Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.app/>).
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>)
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 2.0 dated 2021-08-20 and 2.2 dated 2021-12-04
DESCRIPTION | 12 MD5 | 153 NAMESPACE | 11 NEWS.md | 23 R/apsim_classic.R | 12 R/apsim_internal.R | 167 R/apsim_met.R | 631 R/apsimx.R | 127 R/apsimx_soil_profile.R | 669 R/compare_apsim.R | 104 R/compare_apsim_met.R | 465 R/edit_apsim.R | 9 R/edit_apsim_replace_soil_profile.R | 63 R/edit_apsimx_json.R | 68 R/edit_apsimx_replace_soil_profile.R | 136 R/edit_apsimx_replacement.R | 59 R/get_chirps_apsim_met.R |only R/get_daymet_apsim_met.R | 5 R/get_gsod_apsim_met.R | 2 R/get_iemre_apsim_met.R | 19 R/get_isric_soil_profile.R | 75 R/get_power_apsim_met.R | 8 R/get_ssurgo_soil_profile.R | 15 R/get_ssurgo_tables.R | 77 R/inspect_apsimx_json.R | 115 R/inspect_apsimx_replacement.R | 63 R/optim_apsim.R | 6 R/optim_apsimx.R | 34 R/sens_apsim.R | 2 R/sens_apsimx.R | 571 R/ssurgo2sp.R | 23 R/unit_conv.R | 102 R/zzz.R | 22 README.md | 22 build/partial.rdb |only inst/doc/apsimx-scripts.R | 2 inst/doc/apsimx-scripts.Rmd | 40 inst/doc/apsimx-scripts.html | 42 inst/doc/apsimx.R | 4 inst/doc/apsimx.Rmd | 29 inst/doc/apsimx.html | 95 inst/doc/optim-apsim.html | 7 inst/doc/sensitivity-apsim.html | 18 inst/extdata/MaizeSoybean.apsimx |32994 +++++++++++++-------------- inst/extdata/MaizeSoybean.db |only inst/extdata/Wheat-opt-ex.apsimx | 623 inst/extdata/Wheat-opt-ex.db |only man/apsimx.options.Rd | 2 man/apsimx_options.Rd | 7 man/apsimx_soil_profile.Rd | 17 man/carbon_stocks.Rd |only man/compare_apsim.Rd | 13 man/compare_apsim_met.Rd | 20 man/compare_apsim_soil_profile.Rd |only man/edit_apsimx_replace_soil_profile.Rd | 5 man/edit_apsimx_replacement.Rd | 5 man/get_chirps_apsim_met.Rd |only man/get_daymet2_apsim_met.Rd | 2 man/get_power_apsim_met.Rd | 6 man/get_ssurgo_tables.Rd | 13 man/inspect_apsimx.Rd | 4 man/optim_apsim.Rd | 6 man/optim_apsimx.Rd | 11 man/plot.met.Rd |only man/sens_apsimx.Rd | 16 man/soilorganicmatter_parms.Rd |only man/soilwat_parms.Rd | 9 man/ssurgo2sp.Rd | 9 man/summary.met.Rd |only man/tt_apsim_met.Rd | 5 man/unit_conv.Rd | 18 man/xargs_apsimx.Rd | 14 tests/test_apsim_met_tt.R |only tests/test_edit.R | 43 tests/test_edit_apsim_replace_soil_profile.R | 40 tests/test_edit_apsimx_replacement.R | 28 tests/test_extract_values_apsimx.R | 27 tests/test_inspect.R | 142 tests/test_inspect_apsimx_json.R | 6 tests/test_optim_apsimx.R | 30 tests/test_ssurgo2sp.R | 14 vignettes/apsimx-scripts.Rmd | 40 vignettes/apsimx.Rmd | 29 83 files changed, 20348 insertions(+), 17957 deletions(-)
Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and
'Bibentry'. Includes a port of the 'bibutils' utilities by Chris
Putnam <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] (R port, R code, new C code and
modifications to bibutils' C code, conversion to Bibentry (R and C
code)),
Chris Putman [aut] (src/*, author of the bibutils libraries,
https://sourceforge.net/projects/bibutils/),
Richard Mathar [ctb] (src/addsout.c),
Johannes Wilm [ctb] (src/biblatexin.c, src/bltypes.c)
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.2.4 dated 2021-10-11 and 2.2.5 dated 2021-12-04
DESCRIPTION | 8 MD5 | 83 ++- NEWS.md | 28 + R/bib.R | 77 ++- R/bibentry.R | 164 ++++-- R/convert.R | 12 R/import.R | 9 README.md | 2 build/partial.rdb |binary inst/bib/biblatex-examples_sans_key_aksin.bib |only inst/bib/ebi.xml |only inst/bib/extra.bib |only inst/bib/latin1accents_utf8a.bib | 2 inst/bib/latin1accents_utf8a1.bib |only inst/bib/pubmed-balloongui-set.nbib |only inst/bib/pubmed-balloongui-set_09_31542275.nbib |only inst/bib/single.nbib |only inst/bib/tex.bib |only inst/bib/texChars.bib |only inst/bib/xampl_modified.bib |only man/readBib.Rd | 23 src/any2xml.c | 3 src/bib2be.c | 235 ++++----- src/bibcore.c | 71 +- src/bibentrydirectout.c | 287 +++++------ src/bibprog.c | 16 src/bibtexdirectin.c | 288 +++++------ src/bibtexin.c | 172 +++--- src/bibutils.h | 2 src/ebiin.c | 6 src/latex.c | 65 +- src/latex.h | 1 src/name.c | 599 ++++++++++++------------ src/name.h | 2 src/nbibin.c | 33 - src/nbibout.c | 2 src/str_conv.c | 18 src/xml2any.c | 1 tests/testthat/bibacc_2.rds |binary tests/testthat/bibacc_3.rds |binary tests/testthat/issue_5rdpack.rds |only tests/testthat/test-bib.R | 44 + tests/testthat/test-convert.R | 156 +++++- tests/testthat/texChars_converted.rds |only tests/testthat/texChars_exported.rds |only tests/testthat/texChars_kept.rds |only tests/testthat/xampl2biblatex.rds |only tests/testthat/xampl_1.rds |only tests/testthat/xampl_bbl2bib.rds |only tests/testthat/xampl_bib2ads.rds |only tests/testthat/xampl_bib2end.rds |only tests/testthat/xampl_bib2isi.rds |only tests/testthat/xampl_isi2bib.rds |only 53 files changed, 1450 insertions(+), 959 deletions(-)
Title: Latent Class Capture-Recapture Models
Description: Estimation of latent class models with individual covariates for capture-recapture data. See Forcina and Bartolucci (2021)<arxiv:2106.03811>.
Author: Francesco Bartolucci [aut, cre],
Antonio Forcina [aut]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LCCR versions 1.2 dated 2021-10-03 and 1.3 dated 2021-12-04
DESCRIPTION | 8 ++++---- MD5 | 25 +++++++++++++++---------- NAMESPACE | 4 +++- R/estLCCR.R | 1 - R/estLCCRcon.R |only R/lkLCCR.R | 1 - R/lkLCCRcon.R |only R/print.estLCCRcon.R |only R/summary.estLCCRcon.R |only build/partial.rdb |binary man/LCCR-package.Rd | 4 ++++ man/data_sim2.Rd | 2 ++ man/data_sim3.Rd | 8 ++++---- man/estLCCRcon.Rd |only man/print.Rd | 4 +++- man/summary.Rd | 4 +++- 16 files changed, 38 insertions(+), 23 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.22 dated 2021-08-02 and 1.5.23 dated 2021-12-04
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++++++++------- NAMESPACE | 2 +- R/ABlines.R | 2 +- R/ABtext.R | 4 ++-- R/RMlines.R | 4 ++-- R/RSarrow.R |only R/RSlines.R |only R/RSstat.R |only R/RStext.R |only R/TauUabove.R |only R/TauUbelow.R |only man/ABanova.Rd | 2 +- man/ABarrow.Rd | 4 ++-- man/RSarrow.Rd |only man/RSlines.Rd |only man/RSstat.Rd |only man/RStext.Rd |only man/TauUabove.Rd |only man/TauUbelow.Rd |only 20 files changed, 32 insertions(+), 20 deletions(-)
Title: Biomarker Threshold Models
Description: Contains tools to fit both predictive and prognostic biomarker effects using biomarker threshold models and continuous threshold models. Evaluate the treatment effect, biomarker effect and treatment-biomarker interaction using probability index measurement. Test for treatment-biomarker interaction using residual bootstrap method.
Author: Bingshu E. Chen
Maintainer: Bingshu E. Chen <bingshu.chen@queensu.ca>
Diff between bhm versions 1.16 dated 2020-04-13 and 1.17 dated 2021-12-04
DESCRIPTION | 8 - MD5 | 28 ++-- NAMESPACE | 16 +- R/bhm_lib.R | 3 R/brm.R | 363 +++++++++++++++++++++++++++++++++++------------------ R/glmpLRT.R |only R/mpl.R | 11 + R/pIndex.R | 4 R/picexp.R |only R/resboot.R | 15 +- man/bhm-package.Rd | 2 man/brm.Rd | 29 ++-- man/glmpLRT.Rd |only man/mpl.Rd | 10 - man/picexp.Rd |only man/print.Rd | 2 man/resboot.Rd | 2 17 files changed, 330 insertions(+), 163 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Description: As a pipeline toolkit for Statistics and data science in R,
the 'targets' package brings together function-oriented programming and
'Make'-like declarative workflows.
It analyzes the dependency relationships among the tasks of a workflow,
skips steps that are already up to date, runs the necessary
computation with optional parallel workers, abstracts files as
R objects, and provides tangible evidence that the results match
the underlying code and data. The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Matthew T. Warkentin [ctb],
Samantha Oliver [rev] (<https://orcid.org/0000-0001-5668-1165>),
Tristan Mahr [rev] (<https://orcid.org/0000-0002-8890-5116>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.8.1 dated 2021-10-26 and 0.9.0 dated 2021-12-04
DESCRIPTION | 23 - MD5 | 159 ++++++------ NAMESPACE | 3 NEWS.md | 29 ++ R/class_active.R | 11 R/class_aws.R | 151 +++++++---- R/class_aws_file.R | 39 +- R/class_builder.R | 32 ++ R/class_reporter.R | 8 R/class_resources_aws.R | 19 + R/class_runtime.R | 33 ++ R/class_timestamp_positives.R |only R/class_verbose_positives.R |only R/tar_config_set.R | 17 - R/tar_make.R | 12 R/tar_make_clustermq.R | 2 R/tar_make_future.R | 2 R/tar_outdated.R | 2 R/tar_package.R | 1 R/tar_path.R | 8 R/tar_reprex.R |only R/tar_resources_aws.R | 14 - R/tar_sitrep.R | 2 R/tar_store.R |only R/tar_target.R | 4 R/tar_target_raw.R | 4 R/tar_test.R | 2 R/utils_assert.R | 9 R/utils_aws.R |only R/utils_path.R | 12 build/partial.rdb |binary inst/WORDLIST | 1 man/tar_assert.Rd | 3 man/tar_cancel.Rd | 3 man/tar_definition.Rd | 3 man/tar_envir.Rd | 3 man/tar_group.Rd | 3 man/tar_make.Rd | 10 man/tar_make_clustermq.Rd | 10 man/tar_make_future.Rd | 10 man/tar_name.Rd | 3 man/tar_path.Rd | 16 - man/tar_reprex.Rd |only man/tar_resources_aws.Rd | 15 + man/tar_seed.Rd | 3 man/tar_store.Rd |only man/tar_target.Rd | 4 man/tar_target_raw.Rd | 4 man/targets-package.Rd | 1 man/use_targets.Rd | 1 tests/aws/test-aws-hpc.R | 21 - tests/aws/test-class_aws_file.R | 113 ++++++-- tests/aws/test-class_aws_parquet.R | 14 - tests/aws/test-class_aws_qs.R | 313 +++++++++++++++++------- tests/aws/test-deprecated-resources.R | 27 -- tests/aws/test-prefix.R | 15 - tests/aws/test-utils_aws.R |only tests/hpc/sge_clustermq.tmpl | 2 tests/interactive/test-class_url.R | 4 tests/interactive/test-keras.R | 1 tests/interactive/test-reporter.R | 14 + tests/interactive/test-tar_reprex.R |only tests/interactive/test-tar_watch.R | 3 tests/performance/test-data.R | 2 tests/performance/test-memory.R | 4 tests/performance/test-stems.R | 2 tests/testthat/helper-aws.R | 55 +++- tests/testthat/test-class_active.R | 12 tests/testthat/test-class_aws.R |only tests/testthat/test-class_aws_feather.R | 4 tests/testthat/test-class_aws_file.R | 22 + tests/testthat/test-class_aws_fst.R | 4 tests/testthat/test-class_aws_fst_dt.R | 4 tests/testthat/test-class_aws_fst_tbl.R | 4 tests/testthat/test-class_aws_keras.R | 4 tests/testthat/test-class_aws_parquet.R | 4 tests/testthat/test-class_aws_qs.R | 4 tests/testthat/test-class_aws_rds.R | 9 tests/testthat/test-class_aws_torch.R | 4 tests/testthat/test-class_runtime.R | 29 ++ tests/testthat/test-class_timestamp_positives.R |only tests/testthat/test-class_verbose.R | 2 tests/testthat/test-class_verbose_positives.R |only tests/testthat/test-tar_path.R | 16 + tests/testthat/test-tar_resources_aws.R | 16 + tests/testthat/test-tar_store.R |only tests/testthat/test-utils_assert.R | 8 87 files changed, 1008 insertions(+), 419 deletions(-)
Title: 'Rcpp' Interface to the APT Package Manager
Description: The 'APT Package Management System' provides Debian and
Debian-derived Linux systems with a powerful system to resolve package
dependencies. This package offers access directly from R. This can
only work on a system with a suitable 'libapt-pkg-dev' installation
so functionality is curtailed if such a library is not found.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppAPT versions 0.0.7 dated 2021-04-16 and 0.0.8 dated 2021-12-04
RcppAPT-0.0.7/RcppAPT/inst/doc/binnmuAfterR340.R |only RcppAPT-0.0.7/RcppAPT/inst/doc/binnmuAfterR340.Rmd |only RcppAPT-0.0.7/RcppAPT/vignettes/binnmuAfterR340.Rmd |only RcppAPT-0.0.8/RcppAPT/ChangeLog | 20 RcppAPT-0.0.8/RcppAPT/DESCRIPTION | 12 RcppAPT-0.0.8/RcppAPT/MD5 | 19 RcppAPT-0.0.8/RcppAPT/README.md | 1 RcppAPT-0.0.8/RcppAPT/build/vignette.rds |binary RcppAPT-0.0.8/RcppAPT/inst/NEWS.Rd | 18 RcppAPT-0.0.8/RcppAPT/inst/doc/binnmuAfterR340.html | 1191 +++++++++----------- RcppAPT-0.0.8/RcppAPT/inst/doc/binnmuAfterR340.md |only RcppAPT-0.0.8/RcppAPT/tests/version.R |only RcppAPT-0.0.8/RcppAPT/vignettes/binnmuAfterR340.md |only RcppAPT-0.0.8/RcppAPT/vignettes/water.css |only 14 files changed, 649 insertions(+), 612 deletions(-)
Title: Kernel Density Estimation
Description: A collection of functions related to density estimation by using Chen's (2000) idea. Mean Squared Errors (MSE) are calculated for estimated curves. For this purpose, R functions allow the distribution to be Gamma, Exponential or Weibull. For details see Chen (2000), Scaillet (2004) <doi:10.1080/10485250310001624819> and Khan and Akbar.
Author: Javaria Ahmad Khan, Atif Akbar.
Maintainer: Javaria Ahmad Khan <jakhan0@yahoo.com>
Diff between AsyK versions 1.5.4 dated 2020-02-13 and 1.5.5 dated 2021-12-04
AsyK-1.5.4/AsyK/man/compLR.Rd |only AsyK-1.5.4/AsyK/man/laphcomp.Rd |only AsyK-1.5.4/AsyK/man/mseLap.Rd |only AsyK-1.5.4/AsyK/man/mseRIG.Rd |only AsyK-1.5.4/AsyK/man/righcomp.Rd |only AsyK-1.5.5/AsyK/DESCRIPTION | 13 AsyK-1.5.5/AsyK/MD5 | 24 - AsyK-1.5.5/AsyK/NAMESPACE | 22 - AsyK-1.5.5/AsyK/R/AsyK.R | 702 +++++++----------------------------- AsyK-1.5.5/AsyK/man/AsyK-package.Rd | 6 AsyK-1.5.5/AsyK/man/Laplace.Rd | 41 +- AsyK-1.5.5/AsyK/man/MSE.Rd |only AsyK-1.5.5/AsyK/man/NSR.Rd | 4 AsyK-1.5.5/AsyK/man/RIG.Rd | 43 +- AsyK-1.5.5/AsyK/man/plot.Laplace.Rd | 23 - AsyK-1.5.5/AsyK/man/plot.RIG.Rd | 27 - 16 files changed, 276 insertions(+), 629 deletions(-)
Title: Store Data About Rows
Description: Tools for keeping track of information, named
"keys", about rows of data frame like objects. This is done by
creating special attribute "keys" which is updated after every change
in rows (subsetting, ordering, etc.). This package is designed to
work tightly with 'dplyr' package.
Author: Evgeni Chasnovski [aut, cre] (<https://orcid.org/0000-0002-1617-4019>)
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between keyholder versions 0.1.5 dated 2020-05-09 and 0.1.6 dated 2021-12-04
DESCRIPTION | 14 MD5 | 28 - NAMESPACE | 1 NEWS.md | 4 R/keyed-df-one-tbl.R | 6 README.md | 48 +- build/vignette.rds |binary inst/doc/introduction.Rmd | 4 inst/doc/introduction.html | 911 ++++++++++++++++++--------------------------- man/keyed-df-one-tbl.Rd | 5 man/keyed-df-two-tbl.Rd | 4 man/keyholder-package.Rd | 2 man/reexports.Rd | 2 man/rename-keys-scoped.Rd | 2 vignettes/introduction.Rmd | 4 15 files changed, 445 insertions(+), 590 deletions(-)
Title: Linking R with the Open-Source 'SAGA-GIS' Software
Description: Provides an R scripting interface to the open-source 'SAGA-GIS'
(System for Automated Geoscientific Analyses Geographical Information
System) software. 'Rsagacmd' dynamically generates R functions for every
'SAGA-GIS' geoprocessing tool based on the user's currently installed
'SAGA-GIS' version. These functions are contained within an S3 object
and are accessed as a named list of libraries and tools. This structure
facilitates an easier scripting experience by organizing the large number
of 'SAGA-GIS' geoprocessing tools (>700) by their respective library.
Interactive scripting can fully take advantage of code autocompletion tools
(e.g. in 'Rstudio'), allowing for each tools syntax to be quickly
recognized. Furthermore, the most common types of spatial data (via the
'raster', 'terra', 'sp', and 'sf' packages) along with non-spatial data are
automatically passed from R to the 'SAGA-GIS' command line tool for
geoprocessing operations, and the results are loaded as the appropriate R
object. Outputs from individual 'SAGA-GIS' tools can also be chained using
pipes from the 'magrittr' and 'dplyr' packages to combine complex
geoprocessing operations together in a single statement. 'SAGA-GIS' is
available under a GPLv2 / LGPLv2 licence from
<https://sourceforge.net/projects/saga-gis/> including Windows x86/x64
binaries. SAGA-GIS is also included in Debian/Ubuntu default software
repositories and is available for macOS using homebrew (<https://brew.sh/>)
from the osgeo/osgeo4mac (<https://github.com/OSGeo/homebrew-osgeo4mac>)
formula tap, as well as being bundled within the 'QGIS' application bundle
for macOS. Rsagacmd has currently been tested on 'SAGA-GIS' versions
from 2.3.1 to 8.0.1 on Windows, Linux and macOS.
Author: Steven Pawley [aut, cre]
Maintainer: Steven Pawley <dr.stevenpawley@gmail.com>
Diff between Rsagacmd versions 0.1.1 dated 2021-07-08 and 0.1.2 dated 2021-12-04
DESCRIPTION | 40 ++- MD5 | 67 ++--- NAMESPACE | 5 NEWS.md | 34 ++ R/Rsagacmd.R | 4 R/check_output_format.R | 70 +++-- R/create_function.R | 11 R/create_tool.R | 45 ++- R/create_tool_overrides.R | 122 +++++---- R/parameters.R | 172 ++++++++----- R/read_output.R | 44 +-- R/run_cmd.R | 24 - R/saga.R | 220 ++++++++--------- R/saga_execute.R | 46 +-- R/saga_search.R | 30 +- R/saga_tools.R |only R/saga_version.R | 8 R/save_object.R | 103 ++++---- R/search_tools.R |only R/tempfiles.R | 4 R/utils.R | 117 --------- README.md | 4 man/Rsagacmd.Rd | 4 man/check_output_format.Rd | 4 man/create_tool.Rd | 5 man/extract_tool.Rd |only man/print.saga_tool.Rd | 8 man/reexports.Rd |only man/saga_gis.Rd | 9 man/search_tools.Rd | 6 man/summarize_tool_params.Rd |only man/tidy.saga_tool.Rd |only man/tile_geoprocessor.Rd | 2 tests/testthat/test-create_tool_overrides.R | 127 +++++----- tests/testthat/test-saga_tools.R |only tests/testthat/test_raster_vector_formats.R | 133 +++++----- tests/testthat/test_saga_environment.R | 203 ++++++++-------- tests/testthat/test_supported_saga_versions.R | 326 +++++++++++--------------- 38 files changed, 993 insertions(+), 1004 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut, cre],
Adam Banker [aut],
Amazon.com, Inc. [cph]
Maintainer: David Kretch <david.kretch@gmail.com>
Diff between paws.common versions 0.3.14 dated 2021-10-24 and 0.3.15 dated 2021-12-04
DESCRIPTION | 25 +++++++++---------- MD5 | 15 ++++++----- NEWS.md | 6 ++++ R/credential_providers.R | 43 +++++++++++++++++++++++++++++++++ R/credential_sso.R |only R/credentials.R | 3 ++ R/handlers_rest.R | 2 - R/iniutil.R | 6 +++- tests/testthat/test_handlers_restxml.R | 18 +++++++++++++ 9 files changed, 97 insertions(+), 21 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
V.A. Traag [ctb],
Gábor Csárdi [ctb],
Tamás Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.0.0 dated 2021-11-19 and 1.0.1 dated 2021-12-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- README.md | 42 +++++++++++++++++++++++++++++++++++++++++- src/Makevars | 6 +++--- 4 files changed, 51 insertions(+), 11 deletions(-)
Title: The Time Series Modeling Companion to 'healthyR'
Description: Hospital time series data analysis workflow tools, modeling, and automations.
This library provides many useful tools to review common administrative time
series hospital data. Some of these include average length of stay, and
readmission rates. The aim is to provide a simple and consistent verb
framework that takes the guesswork out of everything.
Author: Steven Sanderson [aut, cre],
Steven Sanderson [cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.ts versions 0.1.5 dated 2021-11-10 and 0.1.6 dated 2021-12-04
DESCRIPTION | 8 - MD5 | 57 ++++++--- NAMESPACE | 19 +++ NEWS.md | 23 +++ R/00_global_variables.R | 2 R/augment-ts-acceleration.R |only R/augment-ts-velocity.R |only R/helper-model-extraction.R | 15 ++ R/step-ts-acceleration.R |only R/step-ts-velocity.R |only R/ts-ma-plt.R | 2 R/ts-model-compare.R |only R/ts-sma-plot.R | 13 +- R/ts-vva-plot.R |only R/vec-ts-acceleration.R |only R/vec-ts-velocity.R |only R/zzz.R | 110 ++++++++++++++++++ README.md | 16 +- inst/doc/auto-model-tune.html | 87 +++++++------- inst/doc/getting-started.html | 26 ++-- inst/doc/using-tidy-fft.html | 16 +- man/calibrate_and_plot.Rd | 1 man/figures/README-ts_random_walk_ggplot_layers-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/model_extraction_helper.Rd | 2 man/required_pkgs.healthyR.ts.Rd |only man/step_ts_acceleration.Rd |only man/step_ts_velocity.Rd |only man/ts_acceleration_augment.Rd |only man/ts_acceleration_vec.Rd |only man/ts_info_tbl.Rd | 1 man/ts_ma_plot.Rd | 2 man/ts_model_compare.Rd |only man/ts_sma_plot.Rd | 7 - man/ts_to_tbl.Rd | 3 man/ts_velocity_augment.Rd |only man/ts_velocity_vec.Rd |only man/ts_vva_plot.Rd |only 38 files changed, 302 insertions(+), 108 deletions(-)
Title: Analyze, Summarize, and Visualize Daily Streamflow Data
Description: The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various
functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics
and metrics, and compute annual trending and volume frequency analyses. It features useful function arguments
for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly
from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Author: Jon Goetz [aut, cre] (<https://orcid.org/0000-0002-4993-1119>),
Carl James Schwarz [aut],
Robin Pike [ctb],
Province of British Columbia [cph]
Maintainer: Jon Goetz <jon.goetz@gov.bc.ca>
Diff between fasstr versions 0.3.3 dated 2021-10-21 and 0.4.0 dated 2021-12-04
DESCRIPTION | 6 MD5 | 164 +++++++++++----------- NEWS.md | 44 +++++- R/add_basin_area.R | 26 +-- R/add_cumulative_volume.R | 11 + R/add_cumulative_yield.R | 11 + R/calc_all_annual_stats.R | 48 +++++- R/calc_annual_cumulative_stats.R | 7 R/calc_annual_flow_timing.R | 7 R/calc_annual_lowflows.R | 10 - R/calc_annual_outside_normal.R | 1 R/calc_annual_peaks.R | 8 - R/calc_annual_stats.R | 18 +- R/calc_daily_cumulative_stats.R | 21 ++ R/calc_monthly_cumulative_stats.R | 14 + R/calc_monthly_stats.R | 12 - R/compute_annual_frequencies.R | 26 +-- R/compute_annual_trends.R | 10 + R/compute_frequency_quantile.R | 6 R/compute_full_analysis.R | 101 ++++++++++--- R/plot_annual_cumulative_stats.R | 18 +- R/plot_annual_flow_timing.R | 5 R/plot_annual_lowflows.R | 119 ++++++++-------- R/plot_annual_means.R | 47 +++--- R/plot_annual_stats.R | 71 +++++---- R/plot_daily_cumulative_stats.R | 12 + R/plot_daily_stats.R | 29 ++-- R/plot_flow_data.R | 7 R/plot_flow_duration.R | 7 R/plot_longterm_daily_stats.R | 45 ++++-- R/plot_longterm_monthly_stats.R | 28 +++ R/plot_monthly_cumulative_stats.R | 10 - R/plot_monthly_stats.R | 81 +++++------ R/screen_flow_data.R | 2 R/utils.R | 26 +++ R/write_full_analysis.R | 172 ++++++++++++++++------- R/zzz.R | 3 build/vignette.rds |binary inst/doc/fasstr.Rmd | 4 inst/doc/fasstr.html | 4 inst/doc/fasstr_trending_analysis.R | 6 inst/doc/fasstr_trending_analysis.Rmd | 14 + inst/doc/fasstr_trending_analysis.html | 18 +- inst/doc/fasstr_under_the_hood.Rmd | 6 inst/doc/fasstr_under_the_hood.html | 6 inst/doc/fasstr_users_guide.R | 14 + inst/doc/fasstr_users_guide.Rmd | 35 +++- inst/doc/fasstr_users_guide.html | 239 ++++++++++++++++----------------- man/add_cumulative_volume.Rd | 6 man/add_cumulative_yield.Rd | 6 man/calc_all_annual_stats.Rd | 20 ++ man/calc_annual_cumulative_stats.Rd | 2 man/calc_annual_flow_timing.Rd | 4 man/calc_annual_lowflows.Rd | 8 - man/calc_annual_peaks.Rd | 8 - man/calc_annual_stats.Rd | 8 - man/calc_daily_cumulative_stats.Rd | 4 man/calc_monthly_cumulative_stats.Rd | 4 man/calc_monthly_stats.Rd | 8 - man/compute_annual_frequencies.Rd | 10 + man/compute_annual_trends.Rd | 18 ++ man/compute_frequency_analysis.Rd | 2 man/compute_frequency_quantile.Rd | 8 - man/compute_full_analysis.Rd | 18 ++ man/compute_hydat_peak_frequencies.Rd | 2 man/fasstr-package.Rd | 2 man/plot_annual_cumulative_stats.Rd | 4 man/plot_annual_flow_timing.Rd | 4 man/plot_annual_lowflows.Rd | 6 man/plot_annual_means.Rd | 6 man/plot_annual_stats.Rd | 6 man/plot_daily_cumulative_stats.Rd | 4 man/plot_flow_data.Rd | 4 man/plot_longterm_daily_stats.Rd | 4 man/plot_longterm_monthly_stats.Rd | 4 man/plot_monthly_cumulative_stats.Rd | 4 man/plot_monthly_stats.Rd | 6 man/screen_flow_data.Rd | 2 man/write_full_analysis.Rd | 18 ++ vignettes/fasstr.Rmd | 4 vignettes/fasstr_trending_analysis.Rmd | 14 + vignettes/fasstr_under_the_hood.Rmd | 6 vignettes/fasstr_users_guide.Rmd | 35 +++- 83 files changed, 1238 insertions(+), 610 deletions(-)
Title: Statistics About Bytes Contained in a File as a Circle Plot
Description: Shows statistics about bytes contained in a file
as a circle graph of deviations from mean in sigma increments.
The function can be useful for statistically analyze the content of files
in a glimpse: text files are shown as a green centered crown, compressed
and encrypted files should be shown as equally distributed variations with
a very low CV (sigma/mean), and other types of files can be classified between
these two categories depending on their text vs binary content, which can be
useful to quickly determine how information is stored inside them (databases,
multimedia files, etc).
Author: Roberto S. Galende [aut, cre]
Maintainer: Roberto S. Galende <roberto.s.galende@gmail.com>
Diff between bytescircle versions 1.1.1 dated 2021-11-21 and 1.1.2 dated 2021-12-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/bytescircle.pdf |binary src/registerDynamicSymbol.c | 2 +- 4 files changed, 7 insertions(+), 7 deletions(-)
Title: A New Age-Period-Cohort Model for Describing and Investigating
Inter-Cohort Differences and Life Course Dynamics
Description: It implemented Age-Period-Interaction Model (APC-I Model) proposed in the paper of Liying Luo and James S. Hodges in 2019. A new age-period-cohort model for describing and investigating inter-cohort differences and life course dynamics.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between APCI versions 1.0.3 dated 2021-10-21 and 1.0.4 dated 2021-12-04
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++++++--- R/temp6_model.R | 4 ++-- data/blackmen.rda |only data/blackwomen.rda |only data/whitemen.rda |only data/whitewomen.rda |only man/blackmen.Rd |only man/blackwomen.Rd |only man/whitemen.Rd |only man/whitewomen.Rd |only tests/1_tests.R | 16 ++++++++++++++-- tests/Rplots.pdf |only 13 files changed, 31 insertions(+), 10 deletions(-)