Title: Robust Gaussian Stochastic Process Emulation
Description: Robust parameter estimation and prediction of Gaussian stochastic process emulators. It allows for robust parameter estimation and prediction using Gaussian stochastic process emulator. It also implements the parallel partial Gaussian stochastic process emulator for computer model with massive outputs See the reference: Mengyang Gu and Jim Berger, 2016, Annals of Applied Statistics; Mengyang Gu, Xiaojing Wang and Jim Berger, 2018, Annals of Statistics.
Author: Mengyang Gu [aut, cre],
Jesus Palomo [aut],
James Berger [aut]
Maintainer: Mengyang Gu <mengyang@pstat.ucsb.edu>
Diff between RobustGaSP versions 0.6.3 dated 2021-09-02 and 0.6.4 dated 2022-01-04
CHANGELOG | 3 +++ DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/predict.R | 27 ++++++++++++++++++++------- R/structure.R | 4 ++-- build/partial.rdb |binary man/predict.ppgasp.Rd | 3 ++- 7 files changed, 36 insertions(+), 19 deletions(-)
Title: Location Identify Tool
Description: Determine the sea area where the fishing boat operates. The latitude and longitude of geographic coordinates are used to match oceanic areas and economic sea areas. Please refer to Flanders Marine Institute (2020) <doi:10.14284/403>.
Author: shiao chih hao
Maintainer: shiao chih hao <chihhao@ofdc.org.tw>
Diff between oceanic versions 0.1.0 dated 2021-12-07 and 0.1.1 dated 2022-01-04
oceanic-0.1.0/oceanic/R/oceanic.R |only oceanic-0.1.0/oceanic/man/oceanic.Rd |only oceanic-0.1.1/oceanic/DESCRIPTION | 19 ++++++++++--------- oceanic-0.1.1/oceanic/MD5 | 13 +++++++++---- oceanic-0.1.1/oceanic/NAMESPACE | 5 ++++- oceanic-0.1.1/oceanic/R/data.R |only oceanic-0.1.1/oceanic/R/idfeez.R |only oceanic-0.1.1/oceanic/R/idfocean.R |only oceanic-0.1.1/oceanic/data |only oceanic-0.1.1/oceanic/man/eez_rg.Rd |only oceanic-0.1.1/oceanic/man/idfeez.Rd |only oceanic-0.1.1/oceanic/man/idfocean.Rd |only 12 files changed, 23 insertions(+), 14 deletions(-)
Title: Penalized Estimation and Forecasting of Multiple Subject Vector
Autoregressive (multi-VAR) Models
Description: Functions for simulating, estimating and forecasting stationary Vector Autoregressive (VAR) models for multiple subject data using the penalized multi-VAR framework in Fisher, Kim and Pipiras (2020) <arXiv:2007.05052>.
Author: Zachary Fisher [aut, cre],
Younghoon Kim [ctb],
Vladas Pipiras [ctb]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>
Diff between multivar versions 0.0.2 dated 2020-07-14 and 1.0.0 dated 2022-01-04
multivar-0.0.2/multivar/man/fista_sparse.Rd |only multivar-0.0.2/multivar/man/var_forecast.Rd |only multivar-0.0.2/multivar/man/var_sim.Rd |only multivar-1.0.0/multivar/DESCRIPTION | 23 +- multivar-1.0.0/multivar/MD5 | 63 ++++++-- multivar-1.0.0/multivar/NAMESPACE | 15 + multivar-1.0.0/multivar/R/RcppExports.R | 48 +----- multivar-1.0.0/multivar/R/breakup_transition.R |only multivar-1.0.0/multivar/R/cv_multivar.R |only multivar-1.0.0/multivar/R/data.R |only multivar-1.0.0/multivar/R/est_base_weight_mat.R |only multivar-1.0.0/multivar/R/extract_results.R |only multivar-1.0.0/multivar/R/fit_canonical_var.R |only multivar-1.0.0/multivar/R/lambda_grid.R |only multivar-1.0.0/multivar/R/multivar.R |only multivar-1.0.0/multivar/R/multivarObjectClass.R |only multivar-1.0.0/multivar/R/multivar_sim.R |only multivar-1.0.0/multivar/R/plot_results.R |only multivar-1.0.0/multivar/R/plot_sim.R |only multivar-1.0.0/multivar/R/plot_transition_mat.R |only multivar-1.0.0/multivar/R/precompile.R |only multivar-1.0.0/multivar/R/setup_data.R |only multivar-1.0.0/multivar/R/var_forecast.R | 15 - multivar-1.0.0/multivar/R/var_sim.R | 41 +---- multivar-1.0.0/multivar/R/wlasso.R |only multivar-1.0.0/multivar/README.md |only multivar-1.0.0/multivar/build |only multivar-1.0.0/multivar/data |only multivar-1.0.0/multivar/inst |only multivar-1.0.0/multivar/man/canonical.multivar-methods.Rd |only multivar-1.0.0/multivar/man/constructModel.Rd |only multivar-1.0.0/multivar/man/cv.multivar-methods.Rd |only multivar-1.0.0/multivar/man/dat_multivar_sim.Rd |only multivar-1.0.0/multivar/man/multivar-class.Rd |only multivar-1.0.0/multivar/man/multivar-package.Rd | 38 +--- multivar-1.0.0/multivar/man/multivar_sim.Rd |only multivar-1.0.0/multivar/man/plot_results.Rd |only multivar-1.0.0/multivar/man/plot_sim.Rd |only multivar-1.0.0/multivar/man/show-methods.Rd |only multivar-1.0.0/multivar/src/Makevars | 1 multivar-1.0.0/multivar/src/Makevars.win | 1 multivar-1.0.0/multivar/src/RcppExports.cpp | 38 ++++ multivar-1.0.0/multivar/src/multivar.cpp | 108 -------------- multivar-1.0.0/multivar/src/multivar2.cpp |only multivar-1.0.0/multivar/vignettes |only 45 files changed, 152 insertions(+), 239 deletions(-)
Title: Estimating and Testing Intergenerational Social Mobility Effect
Description: Estimate and test inter-generational social mobility effect on an outcome with cross-sectional or longitudinal data.
Author: Jiahui Xu [aut, cre],
Liying Luo [aut]
Maintainer: Jiahui Xu <jpx5053@psu.edu>
Diff between MCM versions 0.1.4 dated 2021-12-19 and 0.1.5 dated 2022-01-04
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/mcm.R | 10 +++++----- man/mcm.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between castor versions 1.7.0 dated 2021-10-25 and 1.7.1 dated 2022-01-04
castor-1.7.0/castor/R/fit_hbd_pdr_and_grid.R |only castor-1.7.1/castor/DESCRIPTION | 8 castor-1.7.1/castor/MD5 | 23 - castor-1.7.1/castor/NAMESPACE | 2 castor-1.7.1/castor/R/auxiliary_routines.R | 216 ++++++++++++++++- castor-1.7.1/castor/R/evaluate_spline.R | 2 castor-1.7.1/castor/R/fit_bm_model.R | 2 castor-1.7.1/castor/R/fit_hbd_pdr_parametric.R | 2 castor-1.7.1/castor/R/fit_hbd_psr_parametric.R |only castor-1.7.1/castor/R/fit_hbds_model_parametric.R | 2 castor-1.7.1/castor/R/fit_mk.R | 4 castor-1.7.1/castor/man/fit_hbd_pdr_parametric.Rd | 9 castor-1.7.1/castor/man/fit_hbd_psr_parametric.Rd |only castor-1.7.1/castor/src/phylogenetics_cpp_routines.cpp | 208 ++++++++-------- 14 files changed, 338 insertions(+), 140 deletions(-)
Title: Ensemble Patch Transform, Visualization and Decomposition
Description: For multiscale analysis, this package carries out ensemble patch transform, its visualization and multiscale decomposition. The detailed procedure is described in Kim et al. (2020), and Oh and Kim (2020). D. Kim, G. Choi, H.-S. Oh, Ensemble patch transformation: a flexible framework for decomposition and filtering of signal, EURASIP Journal on Advances in Signal Processing 30 (2020) 1-27 <doi:10.1186/s13634-020-00690-7>. H.-S. Oh, D. Kim, Image decomposition by bidimensional ensemble patch transform, Pattern Recognition Letters 135 (2020) 173-179 <doi:10.1016/j.patrec.2020.03.029>.
Author: Donghoh Kim [aut, cre],
Hee-Seok Oh [aut],
Guebin Choi [ctb]
Maintainer: Donghoh Kim <donghoh.kim@gmail.com>
Diff between EPT versions 0.7.5 dated 2020-02-01 and 0.7.6 dated 2022-01-04
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- data/LOD.rda |binary data/SolarRadiation.rda |binary man/LOD.Rd | 9 ++++++--- man/eptdecomp2d.Rd | 2 +- 6 files changed, 17 insertions(+), 14 deletions(-)
Title: Analysis of the Nigeria National Data Repository (NDR)
Description: The goal is to simplify routine analysis of the Nigeria National Data Repository (NDR) <https://ndr.shieldnigeriaproject.com> using the PEPFAR Monitoring, Evaluation, and Reporting (MER) indicators (see <https://datim.zendesk.com/hc/en-us/articles/360000084446-MER-Indicator-Reference-Guides>). It is designed to import in to R patient-level line-list downloaded as 'csv' file from the front-end of the NDR.
Author: Stephen Balogun [aut, cre] (<https://orcid.org/0000-0002-9928-3703>),
Scholastica Olanrewaju [ctb],
Oluwaseun Okunuga [ctb],
Temitope Kolade [ctb],
Geraldine Abone [ctb]
Maintainer: Stephen Balogun <stephentaiyebalogun@gmail.com>
Diff between tidyndr versions 0.1.1 dated 2021-10-15 and 0.2.0 dated 2022-01-04
DESCRIPTION | 10 MD5 | 155 NAMESPACE | 9 NEWS.md | 44 R/data-recency.R |only R/data.R | 2 R/disaggregate.R | 407 - R/hts_recent.R |only R/hts_tst_pos.R |only R/read_ndr.R | 168 R/recent_eligible.R |only R/rita_recent.R |only R/rita_result.R |only R/rita_sample.R |only R/rtri_recent.R |only R/summarise_ndr.R | 74 R/summarise_recency.R |only R/summarize_ndr.R | 57 R/summarize_recency.R |only R/tidyndr-package.R | 4 R/tx_appointment.R | 75 R/tx_curr.R | 46 R/tx_ml.R | 273 - R/tx_ml_outcomes.R | 23 R/tx_mmd.R | 68 R/tx_new.R | 62 R/tx_pvls_den.R | 110 R/tx_pvls_num.R | 118 R/tx_regimen.R | 121 R/tx_rtt.R | 204 R/tx_vl_eligible.R | 168 R/tx_vl_unsuppressed.R | 118 R/utils-fy_start.R | 22 R/utils-read_ndr.R | 115 R/utils-summarise_ndr.R | 74 README.md | 253 build/vignette.rds |binary data/ndr_example.rda |binary data/recency_example.rda |only inst/doc/Augmenting-tidyndr.R | 9 inst/doc/Augmenting-tidyndr.Rmd | 9 inst/doc/Augmenting-tidyndr.html | 270 - inst/doc/tidyndr.R | 67 inst/doc/tidyndr.Rmd | 91 inst/doc/tidyndr.html | 539 +- inst/extdata/ndr_example.csv | 8000 +++++++++++-------------------- inst/extdata/recency_example.csv |only man/disaggregate.Rd | 16 man/hts_recent.Rd |only man/hts_tst_pos.Rd |only man/ndr_example.Rd | 2 man/read_ndr.Rd | 83 man/recency_example.Rd |only man/recent_eligible.Rd |only man/rita_recent.Rd |only man/rita_result.Rd |only man/rita_sample.Rd |only man/rtri_recent.Rd |only man/summarise_ndr.Rd | 9 man/summarise_recency.Rd |only man/summarize_ndr.Rd | 11 man/summarize_recency.Rd |only man/tidyndr.Rd | 23 man/tx_appointment.Rd | 30 man/tx_curr.Rd | 18 man/tx_ml.Rd | 22 man/tx_mmd.Rd | 8 man/tx_new.Rd | 24 man/tx_pvls_den.Rd | 12 man/tx_pvls_num.Rd | 12 man/tx_regimen.Rd | 4 man/tx_rtt.Rd | 20 man/tx_vl_eligible.Rd | 18 man/tx_vl_unsuppressed.Rd | 10 tests/testthat/test-disaggregate.R | 38 tests/testthat/test-hts_recent.R |only tests/testthat/test-hts_tst_pos.R |only tests/testthat/test-recent_eligible.R |only tests/testthat/test-rita_recent.R |only tests/testthat/test-rita_result.R |only tests/testthat/test-rita_sample.R |only tests/testthat/test-rtri_recent.R |only tests/testthat/test-summarise_recency.R |only tests/testthat/test-summarize_recency.R |only tests/testthat/test-tx_curr.R | 4 tests/testthat/test-tx_mmd.R | 4 tests/testthat/test-tx_pvls_den.R | 46 tests/testthat/test-tx_pvls_num.R | 48 tests/testthat/test-tx_regimen.R | 46 tests/testthat/test-tx_rtt.R | 4 tests/testthat/test-tx_vl_eligible.R | 2 tests/testthat/test-tx_vl_unsuppressed.R | 48 vignettes/Augmenting-tidyndr.Rmd | 9 vignettes/tidyndr.Rmd | 91 94 files changed, 5704 insertions(+), 6723 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.2.4 dated 2021-12-03 and 2.0.0 dated 2022-01-04
Ternary-1.2.4/Ternary/tests/testthat/_snaps/axis.rotate |only Ternary-1.2.4/Ternary/tests/testthat/test-axis.rotate.R |only Ternary-2.0.0/Ternary/DESCRIPTION | 17 Ternary-2.0.0/Ternary/MD5 | 164 ++- Ternary-2.0.0/Ternary/NAMESPACE | 16 Ternary-2.0.0/Ternary/NEWS.md | 19 Ternary-2.0.0/Ternary/R/Contours.R | 1 Ternary-2.0.0/Ternary/R/Coordinates.R | 41 Ternary-2.0.0/Ternary/R/Holdridge.R |only Ternary-2.0.0/Ternary/R/TernaryPlot.R | 441 +++------- Ternary-2.0.0/Ternary/R/data.R | 50 + Ternary-2.0.0/Ternary/R/dot-TrianglePlot.R |only Ternary-2.0.0/Ternary/R/helpers.R |only Ternary-2.0.0/Ternary/R/shiny.R | 14 Ternary-2.0.0/Ternary/R/zzz.R | 8 Ternary-2.0.0/Ternary/README.md | 12 Ternary-2.0.0/Ternary/build/partial.rdb |binary Ternary-2.0.0/Ternary/build/vignette.rds |binary Ternary-2.0.0/Ternary/data/holdridge.rda |only Ternary-2.0.0/Ternary/data/holdridgeClasses.rda |only Ternary-2.0.0/Ternary/data/holdridgeClassesUp.rda |only Ternary-2.0.0/Ternary/data/holdridgeLifeZones.rda |only Ternary-2.0.0/Ternary/data/holdridgeLifeZonesUp.rda |only Ternary-2.0.0/Ternary/inst/TernaryApp |only Ternary-2.0.0/Ternary/inst/WORDLIST | 15 Ternary-2.0.0/Ternary/inst/doc/Holdridge.R |only Ternary-2.0.0/Ternary/inst/doc/Holdridge.Rmd |only Ternary-2.0.0/Ternary/inst/doc/Holdridge.html |only Ternary-2.0.0/Ternary/inst/doc/Ternary.R | 1 Ternary-2.0.0/Ternary/inst/doc/Ternary.Rmd | 11 Ternary-2.0.0/Ternary/inst/doc/Ternary.html | 17 Ternary-2.0.0/Ternary/inst/doc/interpolation.R | 15 Ternary-2.0.0/Ternary/inst/doc/interpolation.Rmd | 22 Ternary-2.0.0/Ternary/inst/doc/interpolation.html | 16 Ternary-2.0.0/Ternary/inst/doc/new-users.R |only Ternary-2.0.0/Ternary/inst/doc/new-users.Rmd |only Ternary-2.0.0/Ternary/inst/doc/new-users.html |only Ternary-2.0.0/Ternary/man/AddToTernary.Rd | 82 + Ternary-2.0.0/Ternary/man/CoordinatesToXY.Rd | 15 Ternary-2.0.0/Ternary/man/HoldridgeHypsometricCol.Rd |only Ternary-2.0.0/Ternary/man/HoldridgePlot.Rd |only Ternary-2.0.0/Ternary/man/TernaryApp.Rd | 2 Ternary-2.0.0/Ternary/man/TernaryPlot.Rd | 13 Ternary-2.0.0/Ternary/man/XYToTernary.Rd | 6 Ternary-2.0.0/Ternary/man/holdridge.Rd |only Ternary-2.0.0/Ternary/man/holdridgeClasses.Rd |only Ternary-2.0.0/Ternary/tests/figs |only Ternary-2.0.0/Ternary/tests/spelling.R |only Ternary-2.0.0/Ternary/tests/testthat/Rplots.pdf |binary Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/contour-error-handling.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/contours-skiwiff.svg | 240 ++--- Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/contours.svg | 240 ++--- Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/density-contours-2.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/density-contours-3.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/density-contours.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/lo-res-density-contours.svg | 48 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Contours/rgbcolours.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/Holdridge |only Ternary-2.0.0/Ternary/tests/testthat/_snaps/axis-rotate |only Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/axisstyle.svg | 54 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-down-anticlockwise.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-down.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-le-anticlockwise.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-le.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-plot.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-right-anticlockwise.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-right.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-up-anticlockwise.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/blank-up.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/cartesian.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/colours-and-water.svg | 94 +- Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/padding.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/panel-xxst-parameter.svg |only Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/plot-to-ternary-x.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/_snaps/ternary/plot-to-ternary-y.svg | 60 - Ternary-2.0.0/Ternary/tests/testthat/test-Contours.R | 8 Ternary-2.0.0/Ternary/tests/testthat/test-Holdridge.R |only Ternary-2.0.0/Ternary/tests/testthat/test-axis-rotate.R |only Ternary-2.0.0/Ternary/tests/testthat/test-shiny.R |only Ternary-2.0.0/Ternary/tests/testthat/test-ternary.R | 34 Ternary-2.0.0/Ternary/vignettes/Holdridge.Rmd |only Ternary-2.0.0/Ternary/vignettes/Ternary.Rmd | 11 Ternary-2.0.0/Ternary/vignettes/interpolation.Rmd | 22 Ternary-2.0.0/Ternary/vignettes/new-users.Rmd |only 84 files changed, 1524 insertions(+), 1305 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
<doi:10.1111/j.1538-4632.1995.tb00912.x>,
'saddlepoint' approximations ('Tiefelsdorf' 2002)
<doi:10.1111/j.1538-4632.2002.tb01084.x> and exact tests
for global and local 'Moran's I' ('Bivand et al.' 2009)
<doi:10.1016/j.csda.2008.07.021> and 'LOSH' local indicators
of spatial heteroscedasticity ('Ord' and 'Getis')
<doi:10.1007/s00168-011-0492-y>. The implementation of most of
the measures is described in 'Bivand' and 'Wong' (2018)
<doi:10.1007/s11749-018-0599-x>.
From 'spdep' and 'spatialreg' versions >= 1.2-1, the model fitting functions
previously present in this package are defunct in 'spdep' and may be found
in 'spatialreg'.
Author: Roger Bivand [cre, aut] (<https://orcid.org/0000-0003-2392-6140>),
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assunção [ctb],
Olaf Berke [ctb],
Guillaume Blanchet [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stéphane Dray [ctb],
Virgilio Gómez-Rubio [ctb],
Elias Krainski [ctb],
Pierre Legendre [ctb],
Nicholas Lewin-Koh [ctb],
Angela Li [ctb],
Giovanni Millo [ctb],
Werner Mueller [ctb],
Hisaji Ono [ctb],
Josiah Parry [ctb] (<https://orcid.org/0000-0001-9910-865X>),
Pedro Peres-Neto [ctb],
Gianfranco Piras [ctb],
Markus Reder [ctb],
Jeff Sauer [ctb],
Michael Tiefelsdorf [ctb],
René Westerholt [ctb],
Levi Wolf [ctb],
Danlin Yu [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.1-13 dated 2021-12-14 and 1.2-1 dated 2022-01-04
spdep-1.1-13/spdep/R/LR.spsarlm.R |only spdep-1.1-13/spdep/R/ME.R |only spdep-1.1-13/spdep/R/SpatialFiltering.R |only spdep-1.1-13/spdep/R/anova.sarlm.R |only spdep-1.1-13/spdep/R/aple.R |only spdep-1.1-13/spdep/R/aple.mc.R |only spdep-1.1-13/spdep/R/apleplot.R |only spdep-1.1-13/spdep/R/bptest.sarlm.R |only spdep-1.1-13/spdep/R/eigenw.R |only spdep-1.1-13/spdep/R/error.hessian.R |only spdep-1.1-13/spdep/R/error.spsarlm.R |only spdep-1.1-13/spdep/R/impacts.R |only spdep-1.1-13/spdep/R/jacobian.R |only spdep-1.1-13/spdep/R/jacobian_setup.R |only spdep-1.1-13/spdep/R/kpgm_new.R |only spdep-1.1-13/spdep/R/lag.hessian.R |only spdep-1.1-13/spdep/R/lag.spsarlm.R |only spdep-1.1-13/spdep/R/lextrB.R |only spdep-1.1-13/spdep/R/lextrW.R |only spdep-1.1-13/spdep/R/listw2Matrix.R |only spdep-1.1-13/spdep/R/mcmcsamp.R |only spdep-1.1-13/spdep/R/mess.R |only spdep-1.1-13/spdep/R/s2sls.R |only spdep-1.1-13/spdep/R/sacsarlm.R |only spdep-1.1-13/spdep/R/sarlm.R |only spdep-1.1-13/spdep/R/spBreg.R |only spdep-1.1-13/spdep/R/spautolm.R |only spdep-1.1-13/spdep/R/summary.spsarlm.R |only spdep-1.1-13/spdep/inst/doc/nb_igraph.R |only spdep-1.1-13/spdep/inst/doc/nb_igraph.Rmd |only spdep-1.1-13/spdep/inst/doc/nb_igraph.html |only spdep-1.1-13/spdep/man/aple.Rd |only spdep-1.1-13/spdep/man/aple.mc.Rd |only spdep-1.1-13/spdep/man/aple.plot.Rd |only spdep-1.1-13/spdep/man/invIrM.Rd |only spdep-1.1-13/spdep/man/spdep-deprecated.Rd |only spdep-1.1-13/spdep/src/eminmaxC.c |only spdep-1.1-13/spdep/src/listw2Matrix.c |only spdep-1.1-13/spdep/src/ml_sse.c |only spdep-1.1-13/spdep/src/mom_calc.c |only spdep-1.1-13/spdep/vignettes/nb_igraph.Rmd |only spdep-1.2-1/spdep/DESCRIPTION | 44 ++----- spdep-1.2-1/spdep/MD5 | 92 ++++----------- spdep-1.2-1/spdep/NAMESPACE | 167 ----------------------------- spdep-1.2-1/spdep/NEWS.md | 6 - spdep-1.2-1/spdep/R/lee.test.R | 2 spdep-1.2-1/spdep/R/lee_internal.R | 13 +- spdep-1.2-1/spdep/R/listw2sn.R | 36 ------ spdep-1.2-1/spdep/R/moran.exact.R | 6 - spdep-1.2-1/spdep/R/nb2listw.R | 104 ------------------ spdep-1.2-1/spdep/R/nb2mat.R | 97 ---------------- spdep-1.2-1/spdep/build/partial.rdb |binary spdep-1.2-1/spdep/build/vignette.rds |binary spdep-1.2-1/spdep/inst/doc/CO69.R | 15 +- spdep-1.2-1/spdep/inst/doc/CO69.Rmd | 19 ++- spdep-1.2-1/spdep/inst/doc/CO69.html | 18 +-- spdep-1.2-1/spdep/inst/doc/nb.html | 2 spdep-1.2-1/spdep/inst/doc/nb_sf.html | 26 ++-- spdep-1.2-1/spdep/inst/doc/sids.html | 17 +- spdep-1.2-1/spdep/man/compon.Rd | 2 spdep-1.2-1/spdep/man/localmoran.exact.Rd | 2 spdep-1.2-1/spdep/man/localmoran.sad.Rd | 2 spdep-1.2-1/spdep/man/mat2listw.Rd | 10 + spdep-1.2-1/spdep/man/nblag.Rd | 2 spdep-1.2-1/spdep/man/spdep-defunct.Rd |only spdep-1.2-1/spdep/src/init.c | 18 --- spdep-1.2-1/spdep/src/spdep.h | 23 --- spdep-1.2-1/spdep/vignettes/CO69.Rmd | 19 ++- 68 files changed, 133 insertions(+), 609 deletions(-)
Title: Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Description: A toolkit for Commodities 'analytics', risk management and trading professionals. Includes functions for API calls to 'Morningstar Commodities' and 'Genscape'.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 0.1.8 dated 2021-09-21 and 0.1.9 dated 2022-01-04
RTL-0.1.8/RTL/R/stl_decomp.R |only RTL-0.1.8/RTL/man/stl_decomp.Rd |only RTL-0.1.9/RTL/DESCRIPTION | 44 +-- RTL-0.1.9/RTL/LICENSE |only RTL-0.1.9/RTL/MD5 | 251 ++++++++--------- RTL-0.1.9/RTL/NAMESPACE | 8 RTL-0.1.9/RTL/NEWS.md | 21 + RTL-0.1.9/RTL/R/CRReuro.R | 105 ++++--- RTL-0.1.9/RTL/R/bond.R | 62 ++-- RTL-0.1.9/RTL/R/chart_PerfSummary.R | 78 +++-- RTL-0.1.9/RTL/R/chart_eia_sd.R | 115 ++++---- RTL-0.1.9/RTL/R/chart_eia_steo.R | 179 +++++++----- RTL-0.1.9/RTL/R/chart_fwd_curves.R | 68 ++-- RTL-0.1.9/RTL/R/chart_pairs.R | 50 ++- RTL-0.1.9/RTL/R/chart_spreads.R | 82 +++-- RTL-0.1.9/RTL/R/chart_zscore.R | 150 ++++++---- RTL-0.1.9/RTL/R/data.R | 80 ++--- RTL-0.1.9/RTL/R/distdescplot.R | 50 ++- RTL-0.1.9/RTL/R/eia2tidy.R | 64 ++-- RTL-0.1.9/RTL/R/fitOU.R | 34 +- RTL-0.1.9/RTL/R/garch.R | 44 +-- RTL-0.1.9/RTL/R/genscape.R | 196 +++++++------ RTL-0.1.9/RTL/R/getGIS.R | 23 - RTL-0.1.9/RTL/R/globals.R | 30 +- RTL-0.1.9/RTL/R/ir_df_us.R | 43 +-- RTL-0.1.9/RTL/R/morningstar.R | 413 ++++++++++++++++++----------- RTL-0.1.9/RTL/R/npv.R | 41 +- RTL-0.1.9/RTL/R/promptBeta.R | 87 +++--- RTL-0.1.9/RTL/R/refineryLP.R | 50 ++- RTL-0.1.9/RTL/R/returns.R | 44 ++- RTL-0.1.9/RTL/R/rolladjust.R | 68 ++-- RTL-0.1.9/RTL/R/simGBM.R | 65 ++-- RTL-0.1.9/RTL/R/simOU.R | 13 RTL-0.1.9/RTL/R/simOUJ.R | 21 - RTL-0.1.9/RTL/R/swapCOM.R | 50 +-- RTL-0.1.9/RTL/R/swapFutWeight.R | 49 ++- RTL-0.1.9/RTL/R/swapIRS.R | 85 +++-- RTL-0.1.9/RTL/R/swapInfo.R | 88 +++--- RTL-0.1.9/RTL/R/tradeStats.R | 64 ++-- RTL-0.1.9/RTL/README.md | 182 +++++++----- RTL-0.1.9/RTL/data/cancrudeassays.rda |binary RTL-0.1.9/RTL/data/cancrudeassayssum.rda |binary RTL-0.1.9/RTL/data/cancrudeprices.rda |binary RTL-0.1.9/RTL/data/crudeassaysBP.rda |binary RTL-0.1.9/RTL/data/crudeassaysXOM.rda |binary RTL-0.1.9/RTL/data/crudes.rda |binary RTL-0.1.9/RTL/data/dflong.rda |binary RTL-0.1.9/RTL/data/dfwide.rda |binary RTL-0.1.9/RTL/data/eiaStocks.rda |binary RTL-0.1.9/RTL/data/eiaStorageCap.rda |binary RTL-0.1.9/RTL/data/eurodollar.rda |binary RTL-0.1.9/RTL/data/expiry_table.rda |binary RTL-0.1.9/RTL/data/fizdiffs.rda |binary RTL-0.1.9/RTL/data/fxfwd.rda |binary RTL-0.1.9/RTL/data/holidaysOil.rda |binary RTL-0.1.9/RTL/data/planets.rda |binary RTL-0.1.9/RTL/data/spot2futConvergence.rda |binary RTL-0.1.9/RTL/data/spot2futCurve.rda |binary RTL-0.1.9/RTL/data/tickers_eia.rda |binary RTL-0.1.9/RTL/data/tradeCycle.rda |binary RTL-0.1.9/RTL/data/tradeprocess.rda |binary RTL-0.1.9/RTL/data/usSwapCurves.rda |binary RTL-0.1.9/RTL/data/usSwapCurvesPar.rda |binary RTL-0.1.9/RTL/data/usSwapIR.rda |binary RTL-0.1.9/RTL/data/usSwapIRdef.rda |binary RTL-0.1.9/RTL/data/wtiSwap.rda |binary RTL-0.1.9/RTL/man/CRReuro.Rd | 4 RTL-0.1.9/RTL/man/bond.Rd | 8 RTL-0.1.9/RTL/man/cancrudeassays.Rd | 2 RTL-0.1.9/RTL/man/cancrudeassayssum.Rd | 2 RTL-0.1.9/RTL/man/cancrudeprices.Rd | 4 RTL-0.1.9/RTL/man/chart_PerfSummary.Rd | 13 RTL-0.1.9/RTL/man/chart_eia_sd.Rd | 7 RTL-0.1.9/RTL/man/chart_eia_steo.Rd | 7 RTL-0.1.9/RTL/man/chart_fwd_curves.Rd | 18 - RTL-0.1.9/RTL/man/chart_pairs.Rd | 9 RTL-0.1.9/RTL/man/chart_spreads.Rd | 29 +- RTL-0.1.9/RTL/man/chart_zscore.Rd | 14 RTL-0.1.9/RTL/man/crudeassaysBP.Rd | 5 RTL-0.1.9/RTL/man/crudeassaysXOM.Rd | 5 RTL-0.1.9/RTL/man/crudes.Rd | 2 RTL-0.1.9/RTL/man/dflong.Rd | 6 RTL-0.1.9/RTL/man/dfwide.Rd | 6 RTL-0.1.9/RTL/man/distdescplot.Rd | 10 RTL-0.1.9/RTL/man/eia2tidy.Rd | 19 - RTL-0.1.9/RTL/man/eiaStocks.Rd | 2 RTL-0.1.9/RTL/man/eiaStorageCap.Rd | 32 +- RTL-0.1.9/RTL/man/eurodollar.Rd | 4 RTL-0.1.9/RTL/man/expiry_table.Rd | 2 RTL-0.1.9/RTL/man/fitOU.Rd | 4 RTL-0.1.9/RTL/man/fizdiffs.Rd | 2 RTL-0.1.9/RTL/man/fxfwd.Rd | 4 RTL-0.1.9/RTL/man/garch.Rd | 14 RTL-0.1.9/RTL/man/getCurve.Rd | 31 +- RTL-0.1.9/RTL/man/getGIS.Rd | 3 RTL-0.1.9/RTL/man/getGenscapePipeOil.Rd | 13 RTL-0.1.9/RTL/man/getGenscapeStorageOil.Rd | 11 RTL-0.1.9/RTL/man/getIRswapCurve.Rd | 5 RTL-0.1.9/RTL/man/getPrice.Rd | 93 ++++-- RTL-0.1.9/RTL/man/getPrices.Rd | 9 RTL-0.1.9/RTL/man/holidaysOil.Rd | 2 RTL-0.1.9/RTL/man/ir_df_us.Rd | 7 RTL-0.1.9/RTL/man/npv.Rd | 21 - RTL-0.1.9/RTL/man/planets.Rd | 2 RTL-0.1.9/RTL/man/promptBeta.Rd | 20 - RTL-0.1.9/RTL/man/ref.opt.inputs.Rd | 2 RTL-0.1.9/RTL/man/ref.opt.outputs.Rd | 2 RTL-0.1.9/RTL/man/refineryLP.Rd | 4 RTL-0.1.9/RTL/man/returns.Rd | 6 RTL-0.1.9/RTL/man/rolladjust.Rd | 10 RTL-0.1.9/RTL/man/simGBM.Rd | 4 RTL-0.1.9/RTL/man/simOU.Rd | 4 RTL-0.1.9/RTL/man/simOUJ.Rd | 6 RTL-0.1.9/RTL/man/spot2futConvergence.Rd | 4 RTL-0.1.9/RTL/man/spot2futCurve.Rd | 4 RTL-0.1.9/RTL/man/swapCOM.Rd | 17 - RTL-0.1.9/RTL/man/swapFutWeight.Rd | 8 RTL-0.1.9/RTL/man/swapIRS.Rd | 16 - RTL-0.1.9/RTL/man/swapInfo.Rd | 19 - RTL-0.1.9/RTL/man/tickers_eia.Rd | 2 RTL-0.1.9/RTL/man/tradeCycle.Rd | 2 RTL-0.1.9/RTL/man/tradeStats.Rd | 11 RTL-0.1.9/RTL/man/tradeprocess.Rd | 4 RTL-0.1.9/RTL/man/usSwapCurves.Rd | 2 RTL-0.1.9/RTL/man/usSwapCurvesPar.Rd | 2 RTL-0.1.9/RTL/man/usSwapIR.Rd | 2 RTL-0.1.9/RTL/man/usSwapIRdef.Rd | 2 RTL-0.1.9/RTL/man/wtiSwap.Rd | 4 128 files changed, 2135 insertions(+), 1550 deletions(-)
Title: HTTP and WebSocket Server Library
Description: Provides low-level socket and protocol support for handling
HTTP and WebSocket requests directly from within R. It is primarily
intended as a building block for other packages, rather than making it
particularly easy to create complete web applications using httpuv alone.
httpuv is built on top of the libuv and http-parser C libraries, both of
which were developed by Joyent, Inc. (See LICENSE file for libuv and
http-parser license information.)
Author: Joe Cheng [aut],
Winston Chang [aut, cre],
RStudio, PBC [cph],
Hector Corrada Bravo [ctb],
Jeroen Ooms [ctb],
Andrzej Krzemienski [cph] (optional.hpp)
Maintainer: Winston Chang <winston@rstudio.com>
Diff between httpuv versions 1.6.4 dated 2021-12-14 and 1.6.5 dated 2022-01-04
httpuv-1.6.4/httpuv/src/set_invalid_parameter.c |only httpuv-1.6.5/httpuv/DESCRIPTION | 6 ++--- httpuv-1.6.5/httpuv/MD5 | 28 ++++++++++++------------ httpuv-1.6.5/httpuv/NEWS.md | 7 ++++++ httpuv-1.6.5/httpuv/src/Makevars.ucrt |only httpuv-1.6.5/httpuv/src/callbackqueue.cpp | 2 - httpuv-1.6.5/httpuv/src/callbackqueue.h | 2 - httpuv-1.6.5/httpuv/src/http.h | 2 - httpuv-1.6.5/httpuv/src/httprequest.h | 2 - httpuv-1.6.5/httpuv/src/httpresponse.cpp | 2 - httpuv-1.6.5/httpuv/src/httpuv.cpp | 2 - httpuv-1.6.5/httpuv/src/socket.cpp | 2 - httpuv-1.6.5/httpuv/src/socket.h | 2 - httpuv-1.6.5/httpuv/src/thread.h | 2 - httpuv-1.6.5/httpuv/src/uvutil.h | 2 - httpuv-1.6.5/httpuv/src/webapplication.h | 2 - 16 files changed, 35 insertions(+), 28 deletions(-)
Title: Manual Tours, Manual Control of Dynamic Projections of Numeric
Multivariate Data
Description: Data visualization tours animates linear projection
of multivariate data as its basis (ie. orientation) changes. The 'spinifex'
packages generates paths for manual tours by manipulating the contribution of
a single variable at a time Cook & Buja (1997)
<doi:10.1080/10618600.1997.10474754>. Other types of tours, such as grand
(random walk) and guided (optimizing some objective function) are available
in the 'tourr' package Wickham et al. <doi:10.18637/jss.v040.i02>.
'spinifex' builds on 'tourr' and can render tours with 'gganimate' and
'plotly' graphics, and allows for exporting as an .html widget and as an .gif,
respectively. This work is fully discussed in Spyrison & Cook (2020)
<doi:10.32614/RJ-2020-027>.
Author: Nicholas Spyrison [aut, cre] (<https://orcid.org/0000-0002-8417-0212>),
Dianne Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>)
Maintainer: Nicholas Spyrison <spyrison@gmail.com>
Diff between spinifex versions 0.3.1 dated 2021-09-28 and 0.3.2 dated 2022-01-04
spinifex-0.3.1/spinifex/R/2_render.r |only spinifex-0.3.1/spinifex/R/3_visualize.r |only spinifex-0.3.1/spinifex/man/as_history_array.Rd |only spinifex-0.3.1/spinifex/tests/testthat/test-2_render.R |only spinifex-0.3.1/spinifex/tests/testthat/test-3_visualize.r |only spinifex-0.3.2/spinifex/DESCRIPTION | 18 spinifex-0.3.2/spinifex/MD5 | 159 spinifex-0.3.2/spinifex/NAMESPACE | 11 spinifex-0.3.2/spinifex/NEWS.md | 12 spinifex-0.3.2/spinifex/R/0_util.r | 522 +- spinifex-0.3.2/spinifex/R/1_manual_tour.r | 56 spinifex-0.3.2/spinifex/R/2_ggproto_visualize.r | 1943 ++++++---- spinifex-0.3.2/spinifex/R/9_data.r | 21 spinifex-0.3.2/spinifex/R/spinifex-package.r | 68 spinifex-0.3.2/spinifex/R/zDepricated_2_render.r |only spinifex-0.3.2/spinifex/R/zDepricated_3_visualize.r |only spinifex-0.3.2/spinifex/README.md | 75 spinifex-0.3.2/spinifex/build/partial.rdb |binary spinifex-0.3.2/spinifex/build/vignette.rds |binary spinifex-0.3.2/spinifex/inst/WORDLIST | 24 spinifex-0.3.2/spinifex/inst/doc/getting_started_with_spinifex.R | 14 spinifex-0.3.2/spinifex/inst/doc/getting_started_with_spinifex.Rmd | 26 spinifex-0.3.2/spinifex/inst/doc/getting_started_with_spinifex.html | 36 spinifex-0.3.2/spinifex/inst/doc/ggproto_api.R | 31 spinifex-0.3.2/spinifex/inst/doc/ggproto_api.Rmd | 44 spinifex-0.3.2/spinifex/inst/doc/ggproto_api.html | 104 spinifex-0.3.2/spinifex/inst/shiny_apps/radial_tour/app.R | 79 spinifex-0.3.2/spinifex/inst/shiny_apps/radial_tour/ui.R | 4 spinifex-0.3.2/spinifex/man/BreastCancer.Rd | 11 spinifex-0.3.2/spinifex/man/PimaIndiansDiabetes_long.Rd | 2 spinifex-0.3.2/spinifex/man/PimaIndiansDiabetes_wide.Rd | 2 spinifex-0.3.2/spinifex/man/animate_gganimate.Rd | 43 spinifex-0.3.2/spinifex/man/animate_plotly.Rd | 32 spinifex-0.3.2/spinifex/man/append_fixed_y.Rd |only spinifex-0.3.2/spinifex/man/array2df.Rd | 21 spinifex-0.3.2/spinifex/man/basis_guided.Rd | 4 spinifex-0.3.2/spinifex/man/basis_half_circle.Rd | 4 spinifex-0.3.2/spinifex/man/basis_odp.Rd | 4 spinifex-0.3.2/spinifex/man/basis_olda.Rd | 4 spinifex-0.3.2/spinifex/man/basis_onpp.Rd | 4 spinifex-0.3.2/spinifex/man/basis_pca.Rd | 4 spinifex-0.3.2/spinifex/man/create_manip_space.Rd | 8 spinifex-0.3.2/spinifex/man/devMessage.Rd |only spinifex-0.3.2/spinifex/man/dot-bind_elements2df.Rd | 5 spinifex-0.3.2/spinifex/man/dot-init4proto.Rd | 3 spinifex-0.3.2/spinifex/man/dot-lapply_rep_len.Rd | 3 spinifex-0.3.2/spinifex/man/draw_basis.Rd |only spinifex-0.3.2/spinifex/man/facet_wrap_tour.Rd |only spinifex-0.3.2/spinifex/man/filmstrip.Rd | 52 spinifex-0.3.2/spinifex/man/ggtour.Rd | 86 spinifex-0.3.2/spinifex/man/interpolate_manual_tour.Rd | 11 spinifex-0.3.2/spinifex/man/is_orthonormal.Rd | 8 spinifex-0.3.2/spinifex/man/manip_var_of.Rd | 9 spinifex-0.3.2/spinifex/man/manual_tour.Rd | 10 spinifex-0.3.2/spinifex/man/map_absolute.Rd | 4 spinifex-0.3.2/spinifex/man/map_relative.Rd | 14 spinifex-0.3.2/spinifex/man/penguins.Rd | 2 spinifex-0.3.2/spinifex/man/play_manual_tour.Rd | 4 spinifex-0.3.2/spinifex/man/play_tour_path.Rd | 7 spinifex-0.3.2/spinifex/man/proto_basis.Rd | 71 spinifex-0.3.2/spinifex/man/proto_default.Rd | 65 spinifex-0.3.2/spinifex/man/proto_density.Rd | 49 spinifex-0.3.2/spinifex/man/proto_density2d.Rd |only spinifex-0.3.2/spinifex/man/proto_frame_cor2.Rd |only spinifex-0.3.2/spinifex/man/proto_hex.Rd | 46 spinifex-0.3.2/spinifex/man/proto_highlight.Rd | 111 spinifex-0.3.2/spinifex/man/proto_hline0.Rd |only spinifex-0.3.2/spinifex/man/proto_origin.Rd | 52 spinifex-0.3.2/spinifex/man/proto_point.Rd | 68 spinifex-0.3.2/spinifex/man/proto_text.Rd | 51 spinifex-0.3.2/spinifex/man/render_.Rd | 2 spinifex-0.3.2/spinifex/man/render_gganimate.Rd | 2 spinifex-0.3.2/spinifex/man/render_plotly.Rd | 2 spinifex-0.3.2/spinifex/man/rotate_manip_space.Rd | 8 spinifex-0.3.2/spinifex/man/save_history.Rd | 69 spinifex-0.3.2/spinifex/man/scale_colour_discrete.Rd |only spinifex-0.3.2/spinifex/man/spinifex-deprecated.Rd | 6 spinifex-0.3.2/spinifex/man/theme_spinifex.Rd | 4 spinifex-0.3.2/spinifex/man/view_frame.Rd | 4 spinifex-0.3.2/spinifex/man/view_manip_space.Rd | 2 spinifex-0.3.2/spinifex/man/weather.Rd | 2 spinifex-0.3.2/spinifex/man/wine.Rd | 2 spinifex-0.3.2/spinifex/tests/testthat/test-0_util.R | 143 spinifex-0.3.2/spinifex/tests/testthat/test-1_manual_tour.R | 31 spinifex-0.3.2/spinifex/tests/testthat/test-2_ggproto_visualize.r | 200 - spinifex-0.3.2/spinifex/tests/testthat/test-zDepricated_2_render.R |only spinifex-0.3.2/spinifex/tests/testthat/test-zDepricated_3_visualize.r |only spinifex-0.3.2/spinifex/vignettes/getting_started_with_spinifex.Rmd | 26 spinifex-0.3.2/spinifex/vignettes/ggproto_api.Rmd | 44 89 files changed, 2941 insertions(+), 1727 deletions(-)
Title: Database Interface Class
Description: 'R6' class interface for handling relational database connections using 'DBI' package as backend.
The class allows handling of connections to e.g. PostgreSQL, MariaDB and SQLite.
The purpose is having an intuitive object allowing straightforward handling of SQL databases.
Author: Nikolaus Pawlowski [aut, cre, cph]
Maintainer: Nikolaus Pawlowski <niko@fr33.net>
Diff between rocker versions 0.2.1 dated 2021-12-12 and 0.3.0 dated 2022-01-04
rocker-0.2.1/rocker/R/S3.R |only rocker-0.2.1/rocker/R/function.R |only rocker-0.2.1/rocker/R/rocker.R |only rocker-0.2.1/rocker/inst/doc/Insatllation_and_Object.R |only rocker-0.2.1/rocker/inst/doc/Insatllation_and_Object.Rmd |only rocker-0.2.1/rocker/inst/doc/Insatllation_and_Object.html |only rocker-0.2.1/rocker/man/rocker.Rd |only rocker-0.2.1/rocker/vignettes/Insatllation_and_Object.Rmd |only rocker-0.3.0/rocker/DESCRIPTION | 17 - rocker-0.3.0/rocker/MD5 | 128 ++++---- rocker-0.3.0/rocker/NAMESPACE | 37 ++ rocker-0.3.0/rocker/NEWS.md | 16 - rocker-0.3.0/rocker/R/functions-private.R |only rocker-0.3.0/rocker/R/functions-public.R |only rocker-0.3.0/rocker/R/namespace.R | 6 rocker-0.3.0/rocker/R/rocker-R6-class.R |only rocker-0.3.0/rocker/R/rocker-S3-functions.R |only rocker-0.3.0/rocker/R/rocker-package.R |only rocker-0.3.0/rocker/README.md | 192 +++++++++--- rocker-0.3.0/rocker/build/vignette.rds |binary rocker-0.3.0/rocker/inst/doc/DBI_objects_and_functions.html | 22 - rocker-0.3.0/rocker/inst/doc/Database_connections.Rmd | 4 rocker-0.3.0/rocker/inst/doc/Database_connections.html | 4 rocker-0.3.0/rocker/inst/doc/Installation_and_Object.R |only rocker-0.3.0/rocker/inst/doc/Installation_and_Object.Rmd |only rocker-0.3.0/rocker/inst/doc/Installation_and_Object.html |only rocker-0.3.0/rocker/man/appendTable.Rd | 46 ++ rocker-0.3.0/rocker/man/begin.Rd | 46 ++ rocker-0.3.0/rocker/man/canConnect.Rd | 46 ++ rocker-0.3.0/rocker/man/clearResult.Rd | 46 ++ rocker-0.3.0/rocker/man/columnInfo.Rd | 46 ++ rocker-0.3.0/rocker/man/commit.Rd | 46 ++ rocker-0.3.0/rocker/man/connect.Rd | 46 ++ rocker-0.3.0/rocker/man/createTable.Rd | 46 ++ rocker-0.3.0/rocker/man/disconnect.Rd | 46 ++ rocker-0.3.0/rocker/man/execute.Rd | 46 ++ rocker-0.3.0/rocker/man/existsTable.Rd | 46 ++ rocker-0.3.0/rocker/man/fetch.Rd | 46 ++ rocker-0.3.0/rocker/man/fragments/Help.Rmd | 5 rocker-0.3.0/rocker/man/fragments/Object.Rmd | 42 ++ rocker-0.3.0/rocker/man/getInfoCon.Rd | 46 ++ rocker-0.3.0/rocker/man/getInfoDrv.Rd | 46 ++ rocker-0.3.0/rocker/man/getInfoRes.Rd | 46 ++ rocker-0.3.0/rocker/man/getQuery.Rd | 46 ++ rocker-0.3.0/rocker/man/getRowCount.Rd | 46 ++ rocker-0.3.0/rocker/man/getRowsAffected.Rd | 46 ++ rocker-0.3.0/rocker/man/getStatement.Rd | 46 ++ rocker-0.3.0/rocker/man/hasCompleted.Rd | 46 ++ rocker-0.3.0/rocker/man/isValidCon.Rd | 52 +++ rocker-0.3.0/rocker/man/isValidDrv.Rd | 52 +++ rocker-0.3.0/rocker/man/isValidRes.Rd | 52 +++ rocker-0.3.0/rocker/man/listFields.Rd | 46 ++ rocker-0.3.0/rocker/man/listObjects.Rd | 46 ++ rocker-0.3.0/rocker/man/listTables.Rd | 46 ++ rocker-0.3.0/rocker/man/newDB.Rd | 10 rocker-0.3.0/rocker/man/readTable.Rd | 46 ++ rocker-0.3.0/rocker/man/removeTable.Rd | 46 ++ rocker-0.3.0/rocker/man/rocker-R6-class.Rd |only rocker-0.3.0/rocker/man/rocker-README.Rd |only rocker-0.3.0/rocker/man/rocker-S3-functions.Rd |only rocker-0.3.0/rocker/man/rocker-package.Rd |only rocker-0.3.0/rocker/man/rollback.Rd | 46 ++ rocker-0.3.0/rocker/man/sendQuery.Rd | 46 ++ rocker-0.3.0/rocker/man/sendStatement.Rd | 46 ++ rocker-0.3.0/rocker/man/setupDriver.Rd | 52 +++ rocker-0.3.0/rocker/man/setupMariaDB.Rd | 54 +++ rocker-0.3.0/rocker/man/setupPostgreSQL.Rd | 54 +++ rocker-0.3.0/rocker/man/setupSQLite.Rd | 52 +++ rocker-0.3.0/rocker/man/unloadDriver.Rd | 46 ++ rocker-0.3.0/rocker/man/validateCon.Rd |only rocker-0.3.0/rocker/man/writeTable.Rd | 46 ++ rocker-0.3.0/rocker/tests |only rocker-0.3.0/rocker/vignettes/Database_connections.Rmd | 4 rocker-0.3.0/rocker/vignettes/Installation_and_Object.Rmd |only 74 files changed, 2043 insertions(+), 192 deletions(-)
Title: Processing Pipeline for 'SamBada' from Pre- To Post-Processing
Description: Processing pipeline for 'SamBada' from pre- to post-processing.
'SamBada' is a landscape genomic software designed to run univariate or multivariate logistic regression between the presence of a genotype and one or several environmental variables. See Stucki (2017) <doi:10.1111/1755-0998.12629> and <https://github.com/Sylvie/sambada>.
The package provides functions that can be classified into four categories:
1) Install 'SamBada'
2) Preprocessing (prepare genomic file into standards compatible with 'SamBada' and apply quality-control; retrieve environmental conditions at sampling location; prepare environmental file including removal of correlated variables and computation of population structure)
3) Processing (run 'SamBada' on multiple cores using 'Supervision')
4) Post-processing (calculate p-values and q-values, produce interactive Manhattan plots and query 'Ensembl' database, produce maps).
Author: Solange Duruz, Sylvie Stucki, Oliver Selmoni, Elia Vajana
Maintainer: Solange Duruz <solange.duruz@alumni.epfl.ch>
Diff between R.SamBada versions 0.1.2 dated 2019-11-25 and 0.1.3 dated 2022-01-04
R.SamBada-0.1.2/R.SamBada/inst/extdata/uganda-subset-mol-Out-0.csv |only R.SamBada-0.1.2/R.SamBada/inst/extdata/uganda-subset-mol-Out-1.csv |only R.SamBada-0.1.2/R.SamBada/inst/extdata/uganda-subset-mol-log.csv |only R.SamBada-0.1.2/R.SamBada/inst/extdata/uganda-subset-mol-storey-dimMax1.csv |only R.SamBada-0.1.3/R.SamBada/DESCRIPTION | 10 R.SamBada-0.1.3/R.SamBada/MD5 | 34 +- R.SamBada-0.1.3/R.SamBada/NEWS.md | 5 R.SamBada-0.1.3/R.SamBada/R/Postprocessing.R | 27 +- R.SamBada-0.1.3/R.SamBada/R/Run_sambada.R | 4 R.SamBada-0.1.3/R.SamBada/build/vignette.rds |binary R.SamBada-0.1.3/R.SamBada/inst/doc/R.SamBada.R | 24 - R.SamBada-0.1.3/R.SamBada/inst/doc/R.SamBada.html | 121 ++++------ R.SamBada-0.1.3/R.SamBada/man/createEnv.Rd | 22 + R.SamBada-0.1.3/R.SamBada/man/plotManhattan.Rd | 11 R.SamBada-0.1.3/R.SamBada/man/plotMap.Rd | 28 +- R.SamBada-0.1.3/R.SamBada/man/plotResultInteractive.Rd | 19 + R.SamBada-0.1.3/R.SamBada/man/prepareEnv.Rd | 28 +- R.SamBada-0.1.3/R.SamBada/man/prepareGeno.Rd | 15 - R.SamBada-0.1.3/R.SamBada/man/prepareOutput.Rd | 10 R.SamBada-0.1.3/R.SamBada/man/sambadaParallel.Rd | 28 +- 20 files changed, 240 insertions(+), 146 deletions(-)
Title: Proper Scoring Rules for Missing Value Imputation
Description: Implementation of a KL-based scoring rule to assess the quality of different missing value imputations in the broad sense as introduced in Michel et al. (2021) <arXiv:2106.03742>.
Author: Loris Michel, Meta-Lina Spohn, Jeffrey Naef
Maintainer: Loris Michel <michel@stat.math.ethz.ch>
Diff between Iscores versions 1.0.0 dated 2021-09-08 and 1.1.0 dated 2022-01-04
Iscores-1.0.0/Iscores/man/predict.crf.Rd |only Iscores-1.1.0/Iscores/DESCRIPTION | 8 Iscores-1.1.0/Iscores/MD5 | 18 Iscores-1.1.0/Iscores/NAMESPACE | 2 Iscores-1.1.0/Iscores/R/Iscores.R | 272 ++------ Iscores-1.1.0/Iscores/R/helpers.R | 765 ++++++++++++++----------- Iscores-1.1.0/Iscores/man/Iscores.Rd | 22 Iscores-1.1.0/Iscores/man/class.balancing.Rd |only Iscores-1.1.0/Iscores/man/compute_drScore.Rd | 12 Iscores-1.1.0/Iscores/man/densityRatioScore.Rd | 28 Iscores-1.1.0/Iscores/man/doevaluation.Rd |only Iscores-1.1.0/Iscores/man/sample.vars.proj.Rd |only 12 files changed, 560 insertions(+), 567 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Tamás Nepusz <ntamas@gmail.com>
Diff between igraph versions 1.2.10 dated 2021-12-15 and 1.2.11 dated 2022-01-04
DESCRIPTION | 9 +++-- MD5 | 20 ++++++------- NEWS.md | 6 +++ build/partial.rdb |binary configure | 77 +++++++++++++++++++++++---------------------------- configure.ac | 37 ++++++++++-------------- inst/NEWS.md | 6 +++ src/Makevars.in | 11 +------ src/Makevars.ucrt | 4 -- src/Makevars.win | 4 -- src/igraph_version.h | 2 - 11 files changed, 85 insertions(+), 91 deletions(-)
Title: Innovative Complex Split Procedures in Random Forests Through
Candidate Split Sampling
Description: Implements interaction forests [1], which are specific diversity forests and
the basic form of diversity forests that uses univariable, binary splitting [2].
Interaction forests (IFs) are ensembles of decision trees that model quantitative and
qualitative interaction effects using bivariable splitting. IFs come with the
Effect Importance Measure (EIM), which can be used to identify variable pairs that
feature quantitative and qualitative interaction effects with high predictive
relevance. IFs and EIM focus on well interpretable forms of interactions.
The package also offers plot functions for visualising the estimated forms of
interaction effects.
Categorical, metric, and survival outcomes are supported.
This is a fork of the R package 'ranger' (main author: Marvin N. Wright) that
implements random forests using an efficient C++ implementation.
References:
[1] Hornung, R. & Boulesteix, A.-L. (2021) Interaction Forests: Identifying and
exploiting interpretable quantitative and qualitative interaction effects.
Technical Report No. 237, Department of Statistics, University of Munich,
<doi:10.5282/ubm/epub.75269>.
[2] Hornung, R. (2022) Diversity forests: Using split sampling to enable
innovative complex split procedures in random forests.
SN Computer Science 3(2):1, <doi:10.1007/s42979-021-00920-1>.
Author: Roman Hornung [aut, cre], Marvin N. Wright [ctb, cph]
Maintainer: Roman Hornung <hornung@ibe.med.uni-muenchen.de>
Diff between diversityForest versions 0.3.1 dated 2021-04-03 and 0.3.2 dated 2022-01-04
DESCRIPTION | 23 ++- MD5 | 64 +++++----- R/diversityForest-package.R | 4 R/divfor.R | 2 R/interactionfor.R | 246 +++++++++++++++++++++++++++++------------ R/plot.interactionfor.R | 13 +- R/plotEffects.R | 25 +++- R/plotPair.R | 18 ++- R/predict.divfor.R | 2 R/predict.interactionfor.R | 2 R/tunedivfor.R | 2 build/partial.rdb |binary man/diversityForest-package.Rd | 4 man/divfor.Rd | 2 man/interactionfor.Rd | 66 +++++++---- man/plot.interactionfor.Rd | 13 +- man/plotEffects.Rd | 25 +++- man/plotPair.Rd | 2 man/predict.divfor.Rd | 2 man/predict.interactionfor.Rd | 2 man/tunedivfor.Rd | 2 src/Forest.cpp | 1 src/ForestClassification.cpp | 2 src/ForestProbability.cpp | 2 src/ForestRegression.cpp | 2 src/ForestSurvival.cpp | 2 src/RcppExports.cpp | 5 src/Tree.cpp | 2 src/TreeClassification.h | 2 src/TreeProbability.h | 2 src/TreeRegression.h | 2 src/TreeSurvival.h | 2 src/divforCpp.cpp | 1 33 files changed, 370 insertions(+), 174 deletions(-)
More information about diversityForest at CRAN
Permanent link
Title: Cycle Routing and Data for Cycling Advocacy
Description: An interface to the cycle routing/data services provided by
'CycleStreets', a not-for-profit social enterprise and advocacy
organisation. The application programming interfaces (APIs) provided
by 'CycleStreets' are documented at
(<https://www.cyclestreets.net/api/>). The focus of this package is
the journey planning API, which aims to emulate the routes taken by a
knowledgeable cyclist. An innovative feature of the routing service
of its provision of fastest, quietest and balanced profiles. These
represent routes taken to minimise time, avoid traffic and compromise
between the two, respectively.
Author: Robin Lovelace [aut, cre] (<https://orcid.org/0000-0001-5679-6536>),
Martin Lucas-Smith [aut],
Eric Krueger [ctb],
Joey Talbot [aut] (<https://orcid.org/0000-0002-6520-4560>)
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between cyclestreets versions 0.5.2 dated 2021-11-07 and 0.5.3 dated 2022-01-04
DESCRIPTION | 6 +- MD5 | 20 ++++----- NEWS.md | 4 + R/journey.R | 67 ++++++++++++++++++++----------- README.md | 4 + man/figures/README-example-1.png |binary man/figures/README-unnamed-chunk-2-1.png |binary man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/journey.Rd | 6 ++ 11 files changed, 70 insertions(+), 37 deletions(-)
Title: Algorithms for Quantitative Pedology
Description: The Algorithms for Quantitative Pedology (AQP) project was started in 2009 to organize a loosely-related set of concepts and source code on the topic of soil profile visualization, aggregation, and classification into this package (aqp). Over the past 8 years, the project has grown into a suite of related R packages that enhance and simplify the quantitative analysis of soil profile data. Central to the AQP project is a new vocabulary of specialized functions and data structures that can accommodate the inherent complexity of soil profile information; freeing the scientist to focus on ideas rather than boilerplate data processing tasks <doi:10.1016/j.cageo.2012.10.020>. These functions and data structures have been extensively tested and documented, applied to projects involving hundreds of thousands of soil profiles, and deeply integrated into widely used tools such as SoilWeb <https://casoilresource.lawr.ucdavis.edu/soilweb-apps/>. Components of the AQP project (aqp, soilDB, sharpshootR, soilReports packages) serve an important role in routine data analysis within the USDA-NRCS Soil Science Division. The AQP suite of R packages offer a convenient platform for bridging the gap between pedometric theory and practice.
Author: Dylan Beaudette [aut, cre],
Pierre Roudier [aut, ctb],
Andrew Brown [aut, ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between aqp versions 1.32 dated 2021-09-29 and 1.40 dated 2022-01-04
aqp-1.32/aqp/R/f.noise.R |only aqp-1.32/aqp/R/resample.twotheta.R |only aqp-1.32/aqp/man/f.noise.Rd |only aqp-1.32/aqp/man/resample.twotheta.Rd |only aqp-1.40/aqp/DESCRIPTION | 8 aqp-1.40/aqp/MD5 | 108 - aqp-1.40/aqp/NEWS.md | 11 aqp-1.40/aqp/R/L1_profiles.R | 8 aqp-1.40/aqp/R/SoilProfileCollection-methods.R | 20 aqp-1.40/aqp/R/SoilProfileCollection-setters.R | 70 aqp-1.40/aqp/R/SoilProfileCollection-slice-methods.R | 9 aqp-1.40/aqp/R/accumulateDepths.R | 2 aqp-1.40/aqp/R/allocate.R | 4 aqp-1.40/aqp/R/dice.R | 62 aqp-1.40/aqp/R/estimateSoilDepth.R | 40 aqp-1.40/aqp/R/getSoilDepthClass.R | 49 aqp-1.40/aqp/R/glomApply.R | 3 aqp-1.40/aqp/R/group_by.R | 11 aqp-1.40/aqp/R/huePositionCircle.R | 25 aqp-1.40/aqp/R/hzOffset.R |only aqp-1.40/aqp/R/mixMunsell.R | 4 aqp-1.40/aqp/R/mutate_profile.R | 36 aqp-1.40/aqp/R/panel.depth_function.R | 59 aqp-1.40/aqp/R/plotSPC.R | 936 +++++----- aqp-1.40/aqp/R/profileInformationIndex.R |only aqp-1.40/aqp/R/repairMissingHzDepths.R | 98 - aqp-1.40/aqp/R/simulateColor.R | 6 aqp-1.40/aqp/R/slab.R | 28 aqp-1.40/aqp/R/summarize.R | 5 aqp-1.40/aqp/R/texture.R | 637 ++++++ aqp-1.40/aqp/R/transform.R | 8 aqp-1.40/aqp/build/partial.rdb |binary aqp-1.40/aqp/data/soiltexture.rda |binary aqp-1.40/aqp/inst/WORDLIST | 9 aqp-1.40/aqp/man/L1_profiles.Rd | 5 aqp-1.40/aqp/man/accumulateDepths.Rd | 2 aqp-1.40/aqp/man/allocate.Rd | 4 aqp-1.40/aqp/man/depths.Rd | 3 aqp-1.40/aqp/man/dice.Rd | 5 aqp-1.40/aqp/man/estimateSoilDepth.Rd | 16 aqp-1.40/aqp/man/getSoilDepthClass.Rd | 9 aqp-1.40/aqp/man/glomApply.Rd | 3 aqp-1.40/aqp/man/huePositionCircle.Rd | 8 aqp-1.40/aqp/man/hzOffset.Rd |only aqp-1.40/aqp/man/mixMunsell.Rd | 4 aqp-1.40/aqp/man/mutate_profile.Rd | 9 aqp-1.40/aqp/man/profileInformationIndex.Rd |only aqp-1.40/aqp/man/repairMissingHzDepths.Rd | 45 aqp-1.40/aqp/man/subset-SoilProfileCollection-method.Rd | 7 aqp-1.40/aqp/man/subsetHz-SoilProfileCollection-method.Rd | 5 aqp-1.40/aqp/man/texture.Rd | 129 + aqp-1.40/aqp/tests/testthat/Rplots.pdf |binary aqp-1.40/aqp/tests/testthat/test-SoilProfileCollection-setters.R |only aqp-1.40/aqp/tests/testthat/test-dice.R | 56 aqp-1.40/aqp/tests/testthat/test-dplyr-verbs.R | 7 aqp-1.40/aqp/tests/testthat/test-glom.R | 1 aqp-1.40/aqp/tests/testthat/test-hzOffset.R |only aqp-1.40/aqp/tests/testthat/test-profileInformationIndex.R |only aqp-1.40/aqp/tests/testthat/test-repairMissingHzDepths.R | 45 aqp-1.40/aqp/tests/testthat/test-soil-depth.R | 104 - aqp-1.40/aqp/tests/testthat/test-texture.R |only 61 files changed, 1930 insertions(+), 793 deletions(-)
Title: Save Output of Statistical Tests
Description: Save the output of statistical tests in an organized file that can
be shared with others or used to report statistics in scientific papers.
Author: Willem Sleegers
Maintainer: Willem Sleegers <w.sleegers@me.com>
Diff between tidystats versions 0.5 dated 2020-09-21 and 0.5.1 dated 2022-01-04
tidystats-0.5.1/tidystats/DESCRIPTION | 8 tidystats-0.5.1/tidystats/MD5 | 59 - tidystats-0.5.1/tidystats/NAMESPACE | 2 tidystats-0.5.1/tidystats/NEWS.md | 11 tidystats-0.5.1/tidystats/R/data.R | 4 tidystats-0.5.1/tidystats/R/describe_data.r | 13 tidystats-0.5.1/tidystats/R/globals.r | 2 tidystats-0.5.1/tidystats/R/info.R | 5 tidystats-0.5.1/tidystats/R/tidy_stats.R | 259 +++++- tidystats-0.5.1/tidystats/README.md | 5 tidystats-0.5.1/tidystats/build/partial.rdb |only tidystats-0.5.1/tidystats/build/vignette.rds |binary tidystats-0.5.1/tidystats/inst/doc/introduction-to-tidystats.html | 408 ++-------- tidystats-0.5.1/tidystats/inst/doc/read-and-use-a-tidystats-file.html | 262 +----- tidystats-0.5.1/tidystats/inst/doc/tidystats-taxonomy.html | 213 ----- tidystats-0.5.1/tidystats/inst/results_bad.json |only tidystats-0.5.1/tidystats/inst/test_BayesFactor.R | 8 tidystats-0.5.1/tidystats/inst/test_afex.R |only tidystats-0.5.1/tidystats/inst/test_data/BayesFactor.json | 34 tidystats-0.5.1/tidystats/inst/test_data/afex.json |only tidystats-0.5.1/tidystats/inst/test_data/anova_glm.json | 8 tidystats-0.5.1/tidystats/inst/test_data/anova_lm.json | 10 tidystats-0.5.1/tidystats/inst/test_data/aov.json | 6 tidystats-0.5.1/tidystats/inst/test_data/describe_data.json | 8 tidystats-0.5.1/tidystats/inst/test_data/emmeans.json |only tidystats-0.5.1/tidystats/inst/test_data/glm.json | 10 tidystats-0.5.1/tidystats/inst/test_data/htest.json | 42 - tidystats-0.5.1/tidystats/inst/test_data/lm.json | 4 tidystats-0.5.1/tidystats/inst/test_emmeans.R |only tidystats-0.5.1/tidystats/inst/test_main.R | 12 tidystats-0.5.1/tidystats/inst/test_misc.R | 17 tidystats-0.5.1/tidystats/man/quote_source.Rd | 4 tidystats-0.5.1/tidystats/man/tidy_stats.Rd | 10 tidystats-0.5/tidystats/man/figures |only 34 files changed, 529 insertions(+), 895 deletions(-)
Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis.
Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>
Diff between SWTools versions 0.2.1.0 dated 2021-09-06 and 0.2.2.0 dated 2022-01-04
DESCRIPTION | 10 ++-- MD5 | 42 ++++++++++---------- NAMESPACE | 76 ++++++++++++++++++------------------ NEWS.md | 8 +++ R/SILO.R | 40 +++++++++++-------- R/SILOCheckConsistency.R |only R/SILOCorrectSite.R |only R/SILOMorton.R | 5 +- inst/SILOReport.Rmd | 37 +++++++++++------ man/SILOCheckConsistency.Rd |only man/SILOCorrectSite.Rd |only man/SILODoubleMass.Rd | 56 +++++++++++++------------- man/SILODownload.Rd | 90 +++++++++++++++++++++---------------------- man/SILOMap.Rd | 52 ++++++++++++------------ man/SILOSiteSummary.Rd | 1 man/SILOThiessenShp.Rd | 64 +++++++++++++++--------------- man/VeneerGetInputSets.Rd | 46 ++++++++++----------- man/VeneerGetNodesbyType.Rd | 50 +++++++++++------------ man/VeneerGetTS.Rd | 66 +++++++++++++++---------------- man/VeneerGetTSVariables.Rd | 50 +++++++++++------------ man/VeneerGetTSbyNode.Rd | 54 ++++++++++++------------- man/VeneerGetTSbyVariable.Rd | 64 +++++++++++++++--------------- man/VeneerSetPiecewise.Rd | 56 +++++++++++++------------- man/VeneerlatestRunNumber.Rd | 46 ++++++++++----------- 24 files changed, 475 insertions(+), 438 deletions(-)
Title: R Interface to 'FACTS' on Unix-Like Systems
Description: The 'rfacts' package is an R interface to the
Fixed and Adaptive Clinical Trial Simulator ('FACTS')
on Unix-like systems. It programmatically invokes 'FACTS' to run clinical
trial simulations, and it aggregates simulation output data
into tidy data frames. These capabilities provide end-to-end
automation for large-scale simulation pipelines, and
they enhance computational reproducibility.
For more information on 'FACTS' itself,
please visit <https://www.berryconsultants.com/software/>.
Author: William Michael Landau [aut, cre]
(<https://orcid.org/0000-0003-1878-3253>),
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between rfacts versions 0.1.1 dated 2021-03-27 and 0.2.0 dated 2022-01-04
DESCRIPTION | 11 +++-- MD5 | 60 ++++++++++++++++---------------- NAMESPACE | 1 NEWS.md | 5 ++ R/facts_engines.R | 2 - R/get_facts.R | 6 +-- R/package.R | 2 - R/param.R | 2 - R/prep_param_files.R | 7 +++ R/read_facts.R | 2 - R/run_facts.R | 11 ++++- R/run_flfll.R | 25 +++++++++++-- R/utils.R | 15 ++++++-- R/write_facts.R | 4 +- README.md | 1 build/vignette.rds |binary inst/doc/config.html | 6 +-- inst/doc/generate.html | 10 ++--- man/facts_engines.Rd | 2 - man/get_facts_engine.Rd | 2 - man/get_param_dirs.Rd | 2 - man/prep_param_files.Rd | 7 +++ man/read_facts.Rd | 4 +- man/run_facts.Rd | 3 + man/run_flfll.Rd | 12 +++++- man/write_facts.Rd | 4 +- tests/testthat/test-csv.R | 2 - tests/testthat/test-engines.R | 3 + tests/testthat/test-prep_param_files.R | 16 +++++--- tests/testthat/test-run_engine_contin.R | 39 +++++++++++++++++--- tests/testthat/test-utils.R | 13 +++++- 31 files changed, 189 insertions(+), 90 deletions(-)
Title: Logit Models w/Preference & WTP Space Utility Parameterizations
Description: Fast estimation of multinomial (MNL) and mixed logit (MXL) models in R. Models can be estimated using "Preference" space or "Willingness-to-pay" (WTP) space utility parameterizations. Weighted models can also be estimated. An option is available to run a parallelized multistart optimization loop with random starting points in each iteration, which is useful for non-convex problems like MXL models or models with WTP space utility parameterizations. The main optimization loop uses the 'nloptr' package to minimize the negative log-likelihood function. Additional functions are available for computing and comparing WTP from both preference space and WTP space models and for predicting expected choices and choice probabilities for sets of alternatives based on an estimated model. MXL models assume uncorrelated heterogeneity covariances and are estimated using maximum simulated likelihood based on the algorithms in Train (2009) "Discrete Choice Methods with Simulation, 2nd Edition" <doi:10.1017/CBO9780511805271>.
Author: John Helveston [aut, cre, cph]
(<https://orcid.org/0000-0002-2657-9191>),
Connor Forsythe [ctb]
Maintainer: John Helveston <john.helveston@gmail.com>
Diff between logitr versions 0.4.0 dated 2021-10-25 and 0.5.0 dated 2022-01-04
DESCRIPTION | 12 +- MD5 | 59 +++++------ NAMESPACE | 1 NEWS.md | 5 R/encoding.R | 1 R/inputChecks.R | 98 +++---------------- R/logitr.R | 15 ++ R/modelInputs.R | 37 ++++++- R/optimLoop.R | 191 ++++++++++++++++++++------------------ R/predict.R | 39 +++++-- README.md | 34 +++--- build/partial.rdb |binary inst/CITATION | 6 - inst/doc/basic_usage.Rmd | 4 inst/doc/basic_usage.html | 63 ++++++------ inst/doc/interactions.html | 4 inst/doc/mnl_models.html | 56 +++++------ inst/doc/mnl_models_weighted.html | 152 +++++++++++++++--------------- inst/doc/mxl_models.Rmd | 28 +---- inst/doc/mxl_models.html | 156 ++++++++++++++----------------- inst/extdata/mxl_pref.Rds |binary inst/extdata/mxl_wtp.Rds |binary man/dummyCode.Rd | 1 man/fquantile.Rd |only man/logitr.Rd | 12 +- man/predictChoices.Rd | 1 man/predictProbs.Rd | 1 man/simulateShares.Rd | 1 tests/testthat/test_startPars.R | 2 vignettes/basic_usage.Rmd | 4 vignettes/mxl_models.Rmd | 28 +---- 31 files changed, 503 insertions(+), 508 deletions(-)
Title: Advanced Tables for Markdown/HTML
Description: Tables with state-of-the-art layout elements such as row spanners,
column spanners, table spanners, zebra striping, and more. While allowing
advanced layout, the underlying css-structure is simple in order to maximize
compatibility with common word processors. The package also contains a few
text formatting functions that help outputting text compatible with HTML/LaTeX.
Author: Max Gordon [aut, cre],
Stephen Gragg [aut],
Peter Konings [aut]
Maintainer: Max Gordon <max@gforge.se>
Diff between htmlTable versions 2.3.0 dated 2021-10-12 and 2.4.0 dated 2022-01-04
DESCRIPTION | 11 - MD5 | 49 +++-- NAMESPACE | 1 NEWS.md | 11 + R/concatHtmlTables.R | 2 R/txtFrmt.R | 254 ++----------------------------- R/txtFrmt_round.R |only R/txtFrmt_round_data.frame.R |only build/vignette.rds |binary inst/doc/complex_tables.html | 4 inst/doc/general.html | 4 inst/doc/text_formatters.R |only inst/doc/text_formatters.Rmd |only inst/doc/text_formatters.html |only inst/doc/tidyHtmlTable.html | 4 inst/examples/concatHtmlTables_example.R |only inst/examples/htmlTable_example.R | 67 +++----- inst/examples/tidyHtmlTable_example.R | 41 +++-- man/concatHtmlTables.Rd | 75 +-------- man/htmlTable.Rd | 67 +++----- man/tidyHtmlTable.Rd | 41 +++-- man/txtInt.Rd | 7 man/txtMergeLines.Rd | 2 man/txtRound.Rd | 65 ++++++- tests/testthat/structure.tex |only tests/testthat/test-htmlTable.R | 10 - tests/testthat/test-interactiveTable.R | 55 +++--- tests/testthat/test-txtFrmt.R | 6 tests/visual_tests/word_test.html |only vignettes/text_formatters.Rmd |only 30 files changed, 281 insertions(+), 495 deletions(-)
Title: Make Functions that Can Recurse Infinitely
Description: Implements a trampoline algorithm for R that let's users write recursive functions
that get around R's stack call limitations, enabling theoretically infinite recursion. The
algorithm is based around generator function as implemented in the 'coro' package, and is
based almost completely on the 'trampoline' module from Python <https://gitlab.com/ferreum/trampoline>.
Author: Russell Dinnage [aut, cre, cph]
(<https://orcid.org/0000-0003-0846-2819>)
Maintainer: Russell Dinnage <r.dinnage@gmail.com>
Diff between trampoline versions 0.1.0 dated 2021-12-10 and 0.1.1 dated 2022-01-04
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 6 R/trampoline.R | 19 + README.md | 14 - inst/doc/tampolining.R | 22 + inst/doc/tampolining.Rmd | 420 ++++++++++++++++++------------------ inst/doc/tampolining.html | 35 ++- man/figures/README-benchmark2-1.png |binary tests/testthat/test-trampoline.R | 45 ++- vignettes/tampolining.Rmd | 420 ++++++++++++++++++------------------ 11 files changed, 541 insertions(+), 466 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre],
RStudio, PBC [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 0.14.0 dated 2021-07-21 and 0.15.0 dated 2022-01-04
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Title: Functions and Datasets for the Data Science Course at IBAW
Description: A collection of useful functions and datasets for the Data Science
Course at IBAW in Lucerne.
Author: Stefan Lanz
Maintainer: Stefan Lanz <slanz1137@gmail.com>
Diff between ibawds versions 0.2.0 dated 2021-05-29 and 0.3.2 dated 2022-01-04
ibawds-0.2.0/ibawds/R/latex.R |only ibawds-0.3.2/ibawds/DESCRIPTION | 21 ++- ibawds-0.3.2/ibawds/LICENSE | 2 ibawds-0.3.2/ibawds/MD5 | 44 +++++--- ibawds-0.3.2/ibawds/NAMESPACE | 2 ibawds-0.3.2/ibawds/R/cran_packages.R | 77 ++++++++++---- ibawds-0.3.2/ibawds/R/grading_tables.R | 12 +- ibawds-0.3.2/ibawds/R/install.R | 79 +++------------ ibawds-0.3.2/ibawds/R/slide_tools.R |only ibawds-0.3.2/ibawds/R/sysdata.rda |binary ibawds-0.3.2/ibawds/README.md |only ibawds-0.3.2/ibawds/inst |only ibawds-0.3.2/ibawds/man/define_latex_stats.Rd | 4 ibawds-0.3.2/ibawds/man/figures |only ibawds-0.3.2/ibawds/man/grading_tables.Rd | 2 ibawds-0.3.2/ibawds/man/ibawds-package.Rd | 6 - ibawds-0.3.2/ibawds/man/install_ibawds.Rd | 16 --- ibawds-0.3.2/ibawds/man/n_available_packages.Rd | 24 +++- ibawds-0.3.2/ibawds/man/set_slide_options.Rd |only ibawds-0.3.2/ibawds/tests/testthat/_snaps |only ibawds-0.3.2/ibawds/tests/testthat/test-cran_packages.R | 37 +++++-- ibawds-0.3.2/ibawds/tests/testthat/test-dist_plots.R |only ibawds-0.3.2/ibawds/tests/testthat/test-grading_tables.R |only ibawds-0.3.2/ibawds/tests/testthat/test-install.R | 24 +++- ibawds-0.3.2/ibawds/tests/testthat/test-slide_tools.R |only 25 files changed, 206 insertions(+), 144 deletions(-)
Title: Discriminant Analysis Incorporating Individual Uncertainties
Description: The qda() function from package 'MASS' is extended to calculate a weighted linear (LDA) and quadratic discriminant analysis (QDA) by changing the group variances and group means based on cell-wise uncertainties.
The uncertainties can be derived e.g. through relative errors for each individual measurement (cell), not only row-wise or column-wise uncertainties.
The method can be applied compositional data (e.g. portions of substances, concentrations) and non-compositional data.
Author: Solveig Pospiech [aut, cre]
Maintainer: Solveig Pospiech <s.pospiech@hzdr.de>
Diff between vdar versions 0.1.3 dated 2020-07-17 and 0.1.3-2 dated 2022-01-04
DESCRIPTION | 11 +++++------ MD5 | 11 ++++++----- NAMESPACE | 2 -- NEWS.md |only R/weighted_DA.R | 44 ++++++++++++++++++++------------------------ man/vlda.Rd | 2 +- man/vqda.Rd | 2 +- 7 files changed, 33 insertions(+), 39 deletions(-)
Title: Landscape Visualizations in R and 'Unity'
Description: Functions for the retrieval, manipulation, and visualization of
'geospatial' data, with an aim towards producing '3D' landscape
visualizations in the 'Unity' '3D' rendering engine. Functions are also
provided for retrieving elevation data and base map tiles from the 'USGS'
National Map <https://apps.nationalmap.gov/services/>.
Author: Michael Mahoney [aut, cre] (<https://orcid.org/0000-0003-2402-304X>),
Mike Johnson [rev] (Mike reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>),
Sydney Foks [rev] (Sydney reviewed the package (v. 0.2.1) for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between terrainr versions 0.5.0 dated 2021-08-05 and 0.5.1 dated 2022-01-04
terrainr-0.5.0/terrainr/tests/testthat/test-2-get_tiles_naip.R |only terrainr-0.5.1/terrainr/DESCRIPTION | 12 +- terrainr-0.5.1/terrainr/MD5 | 35 +++--- terrainr-0.5.1/terrainr/NEWS.md | 14 ++ terrainr-0.5.1/terrainr/R/get_tiles.R | 14 +- terrainr-0.5.1/terrainr/R/hit_api.R | 3 terrainr-0.5.1/terrainr/R/merge_rasters.R | 37 +++++- terrainr-0.5.1/terrainr/README.md | 10 + terrainr-0.5.1/terrainr/build/vignette.rds |binary terrainr-0.5.1/terrainr/inst/CITATION | 2 terrainr-0.5.1/terrainr/man/get_tiles.Rd | 1 terrainr-0.5.1/terrainr/man/merge_rasters.Rd | 9 + terrainr-0.5.1/terrainr/man/terrainr-package.Rd | 6 - terrainr-0.5.1/terrainr/tests/testthat/test-2-get_tiles_ecosystems.R |only terrainr-0.5.1/terrainr/tests/testthat/test-4-merge_rasters.R | 55 +++++++++- terrainr-0.5.1/terrainr/tests/testthat/test-combine_overlays.R | 4 terrainr-0.5.1/terrainr/tests/testthat/testdata/NewNaip.png |only terrainr-0.5.1/terrainr/tests/testthat/testdata/NewNaip_gr.tif |only terrainr-0.5.1/terrainr/tests/testthat/testdata/NewestNaip.png |only terrainr-0.5.1/terrainr/tests/testthat/testdata/NewestNaip_gr.tif |only terrainr-0.5.1/terrainr/tests/testthat/testdata/eco.png |only terrainr-0.5.1/terrainr/tests/testthat/testdata/manifest_ort.png |binary 22 files changed, 151 insertions(+), 51 deletions(-)
Title: Create Interactive Linked Charts with Minimal Code
Description: An easy-to-use tool to employ interactivity in every-day exploratory analysis. It contains
a collection of most commonly used types of charts (such as scatter plots, line plots, heatmaps, bar charts),
which can be linked to each other or to other interactive elements with just few lines of code.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between rlc versions 0.4.0 dated 2021-09-17 and 0.4.1 dated 2022-01-04
DESCRIPTION | 8 MD5 | 44 +-- NEWS.md | 18 + R/lc.R | 471 ++++++++++++++++++------------------ inst/http_root/linked-charts.css | 11 inst/http_root/linked-charts.min.js | 2 man/chartEvent.Rd | 18 - man/closePage.Rd | 2 man/dat.Rd | 19 + man/getMarked.Rd | 14 - man/getPage.Rd | 20 - man/lc_bars.Rd | 82 +++--- man/lc_colourSlider.Rd | 18 - man/lc_heatmap.Rd | 41 +-- man/lc_hist.Rd | 22 - man/lc_html.Rd | 18 - man/lc_image.Rd | 16 - man/lc_input.Rd | 21 - man/lc_line.Rd | 74 ++--- man/lc_scatter.Rd | 74 ++--- man/mark.Rd | 2 man/openPage.Rd | 3 man/setProperties.Rd | 6 23 files changed, 534 insertions(+), 470 deletions(-)
Title: Tools to Generate Vector Time Series
Description: A method 'generate()' is implemented in this package for the random
generation of vector time series according to models obtained by 'RMAWGEN',
'vars' or other packages. This package was created to generalize the
algorithms of the 'RMAWGEN' package for the analysis and generation of any
environmental vector time series.
Author: Emanuele Cordano
Maintainer: Emanuele Cordano <emanuele.cordano@gmail.com>
Diff between RGENERATE versions 1.3.5 dated 2017-02-11 and 1.3.6 dated 2022-01-04
DESCRIPTION | 14 ++++---- MD5 | 34 +++++++++++++++++--- NAMESPACE | 1 R/generate.R | 8 +++- build |only inst/CITATION | 6 +-- inst/doc |only inst/outcomes |only inst/useful_files |only man/gapFilling.Rd | 14 ++++---- man/generate.Rd | 88 +++++++++++++++++++++++++++++++++++++++--------------- tests |only vignettes |only 13 files changed, 118 insertions(+), 47 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cre, cph],
Paul Buerkner [ctb],
Maxime Herve [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Henrik Singmann [ctb]
Maintainer: Russell V. Lenth <russell-lenth@uiowa.edu>
Diff between emmeans versions 1.7.1-1 dated 2021-11-29 and 1.7.2 dated 2022-01-04
DESCRIPTION | 8 +-- MD5 | 66 +++++++++++++++--------------- NEWS.md | 19 ++++++++ R/0nly-internal.R | 3 - R/MCMC-support.R | 1 R/eff-size.R | 18 +++----- R/emtrends.R | 12 ++++- R/gam-support.R | 9 +++- R/glht-support.R | 9 ---- R/helpers.R | 2 R/multiple-models.R | 4 - R/nested.R | 2 R/qdrg.R | 16 +++---- R/ref-grid.R | 11 ++--- R/summary.R | 79 ++++++++++++++++++++++++++----------- build/vignette.rds |binary inst/doc/FAQs.html | 6 +- inst/doc/basics.html | 4 - inst/doc/comparisons.html | 12 ++--- inst/doc/confidence-intervals.html | 14 +++--- inst/doc/interactions.html | 16 +++---- inst/doc/messy-data.html | 4 - inst/doc/models.html | 4 - inst/doc/predictions.html | 4 - inst/doc/sophisticated.html | 6 -- inst/doc/transformations.html | 38 ++++++++--------- inst/doc/utilities.html | 4 - inst/doc/vignette-topics.html | 4 - inst/doc/xplanations.html | 15 ++++--- inst/doc/xtending.html | 8 +-- man/eff_size.Rd | 18 +++----- man/glht-support.Rd | 9 ---- man/mcmc-support.Rd | 1 man/qdrg.Rd | 16 +++---- 34 files changed, 244 insertions(+), 198 deletions(-)
Title: Soybean Nested Association Mapping Dataset
Description: Genomic and multi-environmental soybean data. Soybean Nested
Association Mapping (SoyNAM) project dataset funded by the United Soybean Board
(USB). BLUP function formats data for genome-wide prediction and association analysis.
Author: Alencar Xavier, William Beavis, James Specht, Brian Diers, Rouf Mian, Reka Howard,
George Graef, Randall Nelson, William Schapaugh, Dechun Wang, Grover Shannon, Leah McHale,
Perry Cregan, Qijian Song, Miguel Lopez, William Muir, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between SoyNAM versions 1.6.1 dated 2021-01-21 and 1.6.2 dated 2022-01-04
DESCRIPTION | 13 +++---- MD5 | 22 +++++++---- NAMESPACE | 2 + R/BLUP.R | 92 ++++++++++++++++++++++++++++++++++++++------------ R/RcppExports.R |only data/soybase.RData |binary data/soyin.RData |binary data/soynam.RData |binary man/BLUP.Rd | 9 +++- man/SoyNAM-package.Rd | 4 +- man/soynam.Rd | 6 +-- src |only 12 files changed, 105 insertions(+), 43 deletions(-)
Title: State-Dependent Empirical Analysis
Description: A set of tools for state-dependent
empirical analysis through both VAR- and local projection-based
state-dependent forecasts, impulse response functions,
historical decompositions, and forecast error variance decompositions.
Author: Tyler J. Pike [aut, cre]
Maintainer: Tyler J. Pike <tjpike7@gmail.com>
Diff between sovereign versions 1.2.0 dated 2021-07-23 and 1.2.1 dated 2022-01-04
sovereign |only 1 file changed
Title: Analysis of Simulation Studies Including Monte Carlo Error
Description: Summarise results from simulation studies and compute Monte Carlo
standard errors of commonly used summary statistics. This package is modelled
on the 'simsum' user-written command in 'Stata' (White I.R., 2010
<https://www.stata-journal.com/article.html?article=st0200>), further extending
it with additional functionality.
Author: Alessandro Gasparini [aut, cre]
(<https://orcid.org/0000-0002-8319-7624>),
Ian R. White [aut]
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between rsimsum versions 0.11.0 dated 2021-10-20 and 0.11.1 dated 2022-01-04
DESCRIPTION | 6 - MD5 | 38 +++---- NEWS.md | 16 +++ R/autoplot.multisimsum.R | 4 R/data.R | 1 R/multisimsum.R | 2 R/simsum.R | 2 R/summary.multisimsum.R | 2 R/summary.simsum.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.Rmd | 2 inst/doc/A-introduction.html | 202 ++++++++++++++++++++++++++++++++++++++- inst/doc/B-relhaz.html | 200 +++++++++++++++++++++++++++++++++++++- inst/doc/C-plotting.html | 200 +++++++++++++++++++++++++++++++++++++- inst/doc/D-nlp.html | 200 +++++++++++++++++++++++++++++++++++++- inst/doc/E-custom-inputs.html | 200 +++++++++++++++++++++++++++++++++++++- inst/doc/F-rsimsumtidyverse.html | 200 +++++++++++++++++++++++++++++++++++++- man/MIsim.Rd | 2 vignettes/A-introduction.Rmd | 2 20 files changed, 1223 insertions(+), 58 deletions(-)
Title: River Network Distance Computation and Applications
Description: Reads river network shape files and computes network distances.
Also included are a variety of computation and graphical tools designed
for fisheries telemetry research, such as minimum home range, kernel density
estimation, and clustering analysis using empirical k-functions with
a bootstrap envelope. Tools are also provided for editing the river
networks, meaning there is no reliance on external software.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between riverdist versions 0.15.4 dated 2021-09-10 and 0.15.5 dated 2022-01-04
DESCRIPTION | 10 MD5 | 14 NEWS.md | 212 ++--- build/vignette.rds |binary inst/doc/riverdist_vignette.R | 636 +++++++-------- inst/doc/riverdist_vignette.html | 1644 +++++++++++++++++++-------------------- man/riverdist-package.Rd | 68 - tests/testthat/test_riverdist.R | 941 +++++++++++----------- 8 files changed, 1766 insertions(+), 1759 deletions(-)
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
The package includes demos reproducing analyzes presented
in the book "Multiple Comparisons Using R" (Bretz, Hothorn,
Westfall, 2010, CRC Press).
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Frank Bretz [aut],
Peter Westfall [aut],
Richard M. Heiberger [ctb],
Andre Schuetzenmeister [ctb],
Susan Scheibe [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between multcomp versions 1.4-17 dated 2021-04-29 and 1.4-18 dated 2022-01-04
DESCRIPTION | 10 +++++----- MD5 | 25 +++++++++++++------------ NAMESPACE | 2 +- R/helpers.R | 17 +++++++++++++---- R/pqfunctions.R | 6 +++--- build/vignette.rds |binary data/cholesterol.rda |binary data/litter.rda |binary inst/NEWS | 4 ++++ inst/doc/chfls1.pdf |binary inst/doc/generalsiminf.pdf |binary inst/doc/multcomp-examples.pdf |binary man/modelparm.Rd | 6 +++--- tests/regtest-fixest.R |only 14 files changed, 42 insertions(+), 28 deletions(-)
Title: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and
'APSIM' Classic
Description: The functions in this package inspect, read, edit and run files for 'APSIM' "Next Generation" ('JSON')
and 'APSIM' "Classic" ('XML'). The files with an 'apsim' extension correspond to
'APSIM' Classic (7.x) - Windows only - and the ones with an 'apsimx' extension correspond to 'APSIM' "Next Generation".
For more information about 'APSIM' see (<https://www.apsim.info/>) and for 'APSIM'
next generation (<https://apsimnextgeneration.netlify.app/>).
Author: Fernando Miguez [aut, cre] (<https://orcid.org/0000-0002-4627-8329>)
Maintainer: Fernando Miguez <femiguez@iastate.edu>
Diff between apsimx versions 2.2 dated 2021-12-04 and 2.3.1 dated 2022-01-04
DESCRIPTION | 10 MD5 | 76 - NAMESPACE | 4 NEWS.md | 10 R/apsim_met.R | 198 ++++ R/apsimx.R | 2 R/apsimx_soil_profile.R | 2 R/compare_apsim.R | 131 ++- R/compare_apsim_met.R | 49 - R/get_chirps_apsim_met.R | 7 R/get_daymet_apsim_met.R | 194 ---- R/get_gsod_apsim_met.R | 11 R/get_iemre_apsim_met.R | 6 R/get_ssurgo_soil_profile.R | 4 R/get_ssurgo_tables.R | 4 R/optim_apsim.R | 185 +++- R/optim_apsimx.R | 112 ++ R/sens_apsimx.R | 52 - R/zzz.R | 8 README.md | 2 build/partial.rdb |binary inst/doc/apsimx-scripts.html | 6 inst/doc/apsimx.html | 10 inst/doc/optim-apsim.html | 20 inst/doc/sensitivity-apsim.html | 59 - inst/extdata/Maize.apsimx | 1460 +++++++++++++++++------------------ inst/extdata/Wheat.apsimx | 1466 ++++++++++++++++++------------------ man/add_column_apsim_met.Rd |only man/compare_apsim.Rd | 9 man/get_daymet_apsim_met.Rd | 55 - man/get_gsod_apsim_met.Rd | 4 man/get_iemre_apsim_met.Rd | 1 man/optim_apsim.Rd | 16 man/optim_apsimx.Rd | 12 man/plot.met.Rd | 4 tests/test_apsim_met.R |only tests/test_compare_apsim.R | 16 tests/test_get_isric_soil_profile.R | 3 tests/test_optim_apsimx.R | 153 +++ tests/test_vignette.R | 4 40 files changed, 2443 insertions(+), 1922 deletions(-)
Title: Multivariate Normal Variance Mixtures
Description: Functions for working with (grouped) multivariate normal variance mixture
distributions (evaluation of distribution functions and densities,
random number generation and parameter estimation), including
Student's t distribution for non-integer degrees-of-freedom as well as the grouped t
distribution and copula with multiple degrees-of-freedom parameters.
Author: Marius Hofert [aut, cre],
Erik Hintz [aut],
Christiane Lemieux [aut]
Maintainer: Marius Hofert <marius.hofert@uwaterloo.ca>
Diff between nvmix versions 0.0-6 dated 2021-05-12 and 0.0-7 dated 2022-01-04
DESCRIPTION | 13 +- MD5 | 21 ++- NAMESPACE | 12 +- R/Student.R | 194 +++++++++++++++++++++++++++------- R/copulafitting.R |only R/skewstudent.R |only build/vignette.rds |binary data/numerical_experiments_data.RData |binary inst/doc/nvmix_functionality.html | 4 inst/doc/nvmix_riskmeasures.html | 4 man/copula.Rd | 10 + man/pgnvmix.Rd | 4 man/skewstudent.Rd |only 13 files changed, 202 insertions(+), 60 deletions(-)
Title: Exchange Commands Between R and 'JavaScript'
Description: An 'httpuv' based bridge between R and 'JavaScript'. Provides an easy way to exchange commands and data between a web page and a currently running R session.
Author: Svetlana Ovchinnikova [aut, cre],
Simon Anders [aut]
Maintainer: Svetlana Ovchinnikova <s.ovchinnikova@zmbh.uni-heidelberg.de>
Diff between jrc versions 0.5.0 dated 2021-09-16 and 0.5.1 dated 2022-01-04
DESCRIPTION | 11 +++--- MD5 | 12 +++---- NEWS.md | 7 ++++ R/jrc.R | 25 +++++++++------ inst/http_root/jrc.js | 79 +++++++++++++++++++++++++++----------------------- man/callFunction.Rd | 2 - man/openPage.Rd | 5 ++- 7 files changed, 83 insertions(+), 58 deletions(-)
Title: Extensions for 'Flextable'
Description: Build display tables easily by extending the functionality of the
'flextable' package. Features include spanning header, grouping rows,
parsing markdown and so on.
Author: Atsushi Yasumoto [aut, cph, cre]
(<https://orcid.org/0000-0002-8335-495X>),
David Gohel [ctb],
Romain François [ctb] (<https://orcid.org/0000-0002-2444-4226>)
Maintainer: Atsushi Yasumoto <atusy.rpkg@gmail.com>
Diff between ftExtra versions 0.2.0 dated 2021-03-28 and 0.3.0 dated 2022-01-04
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 10 R/as-paragraph-md.R | 3 R/colformat.R | 7 R/header-transform.R | 1 README.md | 3 build/vignette.rds |binary inst/doc/format_columns.html | 754 ++++++++++++++++++++++++++-------------- inst/doc/group-rows.html | 369 ++++++++++++++++--- inst/doc/transform-headers.html | 311 ++++++++++++++-- man/as_flextable_methods.Rd | 4 man/as_paragraph_md.Rd | 3 man/colformat_md.Rd | 3 14 files changed, 1119 insertions(+), 383 deletions(-)
Title: Alternating Optimization
Description: Alternating optimization of (high-dimensional) functions is an
iterative procedure for minimizing (or maximizing) jointly over all
parameters by alternately optimizing parameter subsets. For a reference,
see Bezdek and Hathaway (2002) "Some Notes on Alternating Optimization"
<doi:10.1007/3-540-45631-7_39>.
Author: Lennart Oelschläger [aut, cre]
(<https://orcid.org/0000-0001-5421-9313>)
Maintainer: Lennart Oelschläger <lennart.oelschlaeger@uni-bielefeld.de>
Diff between ao versions 0.1.4 dated 2021-10-06 and 0.2.1 dated 2022-01-04
ao-0.1.4/ao/R/print.ao.R |only ao-0.1.4/ao/man/print.ao.Rd |only ao-0.2.1/ao/DESCRIPTION | 14 ao-0.2.1/ao/MD5 | 56 ++- ao-0.2.1/ao/NAMESPACE | 16 ao-0.2.1/ao/NEWS.md | 49 ++ ao-0.2.1/ao/R/ao.R | 336 ++++++++++-------- ao-0.2.1/ao/R/set_f.R |only ao-0.2.1/ao/R/utils.R |only ao-0.2.1/ao/R/zzz.R | 23 - ao-0.2.1/ao/README.md | 97 +++-- ao-0.2.1/ao/build |only ao-0.2.1/ao/inst |only ao-0.2.1/ao/man/ao.Rd | 66 ++- ao-0.2.1/ao/man/euclidean.Rd |only ao-0.2.1/ao/man/figures/README-example-1.png |only ao-0.2.1/ao/man/figures/README-example-2.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-1.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-10.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-11.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-12.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-13.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-14.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-15.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-16.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-17.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-18.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-2.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-3.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-4.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-5.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-6.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-7.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-8.png |only ao-0.2.1/ao/man/figures/README-unnamed-chunk-2-9.png |only ao-0.2.1/ao/man/figures/logo.png |binary ao-0.2.1/ao/man/is_number.Rd |only ao-0.2.1/ao/man/set_f.Rd |only ao-0.2.1/ao/man/timed.Rd |only ao-0.2.1/ao/man/try_silent.Rd |only ao-0.2.1/ao/tests/testthat/_snaps |only ao-0.2.1/ao/tests/testthat/test-ao.R | 47 -- ao-0.2.1/ao/tests/testthat/test-set_f.R |only ao-0.2.1/ao/tests/testthat/test-utils.R |only ao-0.2.1/ao/vignettes |only 45 files changed, 422 insertions(+), 282 deletions(-)
Title: 'HTMLWidget' Wrapper of 'UpSet.js' for Exploring Large Set
Intersections
Description: 'UpSet.js' is a re-implementation of 'UpSetR' to create interactive set visualizations for more than three sets.
This is a 'htmlwidget' wrapper around the 'JavaScript' library 'UpSet.js'.
Author: Samuel Gratzl [aut, cre]
Maintainer: Samuel Gratzl <sam@sgratzl.com>
Diff between upsetjs versions 1.9.0 dated 2021-02-15 and 1.10.10 dated 2022-01-04
upsetjs-1.10.10/upsetjs/DESCRIPTION | 14 upsetjs-1.10.10/upsetjs/LICENSE | 4 upsetjs-1.10.10/upsetjs/MD5 | 143 +- upsetjs-1.10.10/upsetjs/NAMESPACE | 3 upsetjs-1.10.10/upsetjs/R/attributes.R | 106 +- upsetjs-1.10.10/upsetjs/R/dash.R |only upsetjs-1.10.10/upsetjs/R/data-helpers.R | 231 ++-- upsetjs-1.10.10/upsetjs/R/data.R | 527 +++++----- upsetjs-1.10.10/upsetjs/R/queries.R | 43 upsetjs-1.10.10/upsetjs/R/selection.R | 20 upsetjs-1.10.10/upsetjs/R/shiny.R | 16 upsetjs-1.10.10/upsetjs/R/style.R | 385 ++++--- upsetjs-1.10.10/upsetjs/R/upsetjs-package.R | 2 upsetjs-1.10.10/upsetjs/R/upsetjs.R | 131 +- upsetjs-1.10.10/upsetjs/R/utils.R | 141 +- upsetjs-1.10.10/upsetjs/README.md |only upsetjs-1.10.10/upsetjs/inst/dash |only upsetjs-1.10.10/upsetjs/inst/doc/colors.html | 22 upsetjs-1.10.10/upsetjs/inst/doc/combinationModes.html | 22 upsetjs-1.10.10/upsetjs/inst/doc/got.html | 22 upsetjs-1.10.10/upsetjs/inst/doc/kmap.html | 18 upsetjs-1.10.10/upsetjs/inst/doc/upsetjs.Rmd | 8 upsetjs-1.10.10/upsetjs/inst/doc/upsetjs.html | 80 - upsetjs-1.10.10/upsetjs/inst/doc/venn.html | 22 upsetjs-1.10.10/upsetjs/inst/htmlwidgets/upsetjs.js.LICENSE.txt | 22 upsetjs-1.10.10/upsetjs/man/addCategoricalAttribute.Rd | 5 upsetjs-1.10.10/upsetjs/man/addNumericAttribute.Rd | 5 upsetjs-1.10.10/upsetjs/man/addQuery.Rd | 5 upsetjs-1.10.10/upsetjs/man/asCombination.Rd | 3 upsetjs-1.10.10/upsetjs/man/asSet.Rd | 3 upsetjs-1.10.10/upsetjs/man/chartFontSizes.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartKarnaughMapLabels.Rd | 6 upsetjs-1.10.10/upsetjs/man/chartKarnaughMapLayout.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartLabels.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartLayout.Rd | 16 upsetjs-1.10.10/upsetjs/man/chartProps.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartStyleFlags.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartTheme.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartVennLabels.Rd | 5 upsetjs-1.10.10/upsetjs/man/chartVennLayout.Rd | 5 upsetjs-1.10.10/upsetjs/man/clearAttributes.Rd | 6 upsetjs-1.10.10/upsetjs/man/clearQueries.Rd | 7 upsetjs-1.10.10/upsetjs/man/fromDataFrame.Rd | 3 upsetjs-1.10.10/upsetjs/man/fromExpression.Rd | 3 upsetjs-1.10.10/upsetjs/man/fromList.Rd | 3 upsetjs-1.10.10/upsetjs/man/generateDistinctIntersections.Rd | 5 upsetjs-1.10.10/upsetjs/man/generateIntersections.Rd | 5 upsetjs-1.10.10/upsetjs/man/generateUnions.Rd | 5 upsetjs-1.10.10/upsetjs/man/getCombinations.Rd | 5 upsetjs-1.10.10/upsetjs/man/getElements.Rd | 5 upsetjs-1.10.10/upsetjs/man/getSets.Rd | 5 upsetjs-1.10.10/upsetjs/man/interactiveChart.Rd | 7 upsetjs-1.10.10/upsetjs/man/queryLegend.Rd | 7 upsetjs-1.10.10/upsetjs/man/setAttributes.Rd | 9 upsetjs-1.10.10/upsetjs/man/setCombinations.Rd | 5 upsetjs-1.10.10/upsetjs/man/setElements.Rd | 5 upsetjs-1.10.10/upsetjs/man/setQueries.Rd | 6 upsetjs-1.10.10/upsetjs/man/setSelection.Rd | 5 upsetjs-1.10.10/upsetjs/man/setSets.Rd | 5 upsetjs-1.10.10/upsetjs/man/upsetjs.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsDash.Rd |only upsetjs-1.10.10/upsetjs/man/upsetjsEulerDiagram.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsEulerDiagramProxy.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsKarnaughMap.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsKarnaughMapProxy.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsProxy.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsSizingPolicy.Rd | 3 upsetjs-1.10.10/upsetjs/man/upsetjsVennDiagram.Rd | 2 upsetjs-1.10.10/upsetjs/man/upsetjsVennDiagramProxy.Rd | 2 upsetjs-1.10.10/upsetjs/tests/testthat/helpers.R | 19 upsetjs-1.10.10/upsetjs/tests/testthat/test-data.R | 258 ++-- upsetjs-1.10.10/upsetjs/tests/testthat/test-toyset1.R | 16 upsetjs-1.10.10/upsetjs/tests/testthat/test-toyset2.R | 2 upsetjs-1.10.10/upsetjs/vignettes/upsetjs.Rmd | 8 upsetjs-1.9.0/upsetjs/inst/htmlwidgets/upsetjs.js |only 75 files changed, 1320 insertions(+), 1168 deletions(-)
Title: A Soil Survey Toolkit
Description: Miscellaneous soil data management, summary, visualization, and conversion utilities to support soil survey.
Author: Dylan Beaudette [cre, aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut],
USDA-NRCS Soil Survey Staff [ctb]
Maintainer: Dylan Beaudette <dylan.beaudette@usda.gov>
Diff between sharpshootR versions 1.8.4 dated 2021-12-21 and 1.9 dated 2022-01-04
DESCRIPTION | 8 ++-- MD5 | 34 ++++++++--------- NEWS.md | 4 +- R/vizAnnualClimate.R | 84 ++++-------------------------------------- R/vizFlatsPosition.R | 25 +++++++++--- R/vizGeomorphicComponent.R | 15 ++++++- R/vizHillslopePosition.R | 31 +++++---------- R/vizMountainPosition.R | 24 +++++++++--- R/vizSurfaceShape.R | 30 +++++---------- R/vizTerracePosition.R | 27 +++++++++---- man/vizAnnualClimate.Rd | 70 ----------------------------------- man/vizFlatsPosition.Rd | 20 +++++++--- man/vizGeomorphicComponent.Rd | 10 ++++- man/vizHillslopePosition.Rd | 22 ----------- man/vizMountainPosition.Rd | 20 +++++++--- man/vizSurfaceShape.Rd | 22 ----------- man/vizTerracePosition.Rd | 20 +++++++--- tests/testthat/Rplots.pdf |binary 18 files changed, 175 insertions(+), 291 deletions(-)
Title: Species-Habitat Associations
Description: Analyse species-habitat associations in R. Therefore, information about the location
of the species (as a point pattern) is needed together with environmental conditions
(as a categorical raster). To test for significance habitat associations, one of
the two components is randomized. Methods are mainly based on Plotkin et al. (2000)
<doi:10.1006/jtbi.2000.2158> and Harms et al. (2001) <doi:10.1111/j.1365-2745.2001.00615.x>.
Author: Maximillian H.K. Hesselbarth [aut, cre]
(<https://orcid.org/0000-0003-1125-9918>),
Marco Sciaini [aut] (<https://orcid.org/0000-0002-3042-5435>)
Maintainer: Maximillian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between shar versions 1.3 dated 2021-12-06 and 1.3.1 dated 2022-01-04
DESCRIPTION | 6 - MD5 | 104 ++++++++++++++------------- NAMESPACE | 2 NEWS.md | 5 + R/calculate_energy.R | 14 ++- R/classify_habitats.R | 31 ++++---- R/create_neighbourhood.R | 4 - R/estimate_pcf_fast.R | 16 ++-- R/extract_points.R | 4 - R/fit_point_process.R | 13 +-- R/plot.rd_mar.R | 77 +++++++------------ R/plot.rd_pat.R | 77 +++++++------------ R/plot.rd_ras.R | 91 +---------------------- R/print.rd_mar.R | 2 R/print.rd_pat.R | 2 R/print.rd_ras.R | 2 R/randomize_raster.R | 7 + R/reconstruct_pattern.R | 12 ++- R/reconstruct_pattern_cluster.R | 12 ++- R/reconstruct_pattern_hetero.R | 12 ++- R/reconstruct_pattern_homo.R | 12 ++- R/reconstruct_pattern_marks.R | 12 ++- R/results_habitat_association.R | 14 ++- R/sample_randomized.R |only R/shar-package.R | 1 R/translate_raster.R | 7 + inst/doc/get_started.R | 8 +- inst/doc/get_started.Rmd | 29 ++++--- inst/doc/get_started.html | 38 +++++---- man/calculate_energy.Rd | 12 ++- man/classify_habitats.Rd | 24 +++--- man/create_neighbourhood.Rd | 2 man/estimate_pcf_fast.Rd | 14 ++- man/extract_points.Rd | 2 man/figures/README-plot-random_pattern-1.png |only man/fit_point_process.Rd | 11 +- man/plot.rd_mar.Rd | 12 ++- man/plot.rd_pat.Rd | 12 ++- man/randomize_raster.Rd | 5 - man/reconstruct_pattern.Rd | 12 ++- man/reconstruct_pattern_cluster.Rd | 12 ++- man/reconstruct_pattern_hetero.Rd | 12 ++- man/reconstruct_pattern_homo.Rd | 12 ++- man/reconstruct_pattern_marks.Rd | 12 ++- man/results_habitat_association.Rd | 12 +-- man/sample_randomized.Rd |only man/shar.Rd | 1 man/translate_raster.Rd | 5 - tests/testthat/Rplots.pdf |binary tests/testthat/test-list_to_randomized.R | 1 tests/testthat/test-plot_energy.R | 6 - tests/testthat/test-plot_rd_pat.R | 2 tests/testthat/test-print.R | 5 - tests/testthat/test-sample_randomized.R |only vignettes/get_started.Rmd | 29 ++++--- 55 files changed, 410 insertions(+), 419 deletions(-)
Title: An L1-Version of the Spectral Clustering
Description: Provides an l1-version of the spectral clustering algorithm devoted to robustly clustering highly perturbed graphs using l1-penalty. This algorithm is described with more details in the preprint C. Champion, M. Champion, M. Blazère, R. Burcelin and J.M. Loubes, "l1-spectral clustering algorithm: a robust spectral clustering using Lasso regularization" (2021).
Author: Camille Champion [aut],
Magali Champion [aut, cre]
Maintainer: Magali Champion <magali.champion@u-paris.fr>
Diff between l1spectral versions 0.99.4 dated 2021-10-20 and 0.99.5 dated 2022-01-04
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/FindNbrClusters.R | 9 ++++++++- R/PenOpt.R | 32 +++++++++++++++++++------------- R/l1_spectral.R | 1 + build/partial.rdb |binary 7 files changed, 40 insertions(+), 25 deletions(-)
More information about LexisNexisTools at CRAN
Permanent link
Title: Cognitive Mapping Tools Based on Coding of Textual Sources
Description: Functions for building cognitive maps based on qualitative data. Inputs are textual sources (articles, transcription of qualitative interviews of agents,...). These sources have been coded using relations and are linked to (i) a table describing the variables (or concepts) used for the coding and (ii) a table describing the sources (typology of agents, ...). Main outputs are Individual Cognitive Maps (ICM), Social Cognitive Maps (all sources or group of sources) and a list of quotes linked to relations. This package is linked to the work done during the PhD of Frederic M. Vanwindekens (CRA-W / UCL) hold the 13 of May 2014 at University of Louvain in collaboration with the Walloon Agricultural Research Centre (project MIMOSA, MOERMAN fund).
Author: Frédéric M. Vanwindekens [aut, cre]
(<https://orcid.org/0000-0002-9117-7543>),
Didier Stilmant [aut, ths],
Philippe V. Baret [aut, ths]
Maintainer: Frédéric M. Vanwindekens <f.vanwindekens@cra.wallonie.be>
Diff between cogmapr versions 0.9.2 dated 2021-11-20 and 0.9.3 dated 2022-01-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/cogmapr-comp.R | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Title: Bridge to System Package Manager
Description: Enables binary package installations on Linux distributions.
Provides functions to manage packages via the distribution's package
manager. Also provides transparent integration with R's install.packages()
and a fallback mechanism. When installed as a system package, interacts
with the system's package manager without requiring administrative
privileges via an integrated D-Bus service; otherwise, uses sudo.
Currently, the following backends are supported: DNF, APT, ALPM.
Author: Iñaki Ucar [aut, cph, cre] (<https://orcid.org/0000-0001-6403-5550>)
Maintainer: Iñaki Ucar <iucar@fedoraproject.org>
Diff between bspm versions 0.3.8 dated 2021-06-25 and 0.3.9 dated 2022-01-04
DESCRIPTION | 14 ++-- MD5 | 19 ++--- NEWS.md | 7 ++ R/bridge.R | 8 +- README.md | 132 +++++++++++++++++++++++++++++++++------ inst/service/backend/__init__.py | 2 inst/service/backend/_utils.py | 15 ++++ inst/service/backend/alpm.py |only inst/service/backend/apt.py | 28 +------- inst/service/backend/dnf.py | 1 man/bspm-package.Rd | 2 11 files changed, 165 insertions(+), 63 deletions(-)
Title: Combine Parameter Estimates via Parametric Bootstrap
Description: Propagate uncertainty from several estimates when combining these estimates via a function.
This is done by using the parametric bootstrap to simulate values from the distribution of each estimate to build up an empirical distribution of the combined parameter.
Finally either the percentile method is used or the highest density interval is chosen to derive a confidence interval for the combined parameter with the desired coverage.
Gaussian copulas are used for when parameters are assumed to be dependent / correlated.
References: Davison and Hinkley (1997,ISBN:0-521-57471-4) for the parametric bootstrap and percentile method, Gelman et al. (2014,ISBN:978-1-4398-4095-5) for the highest density interval, Stockdale et al. (2020)<doi:10.1016/j.jhep.2020.04.008> for an example of combining conditional prevalences.
Author: Marc Henrion [aut, cre] (<https://orcid.org/0000-0003-1242-839X>)
Maintainer: Marc Henrion <mhenrion@mlw.mw>
Diff between bootComb versions 1.0.2 dated 2021-07-12 and 1.1.1 dated 2022-01-04
DESCRIPTION | 10 ++-- MD5 | 16 +++--- NAMESPACE | 1 NEWS.md | 14 ++++++ R/bootComb.R | 103 ++++++++++++++++++++++++++++++++++++++++----- README.md | 28 +++++++++--- man/adjPrevSensSpecCI.Rd | 1 man/bootComb.Rd | 59 +++++++++++++++++++++++-- man/simScenPrevSensSpec.Rd | 2 9 files changed, 198 insertions(+), 36 deletions(-)
Title: Bayesian Aggregate Treatment Effects
Description: Running and comparing meta-analyses of data with hierarchical
Bayesian models in Stan, including convenience functions for formatting
data, plotting and pooling measures specific to meta-analysis. This implements many models
from Meager (2019) <doi:10.1257/app.20170299>.
Author: Witold Wiecek [cre, aut],
Rachael Meager [aut],
Brice Green [ctb] (predict(), loo_compare, many visuals),
Trustees of Columbia University [cph] (tools/make_cc.R)
Maintainer: Witold Wiecek <witold.wiecek@gmail.com>
Diff between baggr versions 0.6.9 dated 2021-09-02 and 0.6.18 dated 2022-01-04
baggr-0.6.18/baggr/DESCRIPTION | 11 baggr-0.6.18/baggr/MD5 | 120 +-- baggr-0.6.18/baggr/NAMESPACE | 6 baggr-0.6.18/baggr/NEWS.md | 41 + baggr-0.6.18/baggr/R/auto_prior.R | 73 + baggr-0.6.18/baggr/R/baggr.R | 85 +- baggr-0.6.18/baggr/R/baggr_compare.R | 145 ++- baggr-0.6.18/baggr/R/baggr_plot.R | 8 baggr-0.6.18/baggr/R/binary_to_individual.R | 57 + baggr-0.6.18/baggr/R/check_cols.R | 12 baggr-0.6.18/baggr/R/convert_inputs.R | 99 +- baggr-0.6.18/baggr/R/detect_input_type.R | 14 baggr-0.6.18/baggr/R/loocv.R | 94 +- baggr-0.6.18/baggr/R/names.R | 33 baggr-0.6.18/baggr/R/plot.R | 2 baggr-0.6.18/baggr/R/pooling_metrics.R | 153 ++- baggr-0.6.18/baggr/R/prepare_ma.R | 143 ++- baggr-0.6.18/baggr/R/prior_dist.R | 55 - baggr-0.6.18/baggr/inst/doc/baggr.Rmd | 5 baggr-0.6.18/baggr/inst/doc/baggr.html | 110 +- baggr-0.6.18/baggr/inst/doc/baggr_binary.R | 27 baggr-0.6.18/baggr/inst/doc/baggr_binary.Rmd | 61 - baggr-0.6.18/baggr/inst/doc/baggr_binary.html | 462 ++++++------ baggr-0.6.18/baggr/inst/stan/functions/prior_increment.stan | 10 baggr-0.6.18/baggr/inst/stan/logit.stan | 9 baggr-0.6.18/baggr/inst/stan/mutau.stan | 9 baggr-0.6.18/baggr/inst/stan/rubin_full.stan | 12 baggr-0.6.18/baggr/man/baggr.Rd | 29 baggr-0.6.18/baggr/man/baggr_compare.Rd | 7 baggr-0.6.18/baggr/man/binary_to_individual.Rd | 92 +- baggr-0.6.18/baggr/man/forest_plot.Rd | 104 +- baggr-0.6.18/baggr/man/get_order.Rd | 42 - baggr-0.6.18/baggr/man/loocv.Rd | 6 baggr-0.6.18/baggr/man/mutau_cor.Rd | 42 - baggr-0.6.18/baggr/man/plot.baggr.Rd | 46 - baggr-0.6.18/baggr/man/plot.baggr_compare.Rd | 17 baggr-0.6.18/baggr/man/plot.baggr_cv.Rd |only baggr-0.6.18/baggr/man/pooling.Rd | 124 ++- baggr-0.6.18/baggr/man/prepare_ma.Rd | 199 ++--- baggr-0.6.18/baggr/man/print.baggr.Rd | 56 - baggr-0.6.18/baggr/man/print.baggr_cv.Rd | 36 baggr-0.6.18/baggr/man/priors.Rd | 36 baggr-0.6.18/baggr/man/single_comp_plot.Rd | 73 + baggr-0.6.18/baggr/man/treatment_effect.Rd | 74 - baggr-0.6.18/baggr/src/RcppExports.gcno |only baggr-0.6.18/baggr/src/stanExports_logit.gcno |binary baggr-0.6.18/baggr/src/stanExports_logit.h | 295 ++++--- baggr-0.6.18/baggr/src/stanExports_mutau.h | 241 +++--- baggr-0.6.18/baggr/src/stanExports_mutau_full.h | 268 +++--- baggr-0.6.18/baggr/src/stanExports_rubin.h | 206 ++--- baggr-0.6.18/baggr/src/stanExports_rubin_full.h | 355 ++++----- baggr-0.6.18/baggr/tests/testthat/Rplots.pdf |binary baggr-0.6.18/baggr/tests/testthat/test_binary.R | 43 + baggr-0.6.18/baggr/tests/testthat/test_full.R | 54 + baggr-0.6.18/baggr/tests/testthat/test_helpers.R | 13 baggr-0.6.18/baggr/tests/testthat/test_mutau.R | 23 baggr-0.6.18/baggr/tests/testthat/test_prior.R | 3 baggr-0.6.18/baggr/tests/testthat/test_rubin.R | 27 baggr-0.6.18/baggr/vignettes/baggr.Rmd | 5 baggr-0.6.18/baggr/vignettes/baggr.bib | 12 baggr-0.6.18/baggr/vignettes/baggr_binary.Rmd | 61 - baggr-0.6.9/baggr/R/summarise_quantiles_data.R |only baggr-0.6.9/baggr/man/summarise_quantiles_data.Rd |only 63 files changed, 2617 insertions(+), 1828 deletions(-)
Title: Develop Text Prediction Models Based on N-Grams
Description: A framework for developing n-gram models for text prediction.
It provides data cleaning, data sampling, extracting tokens from text,
model generation, model evaluation and word prediction. For information on how n-gram models
work we referred to: "Speech and Language Processing"
<https://web.stanford.edu/~jurafsky/slp3/3.pdf>. For optimizing R code and
using R6 classes we referred to "Advanced R"
<https://adv-r.hadley.nz/r6.html>. For writing R extensions we referred to
"R Packages", <https://r-pkgs.org/index.html>.
Author: Nadir Latif [aut, cre] (<https://orcid.org/0000-0002-7543-7405>)
Maintainer: Nadir Latif <pakjiddat@gmail.com>
Diff between wordpredictor versions 0.0.2 dated 2021-06-19 and 0.0.3 dated 2022-01-04
wordpredictor-0.0.2/wordpredictor/vignettes/man |only wordpredictor-0.0.3/wordpredictor/DESCRIPTION | 8 wordpredictor-0.0.3/wordpredictor/MD5 | 44 wordpredictor-0.0.3/wordpredictor/NEWS.md | 6 wordpredictor-0.0.3/wordpredictor/R/env-manager.R | 2 wordpredictor-0.0.3/wordpredictor/README.md | 26 wordpredictor-0.0.3/wordpredictor/build/vignette.rds |binary wordpredictor-0.0.3/wordpredictor/inst/doc/features.R | 38 wordpredictor-0.0.3/wordpredictor/inst/doc/features.Rmd | 38 wordpredictor-0.0.3/wordpredictor/inst/doc/features.html | 822 +++------- wordpredictor-0.0.3/wordpredictor/inst/doc/overview.R | 12 wordpredictor-0.0.3/wordpredictor/inst/doc/overview.Rmd | 12 wordpredictor-0.0.3/wordpredictor/inst/doc/overview.html | 455 +---- wordpredictor-0.0.3/wordpredictor/man/figures/README-analyze-ngrams-1-1.png |binary wordpredictor-0.0.3/wordpredictor/man/figures/README-analyze-ngrams-2-1.png |binary wordpredictor-0.0.3/wordpredictor/man/wordpredictor-package.Rd | 9 wordpredictor-0.0.3/wordpredictor/vignettes/features.Rmd | 38 wordpredictor-0.0.3/wordpredictor/vignettes/overview.Rmd | 12 wordpredictor-0.0.3/wordpredictor/vignettes/reference |only 19 files changed, 587 insertions(+), 935 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt'. Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Hothorn, 2019, <arxiv:1910.09219>).
Multivariate conditional transformation models (<arxiv:1906.03151>) can be fitted as well.
Author: Torsten Hothorn [aut, cre] (<https://orcid.org/0000-0001-8301-0471>),
Luisa Barbanti [aut],
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 0.6-2 dated 2021-12-07 and 0.6-3 dated 2022-01-04
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/methods.R | 4 +++- R/tram.R | 11 ++++++++--- build/partial.rdb |binary inst/NEWS.Rd | 7 +++++++ inst/doc/mtram.pdf |binary inst/doc/tram.pdf |binary man/Coxph.Rd | 5 +++-- tests/bugfixes.R | 9 +++++++-- 10 files changed, 41 insertions(+), 21 deletions(-)
Title: Serializable Representations
Description: String and binary representations of objects for several formats /
mime types.
Author: Philipp Angerer [aut, cre] (<https://orcid.org/0000-0002-0369-2888>),
Thomas Kluyver [aut],
Jan Schulz [aut],
abielr [ctb],
Denilson Figueiredo de Sa [ctb],
Jim Hester [ctb],
karldw [ctb],
Dave Foster [ctb],
Carson Sievert [ctb]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between repr versions 1.1.3 dated 2021-01-21 and 1.1.4 dated 2022-01-04
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/repr_help_files_with_topic.r | 4 ++-- README.md | 6 +++--- 4 files changed, 12 insertions(+), 13 deletions(-)
Title: Flexible Optimization of Complex Loss Functions with State and
Parameter Space Constraints
Description: Flexible optimizer with numerous input specifications for detailed
parameterisation. Designed for complex loss functions with state and
parameter space constraints. Visualization tools for validation and analysis
of the convergence are included.
Author: Kai Husmann [aut, cre],
Alexander Lange [aut],
Nordwestdeutsche Forstliche Versuchsanstalt (NW-FVA) [cph, fnd]
Maintainer: Kai Husmann <kai.husmann@uni-goettingen.de>
Diff between optimization versions 1.0-7 dated 2017-10-24 and 1.0-8 dated 2022-01-04
DESCRIPTION | 29 +++++++++++++++++++++-------- MD5 | 22 +++++++++++----------- NEWS.md | 7 +++++-- R/optim_nm.R | 4 ++-- R/optim_sa.R | 6 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 2 +- man/optim_nm.Rd | 4 ++-- man/optim_sa.Rd | 4 ++-- man/optimization-package.Rd | 4 ++-- src/optim_sa.cpp | 6 +++--- 12 files changed, 52 insertions(+), 36 deletions(-)
Title: 'NoSQL' Database Connector
Description: Simplified document database access and manipulation,
providing a common API across supported 'NoSQL' databases
'Elasticsearch', 'CouchDB', 'MongoDB' as well as
'SQLite/JSON1' and 'PostgreSQL'.
Author: Ralf Herold [aut, cre] (<https://orcid.org/0000-0002-8148-6748>),
Scott Chamberlain [aut] (<https://orcid.org/0000-0003-1444-9135>),
Rich FitzJohn [aut],
Jeroen Ooms [aut]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between nodbi versions 0.6.0 dated 2021-12-01 and 0.7.0 dated 2022-01-04
DESCRIPTION | 6 - MD5 | 22 ++-- NEWS.md | 11 ++ R/create.R | 197 +++++++++++++++++++++++++++++------------- R/delete.R | 24 ++--- R/get.R | 16 +-- R/query.R | 7 + R/update.R | 5 - man/docdb_create.Rd | 3 man/docdb_update.Rd | 3 tests/testthat/core-nodbi.R | 44 ++++++++- tests/testthat/test-couchdb.R | 6 - 12 files changed, 237 insertions(+), 107 deletions(-)
Title: Two-Locus Family-Based Association Test with Polytomous Outcome
Description: Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models
defined by some design matrix.
Author: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca> and Jordie Croteau
<jorcroteau@gmail.com>
Maintainer: Alexandre BUREAU <alexandre.bureau@msp.ulaval.ca>
Diff between fat2Lpoly versions 1.2.4 dated 2019-12-18 and 1.2.5 dated 2022-01-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/read.merlin.files.R | 2 +- data/fat2Lpoly.allSNPs.rda |binary data/ped.x.all.rda |binary 5 files changed, 9 insertions(+), 9 deletions(-)
Title: Estimating and Mapping Disaggregated Indicators
Description: Functions that support estimating, assessing and mapping regional
disaggregated indicators. So far, estimation methods comprise direct estimation,
the model-based unit-level approach Empirical Best Prediction (see "Small area
estimation of poverty indicators" by Molina and Rao (2010) <doi:10.1002/cjs.10051>),
the area-level model (see "Estimates of income for small places: An
application of James-Stein procedures to Census Data" by Fay and Herriot (1979)
<doi:10.1080/01621459.1979.10482505>) and various extensions of it (adjusted variance
estimation methods, log and arcsin transformation, spatial, robust and measurement
error models), as well as their precision estimates. The assessment of the used model
is supported by a summary and diagnostic plots. For a suitable presentation of
estimates, map plots can be easily created. Furthermore, results can easily be
exported to excel. For a detailed description of the package and the methods used
see "The R Package emdi for Estimating and Mapping Regionally Disaggregated Indicators"
by Kreutzmann et al. (2019) <doi:10.18637/jss.v091.i07> and the second package vignette
"A Framework for Producing Small Area Estimates Based on Area-Level Models in R".
Author: Sylvia Harmening [aut],
Ann-Kristin Kreutzmann [aut],
Soeren Pannier [aut, cre],
Felix Skarke [aut],
Natalia Rojas-Perilla [aut],
Nicola Salvati [aut],
Timo Schmid [aut],
Matthias Templ [aut],
Nikos Tzavidis [aut],
Nora Würz [aut]
Maintainer: Soeren Pannier <soeren.pannier@fu-berlin.de>
Diff between emdi versions 2.1.0 dated 2021-07-07 and 2.1.1 dated 2022-01-04
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NEWS.md | 5 ++++- R/transformation_functions.R | 2 +- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: Load Estimation of River Compounds with Different Methods
Description: Implements several of the most popular load estimation procedures, including averaging methods, ratio estimators and regression methods. The package provides an easy-to-use tool to rapidly calculate the load for various compounds and to compare different methods. The package also supplies additional functions to easily organize and analyze the data.
Author: Veronica Nava [aut, cre], Martina Patelli [ctb], Marco Rotiroti [ctb], Barbara Leoni [ctb]
Maintainer: Veronica Nava <veronicanava245@gmail.com>
Diff between RiverLoad versions 1.0.2 dated 2019-12-10 and 1.0.3 dated 2022-01-04
DESCRIPTION | 9 MD5 | 22 +- R/beale.period.R | 312 +++++++++++++++++----------------- R/beale.ratio.R | 346 ++++++++++++++++++------------------- R/ferguson.R | 242 +++++++++++++------------- R/ferguson.period.R | 476 ++++++++++++++++++++++++++-------------------------- R/method1.R | 280 +++++++++++++++--------------- R/method4.R | 2 R/rating.R | 178 +++++++++---------- R/rating.period.R | 384 ++++++++++++++++++++--------------------- man/conc.data2.Rd | 2 man/flow.data2.Rd | 2 12 files changed, 1128 insertions(+), 1127 deletions(-)
Title: Features Extracted from Position Specific Scoring Matrix (PSSM)
Description: Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some
of these features are described in Zahiri, J., et al.(2013)
<DOI:10.1016/j.ygeno.2013.05.006>,
Saini, H., et al.(2016)
<DOI:10.17706/jsw.11.8.756-767>,
Ding, S., et al.(2014)
<DOI:10.1016/j.biochi.2013.09.013>,
Cheng, C.W., et al.(2008)
<DOI:10.1186/1471-2105-9-S12-S6>,
Juan, E.Y., et al.(2009)
<DOI:10.1109/CISIS.2009.194>.
Author: Javad zahiri [aut],
Alireza mohammadi [aut, cre],
Saber mohammadi [aut]
Maintainer: Alireza mohammadi <alireza691111@gmail.com>
Diff between PSSMCOOL versions 0.2.3 dated 2021-12-10 and 0.2.4 dated 2022-01-04
PSSMCOOL-0.2.3/PSSMCOOL/R/AA_EDP_MEDP.R |only PSSMCOOL-0.2.3/PSSMCOOL/R/AAtrigrame_pssm.R |only PSSMCOOL-0.2.3/PSSMCOOL/R/AC.R |only PSSMCOOL-0.2.3/PSSMCOOL/R/CC.R |only PSSMCOOL-0.2.3/PSSMCOOL/R/DPC-PSSM.R |only PSSMCOOL-0.2.3/PSSMCOOL/R/PSSMAC.R |only PSSMCOOL-0.2.3/PSSMCOOL/man/AATP_TPCC.Rd |only PSSMCOOL-0.2.3/PSSMCOOL/man/DPC_PSSM.Rd |only PSSMCOOL-0.2.3/PSSMCOOL/man/EDP_MEDP.Rd |only PSSMCOOL-0.2.3/PSSMCOOL/man/PSSMAC.Rd |only PSSMCOOL-0.2.3/PSSMCOOL/man/k_seperated_bigrame.Rd |only PSSMCOOL-0.2.3/PSSMCOOL/tests/testthat/test-AAtrigrame_pssm.R |only PSSMCOOL-0.2.3/PSSMCOOL/tests/testthat/test-AC.R |only PSSMCOOL-0.2.3/PSSMCOOL/tests/testthat/test-CC.R |only PSSMCOOL-0.2.3/PSSMCOOL/tests/testthat/test-EDP_MEDP.R |only PSSMCOOL-0.2.3/PSSMCOOL/tests/testthat/test-PSSMAC.R |only PSSMCOOL-0.2.4/PSSMCOOL/DESCRIPTION | 6 PSSMCOOL-0.2.4/PSSMCOOL/MD5 | 172 ++-- PSSMCOOL-0.2.4/PSSMCOOL/NAMESPACE | 95 +- PSSMCOOL-0.2.4/PSSMCOOL/R/AAC_PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/AADP_PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/AATP_TPC.R | 25 PSSMCOOL-0.2.4/PSSMCOOL/R/AB_PSSM.R | 51 - PSSMCOOL-0.2.4/PSSMCOOL/R/DISSULFID.R | 8 PSSMCOOL-0.2.4/PSSMCOOL/R/DMACA-PSSM.R | 6 PSSMCOOL-0.2.4/PSSMCOOL/R/DPC_PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/DP_PSSM.R | 8 PSSMCOOL-0.2.4/PSSMCOOL/R/DWTPSSM.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/EDP_EEDP_MEDP.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/FPSSM.R | 6 PSSMCOOL-0.2.4/PSSMCOOL/R/Grey_PSSM_PseAAC.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/MBMGAC_PSSM.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/PSSM400.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/PSSM_AC.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/PSSM_BLOCK.R | 4 PSSMCOOL-0.2.4/PSSMCOOL/R/PSSM_CC.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/PSSM_COMPOSITION.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/RPM-PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/R/RPSSM.R | 4 PSSMCOOL-0.2.4/PSSMCOOL/R/SCSH.R | 4 PSSMCOOL-0.2.4/PSSMCOOL/R/consunsus.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/cs_pssm.R | 5 PSSMCOOL-0.2.4/PSSMCOOL/R/discrete_cosin.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/k_seperated.R | 8 PSSMCOOL-0.2.4/PSSMCOOL/R/kiderafactor.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/lpc_pssm.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/pse_pssm.R | 6 PSSMCOOL-0.2.4/PSSMCOOL/R/pssm_sd.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/single_average.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/smooted_pssm.R | 80 + PSSMCOOL-0.2.4/PSSMCOOL/R/somaPssm.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/svd-pssm.R | 2 PSSMCOOL-0.2.4/PSSMCOOL/R/trigrame_pssm.R |only PSSMCOOL-0.2.4/PSSMCOOL/inst/doc/PSSMCOOL.R | 126 +- PSSMCOOL-0.2.4/PSSMCOOL/inst/doc/PSSMCOOL.Rmd | 166 ++- PSSMCOOL-0.2.4/PSSMCOOL/inst/doc/PSSMCOOL.html | 424 +++++----- PSSMCOOL-0.2.4/PSSMCOOL/man/AATP_TPC.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/AB_PSSM.Rd | 13 PSSMCOOL-0.2.4/PSSMCOOL/man/CS_PSe_PSSM.Rd | 5 PSSMCOOL-0.2.4/PSSMCOOL/man/DFMCA_PSSM.Rd | 6 PSSMCOOL-0.2.4/PSSMCOOL/man/DP_PSSM.Rd | 6 PSSMCOOL-0.2.4/PSSMCOOL/man/Discrete_Cosine_Transform.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/EDP_EEDP_MEDP.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/FPSSM.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/man/LPC_PSSM.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/MBMGACPSSM.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/PSSMBLOCK.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/man/PSSMCOOL-package.Rd | 11 PSSMCOOL-0.2.4/PSSMCOOL/man/PSSM_SD.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/RPM_PSSM.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/SOMA_PSSM.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/SVD_PSSM.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/aac_pssm.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/aadp_pssm.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/consunsus_sequence.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/disulfid.Rd | 8 PSSMCOOL-0.2.4/PSSMCOOL/man/dpc_pssm.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/dwt_PSSM.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/grey_pssm_pseAAC.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/k_separated_bigrams_pssm.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/kiderafactor.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/pse_pssm.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/man/pssm400.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/pssm_ac.Rd | 9 PSSMCOOL-0.2.4/PSSMCOOL/man/pssm_cc.Rd | 14 PSSMCOOL-0.2.4/PSSMCOOL/man/pssm_composition.Rd |only PSSMCOOL-0.2.4/PSSMCOOL/man/rpssm.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/scsh2.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/man/single_Average.Rd | 2 PSSMCOOL-0.2.4/PSSMCOOL/man/smoothed_PSSM.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/man/trigrame_pssm.Rd | 4 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-AAC_PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-AADP_PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-AATP-TPC.R | 8 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-AB_PSSM.R | 3 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-DPC_PSSM.R | 8 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-DP_PSSM.R | 4 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-EDP_EEDP_MEDP.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-PSSM_AC.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-PSSM_CC.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-PSSM_COMPOSITION.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-RPM-PSSM.R |only PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-k_seperated.R | 6 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-pse_pssm.R | 4 PSSMCOOL-0.2.4/PSSMCOOL/tests/testthat/test-trigrame_pssm.R |only PSSMCOOL-0.2.4/PSSMCOOL/vignettes/PSSMCOOL.Rmd | 166 ++- PSSMCOOL-0.2.4/PSSMCOOL/vignettes/figures/AB-PSSM.jpg |binary PSSMCOOL-0.2.4/PSSMCOOL/vignettes/figures/AB-PSSM2.jpg |only 108 files changed, 815 insertions(+), 734 deletions(-)
Title: Easily Source Publicly Available Data on Derivatives
Description: Post Global Financial Crisis derivatives reforms have lifted
the veil off over-the-counter (OTC) derivative markets. Swap Execution
Facilities (SEFs) and Swap Data Repositories (SDRs) now publish data
on swaps that are traded on or reported to those facilities
(respectively). This package provides you the ability to get this data
from supported sources.
Author: Imanuel Costigan [aut, cre]
Maintainer: Imanuel Costigan <i.costigan@me.com>
Diff between dataonderivatives versions 0.3.1 dated 2018-02-10 and 0.4.0 dated 2022-01-04
dataonderivatives-0.3.1/dataonderivatives/R/bsdr.R |only dataonderivatives-0.3.1/dataonderivatives/man/bsdr.Rd |only dataonderivatives-0.3.1/dataonderivatives/tests/testthat/test-bsdr.R |only dataonderivatives-0.4.0/dataonderivatives/DESCRIPTION | 39 - dataonderivatives-0.4.0/dataonderivatives/MD5 | 31 - dataonderivatives-0.4.0/dataonderivatives/NAMESPACE | 4 dataonderivatives-0.4.0/dataonderivatives/NEWS.md | 25 dataonderivatives-0.4.0/dataonderivatives/R/bsef.R | 101 +-- dataonderivatives-0.4.0/dataonderivatives/R/cme.R | 178 +++--- dataonderivatives-0.4.0/dataonderivatives/R/ddr.R | 89 +-- dataonderivatives-0.4.0/dataonderivatives/R/utils.R | 17 dataonderivatives-0.4.0/dataonderivatives/README.md | 255 +++++----- dataonderivatives-0.4.0/dataonderivatives/man/bsef.Rd | 14 dataonderivatives-0.4.0/dataonderivatives/man/cme.Rd | 41 - dataonderivatives-0.4.0/dataonderivatives/man/ddr.Rd | 23 dataonderivatives-0.4.0/dataonderivatives/tests/testthat/test-bsef.R | 5 dataonderivatives-0.4.0/dataonderivatives/tests/testthat/test-cme.R | 22 dataonderivatives-0.4.0/dataonderivatives/tests/testthat/test-ddr.R | 37 - 18 files changed, 446 insertions(+), 435 deletions(-)
More information about dataonderivatives at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-18 1.26
2021-02-18 1.27
2021-01-11 1.25
Title: Data Unit Testing for R
Description: Test your data! An extension of the 'testthat' unit testing
framework with a family of functions and reporting tools for checking
and validating data frames.
Author: Danny Smith [aut, cre],
Kinto Behr [aut],
The Social Research Centre [cph]
Maintainer: Danny Smith <danny@gorcha.org>
Diff between testdat versions 0.3.0 dated 2021-11-12 and 0.4.0 dated 2022-01-04
DESCRIPTION | 6 ++--- MD5 | 37 ++++++++++++++++----------------- NAMESPACE | 1 NEWS.md | 21 ++++++++++++++++++ R/deprec-expect.R | 1 R/expect-conditional.R | 2 + R/expect-datacomp.R | 2 + R/expect-exclusive.R | 1 R/expect-generic.R | 1 R/expect-proportion.R | 3 ++ R/expect-unique.R | 5 +++- R/expectation.R | 18 ++++++++++++++++ R/reporter-zzz.R | 23 ++++++++++++++++---- inst/doc/testdat.html | 4 +-- man/global-data.Rd | 16 +++++++++++--- tests/testthat/test-expect-unique.R | 10 ++++++++ tests/testthat/test-expect_exclusive.R | 2 - tests/testthat/test-pipe.R |only tests/testthat/test-reporter_excel.R | 2 - tests/testthat/test-testdata.R | 3 +- 20 files changed, 123 insertions(+), 35 deletions(-)
Title: Building and Estimating Structural Equation Models
Description: A powerful, easy to syntax for specifying and estimating complex
Structural Equation Models. Models can be estimated using Partial
Least Squares Path Modeling or Covariance-Based Structural Equation
Modeling or covariance based Confirmatory Factor Analysis. Methods described in Ray, Danks, and Valdez (2021).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre],
André Calero Valdez [aut],
Juan Manuel Velasquez Estrada [ctb],
James Uanhoro [ctb],
Johannes Nakayama [ctb],
Lilian Koyan [ctb],
Laura Burbach [ctb],
Arturo Heynar Cano Bejar [ctb],
Susanne Adler [ctb]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 2.2.1 dated 2021-09-02 and 2.3.0 dated 2022-01-04
DESCRIPTION | 10 - MD5 | 34 ++-- NAMESPACE | 4 R/compute_metrics.R | 18 +- R/estimate_pls.R | 79 +++++++++ R/estimate_pls_mga.R |only R/report_summary.R | 16 ++ README.md | 36 ++-- build/vignette.rds |binary demo/00Index | 1 demo/seminr-pls-mga.R |only inst/doc/SEMinR.html | 224 ++-------------------------- man/cor_rsq.Rd |only man/estimate_pls_mga.Rd |only man/figures/model.png |binary man/figures/model2.png |binary man/figures/model_pls.png |binary man/print.seminr_pls_mga.Rd |only man/rerun.Rd |only man/rerun.pls_model.Rd |only tests/fixtures/V_3_6_0/pls-mga-mobi-100.RDS |only tests/testthat/test-pls-mga.R |only tests/testthat/test-rerun.R |only 23 files changed, 179 insertions(+), 243 deletions(-)
Title: Variable Selection in Partial Least Squares
Description: Interfaces and methods for variable selection in Partial Least
Squares. The methods include filter methods, wrapper methods and embedded
methods. Both regression and classification is supported.
Author: Kristian Hovde Liland [aut, cre]
(<https://orcid.org/0000-0001-6468-9423>),
Tahir Mehmood [ctb],
Solve Sæbø [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between plsVarSel versions 0.9.6 dated 2020-04-03 and 0.9.7 dated 2022-01-04
DESCRIPTION | 31 ++++++++++++++++++++++++------- MD5 | 16 ++++++++-------- NEWS | 4 ++++ R/filters.R | 2 ++ R/plsVarSel.R | 2 ++ R/utilities.R | 2 ++ man/VIP.Rd | 2 ++ man/plsVarSel.Rd | 2 ++ man/simulate_classes.Rd | 2 ++ 9 files changed, 48 insertions(+), 15 deletions(-)
Title: 'Jupyter' Display Machinery
Description: An interface to the rich display capabilities of 'Jupyter' front-ends (e.g. 'Jupyter Notebook') <https://jupyter.org>.
Designed to be used from a running 'IRkernel' session <https://irkernel.github.io>.
Author: Thomas Kluyver [aut, cph],
Philipp Angerer [aut, cph, cre]
(<https://orcid.org/0000-0002-0369-2888>),
Jan Schulz [aut, cph]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between IRdisplay versions 1.0 dated 2021-01-20 and 1.1 dated 2022-01-04
DESCRIPTION | 9 ++++----- MD5 | 14 +++++++------- NAMESPACE | 1 + R/display.r | 20 ++++++++++++++++++-- R/options.r | 20 +++++++++++++------- README.md | 6 +++--- man/IRdisplay-options.Rd | 10 +++++++--- man/publish_mimebundle.Rd | 23 +++++++++++++++++++++-- 8 files changed, 74 insertions(+), 29 deletions(-)
Title: Easy Data Wrangling
Description: A lightweight package to easily manipulate, clean, transform,
and prepare your data for analysis. It also forms the data wrangling
backend for the packages in the 'easystats' ecosystem.
Author: Dominique Makowski [aut] (<https://orcid.org/0000-0001-5375-9967>,
@Dom_Makowski),
Daniel Lüdecke [aut] (<https://orcid.org/0000-0002-8895-3206>,
@strengejacke),
Indrajeet Patil [aut, cre] (<https://orcid.org/0000-0003-1995-6531>,
@patilindrajeets),
Mattan S. Ben-Shachar [aut] (<https://orcid.org/0000-0002-4287-4801>),
Brenton M. Wiernik [aut] (<https://orcid.org/0000-0001-9560-6336>,
@bmwiernik)
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between datawizard versions 0.2.1 dated 2021-10-04 and 0.2.2 dated 2022-01-04
datawizard-0.2.1/datawizard/R/utils_standardize.R |only datawizard-0.2.2/datawizard/DESCRIPTION | 60 datawizard-0.2.2/datawizard/MD5 | 60 datawizard-0.2.2/datawizard/NAMESPACE | 5 datawizard-0.2.2/datawizard/NEWS.md | 24 datawizard-0.2.2/datawizard/R/center.R | 318 +--- datawizard-0.2.2/datawizard/R/data_extract.R |only datawizard-0.2.2/datawizard/R/data_findcols.R | 4 datawizard-0.2.2/datawizard/R/reshape_ci.R | 36 datawizard-0.2.2/datawizard/R/standardize.R | 355 +--- datawizard-0.2.2/datawizard/R/unstandardize.R | 31 datawizard-0.2.2/datawizard/R/utils_standardize_center.R |only datawizard-0.2.2/datawizard/README.md | 1 datawizard-0.2.2/datawizard/build/vignette.rds |binary datawizard-0.2.2/datawizard/inst/WORDLIST | 1 datawizard-0.2.2/datawizard/inst/doc/demean.R | 414 ++--- datawizard-0.2.2/datawizard/inst/doc/demean.Rmd | 4 datawizard-0.2.2/datawizard/inst/doc/demean.html | 430 +++++ datawizard-0.2.2/datawizard/inst/doc/standardize_data.R | 275 ++- datawizard-0.2.2/datawizard/inst/doc/standardize_data.Rmd | 108 + datawizard-0.2.2/datawizard/inst/doc/standardize_data.html | 768 +++++++--- datawizard-0.2.2/datawizard/man/center.Rd | 81 - datawizard-0.2.2/datawizard/man/data_extract.Rd |only datawizard-0.2.2/datawizard/man/figures/card.png |only datawizard-0.2.2/datawizard/man/figures/logo.png |binary datawizard-0.2.2/datawizard/man/reshape_ci.Rd | 12 datawizard-0.2.2/datawizard/man/standardize.Rd | 86 - datawizard-0.2.2/datawizard/man/visualisation_recipe.Rd | 2 datawizard-0.2.2/datawizard/tests/testthat/test-center.R | 32 datawizard-0.2.2/datawizard/tests/testthat/test-extract.R |only datawizard-0.2.2/datawizard/tests/testthat/test-standardize-data.R | 42 datawizard-0.2.2/datawizard/tests/testthat/test-std_center.R |only datawizard-0.2.2/datawizard/tests/testthat/test-std_center_scale_args.R |only datawizard-0.2.2/datawizard/vignettes/demean.Rmd | 4 datawizard-0.2.2/datawizard/vignettes/standardize_data.Rmd | 108 + 35 files changed, 2148 insertions(+), 1113 deletions(-)
Title: Generate Citation File Format ('cff') Metadata for R Packages
Description: The Citation File Format version 1.2.0
<doi:10.5281/zenodo.5171937> is a human and machine readable file
format which provides citation metadata for software. This package
provides core utilities to generate and validate this metadata.
Author: Diego Hernangómez [aut, cre, cph]
(<https://orcid.org/0000-0001-8457-4658>),
João Martins [rev] (<https://orcid.org/0000-0001-7961-4280>),
Scott Chamberlain [rev] (<https://orcid.org/0000-0003-1444-9135>)
Maintainer: Diego Hernangómez <diego.hernangomezherrero@gmail.com>
Diff between cffr versions 0.1.1 dated 2021-11-11 and 0.2.0 dated 2022-01-04
cffr-0.1.1/cffr/vignettes/bibtex.bib |only cffr-0.1.1/cffr/vignettes/paper.bib |only cffr-0.2.0/cffr/DESCRIPTION | 8 cffr-0.2.0/cffr/MD5 | 148 + cffr-0.2.0/cffr/NAMESPACE | 11 cffr-0.2.0/cffr/NEWS.md | 32 cffr-0.2.0/cffr/R/assertions.R | 182 +- cffr-0.2.0/cffr/R/cff_create.R | 158 ++ cffr-0.2.0/cffr/R/cff_extract_to_bibtex.R |only cffr-0.2.0/cffr/R/cff_gha_update.R | 2 cffr-0.2.0/cffr/R/cff_git_hook.R |only cffr-0.2.0/cffr/R/cff_parse_citation.R | 606 +++++-- cffr-0.2.0/cffr/R/cff_parse_person.R | 114 + cffr-0.2.0/cffr/R/cff_to_bibtex.R |only cffr-0.2.0/cffr/R/cff_write.R | 4 cffr-0.2.0/cffr/R/cffr-package.R | 24 cffr-0.2.0/cffr/R/parse_citation.R | 103 + cffr-0.2.0/cffr/R/parse_description.R | 38 cffr-0.2.0/cffr/R/utils-bibtex.R |only cffr-0.2.0/cffr/R/utils-persons.R |only cffr-0.2.0/cffr/R/utils-schema.R | 1 cffr-0.2.0/cffr/R/write_bib.R |only cffr-0.2.0/cffr/README.md | 536 ++++++ cffr-0.2.0/cffr/build/partial.rdb |only cffr-0.2.0/cffr/build/vignette.rds |binary cffr-0.2.0/cffr/inst/CITATION | 37 cffr-0.2.0/cffr/inst/REFERENCES.bib |only cffr-0.2.0/cffr/inst/WORDLIST | 50 cffr-0.2.0/cffr/inst/bash |only cffr-0.2.0/cffr/inst/doc/bibtex_cff.R |only cffr-0.2.0/cffr/inst/doc/bibtex_cff.Rmd |only cffr-0.2.0/cffr/inst/doc/bibtex_cff.html |only cffr-0.2.0/cffr/inst/doc/cffr.R | 22 cffr-0.2.0/cffr/inst/doc/cffr.Rmd | 559 +++---- cffr-0.2.0/cffr/inst/doc/cffr.html | 545 +++---- cffr-0.2.0/cffr/inst/doc/crosswalk.R | 50 cffr-0.2.0/cffr/inst/doc/crosswalk.Rmd | 322 ++-- cffr-0.2.0/cffr/inst/doc/crosswalk.html | 766 ++++++++-- cffr-0.2.0/cffr/inst/doc/paper.Rmd | 7 cffr-0.2.0/cffr/inst/doc/paper.html | 18 cffr-0.2.0/cffr/inst/examples/preferred-citation-book-missing.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-book.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-conference-paper-2.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-conference-paper-missing.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-conference-paper.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-manual.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-no-month.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-no-vol.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-pamphlet.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-report-no-affiliation.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-report-no-institution.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-report.cff |only cffr-0.2.0/cffr/inst/examples/preferred-citation-unpublished.cff |only cffr-0.2.0/cffr/inst/examples/reprozip.cff |only cffr-0.2.0/cffr/inst/examples/smith-et-al.cff |only cffr-0.2.0/cffr/inst/examples/tidyverse-joss-paper.cff |only cffr-0.2.0/cffr/inst/examples/tidyverse-software.cff |only cffr-0.2.0/cffr/inst/extdata/bibtex_field_entry.csv |only cffr-0.2.0/cffr/man/cff_create.Rd | 11 cffr-0.2.0/cffr/man/cff_extract_to_bibtex.Rd |only cffr-0.2.0/cffr/man/cff_gha_update.Rd | 5 cffr-0.2.0/cffr/man/cff_git_hook.Rd |only cffr-0.2.0/cffr/man/cff_parse_citation.Rd | 40 cffr-0.2.0/cffr/man/cff_parse_person.Rd | 40 cffr-0.2.0/cffr/man/cff_to_bibtex.Rd |only cffr-0.2.0/cffr/man/cff_write.Rd | 4 cffr-0.2.0/cffr/man/encoded_utf_to_latex.Rd |only cffr-0.2.0/cffr/man/figures/lifecycle-experimental.svg |only cffr-0.2.0/cffr/man/write_bib.Rd |only cffr-0.2.0/cffr/tests/testthat/_snaps/bibtex-check-ruby.md |only cffr-0.2.0/cffr/tests/testthat/_snaps/bibtex2cff.md |only cffr-0.2.0/cffr/tests/testthat/_snaps/cff_create.md | 2 cffr-0.2.0/cffr/tests/testthat/_snaps/cff_description.md | 14 cffr-0.2.0/cffr/tests/testthat/_snaps/cff_parse_citation.md | 140 - cffr-0.2.0/cffr/tests/testthat/_snaps/cff_parse_person.md | 34 cffr-0.2.0/cffr/tests/testthat/_snaps/cff_to_bibtex.md |only cffr-0.2.0/cffr/tests/testthat/_snaps/cff_write.md | 6 cffr-0.2.0/cffr/tests/testthat/_snaps/encoding.md | 10 cffr-0.2.0/cffr/tests/testthat/_snaps/merge_desc_cit.md | 42 cffr-0.2.0/cffr/tests/testthat/_snaps/mock-package.md | 3 cffr-0.2.0/cffr/tests/testthat/_snaps/parse_citation.md | 4 cffr-0.2.0/cffr/tests/testthat/_snaps/utils-persons.md |only cffr-0.2.0/cffr/tests/testthat/_snaps/write_bib |only cffr-0.2.0/cffr/tests/testthat/_snaps/write_bib.md |only cffr-0.2.0/cffr/tests/testthat/test-assertions.R | 19 cffr-0.2.0/cffr/tests/testthat/test-bibtex-check-ruby.R |only cffr-0.2.0/cffr/tests/testthat/test-bibtex2cff.R |only cffr-0.2.0/cffr/tests/testthat/test-cff_create.R | 153 + cffr-0.2.0/cffr/tests/testthat/test-cff_description.R | 50 cffr-0.2.0/cffr/tests/testthat/test-cff_extract_to_bibtex.R |only cffr-0.2.0/cffr/tests/testthat/test-cff_parse_citation.R | 233 --- cffr-0.2.0/cffr/tests/testthat/test-cff_parse_person.R | 93 + cffr-0.2.0/cffr/tests/testthat/test-cff_to_bibtex.R |only cffr-0.2.0/cffr/tests/testthat/test-utils-persons.R |only cffr-0.2.0/cffr/tests/testthat/test-write_bib.R |only cffr-0.2.0/cffr/vignettes/REFERENCES.bib |only cffr-0.2.0/cffr/vignettes/bibtex_cff.Rmd |only cffr-0.2.0/cffr/vignettes/cffr.Rmd | 559 +++---- cffr-0.2.0/cffr/vignettes/crosswalk.Rmd | 322 ++-- cffr-0.2.0/cffr/vignettes/paper.Rmd | 7 100 files changed, 3948 insertions(+), 2186 deletions(-)
Title: Stepwise Elimination and Term Reordering for Mixed-Effects
Regression
Description: Finds the largest possible regression model that will still converge
for various types of regression analyses (including mixed models and generalized
additive models) and then optionally performs stepwise elimination similar to the
forward and backward effect-selection methods in SAS, based on the change in
log-likelihood or its significance, Akaike's Information Criterion, the Bayesian
Information Criterion, the explained deviance, or the F-test of the change in R².
Author: Cesko C. Voeten [aut, cre] (<https://orcid.org/0000-0003-4687-9973>)
Maintainer: Cesko C. Voeten <cvoeten@gmail.com>
Diff between buildmer versions 2.2 dated 2021-11-02 and 2.3 dated 2022-01-04
ChangeLog | 9 ++++++++- DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ R/buildmer-private.R | 12 ++++++++---- R/control.R | 12 ++++++------ build/vignette.rds |binary man/LRTalpha.Rd | 4 ++-- tests/testthat/test-nse.R |only 8 files changed, 34 insertions(+), 22 deletions(-)
Title: An R Port of the 'ImageJ' Plugin 'Auto Threshold'
Description: Algorithms for automatically finding appropriate
thresholds for numerical data, with special functions for thresholding
images. Provides the 'ImageJ' 'Auto Threshold' plugin functionality to
R users. See <https://imagej.net/plugins/auto-threshold> and Landini et al.
(2017) <DOI:10.1111/jmi.12474>.
Author: Rory Nolan [aut, cre, trl] (<https://orcid.org/0000-0002-5239-4043>),
Luis Alvarez [ctb] (<https://orcid.org/0000-0003-1316-1906>),
Sergi Padilla-Parra [ctb, ths]
(<https://orcid.org/0000-0002-8010-9481>),
Gabriel Landini [ctb, cph] (<https://orcid.org/0000-0002-9689-0989>)
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between autothresholdr versions 1.3.12 dated 2021-11-18 and 1.4.0 dated 2022-01-04
DESCRIPTION | 6 - MD5 | 27 +++---- NEWS.md | 7 + R/argchk.R |only R/thresh.R | 115 ++++++++++++-------------------- build/vignette.rds |binary inst/WORDLIST | 64 ++++++++--------- inst/doc/finding-thresholds.R | 10 ++ inst/doc/finding-thresholds.Rmd | 19 +++++ inst/doc/finding-thresholds.html | 33 ++++++++- inst/doc/thresholding-image-stacks.html | 89 ++++++++++++++++-------- inst/doc/thresholding-images.html | 40 ++++++++--- man/auto_thresh.Rd | 20 ++++- tests/testthat/test-thresh.R | 11 +++ vignettes/finding-thresholds.Rmd | 19 +++++ 15 files changed, 297 insertions(+), 163 deletions(-)
More information about autothresholdr at CRAN
Permanent link
Title: Judd, McClelland, & Ryan Formatting for ANOVA Output
Description: Produces ANOVA tables in the format used by Judd, McClelland, and Ryan
(2017, ISBN: 978-1138819832) in their introductory textbook, Data Analysis. This includes
proportional reduction in error and formatting to improve ease the transition between the book
and R.
Author: Adam Blake [cre, aut] (<https://orcid.org/0000-0001-7881-8652>),
Jeff Chrabaszcz [aut],
Ji Son [aut] (<https://orcid.org/0000-0002-4258-4791>),
Jim Stigler [aut] (<https://orcid.org/0000-0001-6107-7827>)
Maintainer: Adam Blake <adamblake@g.ucla.edu>
Diff between supernova versions 2.4.4 dated 2021-10-21 and 2.5.0 dated 2022-01-04
DESCRIPTION | 12 MD5 | 44 - NAMESPACE | 1 NEWS.md | 11 R/pairwise.R | 21 R/supernova-package.R |only R/supernova.R | 8 R/value_extraction.R | 58 + README.md | 46 - inst/WORDLIST | 1 man/estimate_extraction.Rd | 9 man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only tests/testthat/_snaps/generate_models.md | 42 tests/testthat/_snaps/pairwise/bonferroni-one-variable.svg | 100 +- tests/testthat/_snaps/pairwise/multiple-plots-raceethnic.svg | 100 +- tests/testthat/_snaps/pairwise/multiple-plots-sex-raceethnic.svg | 430 +++++----- tests/testthat/_snaps/pairwise/t-test-one-variable.svg | 100 +- tests/testthat/_snaps/pairwise/tukey-one-variable.svg | 100 +- tests/testthat/_snaps/value_extraction.md |only tests/testthat/test-pairwise.R | 7 tests/testthat/test-value_extraction.r | 11 28 files changed, 557 insertions(+), 544 deletions(-)
Title: Sign-Simplicity-Regression-Solver
Description: Implementation of the SSR-Algorithm. The Sign-Simplicity-Regression model is a nonparametric statistical model which is based on residual signs and simplicity assumptions on the regression function. Goal is to calculate the most parsimonious regression function satisfying the statistical adequacy requirements. Theory and functions are specified in Metzner (2020, ISBN: 979-8-68239-420-3, "Trendbasierte Prognostik") and Metzner (2021, ISBN: 979-8-59347-027-0, "Adäquates Maschinelles Lernen").
Author: Lars Metzner [aut, cre]
Maintainer: Lars Metzner <lars.metzner@ppi.de>
Diff between sisireg versions 0.9.1 dated 2021-04-09 and 1.0.0 dated 2022-01-04
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- NAMESPACE | 2 +- R/axe.R | 2 +- R/narch.R |only R/ssrMLP.R | 2 +- man/axe_narch_model.Rd |only man/axe_narch_predict.Rd |only 8 files changed, 13 insertions(+), 10 deletions(-)
Title: R Commander Plug-in for University Level Applied Statistics
Description: An R Commander "plug-in" extending functionality of linear models
and providing an interface to Partial Least Squares Regression and Linear and
Quadratic Discriminant analysis. Several statistical summaries are extended,
predictions are offered for additional types of analyses, and extra plots, tests
and mixed models are available.
Author: Kristian Hovde Liland [aut, cre],
Solve S<e6>b<f8> [aut]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between RcmdrPlugin.NMBU versions 1.8.12 dated 2020-10-28 and 1.8.13 dated 2022-01-04
DESCRIPTION | 11 ++++++----- MD5 | 6 ++++-- NEWS |only R/NMBU.GUI.Models.R | 2 +- README.md |only 5 files changed, 11 insertions(+), 8 deletions(-)
More information about RcmdrPlugin.NMBU at CRAN
Permanent link
Title: Quantum Walk-Based Data Analysis and Prediction
Description: Modeling and predicting time series based on continuous time quantum.This package can be divided into three parts: Basis Generation, Data Modeling and Prediction, and Model Evaluation according to the analysis process of time series. 'Basis Generation' has realized the continuous time quantum walk simulation for generating modes as the basis. Some regression methods are used to model the observed time series and predict in 'Data Modeling and Prediction', and 'Model Evaluation' can be used to evaluate the data correspondence between two series.
Author: Binghuang Pan [aut, cre],
Zhaoyuan Yu [aut],
Xu Hu [ctb],
Dongshuang Li [ctb],
Yuhao Teng [ctb],
Xinxin Zhou [ctb]
Maintainer: Binghuang Pan <bright1up@163.com>
Diff between QWDAP versions 1.1.8 dated 2021-12-03 and 1.1.10 dated 2022-01-04
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NAMESPACE | 2 +- R/pcr.r | 10 +++++----- R/plsr.r | 10 +++++----- R/ppr.r | 14 +++++++------- R/predict.r | 6 +++--- R/qwalk.r | 3 +-- R/swr.r | 10 +++++----- R/var.r | 17 ++++++++++++----- 10 files changed, 52 insertions(+), 46 deletions(-)
Title: Multiblock Data Fusion in Statistics and Machine Learning
Description: Functions and datasets to support Smilde, Næs and Liland (2021, ISBN: 978-1-119-60096-1)
"Multiblock Data Fusion in Statistics and Machine Learning - Applications in the Natural and Life Sciences".
This implements and imports a large collection of methods for multiblock data analysis with common interfaces, result- and plotting
functions, several real data sets and six vignettes covering a range different applications.
Author: Kristian Hovde Liland [aut, cre]
(<https://orcid.org/0000-0001-6468-9423>),
Solve Sæbø [ctb],
Stefan Schrunner [rev]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between multiblock versions 0.8.0 dated 2021-09-21 and 0.8.1 dated 2022-01-04
DESCRIPTION | 10 +-- MD5 | 25 +++++---- NEWS |only R/rosa.R | 4 - R/unsupervised.R | 8 ++- README.md | 2 build/vignette.rds |binary inst/doc/vignette_B_basic.html | 4 - inst/doc/vignette_C_unsupervised.html | 6 +- inst/doc/vignette_D_asca.html | 6 +- inst/doc/vignette_E_supervised.html | 86 +++++++++++++++++----------------- inst/doc/vignette_F_complex.html | 2 man/pcagca.Rd | 8 ++- man/rosa.Rd | 4 - 14 files changed, 89 insertions(+), 76 deletions(-)
Title: The Distribution of Distances Between Discrete Events in Fixed
Time
Description: Distribution functions and test for over-representation of short
distances in the Liland distribution. Simulation functions are included for
comparison.
Author: Kristian Hovde Liland [aut, cre],
Lars Snipen [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between fixedTimeEvents versions 1.0 dated 2016-10-02 and 1.0.1 dated 2022-01-04
DESCRIPTION | 12 +- MD5 | 22 ++-- NEWS |only README.md |only build/vignette.rds |binary inst/doc/fixedTimeEvents.R | 8 - inst/doc/fixedTimeEvents.html | 199 ++++++++++++++++++++++++++++-------------- man/Liland.test.Rd | 2 man/dLiland.Rd | 2 man/facL.Rd | 5 + man/rrLiland.Rd | 2 man/simLiland.Rd | 2 man/validate.Rr.Rd | 2 13 files changed, 169 insertions(+), 87 deletions(-)
More information about fixedTimeEvents at CRAN
Permanent link
Title: Common Mean Vector under Copula Models
Description: Estimate bivariate common mean vector under copula models with known correlation. In the current version, available copulas are the Clayton, Gumbel, Frank, Farlie-Gumbel-Morgenstern (FGM), and normal copulas. See Shih et al. (2019) <doi:10.1080/02331888.2019.1581782> and Shih et al. (2021) <under review> for details under the FGM and general copulas, respectively.
Author: Jia-Han Shih
Maintainer: Jia-Han Shih <tommy355097@gmail.com>
Diff between CommonMean.Copula versions 1.0.3 dated 2021-12-20 and 1.0.4 dated 2022-01-04
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NAMESPACE | 1 + R/CommonMean.Copula.R | 20 +++++++++++++++++--- build/partial.rdb |binary 5 files changed, 26 insertions(+), 11 deletions(-)
More information about CommonMean.Copula at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-04 0.2.0
Title: UK Biobank COVID-19 Data Processing and Risk Factor Association
Tests
Description: Process UK Biobank COVID-19 test result data for susceptibility, severity and mortality analyses, perform potential non-genetic COVID-19 risk factor and co-morbidity association tests. Wang et al. (2021) <doi:10.5281/zenodo.5174381>.
Author: Longfei Wang [aut, cre] (<https://orcid.org/0000-0002-5143-4146>)
Maintainer: Longfei Wang <wang.lo@wehi.edu.au>
Diff between UKB.COVID19 versions 0.1.2 dated 2021-12-19 and 0.1.3 dated 2022-01-04
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NEWS.md | 6 ++++++ R/asso_test.R | 2 +- R/comorbidity_asso.R | 2 +- R/comorbidity_summary.R | 2 +- R/data_reform.R | 2 +- R/makePhenotypes.R | 2 +- R/risk_factor.R | 2 +- inst/GWAS |only 10 files changed, 25 insertions(+), 17 deletions(-)
Title: Manipulate Matrix Row and Column Labels with Ease
Description: Functions to assist manipulation of matrix
row and column labels for all types of matrix mathematics
where row and column labels are to be respected.
Author: Matthew Heun [aut, cre] (<https://orcid.org/0000-0002-7438-214X>)
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between RCLabels versions 0.0.4 dated 2021-12-06 and 0.1.0 dated 2022-01-04
DESCRIPTION | 17 - MD5 | 43 +- NAMESPACE | 3 NEWS.md | 25 + R/data.R | 2 R/extractors.R | 147 ++++++++-- R/notation.R | 22 - R/utilities.R | 4 README.md | 12 data/prepositions.rda |binary inst/CITATION | 8 inst/WORDLIST | 4 inst/doc/RCLabels.R | 16 - inst/doc/RCLabels.Rmd | 19 + inst/doc/RCLabels.html | 564 +++++++++++++++++++++------------------ man/get_nouns.Rd | 2 man/get_piece.Rd |only man/paste_pieces.Rd | 4 man/prepositions.Rd | 2 man/row-col-notation.Rd | 12 tests/testthat/test-extractors.R | 106 ++++++- tests/testthat/test-notation.R | 59 ++-- vignettes/RCLabels.Rmd | 19 + 23 files changed, 712 insertions(+), 378 deletions(-)
Title: Empirical Likelihood Ratio Test for Two Samples with Censored
Data
Description: Calculates the p-value for a mean-type hypothesis (or multiple mean-type hypotheses) based on
two samples with possible censored data.
Author: William H. Barton <williamhbarton1@gmail.com> under the supervision of Dr. Mai Zhou
Maintainer: Mai Zhou <maizhou@gmail.com>
Diff between emplik2 versions 1.30 dated 2021-05-31 and 1.32 dated 2022-01-04
DESCRIPTION | 12 ++++---- MD5 | 13 ++++---- R/el2.cen.EMm.R | 12 ++++---- R/el2.test.wtm.R | 18 +++++++----- R/el2.test.wts.R | 77 +++++++++++++++++++++++++++++++++------------------- README |only man/el2.cen.EMm.Rd | 4 +- man/el2.test.wts.Rd | 5 ++- 8 files changed, 84 insertions(+), 57 deletions(-)
Title: Prediction and Clustering on the Torus by Conformal Prediction
Description: Provides various tools of for clustering multivariate angular
data on the torus. The package provides angular
adaptations of usual clustering methods such as the k-means
clustering, pairwise angular distances, which can be used as an
input for distance-based clustering algorithms, and implements
clustering based on the conformal prediction framework. Options
for the conformal scores include scores based on a kernel density
estimate, multivariate von Mises mixtures, and naive k-means clusters.
Moreover, the package provides some basic data handling tools for
angular data.
Author: Sungkyu Jung [aut, cph],
Seungki Hong [aut, cre],
Kiho Park [ctb],
Byungwon Kim [ctb]
Maintainer: Seungki Hong <skgaboja@snu.ac.kr>
Diff between ClusTorus versions 0.2.1 dated 2021-12-17 and 0.2.2 dated 2022-01-04
ClusTorus-0.2.1/ClusTorus/R/predict.kmeans.torus.R |only ClusTorus-0.2.1/ClusTorus/build/partial.rdb |only ClusTorus-0.2.2/ClusTorus/DESCRIPTION | 6 ClusTorus-0.2.2/ClusTorus/MD5 | 96 ++++++------ ClusTorus-0.2.2/ClusTorus/R/EMsinvMmix.R | 5 ClusTorus-0.2.2/ClusTorus/R/EMsinvMmix.init.R | 2 ClusTorus-0.2.2/ClusTorus/R/ang.dist.R | 3 ClusTorus-0.2.2/ClusTorus/R/ang.minus.R | 3 ClusTorus-0.2.2/ClusTorus/R/ang.pdist.R | 3 ClusTorus-0.2.2/ClusTorus/R/clus.torus.R | 56 ++++--- ClusTorus-0.2.2/ClusTorus/R/cluster.assign.torus.R | 31 ++- ClusTorus-0.2.2/ClusTorus/R/cp.torus.kde.R | 5 ClusTorus-0.2.2/ClusTorus/R/data.R | 60 +++++-- ClusTorus-0.2.2/ClusTorus/R/ellip.kmeans.torus.R | 52 +++--- ClusTorus-0.2.2/ClusTorus/R/hcluster.torus.R | 11 - ClusTorus-0.2.2/ClusTorus/R/hyperparam.J.R | 29 ++- ClusTorus-0.2.2/ClusTorus/R/hyperparam.alpha.R | 31 ++- ClusTorus-0.2.2/ClusTorus/R/hyperparam.torus.R | 44 +++-- ClusTorus-0.2.2/ClusTorus/R/icp.torus.R | 108 +++++++++---- ClusTorus-0.2.2/ClusTorus/R/kde.torus.R | 9 - ClusTorus-0.2.2/ClusTorus/R/kmeans.torus.R | 4 ClusTorus-0.2.2/ClusTorus/R/methods.R | 142 ++++++++++-------- ClusTorus-0.2.2/ClusTorus/R/on.torus.R | 3 ClusTorus-0.2.2/ClusTorus/R/tor.minus.R | 3 ClusTorus-0.2.2/ClusTorus/R/wtd.stat.ang.R | 6 ClusTorus-0.2.2/ClusTorus/data/SARS_CoV_2.rda |binary ClusTorus-0.2.2/ClusTorus/data/data_6VXX.rda |only ClusTorus-0.2.2/ClusTorus/inst/doc/ClusTorus.html | 4 ClusTorus-0.2.2/ClusTorus/man/EMsinvMmix.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/ILE.Rd | 14 - ClusTorus-0.2.2/ClusTorus/man/SARS_CoV_2.Rd | 14 + ClusTorus-0.2.2/ClusTorus/man/ang.dist.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/ang.minus.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/ang.pdist.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/clus.torus.Rd | 61 +++++-- ClusTorus-0.2.2/ClusTorus/man/cluster.assign.torus.Rd | 20 +- ClusTorus-0.2.2/ClusTorus/man/cp.torus.kde.Rd | 5 ClusTorus-0.2.2/ClusTorus/man/data_6VXX.Rd |only ClusTorus-0.2.2/ClusTorus/man/ellip.kmeans.torus.Rd | 14 + ClusTorus-0.2.2/ClusTorus/man/hyperparam.J.Rd | 9 - ClusTorus-0.2.2/ClusTorus/man/hyperparam.alpha.Rd | 5 ClusTorus-0.2.2/ClusTorus/man/hyperparam.torus.Rd | 14 + ClusTorus-0.2.2/ClusTorus/man/icp.torus.Rd | 52 ++++-- ClusTorus-0.2.2/ClusTorus/man/icp.torus.eval.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/kde.torus.Rd | 5 ClusTorus-0.2.2/ClusTorus/man/kmeans.torus.Rd | 8 - ClusTorus-0.2.2/ClusTorus/man/on.torus.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/tor.minus.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/toydata1.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/toydata2.Rd | 3 ClusTorus-0.2.2/ClusTorus/man/wtd.stat.ang.Rd | 3 51 files changed, 580 insertions(+), 387 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10918-6, Nankodo, ISBN: 978-4-524-26158-1, Ohmsha, ISBN: 978-4-274-22632-8), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 3,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.54 dated 2020-12-18 and 1.55 dated 2022-01-04
DESCRIPTION | 16 MD5 | 26 - NAMESPACE | 1 NEWS | 8 R/EZR.R | 530 +++++++++++++++++++++++++--- inst/CHANGES | 8 inst/doc/ezr.htm | 17 inst/doc/ezr.pdf |binary inst/etc/menus.txt | 2 inst/etc/menus_old.txt | 77 ++-- inst/po/ja/LC_MESSAGES/R-RcmdrPlugin.EZR.mo |binary man/EZR.Rd | 14 man/EZR.dialogs.Rd | 2 po/R-RcmdrPlugin.EZR.po | 64 +++ 14 files changed, 659 insertions(+), 106 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: General Purpose G-Estimation for End of Study or Time-Varying
Outcomes
Description: Provides a series of general purpose tools to perform g-estimation using the methods described in Sjolander and Vansteelandt (2016) <doi:10.1515/em-2015-0005> and Dukes and Vansteelandt <doi:10.1093/aje/kwx347>. The package allows for g-estimation in a wide variety of circumstances, including an end of study or time-varying outcome, and an exposure that is a binary, continuous, or a categorical variable with three or more categories. The package also supports g-estimation with time-varying causal effects and effect modification by a confounding variable.
Author: Daniel Tompsett, Stijn Vansteelandt, Oliver Dukes, Bianca De Stavola
Maintainer: Daniel Tompsett <danieltompsettwork@gmail.com>
Diff between gesttools versions 1.2.0 dated 2021-06-10 and 1.3.0 dated 2022-01-04
DESCRIPTION | 12 MD5 | 26 - NAMESPACE | 2 R/FormatData.R | 103 +++--- R/dataexamples.R | 414 +++++++++++++------------- R/gestMultiple.R | 814 ++++++++++++++++++++++++++-------------------------- R/gestSingle.R | 809 ++++++++++++++++++++++++++------------------------- R/gestboot.R | 199 ++++++------ man/FormatData.Rd | 31 + man/dataexamples.Rd | 22 - man/gestMultiple.Rd | 109 +++--- man/gestSingle.Rd | 105 +++--- man/gestboot.Rd | 59 +-- tests |only 14 files changed, 1392 insertions(+), 1313 deletions(-)
Title: Lightweight Federal Information Processing System (FIPS) Code
Information Retrieval
Description: Provides a lightweight suite
of functions for retrieving information
about 5-digit or 2-digit US FIPS codes.
Author: Justin Singh-Mohudpur [aut, cre]
(<https://orcid.org/0000-0002-5233-5799>),
Urban Flooding Open Knowledge Network (UF-OKN) [fnd]
Maintainer: Justin Singh-Mohudpur <justin@justinsingh.me>
Diff between fipio versions 1.0.0 dated 2021-10-11 and 1.1.0 dated 2022-01-04
fipio-1.0.0/fipio/R/fipio.R |only fipio-1.1.0/fipio/DESCRIPTION | 30 ++-- fipio-1.1.0/fipio/MD5 | 36 +++- fipio-1.1.0/fipio/NAMESPACE | 11 + fipio-1.1.0/fipio/NEWS.md | 16 ++ fipio-1.1.0/fipio/R/geolocate.R |only fipio-1.1.0/fipio/R/internals.R |only fipio-1.1.0/fipio/R/lookup.R |only fipio-1.1.0/fipio/R/sysdata.rda |binary fipio-1.1.0/fipio/R/zzz.R |only fipio-1.1.0/fipio/README.md | 115 ++++++++++++--- fipio-1.1.0/fipio/inst |only fipio-1.1.0/fipio/man/as_fips.Rd |only fipio-1.1.0/fipio/man/coords_to_fips.Rd |only fipio-1.1.0/fipio/man/dot-intersects.Rd |only fipio-1.1.0/fipio/man/dot-segment_intersect.Rd |only fipio-1.1.0/fipio/man/figures |only fipio-1.1.0/fipio/man/fips_abbr.Rd | 2 fipio-1.1.0/fipio/man/fips_county.Rd | 2 fipio-1.1.0/fipio/man/fips_geometry.Rd | 2 fipio-1.1.0/fipio/man/fips_metadata.Rd | 4 fipio-1.1.0/fipio/man/fips_state.Rd | 2 fipio-1.1.0/fipio/man/using_fastmatch.Rd |only fipio-1.1.0/fipio/tests/testthat/setup-fipio.R | 84 ++++++++--- fipio-1.1.0/fipio/tests/testthat/test-fipio.R | 184 ++++++++++++++++++++++++- 25 files changed, 403 insertions(+), 85 deletions(-)
Title: Interface to Bank of Japan Statistics
Description: Provides an interface to Bank of Japan <https://www.boj.or.jp>
statistics.
Author: Stefan Angrick [aut, cre, cph]
Maintainer: Stefan Angrick <contact@stefanangrick.net>
Diff between BOJ versions 0.2.4 dated 2021-12-11 and 0.3 dated 2022-01-04
DESCRIPTION | 8 +- MD5 | 10 +- R/BOJ.R | 185 ++++++++++++++++++++++++++++++++---------------- inst/doc/BOJ.html | 20 +++-- man/get_boj.Rd | 6 + man/get_boj_datasets.Rd | 12 ++- 6 files changed, 158 insertions(+), 83 deletions(-)