Title: A Multi-Process 'dplyr' Backend
Description: Partition a data frame across multiple worker
processes to provide simple multicore parallelism.
Author: Hadley Wickham [aut, cre],
RStudio [cph]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between multidplyr versions 0.1.0 dated 2021-02-08 and 0.1.1 dated 2021-12-01
multidplyr-0.1.0/multidplyr/vignettes/multidplyr.md |only multidplyr-0.1.1/multidplyr/DESCRIPTION | 17 multidplyr-0.1.1/multidplyr/MD5 | 26 - multidplyr-0.1.1/multidplyr/NAMESPACE | 1 multidplyr-0.1.1/multidplyr/NEWS.md |only multidplyr-0.1.1/multidplyr/R/cluster.R | 3 multidplyr-0.1.1/multidplyr/R/dplyr-dual.R | 8 multidplyr-0.1.1/multidplyr/R/partydf.R | 5 multidplyr-0.1.1/multidplyr/README.md | 17 multidplyr-0.1.1/multidplyr/build/vignette.rds |binary multidplyr-0.1.1/multidplyr/inst/doc/multidplyr.html | 211 ++++++++++- multidplyr-0.1.1/multidplyr/man/multidplyr-package.Rd | 4 multidplyr-0.1.1/multidplyr/man/partition.Rd | 2 multidplyr-0.1.1/multidplyr/tests/testthat/_snaps/cluster.md | 1 multidplyr-0.1.1/multidplyr/tests/testthat/test-partydf.R | 2 15 files changed, 250 insertions(+), 47 deletions(-)
Title: Measurement Error Correction in Linear Models with a Continuous
Outcome
Description: Covariate measurement error correction is implemented by means of regression calibration by Carroll RJ, Ruppert D, Stefanski LA & Crainiceanu CM (2006, ISBN:1584886331), efficient regression calibration by Spiegelman D, Carroll RJ & Kipnis V (2001) <doi:10.1002/1097-0258(20010115)20:1%3C139::AID-SIM644%3E3.0.CO;2-K> and maximum likelihood estimation by Bartlett JW, Stavola DBL & Frost C (2009) <doi:10.1002/sim.3713>. Outcome measurement error correction is implemented by means of the method of moments by Buonaccorsi JP (2010, ISBN:1420066560) and efficient method of moments by Keogh RH, Carroll RJ, Tooze JA, Kirkpatrick SI & Freedman LS (2014) <doi:10.1002/sim.7011>. Standard error estimation of the corrected estimators is implemented by means of the Delta method by Rosner B, Spiegelman D & Willett WC (1990) <doi:10.1093/oxfordjournals.aje.a115715> and Rosner B, Spiegelman D & Willett WC (1992) <doi:10.1093/oxfordjournals.aje.a116453>, the Fieller method described by Buonaccorsi JP (2010, ISBN:1420066560), and the Bootstrap by Carroll RJ, Ruppert D, Stefanski LA & Crainiceanu CM (2006, ISBN:1584886331).
Author: Linda Nab
Maintainer: Linda Nab <lindanab4@gmail.com>
Diff between mecor versions 0.9.0 dated 2021-01-14 and 1.0.0 dated 2021-12-01
mecor-0.9.0/mecor/data/ccs.rda |only mecor-0.9.0/mecor/data/ecvs.rda |only mecor-0.9.0/mecor/data/eovs.rda |only mecor-0.9.0/mecor/data/icvs.rda |only mecor-0.9.0/mecor/data/iovs.rda |only mecor-0.9.0/mecor/data/iovs_diff.rda |only mecor-0.9.0/mecor/data/rs.rda |only mecor-0.9.0/mecor/man/ccs.Rd |only mecor-0.9.0/mecor/man/ecvs.Rd |only mecor-0.9.0/mecor/man/eovs.Rd |only mecor-0.9.0/mecor/man/icvs.Rd |only mecor-0.9.0/mecor/man/iovs.Rd |only mecor-0.9.0/mecor/man/iovs_diff.Rd |only mecor-0.9.0/mecor/man/rs.Rd |only mecor-1.0.0/mecor/DESCRIPTION | 8 mecor-1.0.0/mecor/MD5 | 80 +- mecor-1.0.0/mecor/R/MeasError.R | 34 - mecor-1.0.0/mecor/R/MeasErrorExt.R | 47 - mecor-1.0.0/mecor/R/MeasErrorRandom.R | 4 mecor-1.0.0/mecor/R/S3-mecor.R | 6 mecor-1.0.0/mecor/R/analysis-bootstrap.R | 23 mecor-1.0.0/mecor/R/analysis-design_matrices.R | 7 mecor-1.0.0/mecor/R/analysis-efficient.R | 14 mecor-1.0.0/mecor/R/analysis-standard.R | 50 + mecor-1.0.0/mecor/R/data.R | 192 +++-- mecor-1.0.0/mecor/R/mecor.R | 100 +-- mecor-1.0.0/mecor/README.md | 9 mecor-1.0.0/mecor/build/vignette.rds |binary mecor-1.0.0/mecor/data/bloodpressure.rda |only mecor-1.0.0/mecor/data/haemoglobin.rda |only mecor-1.0.0/mecor/data/haemoglobin_ext.rda |only mecor-1.0.0/mecor/data/sodium.rda |only mecor-1.0.0/mecor/data/vat.rda |only mecor-1.0.0/mecor/data/vat_ext.rda |only mecor-1.0.0/mecor/inst/doc/mecor_mece.html | 384 +++-------- mecor-1.0.0/mecor/inst/doc/random_covme.R | 27 mecor-1.0.0/mecor/inst/doc/random_covme.Rmd | 38 - mecor-1.0.0/mecor/inst/doc/random_covme.html | 467 ++++---------- mecor-1.0.0/mecor/inst/doc/standard_covme.R | 74 +- mecor-1.0.0/mecor/inst/doc/standard_covme.Rmd | 95 +- mecor-1.0.0/mecor/inst/doc/standard_covme.html | 808 +++++++++---------------- mecor-1.0.0/mecor/man/MeasError.Rd | 34 - mecor-1.0.0/mecor/man/MeasErrorExt.Rd | 47 - mecor-1.0.0/mecor/man/MeasErrorRandom.Rd | 4 mecor-1.0.0/mecor/man/bloodpressure.Rd |only mecor-1.0.0/mecor/man/haemoglobin.Rd |only mecor-1.0.0/mecor/man/haemoglobin_ext.Rd |only mecor-1.0.0/mecor/man/mecor.Rd | 83 -- mecor-1.0.0/mecor/man/sodium.Rd |only mecor-1.0.0/mecor/man/summary.mecor.Rd | 6 mecor-1.0.0/mecor/man/vat.Rd |only mecor-1.0.0/mecor/man/vat_ext.Rd |only mecor-1.0.0/mecor/vignettes/random_covme.Rmd | 38 - mecor-1.0.0/mecor/vignettes/standard_covme.Rmd | 95 +- 54 files changed, 1102 insertions(+), 1672 deletions(-)
Title: Repeated Measures Correlation
Description: Compute the repeated measures correlation, a statistical technique
for determining the overall within-individual relationship among paired measures
assessed on two or more occasions, first introduced by Bland and Altman (1995).
Includes functions for diagnostics, p-value, effect size with confidence
interval including optional bootstrapping, as well as graphing. Also includes
several example datasets. For more details, see Bakdash and Marusich (2017) <doi:10.3389/fpsyg.2017.00456>.
Author: Jonathan Z. Bakdash, Laura R. Marusich
Maintainer: Laura R. Marusich <lmarusich@gmail.com>
Diff between rmcorr versions 0.4.4 dated 2021-08-10 and 0.4.5 dated 2021-12-01
DESCRIPTION | 11 ++++++----- MD5 | 14 ++++++++------ NEWS.md | 9 +++++++++ R/rmcorr.R | 6 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/New_rmcorr_paper_analyses_figures.html | 8 ++++---- tests |only 8 files changed, 30 insertions(+), 18 deletions(-)
Title: Example Data Sets for Causal Inference Textbooks
Description: Example data sets to run the example
problems from causal inference textbooks. Currently, contains data
sets for Huntington-Klein, Nick (2021) "The Effect" <https://theeffectbook.net>,
Cunningham, Scott (2021, ISBN-13: 978-0-300-25168-5) "Causal Inference: The Mixtape",
and Hernán, Miguel and James Robins (2020) "Causal Inference: What If"
<https://www.hsph.harvard.edu/miguel-hernan/causal-inference-book/>.
Author: Nick Huntington-Klein [aut, cre]
(<https://orcid.org/0000-0002-7352-3991>),
Malcolm Barrett [aut] (<https://orcid.org/0000-0003-0299-5825>)
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>
Diff between causaldata versions 0.1.1 dated 2021-05-20 and 0.1.3 dated 2021-12-01
DESCRIPTION | 10 ++++++---- MD5 | 39 ++++++++++++++++++++------------------- NEWS.md |only R/data.R | 6 ++++-- data/abortion.rda |binary data/adult_services.rda |binary data/castle.rda |binary data/close_college.rda |binary data/close_elections_lmb.rda |binary data/cps_mixtape.rda |binary data/nsw_mixtape.rda |binary data/ri.rda |binary data/texas.rda |binary data/thornton_hiv.rda |binary data/titanic.rda |binary data/training_bias_reduction.rda |binary data/training_example.rda |binary data/yule.rda |binary man/abortion.Rd | 3 ++- man/castle.Rd | 3 ++- man/causaldata-package.Rd | 15 +++++++++------ 21 files changed, 43 insertions(+), 33 deletions(-)
Title: Search and Extract Data from the OECD
Description: Search and extract data from the Organization for Economic
Cooperation and Development (OECD).
Author: Eric Persson [aut, cre]
Maintainer: Eric Persson <expersso5@gmail.com>
Diff between OECD versions 0.2.4 dated 2019-10-15 and 0.2.5 dated 2021-12-01
OECD-0.2.4/OECD/build |only OECD-0.2.4/OECD/inst |only OECD-0.2.4/OECD/vignettes |only OECD-0.2.5/OECD/DESCRIPTION | 17 ++++++++--------- OECD-0.2.5/OECD/MD5 | 12 +++--------- OECD-0.2.5/OECD/R/main.R | 5 +++-- OECD-0.2.5/OECD/man/get_dataset.Rd | 10 ++++++++-- 7 files changed, 22 insertions(+), 22 deletions(-)
Title: Confusion Matrix Toolset
Description: Takes the outputs of a 'caret' confusion matrix and allows for the quick conversion of these list items to lists.
The intended usage is to allow the tool to work with the outputs of machine learning classification models.
This tool works with classification problems for binary and multi-classification problems and allows for the record level conversion of the confusion matrix outputs.
This is useful, as it allows quick conversion of these objects for storage in database systems and to track ML model performance over time.
Traditionally, this approach has been used for highlighting model representation and feature slippage.
Author: Gary Hutson [aut, cre] (<https://orcid.org/0000-0003-3534-6143>)
Maintainer: Gary Hutson <hutsons-hacks@outlook.com>
Diff between ConfusionTableR versions 1.0.3 dated 2021-11-01 and 1.0.4 dated 2021-12-01
DESCRIPTION | 11 - MD5 | 24 +-- NEWS.md | 3 R/MultiFramer.R | 7 R/SingleFramer.R | 14 + R/binaryVisualiseR.R | 25 +-- inst/doc/ConfusionTableR.R | 3 inst/doc/ConfusionTableR.Rmd | 3 inst/doc/ConfusionTableR.html | 311 +++++++++++++++++++----------------------- man/binary_class_cm.Rd | 6 man/binary_visualiseR.Rd | 8 - man/multi_class_cm.Rd | 6 vignettes/ConfusionTableR.Rmd | 3 13 files changed, 207 insertions(+), 217 deletions(-)
More information about ConfusionTableR at CRAN
Permanent link
Title: Poisson-Tweedie Generalized Linear Mixed Model
Description: Fits the Poisson-Tweedie generalized linear mixed
model described in Signorelli et al. (2021,
<doi:10.1177/1471082X20936017>). Likelihood approximation based on
adaptive Gauss Hermite quadrature rule.
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Pietro Spitali [ctb],
Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between ptmixed versions 1.1.0 dated 2021-11-05 and 1.1.1 dated 2021-12-01
ptmixed-1.1.0/ptmixed/inst/NEWS.Rmd |only ptmixed-1.1.1/ptmixed/DESCRIPTION | 6 +++--- ptmixed-1.1.1/ptmixed/MD5 | 4 ++-- ptmixed-1.1.1/ptmixed/inst/NEWS.md |only 4 files changed, 5 insertions(+), 5 deletions(-)
Title: Penalized Regression Calibration (PRC)
Description: Computes penalized regression calibration (PRC), a
statistical method that allows to predict survival from
high-dimensional longitudinal predictors. PRC is described in
Signorelli et al. (2021, <doi:10.1002/sim.9178>)).
Author: Mirko Signorelli [aut, cre, cph]
(<https://orcid.org/0000-0002-8102-3356>),
Pietro Spitali [ctb],
Roula Tsonaka [ctb]
Maintainer: Mirko Signorelli <msignorelli.rpackages@gmail.com>
Diff between pencal versions 1.0.0 dated 2021-09-03 and 1.0.1 dated 2021-12-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/NEWS.md | 7 +++++++ 3 files changed, 13 insertions(+), 6 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in parallel,
so metadata resolution and package downloads are fast. Metadata and package
files are cached on the local disk as well. 'pak' has a dependency solver,
so it finds version conflicts before performing the installation. This
version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.
Author: Gábor Csárdi [aut, cre],
Jim Hester [aut],
RStudio [cph]
Maintainer: Gábor Csárdi <csardi.gabor@gmail.com>
Diff between pak versions 0.1.2.1 dated 2020-11-19 and 0.2.0 dated 2021-12-01
pak-0.1.2.1/pak/R/aaa-pkgdepends.R |only pak-0.1.2.1/pak/R/aaa-pkginstall.R |only pak-0.1.2.1/pak/R/proj.R |only pak-0.1.2.1/pak/man/pak_private_library.Rd |only pak-0.1.2.1/pak/man/proj_create.Rd |only pak-0.1.2.1/pak/man/proj_install.Rd |only pak-0.1.2.1/pak/man/proj_install_dev.Rd |only pak-0.1.2.1/pak/man/proj_remove.Rd |only pak-0.1.2.1/pak/man/proj_status.Rd |only pak-0.1.2.1/pak/tests/pkgdepends |only pak-0.1.2.1/pak/tests/pkginstall |only pak-0.1.2.1/pak/tests/test-pkgdepends.R |only pak-0.1.2.1/pak/tests/test-pkginstall.R |only pak-0.1.2.1/pak/tools |only pak-0.2.0/pak/DESCRIPTION | 31 + pak-0.2.0/pak/MD5 | 188 ++++------- pak-0.2.0/pak/NAMESPACE | 43 ++ pak-0.2.0/pak/NEWS.md | 4 pak-0.2.0/pak/R/cache.R |only pak-0.2.0/pak/R/confirmation.R | 109 ++++-- pak-0.2.0/pak/R/deps-explain.R |only pak-0.2.0/pak/R/dev-mode.R |only pak-0.2.0/pak/R/errors.R |only pak-0.2.0/pak/R/extra.R |only pak-0.2.0/pak/R/formatted.R |only pak-0.2.0/pak/R/global-handler.R |only pak-0.2.0/pak/R/library.R | 3 pak-0.2.0/pak/R/local.R | 170 ++++++++-- pak-0.2.0/pak/R/lockfile.R |only pak-0.2.0/pak/R/name-check.R |only pak-0.2.0/pak/R/onload.R | 112 ++++++ pak-0.2.0/pak/R/package.R | 261 ++++++++++++---- pak-0.2.0/pak/R/pak-cleanup.R | 84 ----- pak-0.2.0/pak/R/pak-install.R | 138 ++++---- pak-0.2.0/pak/R/pak-update.R |only pak-0.2.0/pak/R/pak.R |only pak-0.2.0/pak/R/print.R | 62 ++- pak-0.2.0/pak/R/private-lib.R | 252 +-------------- pak-0.2.0/pak/R/repo.R |only pak-0.2.0/pak/R/rstudio-detect.R |only pak-0.2.0/pak/R/search.R |only pak-0.2.0/pak/R/subprocess.R | 150 ++++++--- pak-0.2.0/pak/R/system-requirements.R |only pak-0.2.0/pak/R/terminate.R |only pak-0.2.0/pak/R/unload.R |only pak-0.2.0/pak/R/utils.R | 144 ++++++++ pak-0.2.0/pak/R/warn-loaded.R |only pak-0.2.0/pak/README.md | 105 ++++-- pak-0.2.0/pak/data |only pak-0.2.0/pak/man/cache.Rd |only pak-0.2.0/pak/man/handle_package_not_found.Rd |only pak-0.2.0/pak/man/lib_status.Rd | 17 - pak-0.2.0/pak/man/local_deps.Rd |only pak-0.2.0/pak/man/local_deps_explain.Rd |only pak-0.2.0/pak/man/local_install.Rd | 41 +- pak-0.2.0/pak/man/local_install_deps.Rd | 41 +- pak-0.2.0/pak/man/local_install_dev_deps.Rd | 41 +- pak-0.2.0/pak/man/local_package_trees.Rd | 10 pak-0.2.0/pak/man/local_system_requirements.Rd |only pak-0.2.0/pak/man/lockfile_create.Rd |only pak-0.2.0/pak/man/lockfile_install.Rd |only pak-0.2.0/pak/man/metadata.Rd |only pak-0.2.0/pak/man/pak.Rd |only pak-0.2.0/pak/man/pak_cleanup.Rd | 18 - pak-0.2.0/pak/man/pak_install_extra.Rd |only pak-0.2.0/pak/man/pak_package_sources.Rd | 51 +-- pak-0.2.0/pak/man/pak_setup.Rd | 13 pak-0.2.0/pak/man/pak_sitrep.Rd | 6 pak-0.2.0/pak/man/pak_update.Rd |only pak-0.2.0/pak/man/pkg_deps.Rd |only pak-0.2.0/pak/man/pkg_deps_explain.Rd |only pak-0.2.0/pak/man/pkg_deps_tree.Rd |only pak-0.2.0/pak/man/pkg_download.Rd |only pak-0.2.0/pak/man/pkg_history.Rd |only pak-0.2.0/pak/man/pkg_install.Rd | 60 ++- pak-0.2.0/pak/man/pkg_name_check.Rd |only pak-0.2.0/pak/man/pkg_remove.Rd | 11 pak-0.2.0/pak/man/pkg_search.Rd |only pak-0.2.0/pak/man/pkg_status.Rd | 19 - pak-0.2.0/pak/man/repo_add.Rd |only pak-0.2.0/pak/man/repo_get.Rd |only pak-0.2.0/pak/man/repo_status.Rd |only pak-0.2.0/pak/tests/testthat.R | 15 pak-0.2.0/pak/tests/testthat/_snaps |only pak-0.2.0/pak/tests/testthat/setup.R |only pak-0.2.0/pak/tests/testthat/test-platform.R |only pak-0.2.0/pak/tests/testthat/test-print.R |only pak-0.2.0/pak/tests/testthat/test-private-lib.R | 10 pak-0.2.0/pak/tests/testthat/test-subprocess.R |only pak-0.2.0/pak/tests/testthat/test-system-requirements.R |only pak-0.2.0/pak/tests/testthat/test-ui.R |only pak-0.2.0/pak/tests/testthat/test-utils.R | 2 92 files changed, 1379 insertions(+), 832 deletions(-)
Title: Post Processing of (Half-)Hourly Eddy-Covariance Measurements
Description: Standard and extensible Eddy-Covariance data post-processing
(Wutzler et al. (2018) <doi:10.5194/bg-15-5015-2018>)
includes
uStar-filtering, gap-filling, and flux-partitioning.
The Eddy-Covariance (EC) micrometeorological technique quantifies continuous
exchange fluxes of gases, energy, and momentum between an ecosystem and the atmosphere.
It is important for understanding ecosystem dynamics and upscaling exchange fluxes.
(Aubinet et al. (2012) <doi:10.1007/978-94-007-2351-1>).
This package inputs pre-processed (half-)hourly data and supports further processing.
First, a quality-check and filtering is performed based on the relationship between
measured flux and friction
velocity (uStar) to discard biased data
(Papale et al. (2006) <doi:10.5194/bg-3-571-2006>).
Second, gaps in the data are filled based on information from environmental conditions
(Reichstein et al. (2005) <doi:10.1111/j.1365-2486.2005.001002.x>).
Third, the net flux of carbon dioxide is partitioned
into its gross fluxes in and out of the ecosystem by night-time
based and day-time based approaches
(Lasslop et al. (2010) <doi:10.1111/j.1365-2486.2009.02041.x>).
Author: Department for Biogeochemical Integration at MPI-BGC, Jena, Germany
[cph],
Thomas Wutzler [aut, cre],
Markus Reichstein [aut],
Antje Maria Moffat [aut, trl],
Olaf Menzer [ctb],
Mirco Migliavacca [aut],
Kerstin Sickel [ctb, trl],
Ladislav <U+0160>igut [ctb]
Maintainer: Thomas Wutzler <twutz@bgc-jena.mpg.de>
Diff between REddyProc versions 1.3.0 dated 2021-10-14 and 1.3.1 dated 2021-12-01
REddyProc-1.3.0/REddyProc/vignettes/plots |only REddyProc-1.3.1/REddyProc/DESCRIPTION | 8 REddyProc-1.3.1/REddyProc/MD5 | 31 REddyProc-1.3.1/REddyProc/NEWS.md | 5 REddyProc-1.3.1/REddyProc/R/EddyPartitioning.R | 8 REddyProc-1.3.1/REddyProc/build/vignette.rds |binary REddyProc-1.3.1/REddyProc/inst/WORDLIST | 2 REddyProc-1.3.1/REddyProc/inst/doc/DEGebExample.html | 4 REddyProc-1.3.1/REddyProc/inst/doc/aggUncertainty.html | 10 REddyProc-1.3.1/REddyProc/inst/doc/uStarCases.html | 42 REddyProc-1.3.1/REddyProc/inst/doc/useCase.html | 36 REddyProc-1.3.1/REddyProc/inst/genData/REddyProc-package.Rd | 214 ++-- REddyProc-1.3.1/REddyProc/man/REddyProc-package.Rd | 214 ++-- REddyProc-1.3.1/REddyProc/man/sEddyProc_sGLFluxPartitionUStarScens.Rd | 5 REddyProc-1.3.1/REddyProc/tests/testthat/test_partGL.R | 22 REddyProc-1.3.1/REddyProc/tests/testthat/test_sEddyProc.R | 526 +++++----- REddyProc-1.3.1/REddyProc/tests/testthat/test_sEddyProc_Partitioning.R | 286 ++--- 17 files changed, 722 insertions(+), 691 deletions(-)
Title: Likelihood Analyses for Common Statistical Tests
Description: A collection of functions that calculate the log likelihood
(support) for a range of statistical tests. Where possible the likelihood
function and likelihood interval for the observed data are displayed. The
evidential approach used here is based on the book "Likelihood" by A.W.F.
Edwards (1992, ISBN-13 : 978-0801844430), "Statistical Evidence" by R.
Royall (1997, ISBN-13 : 978-0412044113), S.N. Goodman & R. Royall
(2011) <doi:10.2105/AJPH.78.12.1568>, "Understanding
Psychology as a Science" by Z. Dienes (2008, ISBN-13 : 978-0230542310),
S. Glover & P. Dixon <https://link.springer.com/article/10.3758/BF03196706>
and others. This package accompanies "Evidence-Based Statistics" by
P. Cahusac (2020, ISBN-13 : 978-1119549802).
Author: Peter Cahusac [aut, cre] (<https://orcid.org/0000-0003-4976-2834>)
Maintainer: Peter Cahusac <peteqsac@gmail.com>
Diff between likelihoodR versions 1.0.6 dated 2021-10-29 and 1.0.7 dated 2021-12-01
DESCRIPTION | 9 ++++----- MD5 | 4 ++-- R/L_2S_ttest.R | 9 +++++---- 3 files changed, 11 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-09 0.6
2018-09-17 0.5
Title: Phase I Control Charts (with Emphasis on Distribution-Free
Methods)
Description: Statistical methods for retrospectively detecting changes
in location and/or dispersion of univariate and multivariate
variables. Data values are assumed to be independent, can be
individual (one observation at each instant of time) or subgrouped
(more than one observation at each instant of time).
Control limits are computed, often using a permutation approach,
so that a prescribed false alarm probability is guaranteed
without making any parametric assumptions on the stable
(in-control) distribution. See G. Capizzi and G. Masarotto (2018)
<doi:10.1007/978-3-319-75295-2_1> for an introduction to the package.
Author: Giovanna Capizzi and Guido Masarotto
Maintainer: Giovanna Capizzi <giovanna.capizzi@unipd.it>
Diff between dfphase1 versions 1.1.3 dated 2021-02-17 and 1.1.4 dated 2021-12-01
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NEWS.md | 7 +++++++ build/partial.rdb |binary inst |only man/dfphase1-package.Rd | 2 +- man/mphase1.Rd | 2 +- src/lars.cpp | 13 +++++++++---- src/mphase1.cpp | 2 ++ src/multi.cpp | 12 +++++++++--- src/rsp.cpp | 4 +++- src/shewhart.cpp | 1 + 12 files changed, 48 insertions(+), 24 deletions(-)
Title: Model Classifier for Binary Classification
Description: A collection of tools that support data splitting, predictive modeling, and model evaluation.
A typical function is to split a dataset into a training dataset and a test dataset.
Then compare the data distribution of the two datasets.
Another feature is to support the development of predictive models and to compare the performance of several predictive models,
helping to select the best model.
Author: Choonghyun Ryu [aut, cre]
Maintainer: Choonghyun Ryu <choonghyun.ryu@gmail.com>
Diff between alookr versions 0.3.4 dated 2021-02-22 and 0.3.5 dated 2021-12-01
DESCRIPTION | 11 MD5 | 52 +- NAMESPACE | 1 NEWS | 15 R/evaluate.R | 15 R/modeling.R | 38 +- build/vignette.rds |binary inst/doc/cleansing.R | 100 ----- inst/doc/cleansing.Rmd | 160 --------- inst/doc/cleansing.html | 375 --------------------- inst/doc/introduce.R |only inst/doc/introduce.Rmd |only inst/doc/introduce.html |only inst/doc/modeling.R | 236 ------------- inst/doc/modeling.Rmd | 483 --------------------------- inst/doc/modeling.html | 799 ---------------------------------------------- inst/doc/split.R | 146 -------- inst/doc/split.Rmd | 246 -------------- inst/doc/split.html | 548 ------------------------------- man/performance_metric.Rd | 3 man/plot_cutoff.Rd | 2 man/plot_performance.Rd | 2 man/run_models.Rd | 6 man/run_performance.Rd | 2 man/run_predict.Rd | 2 vignettes/cleansing.Rmd | 160 --------- vignettes/introduce.Rmd |only vignettes/modeling.Rmd | 483 --------------------------- vignettes/split.Rmd | 246 -------------- 29 files changed, 142 insertions(+), 3989 deletions(-)
Title: Alt String Implementation
Description: Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.
Author: Travers Ching [aut, cre, cph],
Phillip Hazel [ctb] (Bundled PCRE2 code),
Zoltan Herczeg [ctb, cph] (Bundled PCRE2 code),
University of Cambridge [cph] (Bundled PCRE2 code),
Tilera Corporation [cph] (Stack-less Just-In-Time compiler bundled with
PCRE2),
Yann Collet [ctb, cph] (Yann Collet is the author of the bundled xxHash
code)
Maintainer: Travers Ching <traversc@gmail.com>
Diff between stringfish versions 0.15.4 dated 2021-10-15 and 0.15.5 dated 2021-12-01
ChangeLog | 5 DESCRIPTION | 10 MD5 | 20 - README.md | 16 - build/vignette.rds |binary inst/doc/vignette.html | 13 inst/doc/vignette.rmd | 12 src/sf_disabled.h | 2 src/sf_functions.cpp | 24 - tests/tests.r | 704 ++++++++++++++++++++++++------------------------- vignettes/vignette.rmd | 12 11 files changed, 418 insertions(+), 400 deletions(-)
Title: Relative Survival
Description: Contains functions for analysing relative survival data, including nonparametric estimators of net (marginal relative) survival, relative survival ratio, crude mortality, methods for fitting and checking additive and multiplicative regression models, transformation approach, methods for dealing with population mortality tables. Work has been described in Pohar Perme, Pavlic (2018) <doi:10.18637/jss.v087.i08>.
Author: Maja Pohar Perme [aut],
Damjan Manevski [aut, cre]
Maintainer: Damjan Manevski <damjan.manevski@mf.uni-lj.si>
Diff between relsurv versions 2.2-5 dated 2021-07-05 and 2.2-6 dated 2021-12-01
relsurv-2.2-5/relsurv/man/cmprel.Rd |only relsurv-2.2-5/relsurv/man/plotcmprel.Rd |only relsurv-2.2-5/relsurv/man/plotrszph.Rd |only relsurv-2.2-5/relsurv/man/resid.Rd |only relsurv-2.2-5/relsurv/man/rsbr.Rd |only relsurv-2.2-5/relsurv/man/rsdiff.Rd |only relsurv-2.2-5/relsurv/man/rssurv.Rd |only relsurv-2.2-5/relsurv/man/rssurvrsadd.Rd |only relsurv-2.2-5/relsurv/man/rszph.Rd |only relsurv-2.2-5/relsurv/man/survfitrsadd.rd |only relsurv-2.2-5/relsurv/man/transratehld.Rd |only relsurv-2.2-5/relsurv/man/transratehmd.Rd |only relsurv-2.2-6/relsurv/DESCRIPTION | 10 +++---- relsurv-2.2-6/relsurv/MD5 | 34 +++++++++++++++------------ relsurv-2.2-6/relsurv/NAMESPACE | 2 - relsurv-2.2-6/relsurv/R/years.R |only relsurv-2.2-6/relsurv/inst/news.Rd | 5 +++ relsurv-2.2-6/relsurv/man/cmp.rel.Rd |only relsurv-2.2-6/relsurv/man/plot.cmp.rel.Rd |only relsurv-2.2-6/relsurv/man/plot.rs.zph.Rd |only relsurv-2.2-6/relsurv/man/plot_f.Rd |only relsurv-2.2-6/relsurv/man/plot_years.Rd |only relsurv-2.2-6/relsurv/man/residuals.rsadd.Rd |only relsurv-2.2-6/relsurv/man/rs.br.Rd |only relsurv-2.2-6/relsurv/man/rs.diff.Rd |only relsurv-2.2-6/relsurv/man/rs.surv.Rd |only relsurv-2.2-6/relsurv/man/rs.surv.rsadd.Rd |only relsurv-2.2-6/relsurv/man/rs.zph.Rd |only relsurv-2.2-6/relsurv/man/survfit.rsadd.Rd |only relsurv-2.2-6/relsurv/man/transrate.hld.Rd |only relsurv-2.2-6/relsurv/man/transrate.hmd.Rd |only relsurv-2.2-6/relsurv/man/years.Rd |only 32 files changed, 30 insertions(+), 21 deletions(-)
More information about pedalfast.data at CRAN
Permanent link
Title: Producing and Reproducing Results
Description: A system for embedded scientific computing and reproducible research with R.
The OpenCPU server exposes a simple but powerful HTTP api for RPC and data interchange
with R. This provides a reliable and scalable foundation for statistical services or
building R web applications. The OpenCPU server runs either as a single-user development
server within the interactive R session, or as a multi-user Linux stack based on Apache2.
The entire system is fully open source and permissively licensed. The OpenCPU website
has detailed documentation and example apps.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencpu versions 2.2.5 dated 2021-08-17 and 2.2.6 dated 2021-12-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 3 +++ R/parse_post.R | 2 +- build/vignette.rds |binary inst/doc/opencpu-paper.pdf |binary 6 files changed, 12 insertions(+), 9 deletions(-)
Title: Hidden Hybrid Markov/Semi-Markov Model Fitting
Description: Develops algorithms for fitting, prediction, simulation
and initialization of the hidden hybrid Markov/semi-Markov model,
introduced by Guedon (2005) <doi:10.1016/j.csda.2004.05.033>,
which also includes several tools for handling missing data,
fitting regime sweaching regression and auto-regressive
hidden hybrid Markov/semi-Markov model, and many other useful tools.
Author: Morteza Amini [aut, cre, cph],
Afarin Bayat [aut]
Maintainer: Morteza Amini <morteza.amini@ut.ac.ir>
Diff between hhsmm versions 0.2.2 dated 2021-11-23 and 0.2.3 dated 2021-12-01
DESCRIPTION | 15 ++++++++++----- MD5 | 30 +++++++++++++++++------------- NAMESPACE | 2 ++ R/cov-miss-mix-wt.R | 1 - R/dmixlm.R | 4 ++-- R/lagdata.R |only R/make-model.R | 4 +++- R/mstep-mix-lm.R | 8 ++++---- R/rmixar.R |only R/rmixlm.R | 2 +- R/simulate-hhsmm.R | 27 +++++++++++++++++++++++++-- R/train-test-split.R | 2 +- man/dmixlm.Rd | 4 ++-- man/lagdata.Rd |only man/mixlm_mstep.Rd | 4 ++-- man/rmixar.Rd |only man/rmixlm.Rd | 2 +- man/simulate.hhsmmspec.Rd | 26 +++++++++++++++++++++++++- 18 files changed, 95 insertions(+), 36 deletions(-)
Title: Latent and Stochastic Block Model Estimation by a 'V-EM'
Algorithm
Description: Latent and Stochastic Block Model estimation by a Variational EM algorithm.
Various probability distribution are provided (Bernoulli,
Poisson...), with or without covariates.
Author: Jean-Benoist Leger <jbleger@hds.utc.fr>, Pierre Barbillon <pierre.barbillon@agroparistech.fr>, Julien Chiquet <julien.chiquet@inrae.fr>
Maintainer: Jean-Benoist Leger <jbleger@hds.utc.fr>
Diff between blockmodels versions 1.1.4 dated 2020-11-23 and 1.1.5 dated 2021-12-01
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ src/models/gaussian.h | 4 +-- src/models/gaussian_covariates.h | 6 ++--- src/models/gaussian_multivariate.h | 4 +-- src/models/gaussian_multivariate_independent.h | 4 +-- src/models/gaussian_multivariate_independent_homoscedastic.h | 4 +-- 7 files changed, 21 insertions(+), 21 deletions(-)
Title: Pre-Commit Hooks
Description: Useful git hooks for R building on top of the multi-language
framework 'pre-commit' for hook management. This package provides git
hooks for common tasks like formatting files with 'styler' or spell
checking as well as wrapper functions to access the 'pre-commit'
executable.
Author: Lorenz Walthert
Maintainer: Lorenz Walthert <lorenz.walthert@icloud.com>
Diff between precommit versions 0.1.3 dated 2020-10-10 and 0.2.0 dated 2021-12-01
precommit-0.1.3/precommit/tests/testthat/setup-git2r.R |only precommit-0.1.3/precommit/tests/testthat/test-all.R |only precommit-0.1.3/precommit/tests/testthat/test-assumptions.R |only precommit-0.2.0/precommit/DESCRIPTION | 28 precommit-0.2.0/precommit/MD5 | 173 +++-- precommit-0.2.0/precommit/NAMESPACE | 9 precommit-0.2.0/precommit/NEWS.md | 154 ++++ precommit-0.2.0/precommit/R/aaa.R |only precommit-0.2.0/precommit/R/assert.R | 4 precommit-0.2.0/precommit/R/cache.R |only precommit-0.2.0/precommit/R/call.R | 22 precommit-0.2.0/precommit/R/config.R | 30 precommit-0.2.0/precommit/R/exec.R | 80 +- precommit-0.2.0/precommit/R/install.R | 100 ++- precommit-0.2.0/precommit/R/release.R | 56 + precommit-0.2.0/precommit/R/roxygen2.R | 122 +++ precommit-0.2.0/precommit/R/setup.R | 136 ++++ precommit-0.2.0/precommit/R/testing.R | 278 +++++++- precommit-0.2.0/precommit/R/update.R |only precommit-0.2.0/precommit/R/usethis.R |only precommit-0.2.0/precommit/R/utils.R | 35 + precommit-0.2.0/precommit/R/zzz.R | 4 precommit-0.2.0/precommit/README.md | 122 ++- precommit-0.2.0/precommit/build/vignette.rds |binary precommit-0.2.0/precommit/inst/bin/codemeta-description-updated | 1 precommit-0.2.0/precommit/inst/bin/deps-in-desc | 14 precommit-0.2.0/precommit/inst/bin/no-browser-statement | 2 precommit-0.2.0/precommit/inst/bin/roxygenize | 33 - precommit-0.2.0/precommit/inst/bin/style-files | 79 ++ precommit-0.2.0/precommit/inst/bin/use-tidy-description | 2 precommit-0.2.0/precommit/inst/consistent-release-tag |only precommit-0.2.0/precommit/inst/doc/FAQ.Rmd | 52 - precommit-0.2.0/precommit/inst/doc/FAQ.html | 256 +------- precommit-0.2.0/precommit/inst/doc/available-hooks.R | 4 precommit-0.2.0/precommit/inst/doc/available-hooks.Rmd | 165 +++-- precommit-0.2.0/precommit/inst/doc/available-hooks.html | 309 ++-------- precommit-0.2.0/precommit/inst/doc/ci.Rmd |only precommit-0.2.0/precommit/inst/doc/ci.html |only precommit-0.2.0/precommit/inst/doc/hook-order.html | 193 ------ precommit-0.2.0/precommit/inst/doc/testing.R |only precommit-0.2.0/precommit/inst/doc/testing.Rmd |only precommit-0.2.0/precommit/inst/doc/testing.html |only precommit-0.2.0/precommit/inst/doc/why-use-hooks.html | 193 ------ precommit-0.2.0/precommit/inst/hooks |only precommit-0.2.0/precommit/inst/hooks-config-to-inst |only precommit-0.2.0/precommit/inst/pre-commit-config-pkg.yaml | 38 - precommit-0.2.0/precommit/inst/pre-commit-config-proj.yaml | 38 - precommit-0.2.0/precommit/inst/pre-commit-gha.yaml |only precommit-0.2.0/precommit/inst/pre-commit-hooks.yaml | 92 +- precommit-0.2.0/precommit/inst/spell-check-ordered-exclude.R |only precommit-0.2.0/precommit/man/call_and_capture.Rd | 4 precommit-0.2.0/precommit/man/call_precommit.Rd | 4 precommit-0.2.0/precommit/man/copy_artifacts.Rd |only precommit-0.2.0/precommit/man/diff_requires_run_roxygenize.Rd | 14 precommit-0.2.0/precommit/man/dirs_R.cache.Rd |only precommit-0.2.0/precommit/man/ensure_named.Rd |only precommit-0.2.0/precommit/man/extract_diff_root.Rd | 4 precommit-0.2.0/precommit/man/generate_uninstalled_pkg_name.Rd |only precommit-0.2.0/precommit/man/has_persistent_R.cache.Rd |only precommit-0.2.0/precommit/man/hook_state_assert.Rd |only precommit-0.2.0/precommit/man/hook_state_create.Rd |only precommit-0.2.0/precommit/man/install_precommit.Rd | 12 precommit-0.2.0/precommit/man/local_test_setup.Rd |only precommit-0.2.0/precommit/man/may_require_permanent_cache.Rd |only precommit-0.2.0/precommit/man/not_conda.Rd | 1 precommit-0.2.0/precommit/man/path_derive_precommit_exec.Rd | 6 precommit-0.2.0/precommit/man/precommit-package.Rd | 10 precommit-0.2.0/precommit/man/release_gh.Rd | 6 precommit-0.2.0/precommit/man/roxygen_assert_additional_dependencies.Rd |only precommit-0.2.0/precommit/man/roxygenize_with_cache.Rd |only precommit-0.2.0/precommit/man/run_test.Rd | 42 - precommit-0.2.0/precommit/man/run_test_impl.Rd | 26 precommit-0.2.0/precommit/man/snippet_generate.Rd |only precommit-0.2.0/precommit/man/uninstall_precommit.Rd | 7 precommit-0.2.0/precommit/man/update_impl.Rd |only precommit-0.2.0/precommit/man/update_precommit.Rd |only precommit-0.2.0/precommit/man/use_ci.Rd |only precommit-0.2.0/precommit/man/use_precommit.Rd | 20 precommit-0.2.0/precommit/man/use_precommit_config.Rd | 4 precommit-0.2.0/precommit/man/version_precommit.Rd |only precommit-0.2.0/precommit/tests/testthat/in/DESCRIPTION-no-deps.dcf |only precommit-0.2.0/precommit/tests/testthat/in/README.Rmd |only precommit-0.2.0/precommit/tests/testthat/in/README.md |only precommit-0.2.0/precommit/tests/testthat/in/Rprofile |only precommit-0.2.0/precommit/tests/testthat/in/WORDLIST | 1 precommit-0.2.0/precommit/tests/testthat/in/deps-in-desc-fail.Rmd |only precommit-0.2.0/precommit/tests/testthat/in/deps-in-desc-fail.Rnw |only precommit-0.2.0/precommit/tests/testthat/in/deps-in-desc-success.Rmd |only precommit-0.2.0/precommit/tests/testthat/in/deps-in-desc-success.Rnw |only precommit-0.2.0/precommit/tests/testthat/in/parsable-R-fail.Rmd |only precommit-0.2.0/precommit/tests/testthat/in/parsable-R-success.Rmd |only precommit-0.2.0/precommit/tests/testthat/in/roxygenize-cache-success.R |only precommit-0.2.0/precommit/tests/testthat/in/roxygenize.R |only precommit-0.2.0/precommit/tests/testthat/in/style-files-base-indention-success.R |only precommit-0.2.0/precommit/tests/testthat/in/style-files-cache-success.R |only precommit-0.2.0/precommit/tests/testthat/in/style-files-reindention-success.R |only precommit-0.2.0/precommit/tests/testthat/in/style-files-roxygen-success.R |only precommit-0.2.0/precommit/tests/testthat/reference-objects/pre-commit-config.yaml |only precommit-0.2.0/precommit/tests/testthat/test-cache.R |only precommit-0.2.0/precommit/tests/testthat/test-conda.R | 104 +-- precommit-0.2.0/precommit/tests/testthat/test-config.R | 29 precommit-0.2.0/precommit/tests/testthat/test-exec.R | 69 ++ precommit-0.2.0/precommit/tests/testthat/test-hook-roxygenize.R | 219 +++++-- precommit-0.2.0/precommit/tests/testthat/test-hooks-regex-exclude.R | 73 +- precommit-0.2.0/precommit/tests/testthat/test-hooks.R |only precommit-0.2.0/precommit/tests/testthat/test-setup.R |only precommit-0.2.0/precommit/tests/testthat/test-zzz.R |only precommit-0.2.0/precommit/vignettes/FAQ.Rmd | 52 - precommit-0.2.0/precommit/vignettes/available-hooks.Rmd | 165 +++-- precommit-0.2.0/precommit/vignettes/ci.Rmd |only precommit-0.2.0/precommit/vignettes/testing.Rmd |only 111 files changed, 2177 insertions(+), 1519 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1' and 'PostgreSQL'.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.5.1 dated 2021-11-26 and 0.6.0 dated 2021-12-01
DESCRIPTION | 14 +-- MD5 | 51 ++++++----- NAMESPACE | 9 ++ NEWS.md | 9 ++ R/create.R | 152 ++++++++++++++++++++++++++++++---- R/delete.R | 56 ++++++++++++ R/exists.R | 7 + R/get.R | 47 ++++++++++ R/list.R | 18 ++-- R/nodbi-package.R | 2 R/query.R | 182 ++++++++++++++++++++++++++++++++++++----- R/src.R | 7 + R/src_postgres.R |only R/src_sqlite.R | 8 - R/update.R | 55 ++++++++++-- man/docdb_create.Rd | 8 + man/docdb_delete.Rd | 15 ++- man/docdb_exists.Rd | 6 - man/docdb_get.Rd | 10 +- man/docdb_list.Rd | 12 +- man/docdb_query.Rd | 10 +- man/docdb_update.Rd | 11 +- man/nodbi-package.Rd | 2 man/src.Rd | 7 + man/src_postgres.Rd |only tests/testthat/core-nodbi.R | 23 +++-- tests/testthat/helper-nodbi.R | 9 ++ tests/testthat/test-postgres.R |only 28 files changed, 604 insertions(+), 126 deletions(-)
Title: Subset Partitioning via Anticlustering
Description: The method of anticlustering partitions a pool of elements
into groups (i.e., anticlusters) with the goal of maximizing
between-group similarity or within-group heterogeneity.
The anticlustering approach thereby reverses the logic
of cluster analysis that strives for high within-group homogeneity and
low similarity of the different groups. Computationally,
anticlustering is accomplished by maximizing instead of minimizing a
clustering objective function, such as the intra-cluster variance
(used in k-means clustering) or the sum of pairwise distances within
clusters. The function anticlustering() implements exact and
heuristic anticlustering algorithms as described in Papenberg and Klau
(2021; <doi:10.1037/met0000301>). The exact algorithms require that
the GNU linear programming kit
(<https://www.gnu.org/software/glpk/glpk.html>) is available and the R
package 'Rglpk' (<https://cran.R-project.org/package=Rglpk>) is
installed. A bicriterion anticlustering method proposed by Brusco et al.
(2020; <doi:10.1111/bmsp.12186>) is available through the function
bicriterion_anticlustering(). Some other functions are available to
solve classical clustering problems. The function
balanced_clustering() applies a cluster analysis under size
constraints, i.e., creates equal-sized clusters. The function
matching() can be used for (unrestricted, bipartite, or K-partite)
matching. The function wce() can be used optimally solve the
(weighted) cluster editing problem, also known as correlation
clustering, clique partitioning problem or transitivity clustering.
Author: Martin Papenberg [aut, cre] (<https://orcid.org/0000-0002-9900-4268>),
Meik Michalke [ctb] (centroid based clustering algorithm),
Gunnar W. Klau [ths],
Juliane V. Tkotz [ctb] (package logo),
Martin Breuer [ctb] (Bicriterion algorithm by Brusco et al.)
Maintainer: Martin Papenberg <martin.papenberg@hhu.de>
Diff between anticlust versions 0.5.6 dated 2020-11-24 and 0.6.0 dated 2021-12-01
DESCRIPTION | 71 +++++----- LICENSE | 2 MD5 | 60 +++++---- NAMESPACE | 1 R/bicriterion_iterated_local_search_call.R |only R/generate-partitions.R | 4 R/input-validation.R | 17 ++ R/objective-dispersion.R | 4 R/objective-diversity.R | 11 - R/objective-kplus.R | 4 R/objective-variance.R | 4 R/plotting.R | 2 R/wrapper-anticlustering.R | 176 +++++++++++++++------------ R/wrapper-clustering.R | 4 build/vignette.rds |binary inst/CITATION | 10 - inst/doc/stimulus-selection.Rmd | 4 inst/doc/stimulus-selection.html | 59 +++++---- inst/render.sh |only man/anticlustering.Rd | 143 +++++++++++---------- man/balanced_clustering.Rd | 4 man/bicriterion_anticlustering.Rd |only man/dispersion_objective.Rd | 4 man/diversity_objective.Rd | 11 - man/figures/clustering-1.png |binary man/figures/matching-1.png |binary man/generate_partitions.Rd | 4 man/kplus_objective.Rd | 4 man/variance_objective.Rd | 4 src/anticlust_init.c | 16 +- src/bicriterion_iterated_local_search_call.c |only src/header.h |only tests/testthat/test-brusco.R |only vignettes/stimulus-selection.Rmd | 4 34 files changed, 350 insertions(+), 277 deletions(-)
Title: Forecasting Using State Space Models
Description: Functions implementing Single Source of Error state space models for purposes of time series analysis and forecasting.
The package includes ADAM (Svetunkov, 2021, <https://openforecast.org/adam/>),
Exponential Smoothing (Hyndman et al., 2008, <doi: 10.1007/978-3-540-71918-2>),
SARIMA (Svetunkov & Boylan, 2019 <doi: 10.1080/00207543.2019.1600764>),
Complex Exponential Smoothing (Svetunkov & Kourentzes, 2018, <doi: 10.13140/RG.2.2.24986.29123>),
Simple Moving Average (Svetunkov & Petropoulos, 2018 <doi: 10.1080/00207543.2017.1380326>)
and several simulation functions. It also allows dealing with intermittent demand based on the
iETS framework (Svetunkov & Boylan, 2019, <doi: 10.13140/RG.2.2.35897.06242>).
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between smooth versions 3.1.3 dated 2021-09-22 and 3.1.4 dated 2021-12-01
smooth-3.1.3/smooth/man/refit.Rd |only smooth-3.1.4/smooth/DESCRIPTION | 8 +- smooth-3.1.4/smooth/MD5 | 36 ++++----- smooth-3.1.4/smooth/NAMESPACE | 10 +- smooth-3.1.4/smooth/NEWS | 11 ++ smooth-3.1.4/smooth/R/adam.R | 75 ++++++++++-------- smooth-3.1.4/smooth/R/methods.R | 2 smooth-3.1.4/smooth/build/partial.rdb |binary smooth-3.1.4/smooth/build/vignette.rds |binary smooth-3.1.4/smooth/inst/doc/adam.html | 106 +++++++++++++------------- smooth-3.1.4/smooth/inst/doc/ces.html | 29 +++---- smooth-3.1.4/smooth/inst/doc/es.html | 72 ++++++++---------- smooth-3.1.4/smooth/inst/doc/gum.html | 8 +- smooth-3.1.4/smooth/inst/doc/oes.html | 115 ++++++++++++++--------------- smooth-3.1.4/smooth/inst/doc/simulate.html | 76 +++++++++---------- smooth-3.1.4/smooth/inst/doc/sma.html | 6 - smooth-3.1.4/smooth/inst/doc/smooth.html | 4 - smooth-3.1.4/smooth/inst/doc/ssarima.html | 30 +++---- smooth-3.1.4/smooth/man/forecast.smooth.Rd | 20 ++++- smooth-3.1.4/smooth/man/reapply.Rd |only 20 files changed, 320 insertions(+), 288 deletions(-)
Title: Cosmic Microwave Background Data Analysis
Description: Handling and Analysing Spherical,
HEALPix and Cosmic Microwave Background data on a HEALPix grid.
Author: Daniel Fryer [aut, cre] (<https://orcid.org/0000-0001-6032-0522>),
Andriy Olenko [aut] (<https://orcid.org/0000-0002-0917-7000>),
Ming Li [aut] (<https://orcid.org/0000-0002-1218-2804>),
Yuguang Wang [aut]
Maintainer: Daniel Fryer <d.fryer@latrobe.edu.au>
Diff between rcosmo versions 1.1.2 dated 2020-02-14 and 1.1.3 dated 2021-12-01
DESCRIPTION | 9 ++--- MD5 | 70 +++++++++++++++++++++--------------------- NEWS.md | 13 +++++++ R/CMBDat.R | 3 + R/CMBDataFrameGenerics.R | 2 - R/Downloaders.R | 35 +++++++++++++++------ R/HPDataFrame.R | 4 +- R/MathHelpers.R | 2 - R/NestSearch.R | 1 README.md | 14 +++----- man/CMBDataFrame.Rd | 15 +++++++-- man/HPDataFrame.Rd | 16 +++++++-- man/corrCMB.Rd | 11 +++++- man/covCMB.Rd | 11 +++++- man/covmodelCMB.Rd | 8 +++- man/displayPixelBoundaries.Rd | 16 +++++++-- man/displayPixels.Rd | 14 ++++++-- man/downloadCMBMap.Rd | 11 ++++-- man/downloadCMBPS.Rd | 4 +- man/fRen.Rd | 10 ++++-- man/jacobiPol.Rd | 2 - man/numeric2col.Rd | 7 +++- man/pixelWindow.Rd | 3 + man/plot.CMBDataFrame.Rd | 24 +++++++++++--- man/plot.CMBWindow.Rd | 16 +++++++-- man/plot.HPDataFrame.Rd | 24 +++++++++++--- man/plotcovmodelCMB.Rd | 11 +++++- man/plotvariogram.Rd | 11 +++++- man/variofitCMB.Rd | 20 +++++++++--- man/variogramCMB.Rd | 11 +++++- man/window.CMBDataFrame.Rd | 3 - man/window.HPDataFrame.Rd | 3 - src/CovCMBHelpers.cpp | 1 src/Manipulation.cpp | 7 ++-- src/MathHelpers.cpp | 1 src/RcppExports.cpp | 5 +++ 36 files changed, 297 insertions(+), 121 deletions(-)
Title: Statistical Tools for Filebacked Big Matrices
Description: Easy-to-use, efficient, flexible and scalable statistical tools.
Package bigstatsr provides and uses Filebacked Big Matrices via memory-mapping.
It provides for instance matrix operations, Principal Component Analysis,
sparse linear supervised models, utility functions and more
<doi:10.1093/bioinformatics/bty185>.
Author: Florian Privé [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths]
Maintainer: Florian Privé <florian.prive.21@gmail.com>
Diff between bigstatsr versions 1.5.1 dated 2021-04-05 and 1.5.5 dated 2021-12-01
DESCRIPTION | 8 - MD5 | 92 ++++++------- NEWS.md | 8 + R/FBM.R | 11 + R/pcor.R | 25 ++- README.md | 6 build/partial.rdb |binary man/AUC.Rd | 130 +++++++++---------- man/COPY_biglasso_part.Rd | 112 ++++++++-------- man/Extract.Rd | 64 ++++----- man/FBM-class.Rd | 267 ++++++++++++++++++++-------------------- man/FBM-methods.Rd | 102 +++++++-------- man/FBM.code256-class.Rd | 152 +++++++++++----------- man/Replace.Rd | 68 +++++----- man/asPlotlyText.Rd | 62 ++++----- man/big_apply.Rd | 158 +++++++++++------------ man/big_attach.Rd | 60 ++++---- man/big_colstats.Rd | 116 ++++++++--------- man/big_copy.Rd | 142 ++++++++++----------- man/big_cor.Rd | 136 ++++++++++---------- man/big_counts.Rd | 104 +++++++-------- man/big_crossprodSelf.Rd | 168 ++++++++++++------------- man/big_increment.Rd | 66 ++++----- man/big_parallelize.Rd | 196 ++++++++++++++--------------- man/big_read.Rd | 118 ++++++++--------- man/big_scale.Rd | 96 +++++++------- man/big_tcrossprodSelf.Rd | 168 ++++++++++++------------- man/big_transpose.Rd | 60 ++++---- man/big_univLinReg.Rd | 182 +++++++++++++-------------- man/big_univLogReg.Rd | 214 ++++++++++++++++---------------- man/big_write.Rd | 90 ++++++------- man/bigstatsr-package.Rd | 178 +++++++++++++------------- man/block_size.Rd | 52 +++---- man/covar_from_df.Rd | 46 +++--- man/get_beta.Rd | 40 ++--- man/pasteLoc.Rd | 62 ++++----- man/pcor.Rd | 56 ++++---- man/plot.big_SVD.Rd | 190 ++++++++++++++-------------- man/plot.big_sp_list.Rd | 48 +++---- man/plot.mhtest.Rd | 102 +++++++-------- man/predict.big_SVD.Rd | 168 ++++++++++++------------- man/predict.mhtest.Rd | 56 ++++---- man/sub_bk.Rd | 54 ++++---- man/summary.big_sp_list.Rd | 52 +++---- man/without_downcast_warning.Rd | 40 ++--- tests/testthat/helper-init.R | 4 tests/testthat/test-pcor.R | 19 ++ 47 files changed, 2204 insertions(+), 2144 deletions(-)
Title: Interactive Graphs with R
Description: Creates interactive graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package.
Author: Carlos Prieto <cprietos@usal.es>,
David Barrios <metal@usal.es>
Maintainer: Carlos Prieto <cprietos@usal.es>
Diff between RJSplot versions 2.5 dated 2017-11-02 and 2.7 dated 2021-12-01
DESCRIPTION | 10 - MD5 | 114 +++++++------- R/barplot.R | 4 R/boxplot.R | 19 +- R/bubbles.R | 5 R/circularfv.R | 2 R/dendrogram.R | 4 R/densityplot.R | 4 R/genomemap.R | 4 R/heatmap.R | 2 R/manhattan.R | 22 ++ R/network.R | 8 - R/pie.R | 2 R/scatterplot.R | 30 ++- R/tables.R | 2 R/three.R | 4 R/toJSON.R | 74 ++++----- R/utils.R | 4 R/wordcloud.R | 2 inst/CITATION | 2 inst/www/barplot.js | 29 ++- inst/www/boxplot.js | 192 +++++++++++++------------ inst/www/bubbles.js | 27 ++- inst/www/density.js | 6 inst/www/functions.js | 24 +++ inst/www/genomemap.js | 2 inst/www/heatmap.js | 18 +- inst/www/manhattan.js | 335 +++++++++++++++++++++++++++----------------- inst/www/network.js | 1 inst/www/plot.js | 41 ++--- inst/www/symheatmap.js | 63 +++----- man/GRCh37.Rd | 2 man/GRCh38.Rd | 2 man/NCBI36.Rd | 2 man/R4web.Rd | 4 man/RJSplot.Rd | 4 man/barplot_rjs.Rd | 14 + man/boxplot_rjs.Rd | 17 +- man/bubbles_rjs.Rd | 12 - man/circularfv_rjs.Rd | 10 - man/createAssembly.Rd | 6 man/dendrogram_rjs.Rd | 12 - man/densityplot_rjs.Rd | 12 - man/genomemap_rjs.Rd | 14 - man/getAssemblyFromFasta.Rd | 6 man/heatmap_rjs.Rd | 18 +- man/hiveplot_rjs.Rd | 15 + man/manhattan_rjs.Rd | 15 + man/network_rjs.Rd | 15 + man/newInput.Rd | 4 man/piechart_rjs.Rd | 12 - man/report_rjs.Rd | 4 man/scatter3d_rjs.Rd | 17 +- man/scatterplot_rjs.Rd | 23 +-- man/surface3d_rjs.Rd | 12 - man/symheatmap_rjs.Rd | 15 + man/tables_rjs.Rd | 12 - man/wordcloud_rjs.Rd | 12 - 58 files changed, 776 insertions(+), 571 deletions(-)
Title: Companion to "Learning Statistics with R"
Description: A collection of tools intended to make introductory
statistics easier to teach, including wrappers for common
hypothesis tests and basic data manipulation. It accompanies
Navarro, D. J. (2015). Learning Statistics with R: A Tutorial
for Psychology Students and Other Beginners, Version 0.6.
Author: Danielle Navarro [aut, cre] (<https://orcid.org/0000-0001-7648-6578>)
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between lsr versions 0.5.1 dated 2021-09-20 and 0.5.2 dated 2021-12-01
lsr-0.5.1/lsr/R/maxFreq.R |only lsr-0.5.2/lsr/DESCRIPTION | 14 +++++++++----- lsr-0.5.2/lsr/MD5 | 36 ++++++++++++++++++++++++++++++------ lsr-0.5.2/lsr/NEWS | 5 +++++ lsr-0.5.2/lsr/R/expandFactors.R | 1 - lsr-0.5.2/lsr/R/modeOf.R | 27 +++++++++++++++++++++++++++ lsr-0.5.2/lsr/README.md | 11 +++++------ lsr-0.5.2/lsr/tests |only 8 files changed, 76 insertions(+), 18 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] (Lecturer at Centre for Marketing Analytics
and Forecasting, Lancaster University, UK),
Yves R. Sagaert [ctb] (Visiting Research at Centre for Marketing
Analytics and Forecasting, Lancaster University, UK)
Maintainer: Ivan Svetunkov <ivan@svetunkov.ru>
Diff between greybox versions 1.0.1 dated 2021-09-22 and 1.0.2 dated 2021-12-01
DESCRIPTION | 8 +- MD5 | 22 +++--- NEWS | 11 +++ R/alm.R | 1 R/spread.R | 2 R/zzz.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.html | 153 ++++++++++++++++++++----------------------- inst/doc/greybox.html | 6 - inst/doc/maUsingGreybox.html | 4 - inst/doc/ro.html | 14 +-- 12 files changed, 115 insertions(+), 108 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash' and 'blake3' algorithms) permitting easy
comparison of R language objects, as well as functions such as'hmac()' to
create hash-based message authentication code. Please note that this package
is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be
used.
Author: Dirk Eddelbuettel <edd@debian.org> with contributions
by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,
Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell,
Matthew de Queljoe, Ion Suruceanu, Bill Denney, Dirk Schumacher,
and Winston Chang.
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.28 dated 2021-09-23 and 0.6.29 dated 2021-12-01
digest-0.6.28/digest/inst/doc/sha1.Rmd |only digest-0.6.28/digest/vignettes/sha1.Rmd |only digest-0.6.29/digest/ChangeLog | 25 + digest-0.6.29/digest/DESCRIPTION | 12 digest-0.6.29/digest/MD5 | 21 digest-0.6.29/digest/README.md | 6 digest-0.6.29/digest/build/vignette.rds |binary digest-0.6.29/digest/inst/doc/sha1.R | 15 digest-0.6.29/digest/inst/doc/sha1.html | 716 +++++++++++++++---------------- digest-0.6.29/digest/inst/doc/sha1.md |only digest-0.6.29/digest/man/AES.Rd | 1 digest-0.6.29/digest/src/digest.c | 2 digest-0.6.29/digest/vignettes/sha1.md |only digest-0.6.29/digest/vignettes/water.css |only 14 files changed, 412 insertions(+), 386 deletions(-)
Title: Projected t-SNE for Batch Correction
Description: Implements the projected t-SNE method for batch correction of
high-dimensional data. Please see Aliverti et al. (2020)
<doi:10.1093/bioinformatics/btaa189> for more information.
Author: Dayne L Filer [aut, cre],
Emanuele Aliverti [aut],
Jeff Tilson [aut],
Kirk C Wilhelmsen [aut],
David B Dunson [aut]
Maintainer: Dayne L Filer <dayne.filer@gmail.com>
Diff between bcTSNE versions 0.10.0 dated 2020-04-28 and 0.11.1 dated 2021-12-01
DESCRIPTION | 15 +++++++-------- MD5 | 14 +++++++------- build/vignette.rds |binary inst/doc/simExperiment.R | 4 ++-- inst/doc/simExperiment.Rnw | 4 ++-- inst/doc/simExperiment.pdf |binary src/tsne.c | 15 ++++++++++----- vignettes/simExperiment.Rnw | 4 ++-- 8 files changed, 30 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-01 0.5.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-10 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-09 1.0.6
Title: High Mach Finds Routes for Supersonic Aircraft
Description: For supersonic aircraft, flying subsonic over land,
High Mach finds the best route between airports. Allows for coastal buffer and
potentially closed regions. Uses a minimal model of aircraft
performance: the focus is on time saved versus subsonic flight, rather
than on vertical flight profile. For modelling and forecasting, not for planning your
flight!
Author: David Marsh [aut, cre],
EUROCONTROL [fnd, cph]
Maintainer: David Marsh <david.marsh@eurocontrol.int>
Diff between himach versions 0.2.2 dated 2021-11-21 and 0.2.3 dated 2021-12-01
DESCRIPTION | 6 ++-- MD5 | 40 +++++++++++++++---------------- NEWS.md | 4 +++ R/grids.R | 4 +-- R/maps.R | 6 ++-- R/routes.R | 7 +++-- R/utils.R | 25 +++++++++++++------ README.md | 1 data/crs_120E.rda |binary data/crs_Atlantic.rda |binary data/crs_N.rda |binary data/crs_Pacific.rda |binary data/crs_S.rda |binary data/crs_longlat.rda |binary inst/doc/Supersonic_Routes.html | 22 ++++++++--------- inst/doc/Supersonic_Routes_in_depth.html | 10 +++---- man/find_leg.Rd | 5 ++- man/find_route.Rd | 2 - man/make_airports.Rd | 2 - tests/testthat/test_grid.R | 5 +++ tests/testthat/test_routes.R | 5 +++ 21 files changed, 85 insertions(+), 59 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Daniel Hocking [ctb, cre] (<https://orcid.org/0000-0003-1889-9184>),
Brooke Anderson [ctb],
Maëlle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd] (https://ropensci.org)
Maintainer: Daniel Hocking <djhocking@gmail.com>
Diff between rnoaa versions 1.3.7 dated 2021-11-18 and 1.3.8 dated 2021-12-01
DESCRIPTION | 11 ++++------ MD5 | 22 ++++++++++---------- NAMESPACE | 1 NEWS.md | 10 +++++++++ R/rnoaa-package.r | 39 ++++++++++++++++++------------------- man/figures/unnamed-chunk-13-1.png |binary man/figures/unnamed-chunk-14-1.png |binary tests/testthat/test-arc2.R | 2 + tests/testthat/test-ersst.R | 4 ++- tests/testthat/test-isd.R | 4 +-- tests/testthat/test-lcd.R | 4 +++ tests/testthat/test-storm_events.R | 2 + 12 files changed, 58 insertions(+), 41 deletions(-)
Title: Polychoric and Polyserial Correlations
Description: Computes polychoric and polyserial correlations by quick "two-step" methods or ML,
optionally with standard errors; tetrachoric and biserial correlations are special cases.
Author: John Fox [aut, cre]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between polycor versions 0.7-10 dated 2019-08-05 and 0.8-0 dated 2021-12-01
DESCRIPTION | 15 +- MD5 | 24 ++-- NAMESPACE | 27 ++-- NEWS | 10 + R/hetcor.R | 14 +- R/hetcor.data.frame.R | 296 +++++++++++++++++++++++++++++++++++++------------- R/hetcor.default.R | 24 ++-- R/polychor.R | 213 +++++++++++++++++++---------------- R/polyserial.R | 187 ++++++++++++++++--------------- man/hetcor.Rd | 33 ++++- man/polychor.Rd | 5 man/polyserial.Rd | 8 - man/print.polycor.Rd | 93 +++++++-------- 13 files changed, 584 insertions(+), 365 deletions(-)
Title: Open-Source Software for 'Omic' Data Analysis and Visualization
Description: A tool for interactive exploration of the results from 'omics'
experiments to facilitate novel discoveries from high-throughput biology. The
software includes R functions for the 'bioinformatician' to deposit study
metadata and the outputs from statistical analyses (e.g. differential
expression, enrichment). These results are then exported to an interactive
JavaScript dashboard that can be interrogated on the user’s local machine or
deployed online to be explored by collaborators. The dashboard includes
'sortable' tables, interactive plots including network visualization, and
fine-grained filtering based on statistical significance.
Author: Terrence Ernst [aut] (Web application),
John Blischak [aut, cre] (<https://orcid.org/0000-0003-2634-9879>),
Paul Nordlund [aut] (Web application),
Justin Moore [aut] (UpSet-related functions and web application),
Joe Dalen [aut] (Barcode functionality and web application),
Akshay Bhamidipati [aut] (Web application),
Brett Engelmann [aut],
Marco Curado [aut] (Improved plotting capabilities),
AbbVie Inc. [cph, fnd]
Maintainer: John Blischak <jdblischak@gmail.com>
Diff between OmicNavigator versions 1.4.3 dated 2021-08-05 and 1.8.0 dated 2021-12-01
DESCRIPTION | 9 MD5 | 73 ++-- NAMESPACE | 2 NEWS.md | 81 ++++ R/add.R | 53 ++- R/check.R | 50 ++ R/export.R | 10 R/get.R | 21 + R/plots.R | 266 ++++++++++++--- R/sanitize.R | 4 R/tests.R | 101 +++++ R/validate.R | 92 ++++- R/zzz.R | 2 README.md | 25 - build/partial.rdb |binary inst/doc/OmicNavigatorAPI.R | 69 ++-- inst/doc/OmicNavigatorAPI.Rnw | 51 ++- inst/doc/OmicNavigatorAPI.pdf |binary inst/doc/OmicNavigatorUsersGuide.R | 67 ++- inst/doc/OmicNavigatorUsersGuide.Rnw | 56 ++- inst/doc/OmicNavigatorUsersGuide.pdf |binary inst/tinytest/testAdd.R | 4 inst/tinytest/testApp.R | 20 + inst/tinytest/testBugs.R |only inst/tinytest/testCheck.R | 98 +++++ inst/tinytest/testExport.R | 5 inst/tinytest/testGet.R | 28 + inst/tinytest/testGetNumeric.R | 24 + inst/tinytest/testPlot.R | 574 +++++++++++++++++++++++++++++++++- inst/tinytest/testValidate.R | 56 +++ man/addMapping.Rd |only man/addPlots.Rd | 20 - man/createStudy.Rd | 21 - man/getInstalledStudies.Rd | 4 man/getMapping.Rd |only man/getPlottingData.Rd | 18 - man/plotStudy.Rd | 13 vignettes/OmicNavigatorAPI.Rnw | 51 ++- vignettes/OmicNavigatorUsersGuide.Rnw | 56 ++- 39 files changed, 1793 insertions(+), 231 deletions(-)