat/test-mr_egger_stan.R | 4 + tests/testthat/test-mr_ivw_rjags.R | 4 + tests/testthat/test-mr_ivw_stan.R | 3 + tests/testthat/test-mr_radialegger_rjags.R | 5 + tests/testthat/test-mr_radialegger_stan.R | 4 + tests/testthat/test-mvmr_egger_rjags.R | 4 + tests/testthat/test-mvmr_egger_stan.R | 3 + tests/testthat/test-mvmr_ivw_rjags.R | 4 + tests/testthat/test-mvmr_ivw_stan.R | 3 + 39 files changed, 152 insertions(+), 46 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva <psilva@porto.ucp.pt>, Paula Brito
<mpbrito.fep.up.pt>
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>
Diff between MAINT.Data versions 2.6.1 dated 2021-05-04 and 2.6.2 dated 2021-09-21
CHANGELOG | 5 +++++ DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- man/MAINT.Data-package.Rd | 4 ++-- src/MDataGaussLogLik.h | 3 +-- src/msnCP_dev.cpp | 4 ++-- src/msnCP_dev.h | 2 +- src/msnCP_dev_grad.cpp | 2 +- 8 files changed, 24 insertions(+), 20 deletions(-)
Title: A Pipeline Toolkit for Reproducible Computation at Scale
Description: A general-purpose computational engine for data
analysis, drake rebuilds intermediate data objects when their
dependencies change, and it skips work when the results are already up
to date. Not every execution starts from scratch, there is native
support for parallel and distributed computing, and completed projects
have tangible evidence that they are reproducible. Extensive
documentation, from beginner-friendly tutorials to practical examples
and more, is available at the reference website
<https://docs.ropensci.org/drake/> and the online manual
<https://books.ropensci.org/drake/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Alex Axthelm [ctb],
Jasper Clarkberg [ctb],
Kirill Müller [ctb],
Ben Bond-Lamberty [ctb] (<https://orcid.org/0000-0001-9525-4633>),
Tristan Mahr [ctb] (<https://orcid.org/0000-0002-8890-5116>),
Miles McBain [ctb] (<https://orcid.org/0000-0003-2865-2548>),
Noam Ross [ctb] (<https://orcid.org/0000-0002-2136-0000>),
Ellis Hughes [ctb],
Matthew Mark Strasiotto [ctb],
Ben Marwick [rev],
Peter Slaughter [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between drake versions 7.13.2 dated 2021-04-22 and 7.13.3 dated 2021-09-21
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++++ R/drake_config.R | 3 ++- R/drake_plan.R | 11 +++++++++++ R/local_build.R | 4 ++-- R/walk_code.R | 15 +++++++++++++++ man/drake_config.Rd | 3 ++- man/make.Rd | 3 ++- man/new_drake_settings.Rd | 3 ++- tests/testthat/test-6-analysis.R | 4 ++++ tests/testthat/test-6-plans.R | 16 ++++++++++++++++ 12 files changed, 77 insertions(+), 20 deletions(-)
Title: Date-Time Types and Tools
Description: Provides a comprehensive library for date-time manipulations
using a new family of orthogonal date-time classes (durations, time
points, zoned-times, and calendars) that partition responsibilities so
that the complexities of time zones are only considered when they are
really needed. Capabilities include: date-time parsing, formatting,
arithmetic, extraction and updating of components, and rounding.
Author: Davis Vaughan [aut, cre],
RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between clock versions 0.4.0 dated 2021-07-22 and 0.4.1 dated 2021-09-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/invalid.R | 9 +++++++-- man/clock-invalid.Rd | 9 +++++++-- tests/testthat/test-zoned-time.R | 9 ++++----- 6 files changed, 31 insertions(+), 18 deletions(-)
Title: Capture Hi-C Analysis Engine
Description: Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
Author: Erle Holgersen [aut],
Olivia Leavy [aut],
Olivia Fletcher [aut],
Frank Dudbridge [aut],
Syed Haider [aut, cre]
Maintainer: Syed Haider <Syed.Haider@icr.ac.uk>
Diff between chicane versions 0.1.6 dated 2021-07-25 and 0.1.7 dated 2021-09-21
DESCRIPTION | 18 ++-- MD5 | 12 +- NEWS | 5 + R/add.covariates.R | 5 - R/combine.replicates.R | 2 inst/doc/Getting_Started.html | 138 +++++++++++++++++++++++++-------- inst/doc/Visualising_Interactions.html | 8 - 7 files changed, 132 insertions(+), 56 deletions(-)
Title: Bayesian Inference of Non-Linear and Non-Gaussian State Space
Models
Description: Efficient methods for Bayesian inference of state space models
via particle Markov chain Monte Carlo (MCMC) and MCMC based on parallel
importance sampling type weighted estimators
(Vihola, Helske, and Franks, 2020, <doi:10.1111/sjos.12492>).
Gaussian, Poisson, binomial, negative binomial, and Gamma
observation densities and basic stochastic volatility models
with linear-Gaussian state dynamics,
as well as general non-linear Gaussian models and discretised
diffusion models are supported.
Author: Jouni Helske [aut, cre] (<https://orcid.org/0000-0001-7130-793X>),
Matti Vihola [aut] (<https://orcid.org/0000-0002-8041-7222>)
Maintainer: Jouni Helske <jouni.helske@iki.fi>
Diff between bssm versions 1.1.7 dated 2021-09-20 and 1.1.7-1 dated 2021-09-21
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 6 +++++- R/predict.R | 4 +++- inst/doc/bssm.html | 2 +- inst/doc/growth_model.html | 6 +++--- inst/doc/sde_model.html | 2 +- man/predict.mcmc_output.Rd | 4 +++- tests/testthat/test_predict.R | 25 ++++++++++++++++++++----- 9 files changed, 48 insertions(+), 25 deletions(-)
More information about BayesOrdDesign at CRAN
Permanent link
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. References: a) Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets. Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>. b) Tsagris, M., Lagani, V. and Tsamardinos, I. (2018). Feature selection for high-dimensional temporal data. BMC Bioinformatics, 19:17. <doi:10.1186/s12859-018-2023-7>. c) Tsagris, M., Borboudakis, G., Lagani, V. and Tsamardinos, I. (2018). Constraint-based causal discovery with mixed data. International Journal of Data Science and Analytics, 6(1): 19-30. <doi:10.1007/s41060-018-0097-y>. d) Tsagris, M., Papadovasilakis, Z., Lakiotaki, K. and Tsamardinos, I. (2018). Efficient feature selection on gene expression data: Which algorithm to use? BioRxiv. <doi:10.1101/431734>. e) Tsagris, M. (2019). Bayesian Network Learning with the PC Algorithm: An Improved and Correct Variation. Applied Artificial Intelligence, 33(2):101-123. <doi:10.1080/08839514.2018.1526760>. f) Tsagris, M. and Tsamardinos, I. (2019). Feature selection with the R package MXM. F1000Research 7: 1505. <doi:10.12688/f1000research.16216.2>. g) Borboudakis, G. and Tsamardinos, I. (2019). Forward-Backward Selection with Early Dropping. Journal of Machine Learning Research 20: 1-39. h) The gamma-OMP algorithm for feature selection with application to gene expression data. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Accepted for publication) <doi:10.1109/TCBB.2020.3029952>.
Author: Michail Tsagris [aut, cre],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between MXM versions 1.5.1 dated 2021-02-23 and 1.5.2 dated 2021-09-21
DESCRIPTION | 8 +- MD5 | 36 ++++++------ R/compare_p_values.R | 2 R/partialcor.R | 30 ++++------ R/univariateScore.gee.R | 2 inst/doc/FS_guide.pdf |binary inst/doc/MMPC_tutorial.R | 2 inst/doc/MMPC_tutorial.Rmd | 2 inst/doc/MMPC_tutorial.html | 86 ++++++++++++++--------------- inst/doc/SES_KMVerrou_11_12.R | 2 inst/doc/SES_KMVerrou_11_12.Rmd | 2 inst/doc/SES_KMVerrou_11_12.html | 113 +++++++++++++++++++-------------------- inst/doc/article.pdf |binary inst/doc/guide.pdf |binary man/MXM-package.Rd | 4 - man/gomp.Rd | 13 +--- man/partialcor.Rd | 2 vignettes/MMPC_tutorial.Rmd | 2 vignettes/SES_KMVerrou_11_12.Rmd | 2 19 files changed, 150 insertions(+), 158 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 0.9.3 dated 2021-05-11 and 0.9.4 dated 2021-09-21
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++-------------- NEWS.md | 9 ++++++ R/datasets.R | 17 +++++++++-- README.md | 31 ++++++++++++-------- data/castaways.rda |binary data/challenges.rda |binary data/hidden-idols.rda |binary data/jury-votes.rda |binary data/season-summary.rda |binary data/tribe-mapping.rda |binary data/vote-history.rda |binary man/castaways.Rd | 3 +- man/challenges.Rd | 2 + man/hidden_idols.Rd | 1 man/immunity.Rd | 2 - man/jury_votes.Rd | 2 + man/rewards.Rd | 2 - man/season_summary.Rd | 1 man/tribe_mapping.Rd | 71 ++++++++++++++++++++++++------------------------ man/vote_history.Rd | 3 ++ 21 files changed, 113 insertions(+), 77 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators and tests for panel data
econometrics, as described in Baltagi (2021), Econometric Analysis of Panel Data, ISBN-13:978-3-030-53952-8,
Hsiao (2014), Analysis of Panel Data <doi:10.1017/CBO9781139839327>, and
Croissant and Millo (2018), Panel Data Econometrics with R, ISBN-13:978-1-118-94918-4.
Author: Yves Croissant [aut, cre],
Giovanni Millo [aut],
Kevin Tappe [aut],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>
Diff between plm versions 2.4-1 dated 2021-03-02 and 2.4-2 dated 2021-09-21
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plm-2.4-2/plm/R/tool_model.extract.R | 162 plm-2.4-2/plm/R/tool_pdata.frame.R | 391 +- plm-2.4-2/plm/R/tool_ranfixef.R | 119 plm-2.4-2/plm/R/tool_transformations.R | 247 - plm-2.4-2/plm/R/tool_transformations_collapse.R | 1056 +++-- plm-2.4-2/plm/R/tool_vcovG.R | 194 - plm-2.4-2/plm/build/partial.rdb |binary plm-2.4-2/plm/build/vignette.rds |binary plm-2.4-2/plm/data/Cigar.rda |binary plm-2.4-2/plm/data/Crime.rda |binary plm-2.4-2/plm/data/EmplUK.rda |binary plm-2.4-2/plm/data/Gasoline.rda |binary plm-2.4-2/plm/data/Grunfeld.rda |binary plm-2.4-2/plm/data/Hedonic.rda |binary plm-2.4-2/plm/data/LaborSupply.rda |binary plm-2.4-2/plm/data/Males.rda |binary plm-2.4-2/plm/data/Parity.rda |binary plm-2.4-2/plm/data/Produc.rda |binary plm-2.4-2/plm/data/RiceFarms.rda |binary plm-2.4-2/plm/data/Snmesp.rda |binary plm-2.4-2/plm/data/SumHes.rda |binary plm-2.4-2/plm/data/Wages.rda |binary plm-2.4-2/plm/inst/CITATION | 2 plm-2.4-2/plm/inst/REFERENCES.bib | 132 plm-2.4-2/plm/inst/doc/A_plmPackage.R | 80 plm-2.4-2/plm/inst/doc/A_plmPackage.Rmd | 314 + plm-2.4-2/plm/inst/doc/A_plmPackage.html | 911 +++-- plm-2.4-2/plm/inst/doc/B_plmFunction.R | 32 plm-2.4-2/plm/inst/doc/B_plmFunction.Rmd | 154 plm-2.4-2/plm/inst/doc/B_plmFunction.html | 240 - plm-2.4-2/plm/inst/doc/C_plmModelComponents.R | 8 plm-2.4-2/plm/inst/doc/C_plmModelComponents.Rmd | 69 plm-2.4-2/plm/inst/doc/C_plmModelComponents.html | 33 plm-2.4-2/plm/inst/removed/unused.R | 35 plm-2.4-2/plm/man/cipstest.Rd | 31 plm-2.4-2/plm/man/cortab.Rd | 15 plm-2.4-2/plm/man/has.intercept.Rd | 13 plm-2.4-2/plm/man/lag.plm.Rd | 39 plm-2.4-2/plm/man/model.frame.pdata.frame.Rd | 4 plm-2.4-2/plm/man/mtest.Rd | 9 plm-2.4-2/plm/man/pcce.Rd | 8 plm-2.4-2/plm/man/pcdtest.Rd | 29 plm-2.4-2/plm/man/pgmm.Rd | 33 plm-2.4-2/plm/man/pgrangertest.Rd | 5 plm-2.4-2/plm/man/phansi.Rd |only plm-2.4-2/plm/man/pht.Rd | 256 - plm-2.4-2/plm/man/piest.Rd | 17 plm-2.4-2/plm/man/pldv.Rd | 40 plm-2.4-2/plm/man/plm-deprecated.Rd | 2 plm-2.4-2/plm/man/plm.Rd | 26 plm-2.4-2/plm/man/plm.fast.Rd | 82 plm-2.4-2/plm/man/pmg.Rd | 18 plm-2.4-2/plm/man/pseriesfy.Rd |only plm-2.4-2/plm/man/purtest.Rd | 43 plm-2.4-2/plm/man/pvar.Rd | 3 plm-2.4-2/plm/man/pvcm.Rd | 14 plm-2.4-2/plm/man/r.squared.Rd | 4 plm-2.4-2/plm/man/sargan.Rd | 2 plm-2.4-2/plm/man/summary.plm.Rd | 2 plm-2.4-2/plm/man/vcovBK.Rd | 22 plm-2.4-2/plm/man/vcovDC.Rd | 19 plm-2.4-2/plm/man/vcovG.Rd | 7 plm-2.4-2/plm/man/vcovHC.plm.Rd | 20 plm-2.4-2/plm/man/vcovNW.Rd | 19 plm-2.4-2/plm/man/vcovSCC.Rd | 19 plm-2.4-2/plm/man/within_intercept.Rd | 3 plm-2.4-2/plm/tests/Examples/plm-Ex.Rout.save | 1076 +++++- plm-2.4-2/plm/tests/test_Estimators.R | 28 plm-2.4-2/plm/tests/test_Estimators.Rout.save | 190 - plm-2.4-2/plm/tests/test_EstimatorsIV.R |only plm-2.4-2/plm/tests/test_EstimatorsIV.Rout.save |only plm-2.4-2/plm/tests/test_EstimatorsNested.R |only plm-2.4-2/plm/tests/test_EstimatorsNested.Rout.save |only plm-2.4-2/plm/tests/test_detect_lin_dep_alias.R | 3 plm-2.4-2/plm/tests/test_fixef2.R | 395 +- plm-2.4-2/plm/tests/test_fixef2.Rout.save | 723 +++- plm-2.4-2/plm/tests/test_fixef_comp_lm_plm.R | 1 plm-2.4-2/plm/tests/test_fixef_comp_lm_plm.Rout.save | 7 plm-2.4-2/plm/tests/test_groupGenerics_pseries.R | 10 plm-2.4-2/plm/tests/test_groupGenerics_pseries.Rout.save | 22 plm-2.4-2/plm/tests/test_lag_lead.R | 3 plm-2.4-2/plm/tests/test_lag_lead.Rout.save | 210 + plm-2.4-2/plm/tests/test_lagt_leadt.R | 13 plm-2.4-2/plm/tests/test_lagt_leadt.Rout.save | 220 + plm-2.4-2/plm/tests/test_make.pconsecutive_pbalanced.R | 24 plm-2.4-2/plm/tests/test_order_between_fixef_ranef.R |only plm-2.4-2/plm/tests/test_order_between_fixef_ranef.Rout.save |only plm-2.4-2/plm/tests/test_pdata.frame_pseriesfy.R |only plm-2.4-2/plm/tests/test_pdata.frame_pseriesfy.Rout |only plm-2.4-2/plm/tests/test_pdata.frame_subsetting.R | 78 plm-2.4-2/plm/tests/test_pdata.frame_subsetting.Rout.save | 86 plm-2.4-2/plm/tests/test_pgmm.R | 45 plm-2.4-2/plm/tests/test_pgmm.Rout.save | 835 +++- plm-2.4-2/plm/tests/test_pht.R | 2 plm-2.4-2/plm/tests/test_pht.Rout.save | 840 ++-- plm-2.4-2/plm/tests/test_pseries_subsetting.R | 140 plm-2.4-2/plm/tests/test_pseries_subsetting.Rout.save |only plm-2.4-2/plm/tests/test_purtest.R | 23 plm-2.4-2/plm/tests/test_purtest.Rout.save | 1536 ++++---- plm-2.4-2/plm/tests/test_pvcm.R | 14 plm-2.4-2/plm/tests/test_pvcm.Rout.save | 1937 +++++------ plm-2.4-2/plm/tests/test_transformations_collapse.R | 288 + plm-2.4-2/plm/vignettes/A_plmPackage.Rmd | 314 + plm-2.4-2/plm/vignettes/B_plmFunction.Rmd | 154 plm-2.4-2/plm/vignettes/C_plmModelComponents.Rmd | 69 138 files changed, 11538 insertions(+), 6839 deletions(-)
Title: Litter Analysis
Description: Data sets on various litter types like beach litter, riverain
litter, floating litter, and seafloor litter are rapidly growing. This
package offers a simple user interface to analyse these litter data in
a consistent and reproducible way. It also provides functions to
facilitate several kinds of litter analysis, e.g., trend analysis,
power analysis, and baseline analysis. Under the hood, these functions
are also used by the user interface. See Schulz et al. (2019)
<doi:10.1016/j.envpol.2019.02.030> for details. MS-Windows users are
advised to run 'litteR' in 'RStudio'. See our vignette: Installation manual
for 'RStudio' and 'litteR'.
Author: Dennis Walvoort [aut, cre, cph],
Willem van Loon [aut, cph],
Rijkswaterstaat - The Netherlands [cph, fnd, dtc]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between litteR versions 0.9.0 dated 2021-09-08 and 0.9.1 dated 2021-09-21
litteR-0.9.0/litteR/vignettes/fig/beach-litter-cover-photo.jpg |only litteR-0.9.1/litteR/DESCRIPTION | 10 ++--- litteR-0.9.1/litteR/MD5 | 20 +++++----- litteR-0.9.1/litteR/NEWS.md | 6 +++ litteR-0.9.1/litteR/build/partial.rdb |binary litteR-0.9.1/litteR/inst/doc/litteR-installation.html | 4 +- litteR-0.9.1/litteR/inst/doc/litteR-manual.R | 3 - litteR-0.9.1/litteR/inst/doc/litteR-manual.Rmd | 18 ++++----- litteR-0.9.1/litteR/inst/doc/litteR-manual.html | 16 +++----- litteR-0.9.1/litteR/tests/testthat/test-counts.R | 6 +-- litteR-0.9.1/litteR/vignettes/fig/beach-litter-cover-photo.png |only litteR-0.9.1/litteR/vignettes/litteR-manual.Rmd | 18 ++++----- 12 files changed, 51 insertions(+), 50 deletions(-)
Title: Easy Computation of Alpha Functional Diversity Indices
Description: Computes 5 alpha-functional diversity indices: Functional
Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic),
Functional Dispersion (FDis) and Rao's entropy (Q) (reviewed in Villéger
et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient and modular functions
to compute functional diversity indices.
Author: Matthias Grenié [aut, cre] (<https://orcid.org/0000-0002-4659-7522>),
Hugo Gruson [aut] (<https://orcid.org/0000-0002-4094-1476>)
Maintainer: Matthias Grenié <matthias.grenie@gmail.com>
Diff between fundiversity versions 0.2.0 dated 2021-05-14 and 0.2.1 dated 2021-09-21
DESCRIPTION | 8 MD5 | 86 +++--- NAMESPACE | 2 NEWS.md | 6 R/fd_chull.R | 3 R/fd_chull_intersect.R | 3 R/fd_fdis.R | 7 R/fd_fdiv.R | 13 R/fd_feve.R | 14 R/fd_fric.R | 18 - R/fd_fric_intersect.R | 3 R/fd_raoq.R | 13 README.md | 32 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 6 inst/doc/fundiversity.html | 173 +++++------- inst/doc/parallel.html | 1 inst/doc/performance.Rmd | 405 +++++++++++++++------------- inst/doc/performance.html | 436 ++++++++++++++++--------------- man/fd_fdis.Rd | 2 man/fd_fdiv.Rd | 17 - man/fd_feve.Rd | 4 man/fd_fric.Rd | 18 - man/fd_fric_intersect.Rd | 18 - man/fd_raoq.Rd | 2 tests/testthat/test-fdis.R | 11 tests/testthat/test-fdiv.R | 11 tests/testthat/test-feve.R | 13 tests/testthat/test-fric.R | 12 tests/testthat/test-fric_intersect.R | 38 +- tests/testthat/test-raoq.R | 11 vignettes/fd-bench-data-rao-1.png |binary vignettes/fd-bench-sites-compare-1.png |binary vignettes/fd-bench-sites-fdiv-1.png |binary vignettes/fd-bench-sites-feve-1.png |binary vignettes/fd-bench-sites-fric-1.png |binary vignettes/fd-bench-sites-raoq-1.png |binary vignettes/fd-bench-species-compare-1.png |binary vignettes/fd-bench-species-fdiv-1.png |binary vignettes/fd-bench-species-feve-1.png |binary vignettes/fd-bench-species-fric-1.png |binary vignettes/fd-bench-species-raoq-1.png |binary vignettes/performance.Rmd | 405 +++++++++++++++------------- 44 files changed, 988 insertions(+), 803 deletions(-)
Title: Interface to the 'Microsoft 365' Suite of Cloud Services
Description: An interface to the 'Microsoft 365' (formerly known as 'Office 365') suite of cloud services, building on the framework supplied by the 'AzureGraph' package. Enables access from R to data stored in 'Teams', 'SharePoint Online' and 'OneDrive', including the ability to list drive folder contents, upload and download files, send messages, and retrieve data lists. Also provides a full-featured 'Outlook' email client, with the ability to send emails and manage emails and mail folders.
Author: Hong Ooi [aut, cre],
Roman Zenka [ctb],
Robert Ashton [ctb],
Microsoft [cph]
Maintainer: Hong Ooi <hongooi73@gmail.com>
Diff between Microsoft365R versions 2.3.0 dated 2021-08-12 and 2.3.1 dated 2021-09-21
Microsoft365R-2.3.0/Microsoft365R/R/make_basic_list.R |only Microsoft365R-2.3.0/Microsoft365R/man/make_basic_list.Rd |only Microsoft365R-2.3.1/Microsoft365R/DESCRIPTION | 8 Microsoft365R-2.3.1/Microsoft365R/MD5 | 85 +++++----- Microsoft365R-2.3.1/Microsoft365R/NAMESPACE | 1 Microsoft365R-2.3.1/Microsoft365R/NEWS.md | 16 + Microsoft365R-2.3.1/Microsoft365R/R/Microsoft365R.R | 1 Microsoft365R-2.3.1/Microsoft365R/R/add_methods.R | 50 ++++- Microsoft365R-2.3.1/Microsoft365R/R/build_chatmessage_body.R | 9 - Microsoft365R-2.3.1/Microsoft365R/R/client.R | 84 ++++++--- Microsoft365R-2.3.1/Microsoft365R/R/ms_channel.R | 4 Microsoft365R-2.3.1/Microsoft365R/R/ms_chat.R | 4 Microsoft365R-2.3.1/Microsoft365R/R/ms_chat_message.R | 2 Microsoft365R-2.3.1/Microsoft365R/R/ms_drive_item.R | 22 ++ Microsoft365R-2.3.1/Microsoft365R/R/ms_outlook.R | 2 Microsoft365R-2.3.1/Microsoft365R/R/ms_outlook_folder.R | 2 Microsoft365R-2.3.1/Microsoft365R/R/ms_plan.R | 4 Microsoft365R-2.3.1/Microsoft365R/R/ms_plan_bucket.R | 2 Microsoft365R-2.3.1/Microsoft365R/R/ms_site.R | 6 Microsoft365R-2.3.1/Microsoft365R/R/ms_team.R | 6 Microsoft365R-2.3.1/Microsoft365R/build/vignette.rds |binary Microsoft365R-2.3.1/Microsoft365R/inst/app_registration.md | 6 Microsoft365R-2.3.1/Microsoft365R/inst/doc/auth.Rmd | 30 +++ Microsoft365R-2.3.1/Microsoft365R/inst/doc/auth.html | 21 ++ Microsoft365R-2.3.1/Microsoft365R/inst/doc/shiny.Rmd |only Microsoft365R-2.3.1/Microsoft365R/inst/doc/shiny.html |only Microsoft365R-2.3.1/Microsoft365R/man/client.Rd | 47 ++++- Microsoft365R-2.3.1/Microsoft365R/man/ms_drive_item.Rd | 1 Microsoft365R-2.3.1/Microsoft365R/tests/testthat/setup.R | 21 ++ Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00_auth.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00a_auth_onedrive.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00b_auth_business_onedrive.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00c_auth_sharepoint.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00d_auth_teams.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test00e_auth_outlook.R |only Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test01_onedrive.R | 40 +++- Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test02_business_onedrive.R | 38 ++-- Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test03_sharepoint.R | 21 +- Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test04_teams.R | 22 -- Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test04a_channel.R | 14 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05_outlook.R | 13 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05a_outlook_folder.R | 10 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05b_outlook_email.R | 9 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05c_outlook_attachment.R | 13 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05d_outlook_send.R | 9 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test05e_outlook_copymove.R | 9 - Microsoft365R-2.3.1/Microsoft365R/tests/testthat/test06_planner.R | 13 - Microsoft365R-2.3.1/Microsoft365R/vignettes/auth.Rmd | 30 +++ Microsoft365R-2.3.1/Microsoft365R/vignettes/shiny.Rmd |only 49 files changed, 436 insertions(+), 239 deletions(-)
Title: Unicode Data and Utilities
Description: Data from Unicode 14.0.0 and related utilities.
Author: Kurt Hornik [aut, cre] (<https://orcid.org/0000-0003-4198-9911>)
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Unicode versions 13.0.0-2 dated 2020-12-03 and 14.0.0-1 dated 2021-09-21
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/basics.R | 31 ++++++++++--------------------- R/charfuns.R | 10 +++++----- R/sysdata.rda |binary man/casefuns.Rd | 4 ++-- man/n_of_u_chars.Rd | 2 +- man/u_scripts.Rd | 2 +- 8 files changed, 30 insertions(+), 41 deletions(-)
Title: Set 'RStudio' Preferences
Description: As of 'RStudio' v1.3, the preferences in the Global Options
dialog (and a number of other preferences that aren’t) are now saved
in simple, plain-text JSON files. This package provides an interface
for working with these 'RStudio' JSON preference files to easily make
modifications without using the point-and-click option menus. This is
particularly helpful when working on teams to ensure a unified
experience across machines and utilizing settings for best practices.
Author: Daniel D. Sjoberg [aut, cre, cph]
(<https://orcid.org/0000-0003-0862-2018>)
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between rstudio.prefs versions 0.1.6 dated 2021-09-20 and 0.1.7 dated 2021-09-21
DESCRIPTION | 6 MD5 | 39 - NAMESPACE | 1 NEWS.md | 6 R/fetch_rstudio_prefs.R | 110 ++-- R/pretty.R | 172 +++---- R/rstudio.prefs-package.R | 28 - R/use_rstudio_keyboard_shortcut.R | 220 ++++----- R/use_rstudio_prefs.R | 166 +++---- R/use_rstudio_secondary_repo.R | 28 - R/utils.R | 446 ++++++++++---------- README.md | 172 +++---- inst/WORDLIST | 2 man/check_min_rstudio_version.Rd | 50 +- man/repo_string_as_named_list.Rd |only man/rstudio_config_path.Rd | 50 +- man/use_rstudio_secondary_repo.Rd | 2 tests/testthat.R | 8 tests/testthat/test-pretty_print_updates.R | 12 tests/testthat/test-repo_string_as_named_list.R | 24 - tests/testthat/test-use_rstudio_keyboard_shortcut.R | 36 - 21 files changed, 798 insertions(+), 780 deletions(-)
Title: Partition/Decomposition of Breeding Values by Paths of
Information
Description: A software that implements a method for partitioning genetic trends to
quantify the sources of genetic gain in breeding programmes.
The partitioning method is described in Garcia-Cortes et al.
(2008) <doi:10.1017/S175173110800205X>. The package includes the
main function AlphaPart for partitioning breeding values and auxiliary
functions for manipulating data and summarizing, visualizing, and saving
results.
Author: Gregor Gorjanc [aut, cre] (<https://orcid.org/0000-0001-8008-2787>),
Jana Obsteter [aut] (<https://orcid.org/0000-0003-1511-3916>),
Thiago de Paula Oliveira [aut]
(<https://orcid.org/0000-0002-4555-2584>)
Maintainer: Gregor Gorjanc <gregor.gorjanc@roslin.ed.ac.uk>
Diff between AlphaPart versions 0.8.1 dated 2020-03-25 and 0.8.2 dated 2021-09-21
AlphaPart-0.8.1/AlphaPart/NEWS.md |only AlphaPart-0.8.1/AlphaPart/R/plot.summaryAlphaPart.R |only AlphaPart-0.8.1/AlphaPart/R/print.AlphaPart.R |only AlphaPart-0.8.1/AlphaPart/R/print.plotSummaryAlphaPart.R |only AlphaPart-0.8.1/AlphaPart/R/print.summaryAlphaPart.R |only AlphaPart-0.8.1/AlphaPart/R/savePlot.plotSummaryAlphaPart.R |only AlphaPart-0.8.1/AlphaPart/R/summary.AlphaPart.R |only AlphaPart-0.8.1/AlphaPart/README.md |only AlphaPart-0.8.1/AlphaPart/TODO |only AlphaPart-0.8.1/AlphaPart/man/figures/README-pressure-1.png |only AlphaPart-0.8.2/AlphaPart/DESCRIPTION | 31 AlphaPart-0.8.2/AlphaPart/MD5 | 55 - AlphaPart-0.8.2/AlphaPart/NAMESPACE | 1 AlphaPart-0.8.2/AlphaPart/R/AlphaPart.R | 387 ++++++---- AlphaPart-0.8.2/AlphaPart/R/methods.R |only AlphaPart-0.8.2/AlphaPart/build/partial.rdb |only AlphaPart-0.8.2/AlphaPart/build/vignette.rds |binary AlphaPart-0.8.2/AlphaPart/inst/doc/alphapart-vignette.html | 198 +++++ AlphaPart-0.8.2/AlphaPart/inst/examples/examples_AlphaPart.R | 6 AlphaPart-0.8.2/AlphaPart/man/AlphaPart.Rd | 243 +++--- AlphaPart-0.8.2/AlphaPart/man/AlphaPart.ped.Rd | 16 AlphaPart-0.8.2/AlphaPart/man/figures/README-example1.png |only AlphaPart-0.8.2/AlphaPart/man/plot.summaryAlphaPart.Rd | 102 +- AlphaPart-0.8.2/AlphaPart/man/print.AlphaPart.Rd | 37 AlphaPart-0.8.2/AlphaPart/man/print.plotSummaryAlphaPart.Rd | 17 AlphaPart-0.8.2/AlphaPart/man/print.summaryAlphaPart.Rd | 17 AlphaPart-0.8.2/AlphaPart/man/savePlot.Rd | 68 - AlphaPart-0.8.2/AlphaPart/man/savePlot.plotSummaryAlphaPart.Rd |only AlphaPart-0.8.2/AlphaPart/man/summary.AlphaPart.Rd | 78 -- AlphaPart-0.8.2/AlphaPart/man/write.csv.Rd | 4 AlphaPart-0.8.2/AlphaPart/src/AlphaPartDrop.cpp | 2 AlphaPart-0.8.2/AlphaPart/tests/testthat/test-alphapart.R | 48 - AlphaPart-0.8.2/AlphaPart/tests/testthat/test-plotSummaryAlphaPart.R |only AlphaPart-0.8.2/AlphaPart/tests/testthat/test-printAlphaPart.R |only AlphaPart-0.8.2/AlphaPart/tests/testthat/test-printPlotSummaryAlphaPart.R |only AlphaPart-0.8.2/AlphaPart/tests/testthat/test-printSummary-alphapart.R |only AlphaPart-0.8.2/AlphaPart/tests/testthat/test-savePlotSummaryAlphaPart.R |only AlphaPart-0.8.2/AlphaPart/tests/testthat/test-summary-alphapart.R | 10 38 files changed, 802 insertions(+), 518 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-07 1.2.0
2020-12-17 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 0.1.5
Title: Design Clinical Trials with Potential Biomarker Effect
Description: Applying 'CUDA' 'GPUs' via 'Numba' for optimal clinical design. It allows the user to utilize a 'reticulate' 'Python' environment and run intensive Monte Carlo simulation to get the optimal cutoff for the clinical design with potential biomarker effect, which can guide the realistic clinical trials.
Author: Yitao Lu [aut, cre] (<https://orcid.org/0000-0002-0523-7416>),
Belaid Moa [aut],
Julie Zhou [aut],
Li Xing [aut] (<https://orcid.org/0000-0002-4186-7909>),
Xuekui Zhang [aut] (<https://orcid.org/0000-0003-4728-2343>)
Maintainer: Yitao Lu <yitaolu@uvic.ca>
Diff between DesignCTPB versions 1.1.1 dated 2021-04-05 and 1.1.3 dated 2021-09-21
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 1 - R/designCTPB.R | 45 +++++++++++++++++++++++++++------------------ inst/doc/guide.Rmd | 8 ++++---- inst/doc/guide.html | 10 +++++----- vignettes/guide.Rmd | 8 ++++---- 7 files changed, 52 insertions(+), 44 deletions(-)
Title: Bayesian Additive Models for Location, Scale, and Shape (and
Beyond)
Description: Infrastructure for estimating probabilistic distributional regression models in a Bayesian framework.
The distribution parameters may capture location, scale, shape, etc. and every parameter may depend
on complex additive terms (fixed, random, smooth, spatial, etc.) similar to a generalized additive model.
The conceptual and computational framework is introduced in Umlauf, Klein, Zeileis (2019)
<doi:10.1080/10618600.2017.1407325> and the R package in Umlauf, Klein, Simon, Zeileis (2019)
<arXiv:1909.11784>.
Author: Nikolaus Umlauf [aut, cre] (<https://orcid.org/0000-0003-2160-9803>),
Nadja Klein [aut] (<https://orcid.org/0000-0002-5072-5347>),
Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>),
Meike Koehler [ctb],
Thorsten Simon [aut] (<https://orcid.org/0000-0002-3778-7738>),
Stanislaus Stadlmann [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between bamlss versions 1.1-4 dated 2021-05-15 and 1.1-5 dated 2021-09-21
DESCRIPTION | 14 - MD5 | 43 ++-- NAMESPACE | 4 NEWS.md | 4 R/BAMLSS.R | 203 ++++++++++++++++---- R/BayesX.R | 7 R/JM.R | 1 R/families.R | 273 +++++++++++++++++++++++++-- R/optimizers.R | 333 ++++++++++++++++----------------- R/samplers.R | 5 build/partial.rdb |binary data/Austria.rda |binary data/LondonFire.rda |binary data/datalist |only inst/doc/bamlss.Rmd | 1 inst/doc/bamlss.html | 11 - man/BayesX.Rd | 3 man/CRPS.Rd | 6 man/LondonFire.Rd | 2 man/dl.bamlss.Rd | 64 +++--- man/family.bamlss.Rd | 5 man/smooth.construct.ms.smooth.spec.Rd | 17 + vignettes/bamlss.Rmd | 1 23 files changed, 699 insertions(+), 298 deletions(-)
Title: Kernel Based Estimates on in-Memory Raster Images
Description: Performs kernel based estimates on in-memory raster images
from the raster package. These kernel estimates include local means
variances, modes, and quantiles. All results are in the form of
raster images, preserving original resolution and projection attributes.
Author: Jonathan Lisic [aut, cre]
Maintainer: Jonathan Lisic <jlisic@gmail.com>
Diff between rasterKernelEstimates versions 1.0.1 dated 2016-08-04 and 1.0.2 dated 2021-09-21
DESCRIPTION | 10 +++++----- MD5 | 17 ++++++++++------- man/rasterLocalCategoricalModes.Rd | 1 - man/rasterLocalMoments.Rd | 1 - man/rasterLocalQuantiles.Rd | 1 - man/rasterLocalSums.Rd | 1 - src/init.c |only src/smooth.multi.c | 11 +---------- src/smooth.multi.h |only src/sum.c | 14 +------------- src/sum.h |only 11 files changed, 17 insertions(+), 39 deletions(-)
More information about rasterKernelEstimates at CRAN
Permanent link
Title: Quantile Regression for Nonlinear Mixed-Effects Models
Description: Quantile regression (QR) for Nonlinear
Mixed-Effects Models via the asymmetric Laplace distribution (ALD).
It uses the Stochastic Approximation of the EM (SAEM) algorithm for
deriving exact maximum likelihood estimates and full inference results
for the fixed-effects and variance components.
It also provides prediction and graphical summaries for assessing the algorithm
convergence and fitting results.
Author: Christian E. Galarza <chedgala@espol.edu.ec> and Victor H. Lachos <hlachos@uconn.edu>
Maintainer: Christian E. Galarza <cgalarza88@gmail.com>
Diff between qrNLMM versions 2.2 dated 2021-06-17 and 3.0 dated 2021-09-21
DESCRIPTION | 14 - MD5 | 22 +- NAMESPACE | 6 R/HelpfulFunctions.R | 82 ++++++++++ R/QRNLMM.R | 388 ++++++++++++++++++++++++++++++-------------------- R/QSAEM_NLMM.R | 67 ++++++-- R/predict.QRNLMM.R |only build/partial.rdb |binary man/QRNLMM.Rd | 15 + man/Soybean.Rd | 2 man/group.plots.Rd | 4 man/predict.QRNLMM.Rd |only man/qrNLMM-package.Rd | 6 13 files changed, 410 insertions(+), 196 deletions(-)
Title: Tools for Information-Based Feature Selection
Description: A toolbox of fast, native and parallel implementations of various information-based importance criteria estimators and feature selection filters based on them, inspired by the overview by Brown, Pocock, Zhao and Lujan (2012) <https://www.jmlr.org/papers/v13/brown12a.html>.
Contains, among other, minimum redundancy maximal relevancy ('mRMR') method by Peng, Long and Ding (2005) <doi:10.1109/TPAMI.2005.159>; joint mutual information ('JMI') method by Yang and Moody (1999) <https://papers.nips.cc/paper/1779-data-visualization-and-feature-selection-new-algorithms-for-nongaussian-data>; double input symmetrical relevance ('DISR') method by Meyer and Bontempi (2006) <doi:10.1007/11732242_9> as well as joint mutual information maximisation ('JMIM') method by Bennasar, Hicks and Setchi (2015) <doi:10.1016/j.eswa.2015.07.007>.
Author: Miron B. Kursa [aut, cre] (<https://orcid.org/0000-0001-7672-648X>)
Maintainer: Miron B. Kursa <m@mbq.me>
Diff between praznik versions 8.0.0 dated 2020-02-29 and 9.0.0 dated 2021-09-21
DESCRIPTION | 14 +++--- MD5 | 42 +++++++++++-------- NAMESPACE | 5 ++ R/scorers.R | 82 +++++++++++++++++++++++++++++++++++++- inst/NEWS | 7 +++ man/MadelonD.Rd | 6 +- man/cmiMatrix.Rd | 4 - man/dnmiMatrix.Rd | 2 man/icmiMatrix.Rd |only man/jmiMatrix.Rd | 2 man/maxCmiScores.Rd |only man/maxJmiScores.Rd |only man/miMatrix.Rd | 2 man/minCmiScores.Rd |only man/minMaxCmiScores.Rd |only man/njmiMatrix.Rd | 2 man/nmiMatrix.Rd | 2 man/praznik-package.Rd | 2 src/cmis.h | 51 +++++++++++++++++++++++ src/maxjmis.h |only src/praznik.c | 18 +++++--- tests/testthat/test-input.R | 5 +- tests/testthat/test-madelon.R | 4 - tests/testthat/test-matrix.R | 13 ++++++ tests/testthat/test-native-pure.R | 26 ++++++++++++ 25 files changed, 242 insertions(+), 47 deletions(-)
Title: Statistical Framework to Define Subgroups in Complex Datasets
Description: High-dimensional datasets that do not exhibit a clear intrinsic clustered structure pose a challenge to conventional clustering algorithms. For this reason, we developed an unsupervised framework that helps scientists to better subgroup their datasets based on visual cues, please see Gao S, Mutter S, Casey A, Makinen V-P (2019) Numero: a statistical framework to define multivariable subgroups in complex population-based datasets, Int J Epidemiology, 48:369-37, <doi:10.1093/ije/dyy113>. The framework includes the necessary functions to construct a self-organizing map of the data, to evaluate the statistical significance of the observed data patterns, and to visualize the results.
Author: Song Gao [aut],
Stefan Mutter [aut],
Aaron E. Casey [aut],
Ville-Petteri Makinen [aut, cre]
Maintainer: Ville-Petteri Makinen <vpmakine@gmail.com>
Diff between Numero versions 1.8.2 dated 2021-07-20 and 1.8.4 dated 2021-09-21
Numero-1.8.2/Numero/inst/extcode/examples.R |only Numero-1.8.2/Numero/src/koho.trainer.cycle.cpp |only Numero-1.8.4/Numero/DESCRIPTION | 8 Numero-1.8.4/Numero/MD5 | 416 +++++------- Numero-1.8.4/Numero/R/nroKmeans.R | 4 Numero-1.8.4/Numero/R/nroSummary.R | 14 Numero-1.8.4/Numero/R/numero.prepare.R | 17 Numero-1.8.4/Numero/R/numero.quality.R | 26 Numero-1.8.4/Numero/build/vignette.rds |binary Numero-1.8.4/Numero/inst/doc/intro.html | 206 ++--- Numero-1.8.4/Numero/man/numero.prepare.Rd | 9 Numero-1.8.4/Numero/src/abacus.approximation.fit.cpp | 2 Numero-1.8.4/Numero/src/abacus.approximation.parameters.cpp | 2 Numero-1.8.4/Numero/src/abacus.approximation.transform.cpp | 2 Numero-1.8.4/Numero/src/abacus.array.cpp | 2 Numero-1.8.4/Numero/src/abacus.basegaussian.apply.cpp | 2 Numero-1.8.4/Numero/src/abacus.basegaussian.parameters.cpp | 2 Numero-1.8.4/Numero/src/abacus.basegaussian.transform.cpp | 2 Numero-1.8.4/Numero/src/abacus.convergence.cpp | 4 Numero-1.8.4/Numero/src/abacus.correlation.cpp | 2 Numero-1.8.4/Numero/src/abacus.destratify.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.add.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.normal.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.p.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.quantile.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.size.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.spread.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.statistic.cpp | 2 Numero-1.8.4/Numero/src/abacus.empirical.z.cpp | 2 Numero-1.8.4/Numero/src/abacus.empiricalbuffer.contents.cpp | 2 Numero-1.8.4/Numero/src/abacus.extrema.cpp | 2 Numero-1.8.4/Numero/src/abacus.gaussian.configure.cpp | 2 Numero-1.8.4/Numero/src/abacus.gaussian.distance.cpp | 2 Numero-1.8.4/Numero/src/abacus.gaussian.optimize.cpp | 2 Numero-1.8.4/Numero/src/abacus.gaussian.quality.cpp | 2 Numero-1.8.4/Numero/src/abacus.h | 2 Numero-1.8.4/Numero/src/abacus.histogram.cpp | 2 Numero-1.8.4/Numero/src/abacus.impute.cpp | 2 Numero-1.8.4/Numero/src/abacus.interpolate.cpp | 2 Numero-1.8.4/Numero/src/abacus.local.h | 2 Numero-1.8.4/Numero/src/abacus.matrix.add.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.column.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.count.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.elements.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.insert.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.location.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.names.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.order.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.remove.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.rename.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.row.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.size.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.symmetric.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.trunk.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.value.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrix.values.cpp | 2 Numero-1.8.4/Numero/src/abacus.matrixbuffer.elements.cpp | 2 Numero-1.8.4/Numero/src/abacus.minimizer.algorithm.cpp | 2 Numero-1.8.4/Numero/src/abacus.minimizer.cpp | 2 Numero-1.8.4/Numero/src/abacus.minimizer.optimize.cpp | 2 Numero-1.8.4/Numero/src/abacus.minimizer.space.cpp | 2 Numero-1.8.4/Numero/src/abacus.minimizer.value.cpp | 2 Numero-1.8.4/Numero/src/abacus.normal.cpp | 2 Numero-1.8.4/Numero/src/abacus.polarize.cpp | 2 Numero-1.8.4/Numero/src/abacus.quantile.cpp | 2 Numero-1.8.4/Numero/src/abacus.shuffle.cpp | 2 Numero-1.8.4/Numero/src/abacus.statistic.cpp | 2 Numero-1.8.4/Numero/src/abacus.transform.cpp | 2 Numero-1.8.4/Numero/src/abacus.twowaymap.cpp | 2 Numero-1.8.4/Numero/src/abacus.version.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.average.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.histograms.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.insert.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.seed.cpp | 2 Numero-1.8.4/Numero/src/koho.engine.shuffle.cpp | 2 Numero-1.8.4/Numero/src/koho.enginebuffer.prepare.cpp | 2 Numero-1.8.4/Numero/src/koho.h | 2 Numero-1.8.4/Numero/src/koho.local.h | 26 Numero-1.8.4/Numero/src/koho.model.configure.cpp | 2 Numero-1.8.4/Numero/src/koho.model.cpp | 2 Numero-1.8.4/Numero/src/koho.model.distance.cpp | 2 Numero-1.8.4/Numero/src/koho.model.identities.cpp | 2 Numero-1.8.4/Numero/src/koho.model.insert.cpp | 3 Numero-1.8.4/Numero/src/koho.model.prototype.cpp | 2 Numero-1.8.4/Numero/src/koho.model.topology.cpp | 2 Numero-1.8.4/Numero/src/koho.model.train.cpp | 122 ++- Numero-1.8.4/Numero/src/koho.point.cpp | 2 Numero-1.8.4/Numero/src/koho.subset.cpp | 2 Numero-1.8.4/Numero/src/koho.subset.join.cpp | 2 Numero-1.8.4/Numero/src/koho.subset.match.cpp | 2 Numero-1.8.4/Numero/src/koho.subset.moments.cpp | 2 Numero-1.8.4/Numero/src/koho.trainer.codebook.cpp | 2 Numero-1.8.4/Numero/src/koho.trainer.cpp | 8 Numero-1.8.4/Numero/src/koho.trainer.distance.cpp | 2 Numero-1.8.4/Numero/src/koho.trainer.match.cpp | 2 Numero-1.8.4/Numero/src/koho.trainer.update.cpp | 16 Numero-1.8.4/Numero/src/koho.version.cpp | 4 Numero-1.8.4/Numero/src/medusa.binsearch.cpp | 2 Numero-1.8.4/Numero/src/medusa.bmax.cpp | 2 Numero-1.8.4/Numero/src/medusa.bmin.cpp | 2 Numero-1.8.4/Numero/src/medusa.bnan.cpp | 2 Numero-1.8.4/Numero/src/medusa.closefile.cpp | 2 Numero-1.8.4/Numero/src/medusa.combine.cpp | 2 Numero-1.8.4/Numero/src/medusa.currtime.cpp | 2 Numero-1.8.4/Numero/src/medusa.file.cpp | 2 Numero-1.8.4/Numero/src/medusa.h | 2 Numero-1.8.4/Numero/src/medusa.lnan.cpp | 2 Numero-1.8.4/Numero/src/medusa.local.h | 2 Numero-1.8.4/Numero/src/medusa.long2string.cpp | 2 Numero-1.8.4/Numero/src/medusa.long2text.cpp | 2 Numero-1.8.4/Numero/src/medusa.match.cpp | 2 Numero-1.8.4/Numero/src/medusa.openfile.cpp | 2 Numero-1.8.4/Numero/src/medusa.real2string.cpp | 2 Numero-1.8.4/Numero/src/medusa.real2text.cpp | 2 Numero-1.8.4/Numero/src/medusa.rlim.cpp | 2 Numero-1.8.4/Numero/src/medusa.rnan.cpp | 2 Numero-1.8.4/Numero/src/medusa.snan.cpp | 2 Numero-1.8.4/Numero/src/medusa.sortreal.cpp | 2 Numero-1.8.4/Numero/src/medusa.sortsize.cpp | 2 Numero-1.8.4/Numero/src/medusa.sortstr.cpp | 2 Numero-1.8.4/Numero/src/medusa.splitstr.cpp | 2 Numero-1.8.4/Numero/src/medusa.string2long.cpp | 2 Numero-1.8.4/Numero/src/medusa.string2real.cpp | 2 Numero-1.8.4/Numero/src/medusa.string2safe.cpp | 2 Numero-1.8.4/Numero/src/medusa.string2size.cpp | 2 Numero-1.8.4/Numero/src/medusa.table.cpp | 2 Numero-1.8.4/Numero/src/medusa.time2text.cpp | 2 Numero-1.8.4/Numero/src/medusa.uniqreal.cpp | 2 Numero-1.8.4/Numero/src/medusa.uniqsize.cpp | 2 Numero-1.8.4/Numero/src/medusa.uniqstr.cpp | 2 Numero-1.8.4/Numero/src/medusa.version.cpp | 2 Numero-1.8.4/Numero/src/nro.h | 2 Numero-1.8.4/Numero/src/nro.matrix2reals.cpp | 2 Numero-1.8.4/Numero/src/nro.medusapanic.cpp | 5 Numero-1.8.4/Numero/src/nro.medusaworry.cpp | 5 Numero-1.8.4/Numero/src/nro.reals2matrix.cpp | 2 Numero-1.8.4/Numero/src/nro.reals2topology.cpp | 2 Numero-1.8.4/Numero/src/nro.reals2vector.cpp | 2 Numero-1.8.4/Numero/src/nro.vector2reals.cpp | 2 Numero-1.8.4/Numero/src/nro.vector2sizes.cpp | 2 Numero-1.8.4/Numero/src/nro_circus_paint.cpp | 2 Numero-1.8.4/Numero/src/nro_circus_show.cpp | 2 Numero-1.8.4/Numero/src/nro_circus_write.cpp | 2 Numero-1.8.4/Numero/src/nro_colorize.cpp | 2 Numero-1.8.4/Numero/src/nro_destratify.cpp | 2 Numero-1.8.4/Numero/src/nro_diffuse.cpp | 2 Numero-1.8.4/Numero/src/nro_figure.cpp | 2 Numero-1.8.4/Numero/src/nro_kohonen.cpp | 2 Numero-1.8.4/Numero/src/nro_label.cpp | 2 Numero-1.8.4/Numero/src/nro_match.cpp | 2 Numero-1.8.4/Numero/src/nro_permute.cpp | 2 Numero-1.8.4/Numero/src/nro_train.cpp | 8 Numero-1.8.4/Numero/src/nro_webpage.cpp | 2 Numero-1.8.4/Numero/src/punos.h | 2 Numero-1.8.4/Numero/src/punos.local.h | 2 Numero-1.8.4/Numero/src/punos.smoothen.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.depth.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.diffuse.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.distance.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.highlight.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.import.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.interpolate.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.levels.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.neighbors.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.operator[].cpp | 2 Numero-1.8.4/Numero/src/punos.topology.paint.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.radius.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.rewire.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.save.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.sigma.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.size.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.stratify.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.weight.cpp | 2 Numero-1.8.4/Numero/src/punos.topology.write.cpp | 2 Numero-1.8.4/Numero/src/punos.version.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.background.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.close.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.group.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.horizontal.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.paint.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artist.vertical.cpp | 2 Numero-1.8.4/Numero/src/scriptum.artistbuffer.prolog.cpp | 2 Numero-1.8.4/Numero/src/scriptum.color.cpp | 2 Numero-1.8.4/Numero/src/scriptum.colorize.cpp | 2 Numero-1.8.4/Numero/src/scriptum.colormap.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.box.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.curve.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.flush.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.group.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.horizontal.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.shape.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.shapes.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.slice.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.style.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.stylize.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.text.cpp | 2 Numero-1.8.4/Numero/src/scriptum.frame.vertical.cpp | 2 Numero-1.8.4/Numero/src/scriptum.framebuffer.cpp | 2 Numero-1.8.4/Numero/src/scriptum.h | 2 Numero-1.8.4/Numero/src/scriptum.limes.cpp | 2 Numero-1.8.4/Numero/src/scriptum.local.h | 2 Numero-1.8.4/Numero/src/scriptum.style.cpp | 2 Numero-1.8.4/Numero/src/scriptum.style2code.cpp | 2 Numero-1.8.4/Numero/src/scriptum.version.cpp | 2 210 files changed, 644 insertions(+), 635 deletions(-)
Title: A Computationally Efficient Mean Shift Implementation
Description: Performs mean shift classification using linear and
k-d tree based nearest neighbor implementations for the Gaussian,
Epanechnikov, and biweight product kernels.
Author: Jonathan Lisic [aut, cre]
Maintainer: Jonathan Lisic <jlisic@gmail.com>
Diff between meanShiftR versions 0.53 dated 2018-12-03 and 0.56 dated 2021-09-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/init.c | 7 ++++--- src/meanShift.c | 9 +++++---- src/meanShift.h | 7 ++++--- 5 files changed, 21 insertions(+), 18 deletions(-)