Title: Color Calculations with Emphasis on Spectral Data
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners.
Build complex systems from simpler parts using a spectral product algebra. For light sources,
compute CCT, CRI, and SSI. For object colors, compute optimal colors and Logvinenko coordinates.
Work with the standard CIE illuminants and color matching functions, and read spectra from
text files, including CGATS files. Estimate a spectrum from its response. A user guide and 9 vignettes are included.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between colorSpec versions 1.2-1 dated 2020-04-01 and 1.3-0 dated 2021-12-19
DESCRIPTION | 8 MD5 | 86 ++--- NEWS.md | 4 R/colorSpec.R | 23 + R/colorSpec.read.R | 23 + R/zonogon.R | 2 build/vignette.rds |binary inst/doc/blueflame.pdf |binary inst/doc/blueflame.rnw | 21 - inst/doc/colorSpec-guide.html | 616 ++++++++++++++++++++++++++++------------ inst/doc/convexity.pdf |binary inst/doc/convexity.rnw | 28 - inst/doc/emulation.pdf |binary inst/doc/emulation.rnw | 20 - inst/doc/gallery.pdf |binary inst/doc/gallery.rnw | 19 - inst/doc/inversion.pdf |binary inst/doc/inversion.rnw | 23 - inst/doc/lens-aging.pdf |binary inst/doc/lens-aging.rnw | 17 - inst/doc/optimals.pdf |binary inst/doc/optimals.rnw | 17 - inst/doc/phenolred.html | 498 ++++++++++++++++++++++++-------- inst/doc/photoncounting.html | 416 +++++++++++++++++++++------ man/F96T12.Rd | 2 man/HigherPasserines.Rd | 2 man/Hoya.Rd | 2 man/actinometric.Rd | 2 man/computeCRI.Rd | 2 man/displayRGB.Rd | 2 man/lightResponsivitySpectra.Rd | 2 man/logging.Rd | 2 man/product.Rd | 2 man/radiometric.Rd | 2 man/standardRGB.Rd | 6 vignettes/bibliography.bib | 8 vignettes/blueflame.bib | 12 vignettes/blueflame.rnw | 21 - vignettes/convexity.rnw | 28 - vignettes/emulation.rnw | 20 - vignettes/gallery.rnw | 19 - vignettes/inversion.rnw | 23 - vignettes/lens-aging.rnw | 17 - vignettes/optimals.rnw | 17 - 44 files changed, 1438 insertions(+), 574 deletions(-)
Title: Templated Reporting Workflows in Word and PowerPoint
Description: Automated reporting in Word and PowerPoint can require customization for each organizational template. This package works around this by adding standard reporting functions and an abstraction layer to facilitate automated reporting workflows that can be replicated across different organizational templates.
Author: John Harrold [aut, cre] (<https://orcid.org/0000-0003-2052-4373>),
Bryan Smith [aut]
Maintainer: John Harrold <john.m.harrold@gmail.com>
Diff between onbrand versions 1.0.1 dated 2021-09-02 and 1.0.2 dated 2021-12-19
DESCRIPTION | 9 MD5 | 56 - NAMESPACE | 2 NEWS.md | 62 ++ R/add_pptx_ph_content.R | 2 R/md_to_officer.R | 86 ++- R/md_to_oo.R | 3 R/read_template.R | 95 +++ R/report_add_doc_content.R | 512 +++++++++++------- R/report_add_slide.R | 12 R/save_report.R | 69 ++ R/set_officer_object.R | 4 R/template_details.R | 13 R/view_layout.R | 16 README.md | 10 build/vignette.rds |binary inst/doc/Creating_Templated_Office_Workflows.R | 54 + inst/doc/Creating_Templated_Office_Workflows.Rmd | 171 ++++-- inst/doc/Creating_Templated_Office_Workflows.html | 625 ++++++++++++---------- inst/doc/Custom_Office_Templates.Rmd | 165 +++-- inst/doc/Custom_Office_Templates.html | 143 +++-- inst/examples/example.yaml | 35 - inst/templates/report.docx |binary inst/templates/report.yaml | 36 + man/md_to_officer.Rd | 1 man/report_add_doc_content.Rd | 46 + vignettes/Creating_Templated_Office_Workflows.Rmd | 171 ++++-- vignettes/Custom_Office_Templates.Rmd | 165 +++-- vignettes/doc_workflow_output.png |binary 29 files changed, 1755 insertions(+), 808 deletions(-)
Title: Event Study Analysis
Description: Perform Event Studies from through our <https://EventStudyTools.com> Application Programming Interface, parse the results, visualize it, and / or use the results in further analysis.
Author: Dr. Simon Mueller
Maintainer: Dr. Simon Mueller <simon.mueller@muon-stat.com>
Diff between EventStudy versions 0.36 dated 2019-03-14 and 0.37 dated 2021-12-19
DESCRIPTION | 16 MD5 | 87 - NEWS.md | 7 R/AVCApplicationInput.R | 2 R/AVyCApplicationInput.R | 2 R/ArcApplicationInput.R | 2 R/EventStudy.R | 3 R/EventStudyAPI.R | 20 R/EventStudyAddin.R | 2 R/ResultParser.R | 27 R/estPlots.R | 29 R/requestHandling.R | 19 build/vignette.rds |binary inst/doc/addin_eventstudy.R | 2 inst/doc/addin_eventstudy.Rmd | 2 inst/doc/addin_eventstudy.html | 1456 ++--------------------------- inst/doc/howto_eventstudy.R | 35 inst/doc/howto_eventstudy.Rmd | 17 inst/doc/howto_eventstudy.html | 1679 ++++----------------------------- inst/doc/introduction_eventstudy.R | 24 inst/doc/introduction_eventstudy.Rmd | 2 inst/doc/introduction_eventstudy.html | 1689 ++++------------------------------ inst/doc/parameters_eventstudy.R | 34 inst/doc/parameters_eventstudy.html | 1550 +++---------------------------- man/ARCApplicationInput.Rd | 108 ++ man/AVCApplicationInput.Rd | 109 ++ man/AVyCApplicationInput.Rd | 109 ++ man/ApplicationInputInterface.Rd | 75 + man/EventStudy.Rd | 4 man/EventStudyAPI.Rd | 192 +++ man/EventStudyAddin.Rd | 2 man/EventStudyApplicationInput.Rd | 54 - man/ResultParser.Rd | 150 ++- man/aarPlot.Rd | 16 man/arPlot.Rd | 16 man/checkESTAPIError.Rd | 6 man/checkFiles.Rd | 7 man/doHttrRequest.Rd | 11 man/pointwiseCARPlot.Rd | 11 man/reexports.Rd | 2 man/retryRequest.Rd | 2 vignettes/DieselGate.png |only vignettes/addin_eventstudy.Rmd | 2 vignettes/howto_eventstudy.Rmd | 17 vignettes/introduction_eventstudy.Rmd | 2 45 files changed, 1682 insertions(+), 5919 deletions(-)
Title: Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Description: The universal storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.10.1 dated 2021-11-26 and 0.10.2 dated 2021-12-19
DESCRIPTION | 6 MD5 | 85 +++++----- NAMESPACE | 1 NEWS.md | 23 ++ R/Array.R | 26 +-- R/ArraySchema.R | 32 ++-- R/ArrowIO.R | 11 - R/Attribute.R | 39 +--- R/Config.R | 59 ++----- R/Ctx.R | 12 + R/DataFrame.R | 5 R/DenseArray.R | 20 +- R/Dim.R | 19 -- R/Domain.R | 22 +- R/Filter.R | 18 +- R/FilterList.R | 13 - R/FragmentInfo.R | 39 ++++ R/Matrix.R | 5 R/Metadata.R | 88 ++--------- R/Object.R | 51 ++---- R/Query.R | 135 +++++++++-------- R/QueryCondition.R | 20 +- R/RcppExports.R | 15 + R/SparseArray.R | 21 -- R/SparseMatrix.R | 7 R/Stats.R | 10 - R/TileDBArray.R | 54 +++--- R/Utils.R | 32 ++-- R/VFS.R | 103 ++++++------ R/Version.R | 11 - inst/doc/documentation.html | 17 +- inst/tinytest/test_fragmentinfo.R | 2 inst/tinytest/test_misc.R | 6 man/tiledb_datatype_R_type.Rd |only man/tiledb_error_message.Rd | 2 man/tiledb_filter_list_set_max_chunk_size.Rd | 2 man/tiledb_fragment_info_get_non_empty_domain_index.Rd | 2 man/tiledb_query_alloc_buffer_ptr_char.Rd | 4 man/tiledb_query_get_range_num.Rd | 2 src/RcppExports.cpp | 8 - src/libtiledb.cpp | 15 + src/shmem.cpp | 1 tools/fetchTileDBLib.R | 2 tools/tiledbVersion.txt | 4 44 files changed, 522 insertions(+), 527 deletions(-)
Title: R Interface to Stan
Description: User-facing R functions are provided to parse, compile, test,
estimate, and analyze Stan models by accessing the header-only Stan library
provided by the 'StanHeaders' package. The Stan project develops a probabilistic
programming language that implements full Bayesian statistical inference
via Markov Chain Monte Carlo, rough Bayesian inference via 'variational'
approximation, and (optionally penalized) maximum likelihood estimation via
optimization. In all three cases, automatic differentiation is used to quickly
and accurately evaluate gradients without burdening the user with the need to
derive the partial derivatives.
Author: Jiqiang Guo [aut],
Jonah Gabry [aut],
Ben Goodrich [cre, aut],
Sebastian Weber [aut],
Daniel Lee [ctb],
Krzysztof Sakrejda [ctb],
Modrak Martin [ctb],
Trustees of Columbia University [cph],
Oleg Sklyar [cph] (R/cxxfunplus.R),
The R Core Team [cph] (R/pairs.R, R/dynGet.R),
Jens Oehlschlaegel-Akiyoshi [cph] (R/pairs.R),
John Maddock [cph] (gamma.hpp),
Paul Bristow [cph] (gamma.hpp),
Nikhar Agrawal [cph] (gamma.hpp),
Christopher Kormanyos [cph] (gamma.hpp),
Bronder Steve [ctb]
Maintainer: Ben Goodrich <benjamin.goodrich@columbia.edu>
Diff between rstan versions 2.21.2 dated 2020-07-27 and 2.21.3 dated 2021-12-19
DESCRIPTION | 16 MD5 | 107 +-- NAMESPACE | 39 - R/SBC.R | 18 R/check_hmc_diagnostics.R | 12 R/cxxfunplus.R | 115 ++- R/expose_stan_functions.R | 23 R/extract_sparse_parts.R | 2 R/makefile_op.R | 349 +++++------- R/misc.R | 9 R/monitor.R | 18 R/options.R | 98 +-- R/plugin.R | 3 R/stan_csv.R | 48 - R/stanc.R | 96 --- R/stanmodel-class.R | 6 R/zzz.R | 15 build/vignette.rds |binary inst/CITATION | 4 inst/doc/SBC.html | 76 ++ inst/doc/external.R | 4 inst/doc/external.Rmd | 2 inst/doc/external.html | 102 +++ inst/doc/rstan.Rmd | 14 inst/doc/rstan.bib | 8 inst/doc/rstan.html | 226 +++++-- inst/doc/stanfit-objects.html | 314 ++++++---- man/check_hmc_diagnostics.Rd | 10 man/lookup.Rd | 4 man/monitor.Rd | 4 man/nlist.Rd |only man/rstan.Rd | 20 man/sbc.Rd | 4 man/sflist2stanfit.Rd | 2 man/stan.Rd | 18 man/stan_demo.Rd | 2 man/stan_model.Rd | 4 man/stan_plot_diagnostics.Rd | 2 man/stan_rdump.Rd | 4 man/stan_version.Rd | 2 man/stanc.Rd | 4 man/stanfit-class.Rd | 2 man/stanfit-method-logprob.Rd | 2 man/stanfit-method-loo-moment-match.Rd | 2 man/stanfit-method-loo.Rd | 15 man/stanmodel-method-vb.Rd | 4 src/Makevars | 7 src/Makevars.win | 4 src/stan/analyze/mcmc/compute_effective_sample_size.hpp | 8 src/stan/analyze/mcmc/compute_potential_scale_reduction.hpp | 8 src/stan/analyze/mcmc/split_chains.hpp | 4 src/stan_fit.cpp | 7 vignettes/external.Rmd | 2 vignettes/rstan.Rmd | 14 vignettes/rstan.bib | 8 55 files changed, 1046 insertions(+), 845 deletions(-)
Title: Population Down-Scaling
Description: Areal interpolation of population data obtained
by census surveys. Given a set of source zone polygons such as
census tracts or city blocks alongside with population counts and a
target zone of incogruent yet superimposed polygon features (such as
individual buildings) populR transforms population counts from the
former to the latter using Areal Weighted and Volume Weighted
Interpolation methods.
Author: Marios Batsaris
Maintainer: Marios Batsaris <m.batsaris@aegean.gr>
Diff between populR versions 0.1.2 dated 2021-10-31 and 0.1.3 dated 2021-12-19
populR-0.1.2/populR/R/pp_D.R |only populR-0.1.2/populR/R/pp_a.R |only populR-0.1.2/populR/R/pp_calc.R |only populR-0.1.2/populR/README.md |only populR-0.1.2/populR/man/pp_D.Rd |only populR-0.1.2/populR/man/pp_a.Rd |only populR-0.1.2/populR/man/pp_calc.Rd |only populR-0.1.3/populR/DESCRIPTION | 22 ++-- populR-0.1.3/populR/MD5 | 36 ++---- populR-0.1.3/populR/NAMESPACE | 36 +++--- populR-0.1.3/populR/R/pp_estimate.R | 175 +++++++++++++++++++-------------- populR-0.1.3/populR/R/pp_rmse.R | 121 ++++++++++++---------- populR-0.1.3/populR/R/pp_round.R | 147 ++++++++++++++------------- populR-0.1.3/populR/R/source.R | 4 populR-0.1.3/populR/R/target.R | 5 populR-0.1.3/populR/R/utils.R |only populR-0.1.3/populR/data/source.rda |binary populR-0.1.3/populR/data/target.rda |binary populR-0.1.3/populR/man/pp_estimate.Rd | 112 ++++++++++----------- populR-0.1.3/populR/man/pp_rmse.Rd | 99 +++++++++--------- populR-0.1.3/populR/man/pp_round.Rd | 92 ++++++++--------- populR-0.1.3/populR/man/source.Rd | 48 ++++----- populR-0.1.3/populR/man/target.Rd | 47 ++++---- 23 files changed, 491 insertions(+), 453 deletions(-)
Title: Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2020) <doi:10.1007/s11634-019-00373-8>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations from the GPCM family via the EM/CEM algorithm. Visualisation of the results of such models using generalised pairs plots and the inclusion of an additional noise component is also facilitated. A greedy forward stepwise search algorithm is provided for identifying the optimal model in terms of the number of components, the GPCM covariance parameterisation, and the subsets of gating/expert network covariates.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MoEClust versions 1.4.1 dated 2021-10-12 and 1.4.2 dated 2021-12-19
DESCRIPTION | 8 +-- MD5 | 34 ++++++++-------- R/Functions.R | 100 +++++++++++++++++++++++++++--------------------- R/MoEClust.R | 6 +- R/Plotting_Functions.R | 29 ++++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 11 +++++ inst/doc/MoEClust.html | 4 - man/MoEClust-package.Rd | 4 - man/MoE_clust.Rd | 2 man/MoE_control.Rd | 2 man/MoE_dens.Rd | 3 - man/MoE_estep.Rd | 3 - man/MoE_gpairs.Rd | 4 - man/MoE_mahala.Rd | 4 - man/MoE_stepwise.Rd | 4 - man/aitken.Rd | 18 ++++---- 18 files changed, 135 insertions(+), 101 deletions(-)
Title: Estimating and Testing Intergenerational Social Mobility Effect
Description: Estimate and test inter-generational social mobility effect on an outcome with cross-sectional or longitudinal data.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between MCM versions 0.1.3 dated 2021-09-02 and 0.1.4 dated 2021-12-19
DESCRIPTION | 8 +-- MD5 | 15 +++-- R/mcm.R | 78 ++++++++++++++++++++++++++++- R/mcm_lmer.R | 125 ++++++++++++++++++++++++++++++++++++++++++++---- man/mcm.Rd | 21 +++----- man/mcm_lmer.Rd | 40 ++++++++------- man/sim_datlmer.Rd | 5 + man/sim_moderate_het.Rd | 15 ++--- tests |only 9 files changed, 246 insertions(+), 61 deletions(-)
Title: Circos 2D Track Plot
Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
Author: Hongen Zhang
Maintainer: Hongen Zhang <hzhang.henry@gmail.com>
Diff between RCircos versions 1.2.1 dated 2019-03-12 and 1.2.2 dated 2021-12-19
RCircos-1.2.1/RCircos/build |only RCircos-1.2.2/RCircos/DESCRIPTION | 10 +- RCircos-1.2.2/RCircos/MD5 | 45 ++++------ RCircos-1.2.2/RCircos/R/RCircosPlotDataTracks.R | 18 ++-- RCircos-1.2.2/RCircos/data/RCircos.Gene.Label.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Heatmap.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Histogram.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Line.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Link.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Mouse.Expr.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Polygon.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Rat.Expr.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Ribbon.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Scatter.Data.RData |binary RCircos-1.2.2/RCircos/data/RCircos.Tile.Data.RData |binary RCircos-1.2.2/RCircos/data/UCSC.Baylor.3.4.Rat.cytoBandIdeogram.RData |binary RCircos-1.2.2/RCircos/data/UCSC.HG19.Human.CytoBandIdeogram.RData |binary RCircos-1.2.2/RCircos/data/UCSC.HG38.Human.CytoBandIdeogram.RData |binary RCircos-1.2.2/RCircos/data/UCSC.Mouse.GRCm38.CytoBandIdeogram.RData |binary RCircos-1.2.2/RCircos/inst/CITATION | 2 RCircos-1.2.2/RCircos/inst/doc/RCircos-manual.pdf |binary RCircos-1.2.2/RCircos/inst/doc/Using_RCircos.Rnw | 2 RCircos-1.2.2/RCircos/inst/doc/Using_RCircos.pdf |binary RCircos-1.2.2/RCircos/vignettes/Using_RCircos.Rnw | 2 24 files changed, 40 insertions(+), 39 deletions(-)
Title: Repeated Measurement Models for Discrete Times
Description: Companion R package for the course "Statistical analysis of correlated and repeated measurements for health science researchers"
taught by the section of Biostatistics of the University of Copenhagen.
It implements linear mixed models where the model for the variance-covariance of the residuals is specified via patterns (compound symmetry, unstructured).
Statistical inference for mean, variance, and correlation parameters is performed based on the observed information and a Satterthwaite degrees of freedom.
Normalized residuals are provided to assess model misspecification.
Statistical inference can be performed for arbitrary linear combination(s) of model coefficients.
Predictions can be computed conditional to covariates only or also to outcome values.
Author: Brice Ozenne [aut, cre] (<https://orcid.org/0000-0001-9694-2956>),
Julie Forman [aut] (<https://orcid.org/0000-0001-7368-0869>)
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between LMMstar versions 0.4.0 dated 2021-11-04 and 0.4.3 dated 2021-12-19
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Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2248:ESORWD]2.0.CO;2> and Dorazio and Royle <doi:10.1198/016214505000000015>, respectively.
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spOccupancy versions 0.1.3 dated 2021-11-25 and 0.2.0 dated 2021-12-19
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Title: Isotopic Tracer Analysis Using MCMC
Description: Implements Bayesian models to analyze data from tracer addition
experiments. The implemented method was originally described in the article
"A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from
Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020)
<doi:10.1086/708546>.
Author: Andrés López-Sepulcre [aut] (<https://orcid.org/0000-0001-9708-0788>),
Matthieu Bruneaux [aut, cre] (<https://orcid.org/0000-0001-6997-192X>)
Maintainer: Matthieu Bruneaux <matthieu.bruneaux@gmail.com>
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isotracer-1.1.0/isotracer/vignettes/tutorial-090-post-run-analyses.Rmd | 158 +- isotracer-1.1.0/isotracer/vignettes/tutorial-100-posterior-predictive-checks.Rmd | 19 isotracer-1.1.0/isotracer/vignettes/tutorial-110-derived-parameters.Rmd | 31 isotracer-1.1.0/isotracer/vignettes/tutorial-120-howto-simulations.Rmd | 95 + isotracer-1.1.0/isotracer/vignettes/tutorial-130-parameter-identifiability.Rmd | 55 195 files changed, 3636 insertions(+), 2136 deletions(-)
Title: Collaborative Editing of Rmd (or Rnw) Documents in Google Drive
Description: Collaborative writing and editing of R Markdown (or Sweave) documents. The local .Rmd (or .Rnw) is uploaded as a plain-text file to Google Drive. By taking advantage of the easily readable Markdown (or LaTeX) syntax and the well-known online interface offered by Google Docs, collaborators can easily contribute to the writing and editing process. After integrating all authors’ contributions, the final document can be downloaded and rendered locally.
Author: Emily Kothe [aut] (<https://orcid.org/0000-0003-1210-0554>),
Claudio Zandonella Callegher [aut, cre]
(<https://orcid.org/0000-0001-7721-6318>),
Filippo Gambarota [aut] (<https://orcid.org/0000-0002-6666-1747>),
Janosch Linkersdörfer [aut] (<https://orcid.org/0000-0002-1577-1233>),
Mathew Ling [aut] (<https://orcid.org/0000-0002-0940-2538>)
Maintainer: Claudio Zandonella Callegher <claudiozandonella@gmail.com>
Diff between trackdown versions 1.0.0 dated 2021-08-06 and 1.1.1 dated 2021-12-19
trackdown-1.0.0/trackdown/tests/testthat/test_files/dribble_document_old.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/dribble_example_1.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/dribble_hello_world.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/dribble_output_old.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/dribble_writing_folder.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1.Rmd |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1.Rnw |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1.html |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1.pdf |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1_rmd.txt |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_1_rnw.txt |only trackdown-1.0.0/trackdown/tests/testthat/test_files/example_instructions.txt |only trackdown-1.0.0/trackdown/tests/testthat/test_files/old_eval_file.rda |only trackdown-1.0.0/trackdown/tests/testthat/test_files/restore_example_1.Rmd |only trackdown-1.0.0/trackdown/tests/testthat/test_files/restore_example_1.Rnw |only trackdown-1.0.0/trackdown/tests/vcr_files/temp-changed_example_1.txt |only trackdown-1.0.0/trackdown/tests/vcr_files/temp-unchanged_example_1.txt |only trackdown-1.1.1/trackdown/DESCRIPTION | 9 trackdown-1.1.1/trackdown/MD5 | 180 +- trackdown-1.1.1/trackdown/NAMESPACE | 1 trackdown-1.1.1/trackdown/NEWS.md | 23 trackdown-1.1.1/trackdown/R/features.R |only trackdown-1.1.1/trackdown/R/files_manager.R | 14 trackdown-1.1.1/trackdown/R/trackdown-package.R | 2 trackdown-1.1.1/trackdown/R/utils.R | 50 trackdown-1.1.1/trackdown/R/utils_chunk.R | 224 +- trackdown-1.1.1/trackdown/R/utils_dribble.R | 11 trackdown-1.1.1/trackdown/R/utils_manager.R | 16 trackdown-1.1.1/trackdown/R/utils_namer.R | 14 trackdown-1.1.1/trackdown/README.md | 17 trackdown-1.1.1/trackdown/inst/CITATION | 2 trackdown-1.1.1/trackdown/inst/doc/trackdown-workflow.R | 2 trackdown-1.1.1/trackdown/inst/doc/trackdown-workflow.Rmd | 2 trackdown-1.1.1/trackdown/inst/doc/trackdown-workflow.html | 2 trackdown-1.1.1/trackdown/man/download_file.Rd | 11 trackdown-1.1.1/trackdown/tests/fixtures/create_drive_folder_1.yml | 328 +++ trackdown-1.1.1/trackdown/tests/fixtures/create_drive_folder_2.yml | 51 trackdown-1.1.1/trackdown/tests/fixtures/download_file_test_1.yml | 252 ++ trackdown-1.1.1/trackdown/tests/fixtures/download_file_test_2.yml | 249 ++ trackdown-1.1.1/trackdown/tests/fixtures/evaluate_file_test_1.yml | 275 ++- trackdown-1.1.1/trackdown/tests/fixtures/evaluate_file_test_2.yml | 275 ++- trackdown-1.1.1/trackdown/tests/fixtures/evaluate_file_test_3.yml | 187 +- trackdown-1.1.1/trackdown/tests/fixtures/evaluate_file_test_4.yml | 237 ++ trackdown-1.1.1/trackdown/tests/fixtures/get_dribble_info_1.yml | 30 trackdown-1.1.1/trackdown/tests/fixtures/get_dribble_info_2.yml | 232 ++ trackdown-1.1.1/trackdown/tests/fixtures/get_parent_dribble_2.yml | 176 +- trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_1.yml | 374 +++- trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_2.yml | 233 ++ trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_3.yml | 268 ++- trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_4.yml | 229 ++ trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_5.yml | 244 ++ trackdown-1.1.1/trackdown/tests/fixtures/get_path_dribble_test_6.yml | 175 -- trackdown-1.1.1/trackdown/tests/fixtures/render_file_test_1.yml | 252 ++ trackdown-1.1.1/trackdown/tests/fixtures/update_file_test_1.yml | 187 +- trackdown-1.1.1/trackdown/tests/fixtures/update_file_test_2.yml | 278 ++- trackdown-1.1.1/trackdown/tests/fixtures/update_file_test_3.yml | 584 +++++- trackdown-1.1.1/trackdown/tests/fixtures/update_file_test_4.yml | 549 ++++-- trackdown-1.1.1/trackdown/tests/fixtures/upload_document_test_1.yml | 66 trackdown-1.1.1/trackdown/tests/fixtures/upload_document_test_2.yml | 67 trackdown-1.1.1/trackdown/tests/fixtures/upload_file_test_1.yml | 250 ++ trackdown-1.1.1/trackdown/tests/fixtures/upload_file_test_2.yml | 498 ++++- trackdown-1.1.1/trackdown/tests/fixtures/upload_file_test_3.yml | 498 ++++- trackdown-1.1.1/trackdown/tests/fixtures/upload_output_test_1.yml | 58 trackdown-1.1.1/trackdown/tests/fixtures/upload_output_test_2.yml | 55 trackdown-1.1.1/trackdown/tests/testthat/_snaps/features.md |only trackdown-1.1.1/trackdown/tests/testthat/_snaps/utils.md | 28 trackdown-1.1.1/trackdown/tests/testthat/_snaps/utils_chunk.md | 845 +++++----- trackdown-1.1.1/trackdown/tests/testthat/_snaps/utils_namer.md | 1 trackdown-1.1.1/trackdown/tests/testthat/secrets/secret_credentials |binary trackdown-1.1.1/trackdown/tests/testthat/test-features.R |only trackdown-1.1.1/trackdown/tests/testthat/test-files_manager.R | 143 + trackdown-1.1.1/trackdown/tests/testthat/test-utils.R | 104 - trackdown-1.1.1/trackdown/tests/testthat/test-utils_chunk.R | 308 ++- trackdown-1.1.1/trackdown/tests/testthat/test-utils_dribble.R | 52 trackdown-1.1.1/trackdown/tests/testthat/test-utils_manager.R | 72 trackdown-1.1.1/trackdown/tests/testthat/test-utils_namer.R | 10 trackdown-1.1.1/trackdown/tests/testthat/test_files/features |only trackdown-1.1.1/trackdown/tests/testthat/test_files/files_manager |only trackdown-1.1.1/trackdown/tests/testthat/test_files/utils |only trackdown-1.1.1/trackdown/tests/testthat/test_files/utils_chunk |only trackdown-1.1.1/trackdown/tests/testthat/test_files/utils_manager |only trackdown-1.1.1/trackdown/tests/testthat/test_files/utils_namer |only trackdown-1.1.1/trackdown/tests/vcr_files/temp-example-1-changed.txt |only trackdown-1.1.1/trackdown/tests/vcr_files/temp-example-1-unchanged-render.txt |only trackdown-1.1.1/trackdown/tests/vcr_files/temp-example-1-unchanged.txt |only trackdown-1.1.1/trackdown/vignettes/trackdown-workflow.Rmd | 2 86 files changed, 6797 insertions(+), 2505 deletions(-)
Title: Mail Sender Using 'Sendgrid' Service
Description: Send email using 'Sendgrid' <https://sendgrid.com/>
mail API(v3) <https://docs.sendgrid.com/api-reference/how-to-use-the-sendgrid-v3-api/authentication>.
Author: Chanyub Park [aut, cre] (<https://orcid.org/0000-0001-6474-2570>)
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between sendgridr versions 0.4.2 dated 2021-12-16 and 0.4.3 dated 2021-12-19
sendgridr-0.4.2/sendgridr/R/sysdata.rda |only sendgridr-0.4.2/sendgridr/tests |only sendgridr-0.4.3/sendgridr/DESCRIPTION | 10 sendgridr-0.4.3/sendgridr/MD5 | 25 - sendgridr-0.4.3/sendgridr/NAMESPACE | 83 ++--- sendgridr-0.4.3/sendgridr/NEWS.md | 4 sendgridr-0.4.3/sendgridr/R/dynamic-templates.R | 2 sendgridr-0.4.3/sendgridr/R/send.R | 5 sendgridr-0.4.3/sendgridr/R/sendgridr-package.R | 11 sendgridr-0.4.3/sendgridr/R/set_mail.R | 33 -- sendgridr-0.4.3/sendgridr/R/utils-pipe.R | 28 - sendgridr-0.4.3/sendgridr/README.md | 337 ++++++++++++------------ sendgridr-0.4.3/sendgridr/inst/extdata/test.Rmd | 64 ++-- sendgridr-0.4.3/sendgridr/man/attachments.Rd | 58 ++-- 14 files changed, 326 insertions(+), 334 deletions(-)
Title: Efficient Simulation-Based Power and Sample Size Calculations
for a Broad Class of Late-Stage Clinical Trials
Description: The following modules are included in the package:
Adaptive designs with data-driven sample size or event count re-estimation,
Adaptive designs with data-driven treatment selection,
Adaptive designs with data-driven population selection,
Optimal selection of a futility stopping rule,
Event prediction in event-driven trials,
Adaptive trials with response-adaptive randomization (experimental module),
Traditional trials with multiple objectives (experimental module).
Author: Alex Dmitrienko [aut, cre]
Maintainer: Alex Dmitrienko <admitrienko@mediana.us>
Diff between MedianaDesigner versions 0.6 dated 2021-11-01 and 0.7 dated 2021-12-19
CHANGELOG | 4 DESCRIPTION | 11 +- MD5 | 72 +++++++-------- NAMESPACE | 11 ++ R/ADPopSel.r | 74 ++++++++++++++-- R/ADRand.r | 105 +++++++++++++++++++---- R/ADSSMod.r | 71 ++++++++++++++- R/ADTreatSel.r | 71 ++++++++++++++- R/EventPred.r | 86 +++++++++++++++++- R/FutRule.r | 92 ++++++++++++++++++-- R/MultAdj.r | 172 +++++++++++++++++++++++++++++++++++++ R/RcppExports.R | 78 ++++++++--------- R/common.r | 8 + data/EventPredData.RData |binary man/ADPopSel.Rd | 2 man/ADRand.Rd | 2 man/ADRandExample.Rd | 2 man/ADSSMod.Rd | 2 man/ADTreatSel.Rd | 2 man/EventPred.Rd | 2 man/EventPredExample.Rd | 2 man/FutRule.Rd | 2 man/FutRuleExample1.Rd | 2 man/FutRuleExample2.Rd | 2 man/FutRuleExample3.Rd | 2 man/MedianaDesigner-package.Rd | 4 man/MultAdj.Rd | 2 src/RcppExports.cpp | 5 - src/md.cpp | 12 +- src/medmult.h | 76 ++++++++-------- tests/testthat/test-ADPopSel.r | 103 +++++++++++++--------- tests/testthat/test-ADRand.r | 61 ++++++++----- tests/testthat/test-ADSSMod.r | 64 +++++++++----- tests/testthat/test-ADTreatSel.r | 177 ++++++++++++++++++++++++++++++--------- tests/testthat/test-EventPred.r | 56 +++++++----- tests/testthat/test-FutRule.r | 70 ++++++++++----- tests/testthat/test-MultAdj.r | 139 +++++++++++++++++++++++------- 37 files changed, 1263 insertions(+), 383 deletions(-)
More information about MedianaDesigner at CRAN
Permanent link
Title: Infinite Mixtures of Infinite Factor Analysers and Related
Models
Description: Provides flexible Bayesian estimation of Infinite Mixtures of Infinite Factor Analysers and related models, for nonparametrically clustering high-dimensional data, introduced by Murphy et al. (2020) <doi:10.1214/19-BA1179>. The IMIFA model conducts Bayesian nonparametric model-based clustering with factor analytic covariance structures without recourse to model selection criteria to choose the number of clusters or cluster-specific latent factors, mostly via efficient Gibbs updates. Model-specific diagnostic tools are also provided, as well as many options for plotting results, conducting posterior inference on parameters of interest, posterior predictive checking, and quantifying uncertainty.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Cinzia Viroli [ctb] (<https://orcid.org/0000-0002-3278-5266>),
Isobel Claire Gormley [ctb] (<https://orcid.org/0000-0001-7713-681X>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between IMIFA versions 2.1.7 dated 2021-10-08 and 2.1.8 dated 2021-12-19
DESCRIPTION | 8 - MD5 | 52 +++++----- R/Diagnostics.R | 32 +++--- R/FullConditionals.R | 177 +++++++++++++++++----------------- R/Gibbs_FA.R | 5 R/Gibbs_IFA.R | 61 +++++------- R/Gibbs_IMFA.R | 79 ++++++--------- R/Gibbs_IMIFA.R | 253 ++++++++++++++++++++------------------------------ R/Gibbs_MFA.R | 2 R/Gibbs_MIFA.R | 133 +++++++++++--------------- R/Gibbs_OMFA.R | 2 R/Gibbs_OMIFA.R | 128 +++++++++++-------------- R/IMIFA.R | 6 - R/MainFunction.R | 29 +++-- R/PlottingFunctions.R | 6 - R/SimulateData.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 17 ++- inst/doc/IMIFA.html | 4 man/IMIFA-package.Rd | 6 - man/bnpControl.Rd | 12 +- man/mcmc_IMIFA.Rd | 2 man/mgpControl.Rd | 4 man/post_conf_mat.Rd | 2 man/sim_IMIFA.Rd | 2 27 files changed, 491 insertions(+), 535 deletions(-)
Title: 'Rstudio' Addin for Version Control and Assignment Management
using Git
Description: An 'Rstudio' addin for version control that allows users to clone
repositories, create and delete branches, and sync forks on GitHub, GitLab, etc.
Furthermore, the addin uses the GitLab API to allow instructors to create
forks and merge requests for all students/teams with one click of a button.
Author: Vincent Nijs [aut, cre],
Sanjiv Erat [aut]
Maintainer: Vincent Nijs <vnijs@ucsd.edu>
Diff between gitgadget versions 0.6.4 dated 2021-08-11 and 0.6.6 dated 2021-12-19
DESCRIPTION | 10 +++--- MD5 | 25 ++++++++-------- NAMESPACE | 7 ++++ NEWS.md | 9 +++++ R/aaa.R | 2 + R/git.R | 64 +++++++++++++++++++++++++----------------- R/interactive_testing.R | 4 +- README.md | 6 +-- inst/app/components/collect.R | 6 ++- inst/app/components/create.R | 3 + inst/app/components/intro.R | 8 ++--- inst/app/gitgadget_ui.R | 10 +++--- inst/doc/gitgadget.html | 10 +++--- man/read_ufile.Rd |only 14 files changed, 100 insertions(+), 64 deletions(-)
Title: Retrieval, Analysis and Visualization of Air Traffic Data
Description: Provides functionalities and data structures to retrieve, analyze and visualize aviation
data. It includes a client interface to the 'OpenSky' API <https://opensky-network.org>. It allows
retrieval of flight information, as well as aircraft state vectors.
Author: Rafael Ayala, Daniel Ayala, David Ruiz, Aleix Sellés, Lara Sellés Vidal
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between openSkies versions 1.1.5 dated 2021-10-07 and 1.1.6 dated 2021-12-19
DESCRIPTION | 8 MD5 | 24 NAMESPACE | 3 NEWS | 7 R/openSkies_classDefinitions.R | 65 +- R/openSkies_flightAnalysis.R |only R/openSkies_getStateVectorsFunctions.R | 25 R/openSkies_otherSupportFunctions.R | 37 + R/openSkies_variableDefinitions.R | 8 build/vignette.rds |binary inst/doc/openSkies.html | 1039 +++++++++++++++++++++++++-------- man/findFlightPhases.Rd |only man/openSkiesFlight.Rd | 10 man/openSkiesStateVectorSet.Rd | 15 14 files changed, 970 insertions(+), 271 deletions(-)
Title: Mixtures of Exponential-Distance Models with Covariates
Description: Implements a model-based clustering method for categorical life-course sequences relying on mixtures of exponential-distance models introduced by Murphy et al. (2021) <doi:10.1111/rssa.12712>. A range of flexible precision parameter settings corresponding to weighted generalisations of the Hamming distance metric are considered, along with the potential inclusion of a noise component. Gating covariates can be supplied in order to relate sequences to baseline characteristics. Sampling weights are also accommodated. The models are fitted using the EM algorithm and tools for visualising the results are also provided.
Author: Keefe Murphy [aut, cre] (<https://orcid.org/0000-0002-7709-3159>),
Thomas Brendan Murphy [ctb] (<https://orcid.org/0000-0002-5668-7046>),
Raffaella Piccarreta [ctb],
Isobel Claire Gormley [ctb] (<https://orcid.org/0000-0001-7713-681X>)
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MEDseq versions 1.3.1 dated 2021-10-14 and 1.3.2 dated 2021-12-19
DESCRIPTION | 8 +- MD5 | 44 ++++++++-------- R/Functions.R | 121 ++++++++++++++++++++++++++------------------ R/Hidden_Functions.R | 127 +++++++++++++++++++++++++++-------------------- R/MEDseq.R | 8 +- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 9 +-- inst/NEWS.md | 13 ++++ inst/doc/MEDseq.Rmd | 2 inst/doc/MEDseq.html | 6 +- man/MEDseq-package.Rd | 6 +- man/MEDseq_clustnames.Rd | 2 man/MEDseq_compare.Rd | 2 man/MEDseq_control.Rd | 10 ++- man/MEDseq_fit.Rd | 2 man/MEDseq_meantime.Rd | 2 man/MEDseq_stderr.Rd | 2 man/plot.MEDseq.Rd | 2 man/predict.MEDgating.Rd | 2 man/wKModes.Rd | 18 ++++-- vignettes/MEDseq.Rmd | 2 23 files changed, 228 insertions(+), 162 deletions(-)
Title: Common Mean Vector under Copula Models
Description: Estimate bivariate common mean vector under copula models with known correlation. In the current version, available copulas are the Clayton, Farlie-Gumbel-Morgenstern (FGM), and normal copulas. See Shih et al. (2019) <doi:10.1080/02331888.2019.1581782> and Shih et al. (2021) <under review> for details under the FGM and general copulas, respectively.
Author: Jia-Han Shih
Maintainer: Jia-Han Shih <tommy355097@gmail.com>
Diff between CommonMean.Copula versions 1.0.1 dated 2021-11-02 and 1.0.2 dated 2021-12-19
DESCRIPTION | 8 +++---- MD5 | 10 ++++---- R/CommonMean.Copula.R | 44 ++++++++++++++++++++++++++++++++++++--- build/partial.rdb |binary man/CommonMean.Copula-package.rd | 2 - man/CommonMean.Copula.Rd | 2 - 6 files changed, 52 insertions(+), 14 deletions(-)
More information about CommonMean.Copula at CRAN
Permanent link
Title: The Covid19 San Francisco Dataset
Description: Provides a verity of summary tables of the Covid19 cases in San Francisco. Data source: San Francisco, Department of Public Health - Population Health Division <https://datasf.org/opendata/>.
Author: Rami Krispin [aut, cre]
Maintainer: Rami Krispin <rami.krispin@gmail.com>
Diff between covid19sf versions 0.1.1 dated 2021-07-03 and 0.1.2 dated 2021-12-19
covid19sf-0.1.1/covid19sf/data/covid19sf_age.rda |only covid19sf-0.1.1/covid19sf/data/covid19sf_demo.rda |only covid19sf-0.1.1/covid19sf/data/covid19sf_gender.rda |only covid19sf-0.1.1/covid19sf/data/covid19sf_homeless.rda |only covid19sf-0.1.1/covid19sf/data/covid19sf_summary.rda |only covid19sf-0.1.1/covid19sf/data/datalist |only covid19sf-0.1.1/covid19sf/man/covid19sf_age.Rd |only covid19sf-0.1.1/covid19sf/man/covid19sf_demo.Rd |only covid19sf-0.1.1/covid19sf/man/covid19sf_gender.Rd |only covid19sf-0.1.1/covid19sf/man/covid19sf_homeless.Rd |only covid19sf-0.1.1/covid19sf/man/covid19sf_summary.Rd |only covid19sf-0.1.1/covid19sf/man/figures/age_dist.html |only covid19sf-0.1.1/covid19sf/man/figures/age_dist.png |only covid19sf-0.1.1/covid19sf/man/figures/age_dist1.png |only covid19sf-0.1.1/covid19sf/man/figures/age_dist2.png |only covid19sf-0.1.1/covid19sf/man/figures/age_dist_files |only covid19sf-0.1.1/covid19sf/man/figures/demo_dist.png |only covid19sf-0.1.1/covid19sf/man/figures/test_dist.png |only covid19sf-0.1.2/covid19sf/DESCRIPTION | 8 covid19sf-0.1.2/covid19sf/MD5 | 88 +-- covid19sf-0.1.2/covid19sf/NEWS.md | 12 covid19sf-0.1.2/covid19sf/R/data.R | 249 ++------ covid19sf-0.1.2/covid19sf/R/data_refresh.R | 185 +++--- covid19sf-0.1.2/covid19sf/README.md | 288 +++++++--- covid19sf-0.1.2/covid19sf/build/vignette.rds |binary covid19sf-0.1.2/covid19sf/data/covid19sf_geo.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_hospital.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_hospitalizations.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_population.rda |only covid19sf-0.1.2/covid19sf/data/covid19sf_test_loc.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_tests.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_vaccine_demo.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_vaccine_demo_ts.rda |binary covid19sf-0.1.2/covid19sf/data/covid19sf_vaccine_geo.rda |only covid19sf-0.1.2/covid19sf/inst/doc/data_refresh.html | 246 -------- covid19sf-0.1.2/covid19sf/inst/doc/intro.Rmd | 19 covid19sf-0.1.2/covid19sf/inst/doc/intro.html | 265 --------- covid19sf-0.1.2/covid19sf/man/covid19sf_geo.Rd | 13 covid19sf-0.1.2/covid19sf/man/covid19sf_population.Rd |only covid19sf-0.1.2/covid19sf/man/covid19sf_tests.Rd | 3 covid19sf-0.1.2/covid19sf/man/covid19sf_vaccine_demo.Rd | 3 covid19sf-0.1.2/covid19sf/man/covid19sf_vaccine_demo_ts.Rd | 4 covid19sf-0.1.2/covid19sf/man/covid19sf_vaccine_geo.Rd |only covid19sf-0.1.2/covid19sf/man/figures/README-unnamed-chunk-8-1.png |only covid19sf-0.1.2/covid19sf/man/figures/age_dist1.svg | 2 covid19sf-0.1.2/covid19sf/man/figures/age_dist2.svg | 2 covid19sf-0.1.2/covid19sf/man/figures/demo_dist.svg | 2 covid19sf-0.1.2/covid19sf/man/figures/test_dist.svg | 2 covid19sf-0.1.2/covid19sf/tests/testthat/test_data.R | 60 -- covid19sf-0.1.2/covid19sf/vignettes/intro.Rmd | 19 50 files changed, 507 insertions(+), 963 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] (<https://orcid.org/0000-0003-0645-5666>),
RStudio, PBC [cph],
Christophe Dervieux [ctb] (<https://orcid.org/0000-0003-4474-2498>),
Devon Ryan [ctb] (<https://orcid.org/0000-0002-8549-0971>),
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.35 dated 2021-11-04 and 0.36 dated 2021-12-19
DESCRIPTION | 8 ++++---- MD5 | 16 +++++++++------- NAMESPACE | 2 ++ R/install.R | 24 +++++++++--------------- R/latex.R | 28 +++++++++++++++------------- R/tlmgr.R | 26 +++++++++++++++++++++----- R/utils.R |only man/install_tinytex.Rd | 3 +-- man/tlmgr.Rd | 17 +++++++++++++---- tests/test-travis/test-install.R |only 10 files changed, 74 insertions(+), 50 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-02 1.2
2019-07-05 1.1.1
2019-02-12 1.1.0
2017-10-10 1.0.4
2015-06-25 1.0.0
2015-05-15 0.9.3
2015-05-06 0.9.1
2015-04-12 0.5.2
2015-04-03 0.4.14
2015-04-02 0.4.12
2014-05-05 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-23 0.9.1
2021-11-15 0.9.0
2019-11-21 0.2.2
2019-07-26 0.2.1
2019-07-23 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-16 2.21.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-13 0.1.0.3
2021-09-05 0.1.0.2
2021-06-14 0.1.0.1