Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: Provides functions for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
two public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>) and
the 'ISRCTN' (<http://www.isrctn.com/>).
Trial information is downloaded, converted and stored in a database
('SQLite' or 'MongoDB', via 'nodbi').
Functions are provided to identify de-duplicated records,
to easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update previous queries that users retrieved in a database.
The package can be used for meta analysis and trend-analysis of
the design and conduct as well as results of clinical trials.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>)
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.7.1 dated 2021-08-22 and 1.8.0 dated 2021-11-21
DESCRIPTION | 10 MD5 | 40 - NEWS.md | 14 R/main.R | 289 +++++++------- R/utils.R | 402 ++++++++++---------- README.md | 30 - build/vignette.rds |binary inst/doc/ctrdata_analyse.pdf |binary inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/image/README-ctrdata_results_neuroblastoma.png |binary inst/tinytest/ctrdata_ctgov.R | 33 - inst/tinytest/ctrdata_euctr.R | 66 +-- inst/tinytest/ctrdata_isrctn.R | 17 inst/tinytest/setup_ctrdata.R | 2 vignettes/boxpep.png |binary vignettes/ctrdata_analyse.Rmd | 84 +--- vignettes/ctrdata_install.Rmd | 2 vignettes/ctrdata_retrieve.Rmd | 68 +-- vignettes/nb2.png |binary vignettes/nbtrials.png |binary 21 files changed, 557 insertions(+), 500 deletions(-)
Title: Bayesian Quantile Regression for Ordinal Models
Description: Provides functions for estimating Bayesian quantile regression
for ordinal models, calculating covariate effects, and computing measures for
model comparision. Specifically, the package offers two estimation functions -
one for an ordinal model with more than three outcomes. For each ordinal model,
the package provides functions to calculate the covariate effect using the MCMC
outputs. The package also computes marginal likelihood (recommended) and the
Deviance Information Criterion (DIC) for comparing alternative quantile regression
models. Besides, the package also contains functions for making trace plots of MCMC draws
and other functions that aids the estimation or inference of quantile ordinal models.
Rahman, M. A. (2016).“Bayesian Quantile Regression for Ordinal Models.” Bayesian
Analysis, II(I): 1-24 <doi: 10.1214/15-BA939>.
Yu, K., and Moyeed, R. A. (2001). “Bayesian Quantile Regression.” Statistics and
Probability Letters, 54(4): 437–447 <doi: 10.1016/S0167-7152(01)00124-9>.
Koenker, R., and Bassett, G. (1978).“Regression Quantiles.” Econometrica,
46(1): 33-50 <doi: 10.2307/1913643>.
Chib, S. (1995). “Marginal likelihood from the Gibbs output.” Journal of
the American Statistical Association, 90(432):1313–1321, 1995. <doi: 10.1080/01621459.1995.10476635>.
Chib, S., and Jeliazkov, I. (2001). “Marginal likelihood from the
Metropolis-Hastings output.” Journal of the American Statistical Association, 96(453):270–281, 2001. <doi: 10.1198/016214501750332848>.
Author: Mohammad Arshad Rahman Developer [aut],
Prajual Maheshwari [cre]
Maintainer: Prajual Maheshwari <prajual1391@gmail.com>
Diff between bqror versions 1.2.0 dated 2021-09-28 and 1.3.0 dated 2021-11-21
DESCRIPTION | 16 +++++------ MD5 | 40 ++++++++++++++-------------- R/ORI.R | 60 +++++++++++++++++++++--------------------- R/ORII.R | 2 - R/bqror.R | 2 - R/data.R | 14 ++++----- man/Educational_Attainment.Rd | 2 - man/bqror.Rd | 2 - man/covariateEffect_or1.Rd | 8 ++--- man/data25j3.Rd | 2 - man/data25j4.Rd | 2 - man/data50j3.Rd | 2 - man/data50j4.Rd | 2 - man/data75j3.Rd | 2 - man/data75j4.Rd | 2 - man/deviance_or1.Rd | 12 ++++---- man/deviance_or2.Rd | 2 - man/infactor_or1.Rd | 12 ++++---- man/logMargLikelihood_or1.Rd | 4 +- man/quantreg_or1.Rd | 20 +++++++------- man/traceplot_or1.Rd | 4 +- 21 files changed, 106 insertions(+), 106 deletions(-)
Title: Shrinkage Discriminant Analysis and CAT Score Variable Selection
Description: Provides an efficient framework for
high-dimensional linear and diagonal discriminant analysis with
variable selection. The classifier is trained using James-Stein-type
shrinkage estimators and predictor variables are ranked using
correlation-adjusted t-scores (CAT scores). Variable selection error
is controlled using false non-discovery rates or higher criticism.
Author: Miika Ahdesmaki, Verena Zuber, Sebastian Gibb, and Korbinian Strimmer
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between sda versions 1.3.7 dated 2015-07-08 and 1.3.8 dated 2021-11-21
DESCRIPTION | 17 +++++++++-------- MD5 | 16 ++++++++-------- NEWS | 5 +++++ man/catscore.Rd | 6 +++--- man/centroids.Rd | 2 +- man/predict.sda.Rd | 2 +- man/sda.Rd | 6 +++--- man/sda.package.Rd | 8 ++++---- man/sda.ranking.Rd | 11 ++++++----- 9 files changed, 40 insertions(+), 33 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Eddelbuettel [ctb],
The authors of Shiny [cph],
The authors of knitr [cph],
Jeroen Ooms [ctb],
Yohann Demont [ctb],
Joshua Ulrich [ctb],
Xavier Fernandez i Marin [ctb],
George Helffrich [ctb],
Ivan Krylov [ctb],
Michael Sumner [ctb]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 0.107.14 dated 2021-08-21 and 0.108.3 dated 2021-11-21
DESCRIPTION | 18 MD5 | 249 ++++---- NAMESPACE | 10 NEWS.md | 52 + R/asy.R | 3 R/bgplot3d.R | 11 R/buffer.R |only R/clipMesh3d.R | 22 R/convertScene.R | 43 - R/enum.R | 3 R/getBoundary.R |only R/getscene.R | 7 R/internal.R | 10 R/material.R | 16 R/matrices.R | 50 + R/mesh3d.R | 29 - R/obj.R | 3 R/persp3d.R | 3 R/pkgchecks.R |only R/playwidget.R | 22 R/plot3d.R | 19 R/plotmath3d.R | 20 R/ply.R | 2 R/r3d.rgl.R | 12 R/rglcontroller.R | 8 R/rglwidget.R | 1 R/scene.R | 117 +++- R/shiny.R | 10 R/stl.R | 3 R/subscenes.R | 4 R/zzz.R | 2 README.md | 35 - inst/doc/WebGL.R | 35 - inst/doc/WebGL.Rmd | 65 +- inst/doc/WebGL.html | 125 ++-- inst/doc/pkgdown.R | 6 inst/doc/pkgdown.Rmd | 11 inst/doc/pkgdown.html | 10 inst/doc/rgl.Rmd | 21 inst/doc/rgl.html | 686 ++++++++++++------------ inst/doc/transparency.html | 1 inst/htmlwidgets/lib/rglClass/axes.src.js | 17 inst/htmlwidgets/lib/rglClass/buffer.src.js |only inst/htmlwidgets/lib/rglClass/draw.src.js | 41 + inst/htmlwidgets/lib/rglClass/init.src.js | 270 ++++++--- inst/htmlwidgets/lib/rglClass/projection.src.js | 24 inst/htmlwidgets/lib/rglClass/rglClass.min.js |only inst/htmlwidgets/lib/rglClass/shaders.src.js | 38 - inst/htmlwidgets/lib/rglClass/textures.src.js | 14 inst/htmlwidgets/lib/rglClass/utils.src.js | 86 ++- man/Buffer.Rd |only man/ageControl.Rd | 6 man/ageSetter.Rd | 2 man/as.mesh3d.rglId.Rd | 7 man/as.rglscene.Rd |only man/bgplot3d.Rd | 11 man/checkDeldir.Rd |only man/clipMesh3d.Rd | 8 man/clipplaneControl.Rd | 7 man/decorate3d.Rd | 5 man/figures/READMEpolyhedra-1-rgl.png |binary man/getBoundary3d.Rd |only man/light.Rd | 3 man/makeDependency.Rd | 39 - man/material.Rd | 36 + man/matrices.Rd | 13 man/open3d.Rd | 4 man/par3d.Rd | 6 man/persp3d.Rd | 4 man/persp3d.deldir.Rd | 3 man/play3d.Rd | 4 man/plot3d.Rd | 5 man/plot3d.formula.Rd | 2 man/plotmath3d.Rd | 6 man/primitive.Rd | 13 man/propertyControl.Rd | 7 man/readSTL.Rd | 7 man/rgl.fns.Rd | 11 man/rgl.texts.Rd | 16 man/scene.Rd | 14 man/shade3d.Rd | 22 man/sprites.Rd | 36 + man/subscene3d.Rd | 8 man/tagged3d.Rd |only man/texts.Rd | 5 man/toggleWidget.Rd | 11 man/turn3d.Rd | 1 man/vertexControl.Rd | 6 man/writeASY.Rd | 7 man/writeOBJ.Rd | 7 man/writePLY.Rd | 6 src/BBoxDeco.cpp | 2 src/BBoxDeco.h | 12 src/Background.cpp | 2 src/LineSet.cpp | 6 src/LineStripSet.cpp | 6 src/Makevars.ucrt | 10 src/Material.cpp | 1 src/Material.h | 2 src/PointSet.cpp | 6 src/PrimitiveSet.cpp | 118 +++- src/PrimitiveSet.h | 50 + src/SceneNode.h | 1 src/SpriteSet.cpp | 190 +++++- src/SpriteSet.h | 7 src/TextSet.cpp | 7 src/TextSet.h | 3 src/api.cpp | 85 +- src/api.h | 4 src/fps.cpp | 2 src/glgui.cpp | 49 + src/glgui.h | 27 src/init.cpp | 7 src/par3d.cpp | 6 src/rglmath.cpp | 10 src/subscene.cpp | 29 - src/subscene.h | 3 tests/bbox3dtests.R |only tests/boundary.R |only tests/indices.R |only tests/testthat/conversions.R |only tests/testthat/test-tags.R |only tests/testthat/testdata/mergeVertices.rds |binary tests/testthat/testdata/obj.rds |binary tests/testthat/testdata/qmesh3d.rds |binary tests/testthat/testdata/r3d.rds |binary tests/testthat/testdata/shade3detc.rds |binary tests/testthat/testdata/subscenes.rds |binary tests/testthat/testdata/tmesh3d.rds |binary tests/testthat/testdata/transformations.rds |binary vignettes/WebGL.Rmd | 65 +- vignettes/pkgdown.Rmd | 11 vignettes/rgl.Rmd | 21 133 files changed, 2140 insertions(+), 1184 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
(<https://orcid.org/0000-0003-4668-6821>)
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.1 dated 2021-05-18 and 2.4.6 dated 2021-11-21
DESCRIPTION | 19 +++++++++---------- MD5 | 24 ++++++++++++++++-------- NAMESPACE | 5 +++++ R/accuracy.r | 3 +-- R/cldList.r | 37 ++++++++++++++++++++++++------------- R/countRSquare.r |only R/efronRSquared.r |only R/nagelkerke.r | 6 +++--- R/oneSampleDominance.r |only R/pairedSampleDominance.r |only man/accuracy.Rd | 2 +- man/cldList.Rd | 39 +++++++++++++++++++++++++-------------- man/countRSquare.Rd |only man/efronRSquared.Rd |only man/nagelkerke.Rd | 6 +++--- man/oneSampleDominance.Rd |only man/pairedSampleDominance.Rd |only 17 files changed, 87 insertions(+), 54 deletions(-)
Title: Functions for the Lognormal Distribution
Description: The lognormal distribution
(Limpert et al. (2001) <doi:10.1641/0006-3568(2001)051%5B0341:lndats%5D2.0.co;2>)
can characterize uncertainty that is bounded by zero.
This package provides estimation of distribution parameters, computation of
moments and other basic statistics, and an approximation of the distribution
of the sum of several correlated lognormally distributed variables
(Lo 2013 <doi:10.12988/ams.2013.39511>) and the approximation of the
difference of two correlated lognormally distributed variables
(Lo 2012 <doi:10.1155/2012/838397>).
Author: Thomas Wutzler
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between lognorm versions 0.1.9 dated 2021-03-10 and 0.1.10 dated 2021-11-21
DESCRIPTION | 7 MD5 | 12 - build/vignette.rds |binary inst/doc/lognorm.html | 221 ++--------------------- inst/doc/lognormalDiff.html | 369 ++++++++++------------------------------ inst/doc/lognormalSum.html | 281 +++++------------------------- tests/testthat/test_CoefLnorm.R | 3 7 files changed, 181 insertions(+), 712 deletions(-)
Title: Extreme Gradient Boosting
Description: Extreme Gradient Boosting, which is an efficient implementation
of the gradient boosting framework from Chen & Guestrin (2016) <doi:10.1145/2939672.2939785>.
This package is its R interface. The package includes efficient linear
model solver and tree learning algorithms. The package can automatically
do parallel computation on a single machine which could be more than 10
times faster than existing gradient boosting packages. It supports
various objective functions, including regression, classification and ranking.
The package is made to be extensible, so that users are also allowed to define
their own objectives easily.
Author: Tianqi Chen [aut],
Tong He [aut, cre],
Michael Benesty [aut],
Vadim Khotilovich [aut],
Yuan Tang [aut] (<https://orcid.org/0000-0001-5243-233X>),
Hyunsu Cho [aut],
Kailong Chen [aut],
Rory Mitchell [aut],
Ignacio Cano [aut],
Tianyi Zhou [aut],
Mu Li [aut],
Junyuan Xie [aut],
Min Lin [aut],
Yifeng Geng [aut],
Yutian Li [aut],
XGBoost contributors [cph] (base XGBoost implementation)
Maintainer: Tong He <hetong007@gmail.com>
Diff between xgboost versions 1.5.0.1 dated 2021-11-08 and 1.5.0.2 dated 2021-11-21
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- inst/doc/discoverYourData.html | 10 +++++----- inst/doc/xgboost.pdf |binary inst/doc/xgboostPresentation.html | 24 ++++++++++++------------ inst/doc/xgboostfromJSON.html | 2 +- src/include/xgboost/data.h | 2 +- src/src/data/simple_dmatrix.h | 8 ++++---- src/src/tree/updater_colmaker.cc | 27 ++++++++++++++------------- src/src/tree/updater_quantile_hist.cc | 3 --- src/src/tree/updater_quantile_hist.h | 1 - tests/testthat/test_helpers.R | 2 +- 12 files changed, 53 insertions(+), 56 deletions(-)
Title: Custom 'xaringan' CSS Themes
Description: Create beautifully color-coordinated and customized themes
for your 'xaringan' slides, without writing any CSS. Complete your
slide theme with 'ggplot2' themes that match the font and colors used
in your slides. Customized styles can be created directly in your
slides' 'R Markdown' source file or in a separate external script.
Author: Garrick Aden-Buie [aut, cre] (<https://orcid.org/0000-0002-7111-0077>)
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between xaringanthemer versions 0.4.0 dated 2021-06-24 and 0.4.1 dated 2021-11-21
xaringanthemer-0.4.0/xaringanthemer/tests/testthat/css/duo_header-bg.css |only xaringanthemer-0.4.0/xaringanthemer/tests/testthat/google-font-print.txt |only xaringanthemer-0.4.1/xaringanthemer/DESCRIPTION | 30 +- xaringanthemer-0.4.1/xaringanthemer/MD5 | 108 +++++----- xaringanthemer-0.4.1/xaringanthemer/NEWS.md | 17 + xaringanthemer-0.4.1/xaringanthemer/R/color.R | 12 - xaringanthemer-0.4.1/xaringanthemer/R/ggplot2.R | 14 - xaringanthemer-0.4.1/xaringanthemer/R/style_extra_css.R | 2 xaringanthemer-0.4.1/xaringanthemer/R/style_xaringan.R | 30 +- xaringanthemer-0.4.1/xaringanthemer/R/utils_theme-gen.R | 4 xaringanthemer-0.4.1/xaringanthemer/R/xaringanthemer-package.R | 12 - xaringanthemer-0.4.1/xaringanthemer/README.md | 8 xaringanthemer-0.4.1/xaringanthemer/inst/doc/xaringanthemer.html | 4 xaringanthemer-0.4.1/xaringanthemer/inst/resources/template.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/inst/rmarkdown/templates/xaringanthemer/skeleton/skeleton.Rmd | 12 - xaringanthemer-0.4.1/xaringanthemer/inst/rmarkdown/templates/xaringanthemer/skeleton/xaringan-themer.css |only xaringanthemer-0.4.1/xaringanthemer/man/apply_alpha.Rd | 1 xaringanthemer-0.4.1/xaringanthemer/man/choose_dark_or_light.Rd | 1 xaringanthemer-0.4.1/xaringanthemer/man/figures/index-theme_xaringan_demo-1.png |binary xaringanthemer-0.4.1/xaringanthemer/man/fragments/_colors.Rmd | 2 xaringanthemer-0.4.1/xaringanthemer/man/fragments/_themes.Rmd | 2 xaringanthemer-0.4.1/xaringanthemer/man/lighten_darken_color.Rd | 1 xaringanthemer-0.4.1/xaringanthemer/man/scale_xaringan.Rd | 1 xaringanthemer-0.4.1/xaringanthemer/man/style_duo.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_duo_accent.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_duo_accent_inverse.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_mono_accent.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_mono_accent_inverse.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_mono_dark.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_mono_light.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_solarized_dark.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_solarized_light.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/style_xaringan.Rd | 2 xaringanthemer-0.4.1/xaringanthemer/man/theme_xaringan_get_value.Rd | 1 xaringanthemer-0.4.1/xaringanthemer/man/xaringanthemer-package.Rd | 7 xaringanthemer-0.4.1/xaringanthemer/tests/testthat/_snaps |only xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/duo-header_bg.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/duo.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/duo_accent.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/duo_accent_inverse.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/google_fonts.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/mono_accent.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/mono_accent_inverse.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/mono_dark.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/mono_light-header_bg.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/mono_light.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/solarized_dark-header_bg.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/solarized_dark.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/solarized_light.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/css/xaringan.css | 30 ++ xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-color.R | 16 + xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-css.R | 4 xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-ggplot2.R | 16 - xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-helpers.R | 1 xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-style_xaringan.R | 1 xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-themes.R | 39 ++- xaringanthemer-0.4.1/xaringanthemer/tests/testthat/test-utils.R | 5 57 files changed, 648 insertions(+), 173 deletions(-)
More information about xaringanthemer at CRAN
Permanent link
Title: Simple Methods for Calculating Value at Risk and Expected
Shortfall
Description: Enables the user to calculate Value at Risk (VaR)
and Expected Shortfall (ES) by means of various types of historical
simulation. Currently plain-, age-, volatility-weighted- and filtered
historical simulation are implemented in this package. Volatility weighting
can be carried out via an exponentially weighted moving average model
(EWMA) or other GARCH-type models. The methods of the package are described in
Gurrola-Perez, P. and Murphy, D. (2015)
<https://EconPapers.repec.org/RePEc:boe:boeewp:0525>.
Author: Sebastian Letmathe [aut, cre] (Paderborn University, Germany)
Maintainer: Sebastian Letmathe <sebastian.letmathe@uni-paderborn.de>
Diff between quarks versions 1.0.9 dated 2021-09-06 and 1.0.10 dated 2021-11-21
DESCRIPTION | 6 - MD5 | 38 ++++---- NAMESPACE | 1 NEWS.md | 4 R/fhs.R | 5 - R/hs.R | 3 R/print.quarks.R |only R/rollcast.R | 31 +++++- R/vwhs.R | 3 README.md | 144 +++++++++++++++++++++++++++++-- man/fhs.Rd | 1 man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/hs.Rd | 1 man/print.quarks.Rd |only man/rollcast.Rd | 16 ++- man/vwhs.Rd | 1 21 files changed, 209 insertions(+), 45 deletions(-)
Title: Board Game Graphics
Description: Functions to make board game graphics. Specializes in game diagrams, animations, and "Print & Play" layouts for the 'piecepack' <https://www.ludism.org/ppwiki> but can make graphics for other board game systems. Includes configurations for several public domain game systems.
Author: Trevor L Davis [aut, cre],
Delapouite <https://delapouite.com/> [dtc] (Meeple shape extracted from
"Meeple icon" <https://game-icons.net/1x1/delapouite/meeple.html> /
"CC BY 3.0" <https://creativecommons.org/licenses/by/3.0/>)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between piecepackr versions 1.9.1 dated 2021-11-12 and 1.9.2 dated 2021-11-21
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 12 ++++++++++++ R/game_systems.R | 1 + R/save_piece_obj.R | 4 ++-- R/sysdata.rda |binary R/utils-composite.R | 6 ++++++ man/save_piece_obj.Rd | 4 ++-- 8 files changed, 34 insertions(+), 15 deletions(-)
Title: Loading a JAGS Module for the Piecewise Exponential Distribution
Description: Load the Just Another Gibbs Sampling (JAGS) module 'pexm'. The module provides the tools to work with the Piecewise Exponential (PE) distribution in a Bayesian model with the corresponding Markov Chain Monte Carlo algorithm (Gibbs Sampling) implemented via JAGS. Details about the module implementation can be found in Mayrink et al. (2021) <doi:10.18637/jss.v100.i08>.
Author: Vinicius Mayrink [aut, cre] (<https://orcid.org/0000-0002-5683-8326>),
Joao Duarte [aut],
Fabio Demarqui [ctb] (<https://orcid.org/0000-0001-9236-1986>)
Maintainer: Vinicius Mayrink <vdinizm@gmail.com>
Diff between pexm versions 1.0.1 dated 2021-10-08 and 1.1.1 dated 2021-11-21
DESCRIPTION | 8 ++++---- MD5 | 15 ++++++++------- NEWS | 2 ++ R/loadpexm.R | 4 ++-- R/pexm.R | 4 ++-- README.md | 4 ++-- inst |only man/loadpexm.Rd | 4 ++-- man/pexm.Rd | 4 ++-- 9 files changed, 24 insertions(+), 21 deletions(-)
Title: Identifying Interactions Between Binary Predictors
Description: A global statistical learning method
which tries to find the best set of predictors and interactions
between predictors for modeling binary or quantitative response data.
Several search algorithms and ensembling techniques are implemented
allowing for finetuning the method to the specific problem.
Interactions with single quantitative covariables can be properly
taken into account by also splitting after those or by fitting
local four parameter logistic models.
Author: Michael Lau [aut, cre]
Maintainer: Michael Lau <michael.lau@hhu.de>
Diff between logicDT versions 1.0.0 dated 2021-11-19 and 1.0.1 dated 2021-11-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/partial.rdb |binary src/logicDT.c | 22 +++++++++++----------- src/logicDT.h | 16 ++++++++-------- 5 files changed, 26 insertions(+), 26 deletions(-)
Title: High Mach Finds Routes for Supersonic Aircraft
Description: For supersonic aircraft, flying subsonic over land,
High Mach finds the best route between airports. Allows for coastal buffer and
potentially closed regions. Uses a minimal model of aircraft
performance: the focus is on time saved versus subsonic flight, rather
than on vertical flight profile. For modelling and forecasting, not for planning your
flight!
Author: David Marsh [aut, cre],
EUROCONTROL [fnd, cph]
Maintainer: David Marsh <david.marsh@eurocontrol.int>
Diff between himach versions 0.2.1 dated 2021-06-17 and 0.2.2 dated 2021-11-21
DESCRIPTION | 16 ++--- MD5 | 58 +++++++++--------- NAMESPACE | 1 NEWS.md | 6 + R/cache.R | 10 ++- R/data.R | 32 ++++++++-- R/grids.R | 33 +++++++++- R/maps.R | 7 -- R/routes.R | 21 ++++-- R/utils.R | 2 README.md | 2 build/vignette.rds |binary data/crs_120E.rda |only data/crs_Atlantic.rda |binary data/crs_N.rda |binary data/crs_Pacific.rda |binary data/crs_S.rda |binary data/crs_longlat.rda |binary inst/doc/Supersonic_Routes.Rmd | 2 inst/doc/Supersonic_Routes.html | 47 +++++++-------- inst/doc/Supersonic_Routes_in_depth.R | 1 inst/doc/Supersonic_Routes_in_depth.Rmd | 1 inst/doc/Supersonic_Routes_in_depth.html | 96 +++++++++++++++---------------- man/crs_120E.Rd |only man/crs_Atlantic.Rd | 7 +- man/crs_N.Rd | 2 man/crs_Pacific.Rd | 6 + man/crs_S.Rd | 2 man/map_routes.Rd | 2 vignettes/Supersonic_Routes.Rmd | 2 vignettes/Supersonic_Routes_in_depth.Rmd | 1 31 files changed, 208 insertions(+), 149 deletions(-)
Title: Joint Dimension Reduction and Spatial Clustering
Description: Joint dimension reduction and spatial clustering is conducted for
Single-cell RNA sequencing and spatial transcriptomics data, and more details can be referred to
Yi Yang, Xingjie Shi, Wei Liu et al. (2021) <doi:10.1101/2021.06.05.447181>. It is not only computationally efficient and scalable to the sample size increment, but also is capable of choosing the smoothness parameter and the number of clusters as well.
Author: Wei Liu [aut, cre],
Xingjie Shi [aut],
Jin Liu [aut]
Maintainer: Wei Liu <wei.liu@duke-nus.edu.sg>
Diff between DR.SC versions 2.2 dated 2021-11-19 and 2.3 dated 2021-11-21
DR.SC-2.2/DR.SC/src/main_fun.cpp |only DR.SC-2.3/DR.SC/DESCRIPTION | 8 ++++---- DR.SC-2.3/DR.SC/MD5 | 19 +++++++++---------- DR.SC-2.3/DR.SC/inst/doc/DR.SC.HCC1.html | 4 ++-- DR.SC-2.3/DR.SC/inst/doc/DR.SC.Simu.html | 4 ++-- DR.SC-2.3/DR.SC/src/Makevars.win | 2 +- DR.SC-2.3/DR.SC/src/getNB_fast.cpp | 1 - DR.SC-2.3/DR.SC/src/simulDRcluster_main.cpp | 6 +++--- DR.SC-2.3/DR.SC/src/utilSimulDRcluster.cpp | 7 +++---- DR.SC-2.3/DR.SC/src/utilSimulDRcluster.h | 8 ++++---- DR.SC-2.3/DR.SC/src/wpca.cpp | 1 - 11 files changed, 28 insertions(+), 32 deletions(-)
Title: Model Based Clustering of Binary Dissimilarity Measurements
Description: Functions for fitting a Bayesian model for grouping binary
dissimilarity matrices in homogeneous clusters. Currently, it includes
methods only for binary data (<doi:10.18637/jss.v100.i16>).
Author: Sergio Venturini [aut, cre],
Raffaella Piccarreta [ctb]
Maintainer: Sergio Venturini <sergio.venturini@unicatt.it>
Diff between dmbc versions 0.4.0 dated 2020-08-01 and 1.0.0 dated 2021-11-21
DESCRIPTION | 16 +-- MD5 | 143 ++++++++++++++++----------------- R/bmds.R | 10 +- R/convert.R | 6 - R/dmbc-package.R | 6 - R/dmbc.R | 6 - R/dmbc_classes.R | 82 +++++++++--------- R/dmbc_control.R | 2 R/dmbc_fit.R | 18 ++-- R/dmbc_ic.R | 6 - R/dmbc_init.R | 6 - R/dmbc_prior.R | 2 R/extract.R | 42 ++++----- R/utils.R | 2 inst/CITATION |only man/adjust_x.Rd | 2 man/bmds.Rd | 2 man/bmds_get_x_mode.Rd | 2 man/check_list_na.Rd | 2 man/clusters-dmbc_config-method.Rd | 2 man/comp_ssr.Rd | 2 man/dmbc-package.Rd | 6 - man/dmbc.Rd | 6 - man/dmbc_IC.Rd | 6 - man/dmbc_check_groups.Rd | 6 - man/dmbc_config-class.Rd | 4 man/dmbc_control.Rd | 2 man/dmbc_data-class.Rd | 6 - man/dmbc_fit-class.Rd | 4 man/dmbc_fit.Rd | 6 - man/dmbc_fit_list-class.Rd | 4 man/dmbc_fit_list_to_list.Rd | 2 man/dmbc_fit_list_to_mcmc.list.Rd | 2 man/dmbc_fit_to_mcmc.Rd | 2 man/dmbc_get_configuration.Rd | 6 - man/dmbc_get_map.Rd | 6 - man/dmbc_get_ml.Rd | 6 - man/dmbc_get_postmean.Rd | 6 - man/dmbc_get_postmedian.Rd | 6 - man/dmbc_ic-class.Rd | 4 man/dmbc_init.Rd | 6 - man/dmbc_logLik.Rd | 6 - man/dmbc_logLik_rbmds.Rd | 6 - man/dmbc_match_groups.Rd | 6 - man/dmbc_model-class.Rd | 4 man/dmbc_prior.Rd | 2 man/initialize-dmbc_config-method.Rd | 2 man/initialize-dmbc_data-method.Rd | 2 man/initialize-dmbc_fit-method.Rd | 2 man/initialize-dmbc_fit_list-method.Rd | 2 man/initialize-dmbc_ic-method.Rd | 2 man/initialize-dmbc_model-method.Rd | 2 man/mdsic.Rd | 2 man/plot-dmbc_config-ANY-method.Rd | 2 man/plot-dmbc_data-ANY-method.Rd | 2 man/plot-dmbc_fit-ANY-method.Rd | 2 man/plot-dmbc_fit_list-ANY-method.Rd | 2 man/plot-dmbc_ic-ANY-method.Rd | 2 man/show-dmbc_config-method.Rd | 2 man/show-dmbc_data-method.Rd | 2 man/show-dmbc_fit-method.Rd | 2 man/show-dmbc_fit_list-method.Rd | 2 man/show-dmbc_ic-method.Rd | 2 man/show-dmbc_model-method.Rd | 2 man/subset-dmbc_fit-method.Rd | 2 man/subset-dmbc_fit_list-method.Rd | 2 man/summary-dmbc_config-method.Rd | 2 man/summary-dmbc_data-method.Rd | 2 man/summary-dmbc_fit-method.Rd | 2 man/summary-dmbc_fit_list-method.Rd | 2 man/summary-dmbc_ic-method.Rd | 2 man/update-dmbc_ic-method.Rd | 6 - src/RcppExports.cpp | 5 + 73 files changed, 273 insertions(+), 267 deletions(-)
Title: High-Dimensional Regression and CAR Score Variable Selection
Description: Implements the regression approach
of Zuber and Strimmer (2011) "High-dimensional regression and variable
selection using CAR scores" SAGMB 10: 34, <DOI:10.2202/1544-6115.1730>.
CAR scores measure the correlation between the response and the
Mahalanobis-decorrelated predictors. The squared CAR score is a
natural measure of variable importance and provides a canonical
ordering of variables. This package provides functions for estimating
CAR scores, for variable selection using CAR scores, and for estimating
corresponding regression coefficients. Both shrinkage as well as
empirical estimators are available.
Author: Verena Zuber and Korbinian Strimmer.
Maintainer: Korbinian Strimmer <strimmerlab@gmail.com>
Diff between care versions 1.1.10 dated 2017-03-29 and 1.1.11 dated 2021-11-21
DESCRIPTION | 13 +++++++------ MD5 | 12 ++++++------ NEWS | 5 +++++ man/care.package.Rd | 4 ++-- man/carscore.Rd | 2 +- man/lu2004.Rd | 2 +- man/slm.Rd | 2 +- 7 files changed, 23 insertions(+), 17 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction and maximum penalized likelihood with powers of the Jeffreys prior as penalty. The 'brglmFit' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reduction adjusted score equations in Kenne et al. (2017) <doi:10.1093/biomet/asx046>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <https://www.jstor.org/stable/2345592>. See Kosmidis et al (2020) <doi:10.1007/s11222-019-09860-6> for more details. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bias estimates are provided. In the special case of generalized linear models for binomial and multinomial responses (both ordinal and nominal), the adjusted score approaches to mean and media bias reduction have been found to return estimates with improved frequentist properties, that are also always finite, even in cases where the maximum likelihood estimates are infinite (e.g. complete and quasi-complete separation; see Kosmidis and Firth, 2020 <doi:10.1093/biomet/asaa052>, for a proof for mean bias reduction in logistic regression).
Author: Ioannis Kosmidis [aut, cre] (<https://orcid.org/0000-0003-1556-0302>),
Euloge Clovis Kenne Pagui [aut],
Kjell Konis [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between brglm2 versions 0.8.1 dated 2021-09-27 and 0.8.2 dated 2021-11-21
brglm2-0.8.1/brglm2/inst/empir_tests.R |only brglm2-0.8.1/brglm2/inst/empirical_br_tests.R |only brglm2-0.8.1/brglm2/inst/franscisco |only brglm2-0.8.1/brglm2/inst/maize-EckDaniel |only brglm2-0.8.2/brglm2/DESCRIPTION | 11 brglm2-0.8.2/brglm2/MD5 | 43 +-- brglm2-0.8.2/brglm2/NEWS.md | 7 brglm2-0.8.2/brglm2/README.md | 26 -- brglm2-0.8.2/brglm2/build/partial.rdb |binary brglm2-0.8.2/brglm2/build/vignette.rds |binary brglm2-0.8.2/brglm2/inst/doc/adjacent.Rmd | 2 brglm2-0.8.2/brglm2/inst/doc/adjacent.html | 200 ++++++++++++++++ brglm2-0.8.2/brglm2/inst/doc/iteration.Rmd | 4 brglm2-0.8.2/brglm2/inst/doc/iteration.html | 206 ++++++++++++++++ brglm2-0.8.2/brglm2/inst/doc/multinomial.Rmd | 2 brglm2-0.8.2/brglm2/inst/doc/multinomial.html | 257 ++++++++++++++++++--- brglm2-0.8.2/brglm2/inst/doc/negativeBinomial.Rmd | 2 brglm2-0.8.2/brglm2/inst/doc/negativeBinomial.html | 202 ++++++++++++++++ brglm2-0.8.2/brglm2/vignettes/adjacent.Rmd | 2 brglm2-0.8.2/brglm2/vignettes/iteration.Rmd | 4 brglm2-0.8.2/brglm2/vignettes/multinomial.Rmd | 2 brglm2-0.8.2/brglm2/vignettes/negativeBinomial.Rmd | 2 22 files changed, 868 insertions(+), 104 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Müller [aut, cre] (<https://orcid.org/0000-0002-1416-3412>),
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
energie360° AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Müller <krlmlr+r@mailbox.org>
Diff between dm versions 0.2.5 dated 2021-10-15 and 0.2.6 dated 2021-11-21
DESCRIPTION | 18 +- MD5 | 108 +++++++------ NEWS.md | 22 ++ R/check-cardinalities.R | 126 +++++++++------- R/data-model-helpers.R | 5 R/disambiguate.R | 61 +++++-- R/error-helpers.R | 31 +++ R/examine-constraints.R | 2 R/global.R | 14 + R/key-helpers.R | 67 +++----- R/paste.R | 7 R/pixarfilms.R |only R/schema.R | 1 R/table-surgery.R | 2 README.md | 77 +++++---- inst/doc/dm.html | 44 ++--- inst/doc/howto-dm-copy.html | 19 +- inst/doc/howto-dm-db.html | 26 +-- inst/doc/howto-dm-df.html | 6 inst/doc/howto-dm-rows.html | 4 inst/doc/howto-dm-theory.html | 20 +- inst/doc/tech-dm-cdm.html | 4 inst/doc/tech-dm-class.html | 14 - inst/doc/tech-dm-draw.html | 4 inst/doc/tech-dm-filter.html | 22 +- inst/doc/tech-dm-join.html | 12 - inst/doc/tech-dm-low-level.html | 10 - man/check_set_equality.Rd | 8 - man/check_subset.Rd | 12 - man/examine_cardinality.Rd | 64 ++++---- man/figures/README-draw.svg | 85 ++++++---- tests/testthat/_snaps/bind.md | 4 tests/testthat/_snaps/check-cardinalities.md | 21 ++ tests/testthat/_snaps/disambiguate.md | 8 - tests/testthat/_snaps/dplyr.md | 61 ++++--- tests/testthat/_snaps/draw-dm.md | 9 - tests/testthat/_snaps/draw-dm/empty-table-in-dm.svg |only tests/testthat/_snaps/draw-dm/single-empty-table-dm.svg |only tests/testthat/_snaps/error-helpers.md | 10 - tests/testthat/_snaps/examine-constraints.md | 16 +- tests/testthat/_snaps/key-helpers.md | 31 +++ tests/testthat/_snaps/paste.md | 34 +++- tests/testthat/_snaps/rows-db.md | 3 tests/testthat/_snaps/rows-dm.md | 2 tests/testthat/_snaps/testthat-legacy |only tests/testthat/helper-src.R | 3 tests/testthat/test-check-cardinalities.R | 65 ++++++++ tests/testthat/test-db-interface.R | 10 - tests/testthat/test-draw-dm.R | 13 + tests/testthat/test-error-helpers.R | 2 tests/testthat/test-flatten.R | 2 tests/testthat/test-key-helpers.R | 8 - tests/testthat/test-learn.R | 2 tests/testthat/test-paste.R | 17 ++ tests/testthat/test-rows-db.R | 4 tests/testthat/test-schema.R | 14 - tests/testthat/test-table-surgery.R | 6 57 files changed, 777 insertions(+), 463 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as 'SQLite/JSON1'.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.4.3 dated 2021-07-23 and 0.5.0 dated 2021-11-21
nodbi-0.4.3/nodbi/R/src_redis.R |only nodbi-0.4.3/nodbi/man/src_redis.Rd |only nodbi-0.4.3/nodbi/tests/testthat/test-redis.R |only nodbi-0.5.0/nodbi/DESCRIPTION | 26 nodbi-0.5.0/nodbi/MD5 | 78 +- nodbi-0.5.0/nodbi/NAMESPACE | 16 nodbi-0.5.0/nodbi/NEWS.md | 33 + nodbi-0.5.0/nodbi/R/create.R | 626 +++++++++++--------- nodbi-0.5.0/nodbi/R/delete.R | 192 +++--- nodbi-0.5.0/nodbi/R/exists.R | 86 -- nodbi-0.5.0/nodbi/R/get.R | 202 +++--- nodbi-0.5.0/nodbi/R/list.R |only nodbi-0.5.0/nodbi/R/nodbi-package.R | 32 - nodbi-0.5.0/nodbi/R/query.R | 716 +++++++++++++----------- nodbi-0.5.0/nodbi/R/src.R | 22 nodbi-0.5.0/nodbi/R/src_couchdb.R | 15 nodbi-0.5.0/nodbi/R/src_elasticsearch.R | 10 nodbi-0.5.0/nodbi/R/src_mongo.R | 44 + nodbi-0.5.0/nodbi/R/src_sqlite.R | 13 nodbi-0.5.0/nodbi/R/update.R | 544 ++++++++---------- nodbi-0.5.0/nodbi/R/zzz.R | 23 nodbi-0.5.0/nodbi/man/contacts.Rd | 6 nodbi-0.5.0/nodbi/man/diamonds.Rd | 4 nodbi-0.5.0/nodbi/man/docdb_create.Rd | 84 +- nodbi-0.5.0/nodbi/man/docdb_delete.Rd | 63 -- nodbi-0.5.0/nodbi/man/docdb_exists.Rd | 60 -- nodbi-0.5.0/nodbi/man/docdb_get.Rd | 69 -- nodbi-0.5.0/nodbi/man/docdb_list.Rd |only nodbi-0.5.0/nodbi/man/docdb_query.Rd | 94 --- nodbi-0.5.0/nodbi/man/docdb_update.Rd | 88 +- nodbi-0.5.0/nodbi/man/mapdata.Rd | 6 nodbi-0.5.0/nodbi/man/nodbi-defunct.Rd | 4 nodbi-0.5.0/nodbi/man/nodbi-package.Rd | 7 nodbi-0.5.0/nodbi/man/src.Rd | 22 nodbi-0.5.0/nodbi/man/src_couchdb.Rd | 4 nodbi-0.5.0/nodbi/man/src_mongo.Rd | 12 nodbi-0.5.0/nodbi/man/src_redis-defunct.Rd |only nodbi-0.5.0/nodbi/man/src_sqlite.Rd | 4 nodbi-0.5.0/nodbi/tests/testthat/core-nodbi.R |only nodbi-0.5.0/nodbi/tests/testthat/helper-nodbi.R | 30 - nodbi-0.5.0/nodbi/tests/testthat/test-couchdb.R | 100 --- nodbi-0.5.0/nodbi/tests/testthat/test-elastic.R |only nodbi-0.5.0/nodbi/tests/testthat/test-mongodb.R | 219 ------- nodbi-0.5.0/nodbi/tests/testthat/test-sqlite.R | 409 ------------- 44 files changed, 1708 insertions(+), 2255 deletions(-)
Title: MareFrame DB Querying Library
Description: Creates and manages a PostgreSQL database suitable for storing fisheries data
and aggregating ready for use within a Gadget <https://gadget-framework.github.io/gadget2/> model.
See <https://mareframe.github.io/mfdb/> for more information.
Author: Jamie Lentin [aut, cre, cph],
Bjarki Thor Elvarsson [aut]
Maintainer: Jamie Lentin <lentinj@shuttlethread.com>
Diff between mfdb versions 7.1-1 dated 2021-10-09 and 7.2-0 dated 2021-11-21
ChangeLog | 7 +++++++ DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NAMESPACE | 1 + R/mfdb_dplyr.R | 31 +++++++++++++++++-------------- R/mfdb_import_data.R | 5 +++-- R/mfdb_sql.R | 9 ++++++++- build/vignette.rds |binary demo/inttest-dplyr.R | 8 ++++++++ demo/inttest-landings.R | 8 ++++---- man/gadget_fleetfile.Rd | 2 +- man/gadget_stockfile.Rd | 2 +- man/mfdb_dplyr.Rd | 9 +++++++++ man/mfdb_queries.Rd | 2 +- 14 files changed, 77 insertions(+), 41 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-19 0.99.95
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-17 0.2.0
2018-07-01 0.1.0
Title: Salary Analysis by the Swiss Federal Office for Gender Equality
Description: Implementation of the Swiss Confederation's standard analysis model for salary analyses <https://www.ebg.admin.ch/dam/ebg/en/dokumente/lohngleichheit/infos-zu-analysen/standard-analysemodellzurueberpruefungderlohngleichheitzwischenf.pdf.download.pdf/methodological_approachformonitoringcompliancewithwageequalitybe.pdf> in R. The analysis is run at company-level and the model is intended for companies with 50 or more employees (apprentices, trainees/interns and expats are not included in the analysis). Employees with at least 100 employees are required by the Gender Equality Act to conduct an equal pay analysis.
This package allows users to run the equal salary analysis in R, providing additional transparency with respect to the methodology and simple automation possibilities.
Author: Jonathan Chassot [aut, cre],
Jeremy Kolly [ctb],
Federal Office for Gender Equality of Switzerland [cph, fnd]
Maintainer: Jonathan Chassot <jonathanlaurentdominique.chassot@ebg.admin.ch>
Diff between logib versions 0.1.1 dated 2021-10-16 and 0.1.2 dated 2021-11-21
DESCRIPTION | 8 +- MD5 | 16 ++-- NAMESPACE | 9 +- NEWS.md | 4 - R/sysdata.rda |binary data/datalist_imprimerie.rda |binary man/analysis.Rd | 160 +++++++++++++++++++++--------------------- man/datalist_imprimerie.Rd | 82 ++++++++++----------- man/summary.analysis_model.Rd | 74 +++++++++---------- 9 files changed, 179 insertions(+), 174 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.4.0 dated 2021-10-16 and 2.5.0 dated 2021-11-21
soundgen-2.4.0/soundgen/R/input.R |only soundgen-2.4.0/soundgen/man/analyzeFolder.Rd |only soundgen-2.4.0/soundgen/man/getLoudnessFolder.Rd |only soundgen-2.4.0/soundgen/man/getRMSFolder.Rd |only soundgen-2.4.0/soundgen/man/modulationSpectrumFolder.Rd |only soundgen-2.4.0/soundgen/man/segmentFolder.Rd |only soundgen-2.4.0/soundgen/man/spectrogramFolder.Rd |only soundgen-2.5.0/soundgen/DESCRIPTION | 13 soundgen-2.5.0/soundgen/MD5 | 203 +- soundgen-2.5.0/soundgen/NAMESPACE | 5 soundgen-2.5.0/soundgen/NEWS | 20 soundgen-2.5.0/soundgen/R/SSM.R | 13 soundgen-2.5.0/soundgen/R/amplitude.R | 68 soundgen-2.5.0/soundgen/R/analyze.R | 156 - soundgen-2.5.0/soundgen/R/apps.R | 26 soundgen-2.5.0/soundgen/R/audSpec.R | 36 soundgen-2.5.0/soundgen/R/defaults.R |only soundgen-2.5.0/soundgen/R/duration.R | 6 soundgen-2.5.0/soundgen/R/filters.R | 42 soundgen-2.5.0/soundgen/R/formants.R | 41 soundgen-2.5.0/soundgen/R/invertModulSpec.R | 20 soundgen-2.5.0/soundgen/R/io.R |only soundgen-2.5.0/soundgen/R/loudness.R | 26 soundgen-2.5.0/soundgen/R/matchPars.R | 3 soundgen-2.5.0/soundgen/R/modulationSpectrum.R | 24 soundgen-2.5.0/soundgen/R/osc.R | 14 soundgen-2.5.0/soundgen/R/pitchTrackers.R | 240 +- soundgen-2.5.0/soundgen/R/postprocessing.R | 326 +-- soundgen-2.5.0/soundgen/R/presets.R | 356 --- soundgen-2.5.0/soundgen/R/prosody.R |only soundgen-2.5.0/soundgen/R/resample.R | 32 soundgen-2.5.0/soundgen/R/segment.R | 30 soundgen-2.5.0/soundgen/R/shiftFormants.R | 27 soundgen-2.5.0/soundgen/R/shiftPitch.R | 33 soundgen-2.5.0/soundgen/R/soundgen.R | 30 soundgen-2.5.0/soundgen/R/source.R | 18 soundgen-2.5.0/soundgen/R/spectralDescr.R | 1 soundgen-2.5.0/soundgen/R/spectrogram.R | 65 soundgen-2.5.0/soundgen/R/surprisal.R | 13 soundgen-2.5.0/soundgen/R/timeStretch.R | 10 soundgen-2.5.0/soundgen/R/utilities_analyze.R | 29 soundgen-2.5.0/soundgen/R/utilities_math.R | 334 +++ soundgen-2.5.0/soundgen/R/utilities_soundgen.R | 240 -- soundgen-2.5.0/soundgen/THANKS | 1 soundgen-2.5.0/soundgen/data/defaults_analyze.rda |binary soundgen-2.5.0/soundgen/inst/doc/acoustic_analysis.R | 41 soundgen-2.5.0/soundgen/inst/doc/acoustic_analysis.Rmd | 57 soundgen-2.5.0/soundgen/inst/doc/acoustic_analysis.html | 220 +- soundgen-2.5.0/soundgen/inst/doc/sound_generation.html | 1246 ++++++------- soundgen-2.5.0/soundgen/inst/shiny/annotation_app/server.R | 7 soundgen-2.5.0/soundgen/inst/shiny/annotation_app/ui.R | 3 soundgen-2.5.0/soundgen/inst/shiny/formant_app/server.R | 6 soundgen-2.5.0/soundgen/inst/shiny/pitch_app/server.R | 8 soundgen-2.5.0/soundgen/inst/shiny/pitch_app/ui.R | 7 soundgen-2.5.0/soundgen/man/ERBToHz.Rd |only soundgen-2.5.0/soundgen/man/HzToERB.Rd |only soundgen-2.5.0/soundgen/man/HzToNotes.Rd |only soundgen-2.5.0/soundgen/man/HzToSemitones.Rd | 6 soundgen-2.5.0/soundgen/man/addAM.Rd | 5 soundgen-2.5.0/soundgen/man/addFormants.Rd | 8 soundgen-2.5.0/soundgen/man/analyze.Rd | 127 - soundgen-2.5.0/soundgen/man/analyzeFrame.Rd | 11 soundgen-2.5.0/soundgen/man/audSpectrogram.Rd | 15 soundgen-2.5.0/soundgen/man/bandpass.Rd | 12 soundgen-2.5.0/soundgen/man/checkInputType.Rd | 2 soundgen-2.5.0/soundgen/man/convert_sec_to_hms.Rd | 2 soundgen-2.5.0/soundgen/man/def_form.Rd | 2 soundgen-2.5.0/soundgen/man/defaults_analyze.Rd | 2 soundgen-2.5.0/soundgen/man/defaults_analyze_pitchCand.Rd | 2 soundgen-2.5.0/soundgen/man/dot-addFormants.Rd | 5 soundgen-2.5.0/soundgen/man/dot-analyze.Rd | 15 soundgen-2.5.0/soundgen/man/dot-audSpectrogram.Rd | 7 soundgen-2.5.0/soundgen/man/dot-bandpass.Rd | 8 soundgen-2.5.0/soundgen/man/dot-fade.Rd |only soundgen-2.5.0/soundgen/man/dot-getLoudness.Rd | 2 soundgen-2.5.0/soundgen/man/dot-getSurprisal.Rd | 5 soundgen-2.5.0/soundgen/man/dot-prosody.Rd |only soundgen-2.5.0/soundgen/man/dot-shiftFormants.Rd | 5 soundgen-2.5.0/soundgen/man/dot-shiftPitch.Rd | 5 soundgen-2.5.0/soundgen/man/dot-spectrogram.Rd | 7 soundgen-2.5.0/soundgen/man/fade.Rd | 80 soundgen-2.5.0/soundgen/man/filled.contour.mod.Rd | 2 soundgen-2.5.0/soundgen/man/filterSoundByMS.Rd | 3 soundgen-2.5.0/soundgen/man/flatEnv.Rd | 4 soundgen-2.5.0/soundgen/man/flatSpectrum.Rd | 17 soundgen-2.5.0/soundgen/man/getCPP.Rd |only soundgen-2.5.0/soundgen/man/getDuration.Rd | 5 soundgen-2.5.0/soundgen/man/getLoudness.Rd | 8 soundgen-2.5.0/soundgen/man/getPitchCep.Rd | 14 soundgen-2.5.0/soundgen/man/getRMS.Rd | 5 soundgen-2.5.0/soundgen/man/getSurprisal.Rd | 8 soundgen-2.5.0/soundgen/man/htmlPlots.Rd | 32 soundgen-2.5.0/soundgen/man/modulationSpectrum.Rd | 3 soundgen-2.5.0/soundgen/man/osc.Rd | 3 soundgen-2.5.0/soundgen/man/permittedValues.Rd | 2 soundgen-2.5.0/soundgen/man/playme.Rd | 2 soundgen-2.5.0/soundgen/man/plotSpec.Rd | 7 soundgen-2.5.0/soundgen/man/processAudio.Rd | 21 soundgen-2.5.0/soundgen/man/prosody.Rd |only soundgen-2.5.0/soundgen/man/readAudio.Rd | 2 soundgen-2.5.0/soundgen/man/reportTime.Rd | 16 soundgen-2.5.0/soundgen/man/resample.Rd | 3 soundgen-2.5.0/soundgen/man/reverb.Rd | 3 soundgen-2.5.0/soundgen/man/segment.Rd | 3 soundgen-2.5.0/soundgen/man/shiftFormants.Rd | 8 soundgen-2.5.0/soundgen/man/shiftPitch.Rd | 10 soundgen-2.5.0/soundgen/man/spectrogram.Rd | 13 soundgen-2.5.0/soundgen/man/splitIntoChunks.Rd |only soundgen-2.5.0/soundgen/man/ssm.Rd | 3 soundgen-2.5.0/soundgen/man/timeStretch.Rd | 5 soundgen-2.5.0/soundgen/man/writeAudio.Rd |only soundgen-2.5.0/soundgen/vignettes/acoustic_analysis.Rmd | 57 112 files changed, 2390 insertions(+), 2298 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david.schoch@manchester.ac.uk>
Diff between graphlayouts versions 0.7.1 dated 2020-10-26 and 0.7.2 dated 2021-11-21
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/layout_large_graphs.R | 7 ++++--- R/layout_stress.R | 26 +++++++++----------------- README.md | 28 +++++++++++----------------- man/figures/README-flex_cent-1.png |binary man/layout_pmds.Rd | 6 ++++-- man/layout_stress.Rd | 2 +- man/layout_stress3D.Rd | 2 +- src/RcppExports.cpp | 5 +++++ 11 files changed, 54 insertions(+), 55 deletions(-)
Title: Tools for Analysing and Visualising Workplace Analytics Data
Description: Opinionated functions that enable easier and faster
analysis of Workplace Analytics data. There are three main types of functions in 'wpa':
(i) Standard functions create a 'ggplot' visual or a summary table based on a specific
Workplace Analytics metric; (2) Report Generation functions generate HTML reports on
a specific analysis area, e.g. Collaboration; (3) Other miscellaneous functions cover
more specific applications (e.g. Subject Line text mining) of Workplace Analytics data.
This package adheres to 'tidyverse' principles and works well with the pipe syntax.
'wpa' is built with the beginner-to-intermediate R users in mind, and is optimised for
simplicity.
Author: Martin Chan [aut, cre],
Carlos Morales [aut],
Mark Powers [ctb],
Ainize Cidoncha [ctb],
Rosamary Ochoa Vargas [ctb],
Tannaz Sattari [ctb],
Lucas Hogner [ctb],
Jasminder Thind [ctb],
Simone Liebal [ctb],
Aleksey Ashikhmin [ctb],
Ellen Trinklein [ctb],
Microsoft Corporation [cph]
Maintainer: Martin Chan <martin.chan@microsoft.com>
Diff between wpa versions 1.6.2 dated 2021-10-15 and 1.6.3 dated 2021-11-21
DESCRIPTION | 6 - MD5 | 158 +++++++++++++++++++++--------------------- NAMESPACE | 2 NEWS.md | 7 + R/create_bar.R | 11 ++ R/create_inc.R |only R/create_stacked.R | 14 ++- R/workpatterns_area.R | 2 R/workpatterns_classify_pav.R | 2 R/workpatterns_hclust.R | 2 man/afterhours_dist.Rd | 1 man/afterhours_fizz.Rd | 1 man/afterhours_line.Rd | 1 man/afterhours_rank.Rd | 1 man/afterhours_summary.Rd | 1 man/afterhours_trend.Rd | 1 man/collaboration_area.Rd | 1 man/collaboration_dist.Rd | 1 man/collaboration_fizz.Rd | 1 man/collaboration_line.Rd | 1 man/collaboration_rank.Rd | 1 man/collaboration_sum.Rd | 1 man/collaboration_trend.Rd | 1 man/create_bar.Rd | 6 + man/create_bar_asis.Rd | 2 man/create_boxplot.Rd | 2 man/create_bubble.Rd | 2 man/create_dist.Rd | 2 man/create_fizz.Rd | 2 man/create_hist.Rd | 1 man/create_inc.Rd |only man/create_line.Rd | 2 man/create_line_asis.Rd | 2 man/create_period_scatter.Rd | 2 man/create_rank.Rd | 2 man/create_sankey.Rd | 2 man/create_scatter.Rd | 2 man/create_stacked.Rd | 10 ++ man/create_tracking.Rd | 2 man/create_trend.Rd | 2 man/email_dist.Rd | 1 man/email_fizz.Rd | 1 man/email_line.Rd | 1 man/email_rank.Rd | 1 man/email_summary.Rd | 1 man/email_trend.Rd | 1 man/external_network_plot.Rd | 1 man/hr_trend.Rd | 1 man/hrvar_count.Rd | 1 man/hrvar_trend.Rd | 1 man/internal_network_plot.Rd | 1 man/keymetrics_scan.Rd | 1 man/meeting_dist.Rd | 1 man/meeting_fizz.Rd | 1 man/meeting_line.Rd | 1 man/meeting_quality.Rd | 1 man/meeting_rank.Rd | 1 man/meeting_summary.Rd | 1 man/meeting_trend.Rd | 1 man/meetingtype_dist.Rd | 1 man/meetingtype_dist_ca.Rd | 1 man/meetingtype_dist_mt.Rd | 1 man/meetingtype_summary.Rd | 1 man/mgrcoatt_dist.Rd | 1 man/mgrrel_matrix.Rd | 1 man/one2one_dist.Rd | 1 man/one2one_fizz.Rd | 1 man/one2one_freq.Rd | 1 man/one2one_line.Rd | 1 man/one2one_rank.Rd | 1 man/one2one_sum.Rd | 1 man/one2one_trend.Rd | 1 man/period_change.Rd | 2 man/workloads_dist.Rd | 1 man/workloads_fizz.Rd | 1 man/workloads_line.Rd | 1 man/workloads_rank.Rd | 1 man/workloads_summary.Rd | 1 man/workloads_trend.Rd | 1 man/workpatterns_area.Rd | 1 man/workpatterns_rank.Rd | 1 81 files changed, 212 insertions(+), 90 deletions(-)
Title: Enhancing the 'parallel' Package
Description: Utility functions that enhance the 'parallel' package and support the built-in parallel backends of the 'future' package. For example, availableCores() gives the number of CPU cores available to your R process as given by the operating system, 'cgroups' and Linux containers, R options, and environment variables, including those set by job schedulers on high-performance compute clusters. If none is set, it will fall back to parallel::detectCores(). Another example is makeClusterPSOCK(), which is backward compatible with parallel::makePSOCKcluster() while doing a better job in setting up remote cluster workers without the need for configuring the firewall to do port-forwarding to your local computer.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between parallelly versions 1.28.1 dated 2021-09-09 and 1.29.0 dated 2021-11-21
DESCRIPTION | 6 - MD5 | 32 +++---- NEWS | 44 +++++++++- R/as.cluster.R | 2 R/availableWorkers.R | 25 ++--- R/isForkedChild.R | 24 ++++- R/makeClusterMPI.R | 6 - R/makeClusterPSOCK.R | 193 +++++++++++++++++++++++++++------------------- R/options.R | 13 ++- R/ports.R | 14 +-- R/utils.R | 19 +++- README.md | 3 inst/WORDLIST | 2 man/isForkedChild.Rd | 9 +- man/makeClusterPSOCK.Rd | 58 +++++++++++-- man/parallelly.options.Rd | 4 tests/makeClusterPSOCK.R | 20 ++++ 17 files changed, 326 insertions(+), 148 deletions(-)
Title: A Future API for Parallel Processing using 'callr'
Description: Implementation of the Future API on top of the 'callr' package. This allows you to process futures, as defined by the 'future' package, in parallel out of the box, on your local (Linux, macOS, Windows, ...) machine. Contrary to backends relying on the 'parallel' package (e.g. 'future::multisession') and socket connections, the 'callr' backend provided here can run more than 125 parallel R processes.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future.callr versions 0.6.1 dated 2021-05-04 and 0.7.0 dated 2021-11-21
DESCRIPTION | 12 +++--- MD5 | 20 +++++----- NAMESPACE | 1 NEWS | 11 +++++ R/001.bquote.R | 88 +-------------------------------------------- R/CallrFuture-class.R | 43 +++++++++++++++++---- R/CallrFutureError-class.R |only R/callr.R | 1 build/vignette.rds |binary inst/CITATION | 51 ++++++++++++-------------- man/CallrFuture.Rd | 3 + man/CallrFutureError.Rd |only 12 files changed, 94 insertions(+), 136 deletions(-)
Title: Statistics About Bytes Contained in a File as a Circle Plot
Description: Shows statistics about bytes contained in a file
as a circle graph of deviations from mean in sigma increments.
The function can be useful for statistically analyze the content of files
in a glimpse: text files are shown as a green centered crown, compressed
and encrypted files should be shown as equally distributed variations with
a very low CV (sigma/mean), and other types of files can be classified between
these two categories depending on their text vs binary content, which can be
useful to quickly determine how information is stored inside them (databases,
multimedia files, etc).
Author: Roberto S. Galende [aut, cre]
Maintainer: Roberto S. Galende <roberto.s.galende@gmail.com>
Diff between bytescircle versions 1.1 dated 2017-01-19 and 1.1.1 dated 2021-11-21
DESCRIPTION | 9 - MD5 | 22 +-- NAMESPACE | 2 R/bytescircle.R | 286 +++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/bytescircle.R | 18 +- inst/doc/bytescircle.Rmd | 2 inst/doc/bytescircle.pdf |binary man/bytescircle.Rd | 108 ++++++++-------- src/bytescircle_read_file_.c | 1 src/bytescircle_read_file_.h |only src/registerDynamicSymbol.c |only vignettes/bytescircle.Rmd | 2 13 files changed, 229 insertions(+), 221 deletions(-)