Title: Client for 'mapshaper' for 'Geospatial' Operations
Description: Edit and simplify 'geojson', 'Spatial', and 'sf'
objects. This is wrapper around the 'mapshaper' 'JavaScript' library
by Matthew Bloch <https://github.com/mbloch/mapshaper/> to perform
topologically-aware polygon simplification, as well as other
operations such as clipping, erasing, dissolving, and converting
'multi-part' to 'single-part' geometries. It relies on the
'geojsonio' package for working with 'geojson' objects, the 'sf'
package for working with 'sf' objects, and the 'sp' and 'rgdal'
packages for working with 'Spatial' objects.
Author: Andy Teucher [aut, cre],
Kenton Russell [aut] ,
Matthew Bloch [cph]
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between rmapshaper versions 0.4.5 dated 2021-05-26 and 0.4.6 dated 2022-05-10
DESCRIPTION | 10 MD5 | 43 ++-- NAMESPACE | 1 NEWS.md | 9 R/clip_erase.R | 2 R/rmapshaper.R | 2 R/simplify.R | 15 + R/utils.R | 10 README.md | 80 +------ build/vignette.rds |binary inst/doc/rmapshaper.html | 383 ++++++++++++++++++++++++++++++------- man/apply_mapshaper_commands.Rd | 8 man/check_sys_mapshaper.Rd | 2 tests/testthat/test-clip_erase.R | 7 tests/testthat/test-simplify.R | 13 + tests/testthat/test-utils.R | 9 tools/readme/unnamed-chunk-2-1.png |binary tools/readme/unnamed-chunk-2-2.png |binary tools/readme/unnamed-chunk-3-1.png |binary tools/readme/unnamed-chunk-4-1.png |binary tools/readme/unnamed-chunk-5-1.png |binary tools/readme/unnamed-chunk-6-1.png |binary tools/readme/unnamed-chunk-8-1.png |only 23 files changed, 424 insertions(+), 170 deletions(-)
Title: Supplementary Tools for R Packages Developers
Description: Supplementary utils for CRAN maintainers and R packages developers.
Validating the library, packages and lock files.
Exploring a complexity of a specific package like evaluating its size in bytes with all dependencies.
The shiny app complexity could be explored too.
Assessing the life duration of a specific package version.
Checking a CRAN package check page status for any errors and warnings.
Retrieving a DESCRIPTION or NAMESPACE file for any package version.
Comparing DESCRIPTION or NAMESPACE files between different package versions.
Getting a list of all releases for a specific package.
The Bioconductor is partly supported.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between pacs versions 0.4.4 dated 2022-04-04 and 0.4.5 dated 2022-05-10
DESCRIPTION | 10 +++---- MD5 | 26 ++++++++++--------- NEWS.md | 6 ++++ R/deps.R | 24 ++++++++++++------ R/valid.R | 40 +++++++++++++++++++++++++++--- build/vignette.rds |binary inst/doc/tinyverse.Rmd | 13 +++++---- inst/doc/tinyverse.html | 40 ++++++++++++++++++------------ man/figures/pacs_logo.svg |only man/lib_validate.Rd | 10 ++++++- man/pac_deps_dev.Rd | 10 ++++++- man/pac_deps_user.Rd | 10 ++++++- tests/testthat/files/renv_test_small.lock |only tests/testthat/test-validate.R | 31 +++++++++-------------- vignettes/tinyverse.Rmd | 13 +++++---- 15 files changed, 156 insertions(+), 77 deletions(-)
Title: Perform HTTP Requests and Process the Responses
Description: Tools for creating and modifying HTTP requests, then
performing them and processing the results. 'httr2' is a modern
re-imagining of 'httr' that uses a pipe-based interface and solves
more of the problems that API wrapping packages face.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between httr2 versions 0.2.0 dated 2022-04-28 and 0.2.1 dated 2022-05-10
httr2-0.2.0/httr2/inst/doc/wrapping-apis.R |only httr2-0.2.0/httr2/inst/doc/wrapping-apis.Rmd |only httr2-0.2.0/httr2/inst/doc/wrapping-apis.html |only httr2-0.2.0/httr2/vignettes/wrapping-apis.Rmd |only httr2-0.2.1/httr2/DESCRIPTION | 11 +++-- httr2-0.2.1/httr2/MD5 | 36 ++++++++----------- httr2-0.2.1/httr2/NEWS.md | 8 ++++ httr2-0.2.1/httr2/R/oauth-flow.R | 4 ++ httr2-0.2.1/httr2/R/oauth-token.R | 3 + httr2-0.2.1/httr2/R/req-error.R | 2 - httr2-0.2.1/httr2/R/req-perform.R | 2 - httr2-0.2.1/httr2/R/req-template.R | 16 ++++++-- httr2-0.2.1/httr2/R/req-url.R | 5 +- httr2-0.2.1/httr2/build/vignette.rds |binary httr2-0.2.1/httr2/inst/doc/httr2.html | 22 +++++------ httr2-0.2.1/httr2/man/req_error.Rd | 2 - httr2-0.2.1/httr2/man/req_template.Rd | 14 ++++++- httr2-0.2.1/httr2/tests/testthat/test-req-perform.R | 13 ------ httr2-0.2.1/httr2/tests/testthat/test-req-template.R | 5 ++ httr2-0.2.1/httr2/tests/testthat/test-req-throttle.R | 13 +++--- httr2-0.2.1/httr2/tests/testthat/test-req-url.R | 3 - 21 files changed, 91 insertions(+), 68 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-22 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-21 1.0
Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents. Supported by grant NSF DMS 1712839.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 2.1 dated 2021-09-30 and 2.2 dated 2022-05-10
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 1 + R/fixcoxph.R | 4 ++-- R/heinzeschemper.R | 12 ++++++++---- R/summarizetable.R | 27 +++++++++++++++++++++------ build/partial.rdb |binary man/heinzeschemper.Rd | 5 ++++- 8 files changed, 48 insertions(+), 25 deletions(-)
More information about PHInfiniteEstimates at CRAN
Permanent link
Title: Business Days Calculations and Utilities
Description: Business days calculations based on a list of holidays and
nonworking weekdays. Quite useful for fixed income and derivatives pricing.
Author: Wilson Freitas <wilson.freitas@gmail.com>
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between bizdays versions 1.0.9 dated 2022-02-05 and 1.0.10 dated 2022-05-10
bizdays-1.0.10/bizdays/DESCRIPTION | 18 bizdays-1.0.10/bizdays/MD5 | 111 - bizdays-1.0.10/bizdays/NAMESPACE | 1 bizdays-1.0.10/bizdays/NEWS.md |only bizdays-1.0.10/bizdays/R/R-bizdays-package.r | 27 bizdays-1.0.10/bizdays/R/adjust.date.R | 101 - bizdays-1.0.10/bizdays/R/bizdays.R | 90 bizdays-1.0.10/bizdays/R/bizdays.options.R | 61 bizdays-1.0.10/bizdays/R/bizdiff.R | 31 bizdays-1.0.10/bizdays/R/bizseq.R | 35 bizdays-1.0.10/bizdays/R/calendar-export.R | 53 bizdays-1.0.10/bizdays/R/calendar.R | 317 ++- bizdays-1.0.10/bizdays/R/create-calendars.R | 202 +- bizdays-1.0.10/bizdays/R/getbizdays.R | 30 bizdays-1.0.10/bizdays/R/getdate.R | 93 bizdays-1.0.10/bizdays/R/is.bizday.R | 92 bizdays-1.0.10/bizdays/R/load-buildin-calendars.R |only bizdays-1.0.10/bizdays/R/offset.R | 46 bizdays-1.0.10/bizdays/R/zzz.R | 16 bizdays-1.0.10/bizdays/README.md | 40 bizdays-1.0.10/bizdays/build/vignette.rds |binary bizdays-1.0.10/bizdays/inst/doc/Creating_Calendars.R | 46 bizdays-1.0.10/bizdays/inst/doc/Creating_Calendars.Rmd | 46 bizdays-1.0.10/bizdays/inst/doc/Creating_Calendars.html | 49 bizdays-1.0.10/bizdays/inst/doc/Financial_and_non_financial.html | 5 bizdays-1.0.10/bizdays/inst/doc/bizdays.R |only bizdays-1.0.10/bizdays/inst/doc/bizdays.Rmd |only bizdays-1.0.10/bizdays/inst/doc/bizdays.html |only bizdays-1.0.10/bizdays/inst/extdata/Brazil_ANBIMA.json | 947 +++++++++- bizdays-1.0.10/bizdays/inst/extdata/Brazil_B3.json |only bizdays-1.0.10/bizdays/inst/extdata/actual.json | 2 bizdays-1.0.10/bizdays/inst/extdata/weekends.json | 7 bizdays-1.0.10/bizdays/man/adjust.date.Rd | 29 bizdays-1.0.10/bizdays/man/bizdays-package.Rd | 15 bizdays-1.0.10/bizdays/man/bizdays.Rd | 6 bizdays-1.0.10/bizdays/man/bizdays.options.Rd | 16 bizdays-1.0.10/bizdays/man/bizdayse.Rd | 2 bizdays-1.0.10/bizdays/man/bizdiff.Rd | 3 bizdays-1.0.10/bizdays/man/bizseq.Rd | 2 bizdays-1.0.10/bizdays/man/calendar-holidays-weekdays.Rd | 3 bizdays-1.0.10/bizdays/man/calendar-register.Rd | 82 bizdays-1.0.10/bizdays/man/create.calendar.Rd | 96 - bizdays-1.0.10/bizdays/man/getbizdays.Rd | 8 bizdays-1.0.10/bizdays/man/getdate.Rd | 21 bizdays-1.0.10/bizdays/man/is.bizday.Rd | 79 bizdays-1.0.10/bizdays/man/load_builtin_calendars.Rd |only bizdays-1.0.10/bizdays/man/offset.Rd | 7 bizdays-1.0.10/bizdays/man/other-calendars.Rd | 55 bizdays-1.0.10/bizdays/tests/testthat/test-bizdays.R | 127 - bizdays-1.0.10/bizdays/tests/testthat/test-calendar.R | 625 +++--- bizdays-1.0.10/bizdays/tests/testthat/test-getbizdays.R | 9 bizdays-1.0.10/bizdays/tests/testthat/test-getdate.R |only bizdays-1.0.10/bizdays/tests/testthat/test-parsedate.R | 32 bizdays-1.0.10/bizdays/tests/testthat/test-register.R | 72 bizdays-1.0.10/bizdays/vignettes/Creating_Calendars.Rmd | 46 bizdays-1.0.10/bizdays/vignettes/bizdays.Rmd |only bizdays-1.0.9/bizdays/NEWS |only bizdays-1.0.9/bizdays/R/datasets.R |only bizdays-1.0.9/bizdays/data |only bizdays-1.0.9/bizdays/inst/doc/Setting_default_calendar_in_Rprofile.R |only bizdays-1.0.9/bizdays/inst/doc/Setting_default_calendar_in_Rprofile.Rmd |only bizdays-1.0.9/bizdays/inst/doc/Setting_default_calendar_in_Rprofile.html |only bizdays-1.0.9/bizdays/man/holidaysANBIMA.Rd |only bizdays-1.0.9/bizdays/man/holidaysB3.Rd |only bizdays-1.0.9/bizdays/vignettes/Setting_default_calendar_in_Rprofile.Rmd |only 65 files changed, 2527 insertions(+), 1274 deletions(-)
Title: Efficient Estimation of Bid-Ask Spreads from Open, High, Low,
and Close Prices
Description: Implements an efficient estimation procedure of bid-ask spreads from open, high, low, and close prices
as described in Ardia-Guidotti-Kroencke <https://www.ssrn.com/abstract=3892335>.
Moreover, it provides an implementation of the estimators proposed in
Roll (1984) <doi:10.1111/j.1540-6261.1984.tb03897.x>,
Corwin-Schultz (2012) <doi:10.1111/j.1540-6261.2012.01729.x>,
and Abdi-Ranaldo (2017) <doi:10.1093/rfs/hhx084>.
Author: Emanuele Guidotti [aut, cre] ,
David Ardia [ctb] ,
Tim Kroencke [ctb]
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between bidask versions 0.1.1 dated 2022-02-01 and 1.0.0 dated 2022-05-10
DESCRIPTION | 11 +- MD5 | 45 +++++----- NAMESPACE | 20 ++-- R/ar.R | 158 +++++++++++++++++------------------ R/cs.R | 186 ++++++++++++++++++++--------------------- R/edge.R | 221 ++++++++++++++++++++++++++++++++----------------- R/gmm.R | 172 +++++++++++++++++++------------------- R/ohlc.R | 208 +++++++++++++++++++++++----------------------- R/roll.R | 82 +++++++++--------- R/sim.R | 222 ++++++++++++++++++++++++------------------------- R/spread.R | 225 +++++++++++++++++++++++++------------------------- R/utils.R | 84 +++++++++--------- README.md |only build/partial.rdb |binary inst/CITATION | 18 ++-- man/AR.Rd | 60 ++++++------- man/CS.Rd | 60 ++++++------- man/EDGE.Rd | 59 +++++++------ man/OHLC.Rd | 52 +++++------ man/bidask-package.Rd | 50 ++++++----- man/rmean.Rd | 24 ++--- man/rsum.Rd | 24 ++--- man/sim.Rd | 128 ++++++++++++++-------------- man/spread.Rd | 165 ++++++++++++++++++------------------ 24 files changed, 1184 insertions(+), 1090 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-10 0.2.3.1
2013-08-12 0.2.3
2011-12-23 0.2.2
2011-02-08 0.2.1
2009-10-27 0.2
2009-03-27 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-25 0.6-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-11-29 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-28 0.0-2
2011-12-02 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-09 1.4.9
2012-03-23 1.4.8
2011-02-09 1.4.7
2010-08-30 1.4.6
2010-06-15 1.4.4
2010-05-05 1.4.2
2010-05-05 1.4.3
2010-04-08 1.4.1
2010-03-17 1.4
2009-11-24 1.3
2009-11-12 1.2
2009-10-12 1.1
2009-03-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-17 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-06 1.2
2018-01-27 1.1
2016-11-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-22 0.10.0
2015-02-05 0.9.3
2014-02-08 0.8.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-26 1.4
2020-06-23 1.3
2020-04-03 1.2
2020-03-28 1.1
2020-03-16 1.0
2017-07-08 0.9.7
2017-04-20 0.9.6
2017-03-29 0.9.4
2017-03-15 0.9.3
2017-02-03 0.9.2
2016-11-19 0.9.1
2016-08-03 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-23 1.1.0
2018-01-24 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-28 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-05 1.5-6
2013-11-04 1.5-5
2013-09-25 1.5-3
2013-05-16 1.5-1
2013-01-28 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-26 1.0
Title: Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network
Description: Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <arXiv:1711.04702>.
Author: Deisy Morselli Gysi, Andre Voigt, Tiago Miranda Fragoso, Eivind Almaas and Katja Nowick.
Maintainer: Deisy Morselli Gysi <deisy.ccnr@gmail.com>
Diff between wTO versions 1.6.3 dated 2018-11-17 and 2.0 dated 2022-05-10
wTO-1.6.3/wTO/build |only wTO-1.6.3/wTO/inst/doc |only wTO-1.6.3/wTO/vignettes |only wTO-2.0/wTO/DESCRIPTION | 15 +++---- wTO-2.0/wTO/MD5 | 57 ++++++++++-------------------- wTO-2.0/wTO/NAMESPACE | 4 ++ wTO-2.0/wTO/R/Correlation.Overlap.R | 16 ++++++-- wTO-2.0/wTO/R/Cut.off2.R | 3 + wTO-2.0/wTO/R/ExampledfExpression2.R | 4 +- wTO-2.0/wTO/R/wTO.R | 5 +- wTO-2.0/wTO/R/wTO.aux.each.R | 4 +- wTO-2.0/wTO/R/wTO.export.R | 2 - wTO-2.0/wTO/R/wTOfast.R | 36 ++++++++++-------- wTO-2.0/wTO/README.md |only wTO-2.0/wTO/man/ExampleGRF.Rd | 4 +- wTO-2.0/wTO/man/Microarray_Expression1.Rd | 4 +- wTO-2.0/wTO/man/Microarray_Expression2.Rd | 8 ++-- wTO-2.0/wTO/man/NetVis.Rd | 21 ++++++++--- wTO-2.0/wTO/man/metagenomics_abundance.Rd | 4 +- wTO-2.0/wTO/man/wTO.Complete.Rd | 19 +++++++--- wTO-2.0/wTO/man/wTO.aux.each.Rd | 4 +- wTO-2.0/wTO/man/wTO.export.Rd | 5 +- wTO-2.0/wTO/man/wTO.fast.Rd | 41 +++++++++++++-------- wTO-2.0/wTO/man/wTO.rep_measure.Rd | 10 ++++- 24 files changed, 156 insertions(+), 110 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-23 4.2
2011-12-15 4.1.3
2011-12-06 4.1.2
2011-07-23 4.1.1
2011-03-31 4.1
2010-09-03 4.0.2
2010-08-05 4.0.1
2008-12-16 4.0
2008-08-08 3.3
2008-06-12 3.2
2008-05-19 3.1
2008-04-10 2.2
2008-04-04 2.1
2008-03-21 2.0
2008-03-09 1.3
2008-02-29 1.2
2008-02-26 1.1
2008-02-25 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-01-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-15 3.0.1
2015-04-13 3.0
2014-03-10 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-19 1.1.1
2012-08-01 1.1
2009-10-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-18 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-30 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-29 0.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-01-23 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-03 1.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-15 0.2-1
2014-04-08 0.2-0
2013-07-23 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-15 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-04-12 1.2.1
2008-03-06 1.02
2006-08-07 1.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-30 0.1.2
2011-10-26 0.1.1
2011-09-26 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-30 0.2
2017-05-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-23 0.3
2014-08-05 0.2
2013-06-27 0.1.1
2013-05-29 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-31 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-19 1.3
2013-02-03 1.2
2012-09-10 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-22 0.2.1
2015-04-21 0.2
2015-03-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-04 2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-27 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-11 1.0.1
2015-01-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-11 0.3-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-26 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-21 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-12-15 2.0-1
2011-02-04 2.0
2010-01-17 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-24 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-28 1.6
2014-08-16 1.5.2
2013-12-16 1.5
2013-11-09 1.2.4.1
2012-09-19 1.2.4
2012-07-04 1.2.2
2012-05-15 1.2.1
2012-03-05 1.2
2011-07-30 1.1
2011-07-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-13 1.3
2014-09-12 1.2
2014-08-16 1.1
2014-03-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-10 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-05 0.92.2
2013-02-01 0.92.1
2012-12-17 0.92
2012-08-21 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-24 2.0
2014-04-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-02 2019.4.2
2019-03-06 2019.2.21
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-03 0.1.4
2014-03-02 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-12 1.03
Title: A Wrapper of the JavaScript Library 'DataTables'
Description: Data objects in R can be rendered as HTML tables using the
JavaScript library 'DataTables' (typically via R Markdown or Shiny). The
'DataTables' library has been included in this R package. The package name
'DT' is an abbreviation of 'DataTables'.
Author: Yihui Xie [aut, cre],
Joe Cheng [aut],
Xianying Tan [aut],
JJ Allaire [ctb],
Maximilian Girlich [ctb],
Greg Freedman Ellis [ctb],
Johannes Rauh [ctb],
SpryMedia Limited [ctb, cph] ,
Brian Reavis [ctb, cph] ,
Leon Gersen [ctb, cph] ,
Bartek Szopka [ct [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between DT versions 0.22 dated 2022-03-28 and 0.23 dated 2022-05-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/DT.html | 14 ++++++++++---- inst/htmlwidgets/datatables.js | 6 ++++++ 5 files changed, 23 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-06 1.02
2012-08-05 1.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-10 1.2-2
2015-03-02 1.2-1
2012-09-18 1.1-2
2012-04-19 1.1-0
2011-02-09 1.0-2
2011-02-04 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-04 0.0.3
2016-06-28 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-27 1.1
2010-01-15 1.0
2007-07-07 0.3-1
2007-06-20 0.3-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-05 0.1.1
2012-06-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-14 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-01 1.2
2013-02-05 1.1
2012-11-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2008-11-26 0.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-31 1.2
2012-11-14 1.1
2012-05-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-16 2.1-3
2013-05-01 2.1-2
2012-12-24 2.1-1
2012-12-15 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-20 1.0.2
2014-10-02 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-09 0.14
2013-01-31 0.13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-03 1.4
2012-07-20 1.3
2012-05-24 1.2
2012-05-18 1.1
2012-04-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-03 1.1.1
2012-02-18 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-08 1.13.8-8
2012-11-13 0.1.11-13
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-06-01 1.2
2018-03-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-06 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-19 1.99
2011-03-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-17 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-10-01 1.1
2012-06-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-07 0.1.1
2018-11-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-14 1.1
2012-09-07 1.0-2
2012-06-26 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-08 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 2.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-26 1.1.1
2014-09-03 1.1
2014-07-22 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-11 2.0
2014-03-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-02 1.0
2012-07-22 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-11-22 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-29 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-08-28 1.0.0
2016-07-28 0.99.2
2016-07-26 0.99.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-31 0.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-21 1.1.2
2011-07-07 1.1.1
2010-05-22 1.1
2008-10-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-05 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-25 0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-01 1.0.0
2020-09-17 0.9.20
2020-07-29 0.9.19
2020-05-03 0.9.18
2019-11-16 0.9.17
2019-06-23 0.9.16
2018-12-13 0.9.15
2018-06-01 0.9.13
2018-05-08 0.9.11
2018-03-03 0.9.10
2018-02-09 0.9.5
2018-01-05 0.8.2
2017-11-18 0.8.1
2017-09-15 0.7.8
2017-04-26 0.7.4
2017-03-27 0.6.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-07-15 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-14 1.0
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.30 dated 2022-03-02 and 0.31 dated 2022-05-10
DESCRIPTION | 6 MD5 | 24 +- NEWS.md | 6 R/api.R | 5 R/base64.R | 9 R/github.R | 14 + R/markdown.R | 1 R/packages.R | 11 + R/session.R | 1 R/utils.R | 6 build/vignette.rds |binary inst/doc/xfun.html | 520 ++++++++++++++++++++++++++++++++++++++++++++++------- man/base64_uri.Rd | 9 13 files changed, 529 insertions(+), 83 deletions(-)
Title: Create Blogs and Websites with R Markdown
Description: Write blog posts and web pages in R Markdown. This package
supports the static site generator 'Hugo' (<https://gohugo.io>) best,
and it also supports 'Jekyll' (<https://jekyllrb.com>) and 'Hexo'
(<https://hexo.io>).
Author: Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Alison Presmanes Hill [aut] ,
Amber Thomas [ctb],
Beilei Bian [ctb],
Brandon Greenwell [ctb],
Brian Barkley [ctb],
Deependra Dhakal [ctb],
Eric Nantz [ctb],
Forest Fang [ctb],
Garrick Aden-Buie [ctb] [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between blogdown versions 1.9 dated 2022-03-28 and 1.10 dated 2022-05-10
DESCRIPTION | 6 ++--- MD5 | 10 ++++----- R/hugo.R | 56 +++++++++++++++++++++++-------------------------------- R/serve.R | 5 ++++ R/utils.R | 2 - man/shortcode.Rd | 5 ++-- 6 files changed, 41 insertions(+), 43 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-27 1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-05-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-01 1.1.1
2013-03-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-01 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-05-26 1.0
2011-05-26 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-18 2.60
2011-08-25 2.51
2011-05-18 2.01
2011-01-03 1.02
2010-12-01 1.01
2009-10-14 0.51
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-23 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-22 0.0.1.8
2018-05-13 0.0.1.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-29 1.2
2013-08-06 1.1
2013-06-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-22 0.3.8
2011-08-15 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-26 0.9
2007-08-14 0.8
2007-06-01 0.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-18 1.0-0
2012-03-30 0.2-3
2012-01-06 0.2-1
2012-01-04 0.2-0
2011-11-14 0.1-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-11 0.2.1
2016-11-06 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-16 0.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-11-09 0.2.3
2013-05-19 0.2.2
2012-03-04 0.2
2011-07-26 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-22 0.6-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 0.7.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-14 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-10 0.1.1
2019-01-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-15 1.1.0
2018-03-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-18 0.5-3
2011-11-22 0.5-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-03 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-08-26 1.2.4
2013-07-26 1.2.3
2012-04-06 1.2.2
2011-03-21 1.2.0
2011-02-11 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-02 1.1
2011-09-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-16 0.2.1
2013-12-11 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-10-25 0.1.0
2017-05-20 0.0.2
2017-04-01 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-27 1.2
2012-06-12 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 1.0.2
2013-04-08 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-10 0.3
2008-02-19 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-10 1.0.4
2012-03-26 1.0.3
2011-05-24 1.0.2
2011-02-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-17 0.97
2012-03-05 0.96
2010-06-03 0.95
2007-12-07 0.93
2006-09-29 0.92
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-20 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-29 4.2
2014-03-18 4.1
2013-12-16 3.0
2013-11-24 2.0
2013-10-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-05 2.0
2013-12-17 1.6
2011-08-30 1.5
2011-08-10 1.4
2011-06-15 1.3
2011-05-21 1.2
2010-11-09 1.1
2010-11-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-14 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-03 0.0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-18 0.2
2013-04-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-09-25 0.2.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-17 0.4-9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-12 3.0
2009-02-16 2.0
2009-01-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-07 1.1.0
2012-07-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-02-29 1.0.5
2011-03-05 1.0.4
2009-11-30 1.0.3
2009-09-28 1.0.2
2008-01-23 1.0.1
2007-06-26 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-09 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-08 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-29 2.0.3
2020-04-22 2.0.2
2020-04-19 2.0.1
2020-04-17 2.0.0
2020-01-10 1.2.3
2020-01-07 1.2.2
2019-12-17 1.2.1
2019-12-05 1.2
2019-03-13 1.1
2018-10-27 1.0
2017-10-25 0.99.9
2017-03-21 0.99.8
2017-01-31 0.99.7
2016-12-19 0.99.6
2016-10-06 0.99.5
2016-08-12 0.99.4
2016-08-01 0.99.3
2016-06-24 0.99.2
2016-05-18 0.99.1
2016-04-12 0.99.0
2015-11-16 0.98.0
2015-08-05 0.97.1
2015-07-29 0.97.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-19 1.0.3
2012-08-13 1.0.1
2011-12-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-08 1.1
2013-01-04 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-30 4.1
2012-12-04 4.0
2010-08-25 3.1
2010-07-24 3.0
2009-11-04 2.0
2009-08-04 1.0
Title: Data Exploration Tools from Yale University
Description: This collection of data exploration tools was developed at
Yale University for the graphical exploration of complex
multivariate data; barcode and gpairs now have their own
packages. The big.read.table() function provided here may be
useful for large files when only a subset is needed (but please
see the note in the help page for this function).
Author: John W. Emerson and Walton A. Green
Maintainer: John W. Emerson <john.emerson@yale.edu>
Diff between YaleToolkit versions 4.2.2 dated 2014-12-31 and 4.2.3 dated 2022-05-10
YaleToolkit-4.2.2/YaleToolkit/README.md |only YaleToolkit-4.2.3/YaleToolkit/DESCRIPTION | 21 +++++++++------- YaleToolkit-4.2.3/YaleToolkit/MD5 | 19 ++++++-------- YaleToolkit-4.2.3/YaleToolkit/NAMESPACE | 7 ++++- YaleToolkit-4.2.3/YaleToolkit/R/YaleToolkit.R | 5 +++ YaleToolkit-4.2.3/YaleToolkit/R/big.read.table.R | 3 ++ YaleToolkit-4.2.3/YaleToolkit/R/getnrows.R | 1 YaleToolkit-4.2.3/YaleToolkit/man/YaleToolkit.Rd | 13 ++++------ YaleToolkit-4.2.3/YaleToolkit/man/big.read.table.Rd | 19 ++++++++++---- YaleToolkit-4.2.3/YaleToolkit/man/getnrows.Rd | 5 ++- YaleToolkit-4.2.3/YaleToolkit/man/whatis.Rd | 26 ++++++++++---------- 11 files changed, 71 insertions(+), 48 deletions(-)
Title: Functions and Datasets of the German WikiBook "GNU R"
Description: The german Wikibook "GNU R" introduces R to new users. This package is a collection of functions and datas used in the german WikiBook "GNU R".
Author: Joerg grosse Schlarmann
Maintainer: Joerg grosse Schlarmann (aka Produnis) <schlarmann@produnis.de>
Diff between wikibooks versions 0.2 dated 2007-06-21 and 0.2.1 dated 2022-05-10
DESCRIPTION | 23 +++++++++++++---------- MD5 |only NAMESPACE |only NEWS.md |only R/Bundesliga.Mannschaft.R | 12 ++++++------ R/Bundesliga.Tabelle.R | 32 ++++++++++++++++---------------- R/Bundesliga.XML.R | 14 +++++++------- R/sens.spec.R | 30 +++++++++++++++--------------- README.md |only man/Abschlussnote.Rd | 6 +++--- man/Bundesliga.Mannschaft.Rd | 10 +++++----- man/Bundesliga.Rd | 6 +++--- man/Bundesliga.Tabelle.Rd | 14 +++++++------- man/Bundesliga.XML.Rd | 7 ++++--- man/Essen.Zeit.Rd | 6 +++--- man/Mikrolagerung.Rd | 6 +++--- man/bsp1.Rd | 2 +- man/bsp2.Rd | 2 +- man/bsp3.Rd | 2 +- man/bsp4.Rd | 2 +- man/cms.Rd | 6 +++--- man/sens.spec.Rd | 8 ++++---- man/wikibooks-package.Rd | 8 ++++---- 23 files changed, 100 insertions(+), 96 deletions(-)
Title: Generic Voss Algorithm (Random Sequential Additions)
Description: Generating realizations of a fractal Brownian function on uniform 1D & 2D grid with classic and generic versions of the Voss algorithm (random sequential additions).
Author: Pavel V. Moskalev
Maintainer: Pavel V. Moskalev <moskalefff@gmail.com>
Diff between Voss versions 0.1-4 dated 2012-06-04 and 0.1.5 dated 2022-05-10
DESCRIPTION | 20 +++----- MD5 | 18 +++---- NAMESPACE | 14 +---- R/voss1d.R | 81 ++++++++++++++++----------------- R/voss1g.R | 79 ++++++++++++++++---------------- man/Voss-package.Rd | 41 ++++++++-------- man/voss1d.Rd | 84 +++++++++++++++++----------------- man/voss1g.Rd | 124 +++++++++++++++++++++++++-------------------------- man/voss2d.Rd | 86 +++++++++++++++++------------------ man/voss2g.Rd | 126 +++++++++++++++++++++++++--------------------------- 10 files changed, 328 insertions(+), 345 deletions(-)
Title: Time Series Modeling for Air Pollution and Health
Description: Tools for specifying time series regression models.
Author: Roger D. Peng <rpeng@jhsph.edu>, with contributions from Aidan McDermott
Maintainer: Roger D. Peng <rpeng@jhsph.edu>
Diff between tsModel versions 0.6 dated 2013-06-24 and 0.6-1 dated 2022-05-10
tsModel-0.6-1/tsModel/DESCRIPTION | 18 +++--- tsModel-0.6-1/tsModel/MD5 | 28 +++++---- tsModel-0.6-1/tsModel/NAMESPACE | 25 ++++++-- tsModel-0.6-1/tsModel/R/balt_data.R |only tsModel-0.6-1/tsModel/R/decompose.R | 26 +++++++++ tsModel-0.6-1/tsModel/R/lspline.R | 2 tsModel-0.6-1/tsModel/R/spatialpool.R | 27 +++++++++ tsModel-0.6-1/tsModel/R/tsModelSpec.R | 52 +++++++++++++++++- tsModel-0.6-1/tsModel/man/Lag.Rd |only tsModel-0.6-1/tsModel/man/balt.Rd | 64 +++++++++++----------- tsModel-0.6-1/tsModel/man/harmonic.Rd |only tsModel-0.6-1/tsModel/man/runMean.Rd |only tsModel-0.6-1/tsModel/man/spatialgibbs.Rd | 73 +++++++++++++++----------- tsModel-0.6-1/tsModel/man/tsdecomp.Rd |only tsModel-0.6-1/tsModel/tests/testthat |only tsModel-0.6-1/tsModel/tests/testthat.R |only tsModel-0.6/tsModel/R/NMMAPS-model.R |only tsModel-0.6/tsModel/man/decompose.Rd |only tsModel-0.6/tsModel/man/modelTerms.Rd |only tsModel-0.6/tsModel/tests/reg-tests.R |only tsModel-0.6/tsModel/tests/reg-tests.Rout.save |only 21 files changed, 223 insertions(+), 92 deletions(-)
Title: Pacote Para Analise De Experimentos Com Testemunhas Adicionais
Description: Pacote para a analise de experimentos com um ou dois fatores com
testemunhas adicionais conduzidos no delineamento inteiramente
casualizado ou em blocos casualizados.
"Package for the analysis of one or two-way experiments with
additional controls conducted in a completely randomized design
or in a randomized block design".
Author: Alcinei Mistico Azevedo [aut, cre]
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between Tratamentos.ad versions 0.2.2 dated 2021-11-19 and 0.2.3 dated 2022-05-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 +++++- R/Dados6.R | 2 +- man/Dados6.Rd | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
More information about Tratamentos.ad at CRAN
Permanent link
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks
easier, more effective, and consistent with tools already in wide use.
Much of the infrastructure needed for text mining with tidy data
frames already exists in packages like 'dplyr', 'broom', 'tidyr', and
'ggplot2'. In this package, we provide functions and supporting data
sets to allow conversion of text to and from tidy formats, and to
switch seamlessly between tidy tools and existing text mining
packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] ,
Emil Hvitfeldt [ctb],
Os Keyes [ctb] ,
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.3.2 dated 2021-09-30 and 0.3.3 dated 2022-05-10
tidytext-0.3.2/tidytext/R/deprecated.R |only tidytext-0.3.2/tidytext/man/deprecated-se.Rd |only tidytext-0.3.2/tidytext/man/tidytext.Rd |only tidytext-0.3.3/tidytext/DESCRIPTION | 65 - tidytext-0.3.3/tidytext/MD5 | 49 - tidytext-0.3.3/tidytext/NAMESPACE | 8 tidytext-0.3.3/tidytext/NEWS.md | 6 tidytext-0.3.3/tidytext/R/globals.R | 2 tidytext-0.3.3/tidytext/R/reorder_within.R | 39 + tidytext-0.3.3/tidytext/R/stm_tidiers.R | 5 tidytext-0.3.3/tidytext/R/tidytext.R | 38 - tidytext-0.3.3/tidytext/R/unnest_tokens.R | 23 tidytext-0.3.3/tidytext/README.md | 39 - tidytext-0.3.3/tidytext/build/vignette.rds |binary tidytext-0.3.3/tidytext/inst/doc/tf_idf.html | 280 ++++++++ tidytext-0.3.3/tidytext/inst/doc/tidying_casting.html | 328 ++++++++-- tidytext-0.3.3/tidytext/inst/doc/tidytext.Rmd | 2 tidytext-0.3.3/tidytext/inst/doc/tidytext.html | 328 +++++++++- tidytext-0.3.3/tidytext/man/figures/README-unnamed-chunk-13-1.png |binary tidytext-0.3.3/tidytext/man/figures/README-unnamed-chunk-9-1.png |binary tidytext-0.3.3/tidytext/man/reorder_within.Rd | 12 tidytext-0.3.3/tidytext/man/tidytext-package.Rd |only tidytext-0.3.3/tidytext/tests/testthat/_snaps/reorder-within/custom-label-boxplot.svg |only tidytext-0.3.3/tidytext/tests/testthat/test-reorder-within.R | 18 tidytext-0.3.3/tidytext/tests/testthat/test-stm-tidiers.R | 14 tidytext-0.3.3/tidytext/tests/testthat/test-unnest-char.R | 6 tidytext-0.3.3/tidytext/tests/testthat/test-unnest-tokens.R | 8 tidytext-0.3.3/tidytext/vignettes/tidytext.Rmd | 2 28 files changed, 1007 insertions(+), 265 deletions(-)
Title: Create Ternary and Holdridge Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) and
Holdridge life zone plots <doi:10.1126/science.105.2727.367> using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click ternary plotting.
Author: Martin R. Smith [aut, cre, cph]
,
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 2.0.0 dated 2022-01-04 and 2.1.0 dated 2022-05-10
DESCRIPTION | 17 MD5 | 96 NAMESPACE | 8 NEWS.md | 11 R/Contours.R | 168 + R/Holdridge.R | 401 +-- R/Polygons.R |only R/Ternary-package.R | 14 R/TernaryPlot.R | 302 +- R/helpers.R | 283 +- R/shiny.R | 63 R/zzz.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/TernaryApp/app.R | 4 inst/doc/Holdridge.html | 242 +- inst/doc/Ternary.R | 131 - inst/doc/Ternary.Rmd | 137 - inst/doc/Ternary.html | 395 ++- inst/doc/interpolation.R | 75 inst/doc/interpolation.Rmd | 84 inst/doc/interpolation.html | 308 ++ inst/doc/new-users.R | 2 inst/doc/new-users.Rmd | 2 inst/doc/new-users.html | 286 ++ man/AddToTernary.Rd | 12 man/ColourTernary.Rd | 4 man/HoldridgePlot.Rd | 7 man/Polygon-Geometry.Rd |only man/Ternary-package.Rd | 8 man/TernaryContour.Rd | 15 man/TernaryDensityContour.Rd | 8 man/TernaryPlot.Rd | 8 man/TernaryPointValues.Rd | 8 man/TriangleCentres.Rd | 9 man/TriangleInHull.Rd |only tests/spelling.R | 8 tests/testthat.R | 4 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/Contours/contours-skiwiff.svg | 2308 +++++++++----------- tests/testthat/_snaps/Holdridge/holdridge-basic.svg | 2 tests/testthat/test-Contours.R | 310 +- tests/testthat/test-Coordinates.R | 151 - tests/testthat/test-Holdridge.R | 16 tests/testthat/test-Polygons.R |only tests/testthat/test-axis-rotate.R | 136 - tests/testthat/test-ternary.R | 375 +-- vignettes/Ternary.Rmd | 137 - vignettes/interpolation.Rmd | 84 vignettes/new-users.Rmd | 2 51 files changed, 4065 insertions(+), 2580 deletions(-)
Title: 'SciViews' - 'Sweave', 'Knitr' and R Markdown Companion
Functions
Description: Functions to enumerate and reference figures, tables and equations
in R Markdown documents that do not support these features (thus not
'bookdown' or 'quarto'. Supporting functions for using 'Sweave' and 'Knitr'
with 'LyX'.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svSweave versions 0.9-8 dated 2013-01-28 and 1.0.0 dated 2022-05-10
svSweave-0.9-8/svSweave/NEWS |only svSweave-0.9-8/svSweave/R/cleanLyxRnw.R |only svSweave-0.9-8/svSweave/R/tangleLyxRnw.R |only svSweave-0.9-8/svSweave/R/weaveLyxRnw.R |only svSweave-0.9-8/svSweave/TODO |only svSweave-0.9-8/svSweave/man/cleanLyxRnw.Rd |only svSweave-1.0.0/svSweave/DESCRIPTION | 36 ++++++++++------ svSweave-1.0.0/svSweave/MD5 | 34 ++++++++++----- svSweave-1.0.0/svSweave/NAMESPACE | 36 +++++++++++++--- svSweave-1.0.0/svSweave/NEWS.md |only svSweave-1.0.0/svSweave/R/clean_lyx.R |only svSweave-1.0.0/svSweave/R/new_labelling.R |only svSweave-1.0.0/svSweave/R/svSweave-internal.R |only svSweave-1.0.0/svSweave/R/svSweave-package.R |only svSweave-1.0.0/svSweave/R/tangle_lyx.R |only svSweave-1.0.0/svSweave/R/weave_lyx.R |only svSweave-1.0.0/svSweave/build |only svSweave-1.0.0/svSweave/inst/CITATION | 35 ++++++++------- svSweave-1.0.0/svSweave/inst/WORDLIST |only svSweave-1.0.0/svSweave/inst/doc |only svSweave-1.0.0/svSweave/man/clean_lyx.Rd |only svSweave-1.0.0/svSweave/man/fig_id.Rd |only svSweave-1.0.0/svSweave/man/new_labelling.Rd |only svSweave-1.0.0/svSweave/man/subsettable.Rd |only svSweave-1.0.0/svSweave/man/svSweave-package.Rd | 53 ++++++++++++++---------- svSweave-1.0.0/svSweave/tests |only svSweave-1.0.0/svSweave/vignettes |only 27 files changed, 128 insertions(+), 66 deletions(-)
Title: 'SciViews' - Socket Server
Description: A socket server allows to connect clients to R.
Author: Philippe Grosjean [aut, cre] ,
Matthew Dowle [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svSocket versions 1.0.2 dated 2021-05-05 and 1.1.0 dated 2022-05-10
svSocket-1.0.2/svSocket/R/closeSocketClients.R |only svSocket-1.0.2/svSocket/R/evalServer.R |only svSocket-1.0.2/svSocket/R/getSocket.R |only svSocket-1.0.2/svSocket/R/parSocket.R |only svSocket-1.0.2/svSocket/R/processSocket.R |only svSocket-1.0.2/svSocket/R/sendSocketClients.R |only svSocket-1.0.2/svSocket/R/socketClientConnection.R |only svSocket-1.0.2/svSocket/R/startSocketServer.R |only svSocket-1.0.2/svSocket/R/stopSocketServer.R |only svSocket-1.0.2/svSocket/man/closeSocketClients.Rd |only svSocket-1.0.2/svSocket/man/evalServer.Rd |only svSocket-1.0.2/svSocket/man/getSocketClients.Rd |only svSocket-1.0.2/svSocket/man/getSocketServerName.Rd |only svSocket-1.0.2/svSocket/man/getSocketServers.Rd |only svSocket-1.0.2/svSocket/man/parSocket.Rd |only svSocket-1.0.2/svSocket/man/processSocket.Rd |only svSocket-1.0.2/svSocket/man/sendSocketClients.Rd |only svSocket-1.0.2/svSocket/man/socketClientConnection.Rd |only svSocket-1.0.2/svSocket/man/startSocketServer.Rd |only svSocket-1.1.0/svSocket/DESCRIPTION | 12 svSocket-1.1.0/svSocket/MD5 | 68 +- svSocket-1.1.0/svSocket/NAMESPACE | 23 svSocket-1.1.0/svSocket/NEWS.md | 91 +-- svSocket-1.1.0/svSocket/R/close_socket_clients.R |only svSocket-1.1.0/svSocket/R/eval_socket_server.R |only svSocket-1.1.0/svSocket/R/get_socket.R |only svSocket-1.1.0/svSocket/R/par_socket_server.R |only svSocket-1.1.0/svSocket/R/process_socket_server.R |only svSocket-1.1.0/svSocket/R/send_socket_clients.R |only svSocket-1.1.0/svSocket/R/socket_client_connection.R |only svSocket-1.1.0/svSocket/R/start_socket_server.R |only svSocket-1.1.0/svSocket/R/stop_socket_server.R |only svSocket-1.1.0/svSocket/R/svSocket-Internal.R | 14 svSocket-1.1.0/svSocket/R/svSocket-package.R | 18 svSocket-1.1.0/svSocket/inst/CITATION | 13 svSocket-1.1.0/svSocket/inst/WORDLIST | 2 svSocket-1.1.0/svSocket/inst/doc/svSocket.R | 44 - svSocket-1.1.0/svSocket/inst/doc/svSocket.Rmd | 79 +- svSocket-1.1.0/svSocket/inst/doc/svSocket.html | 423 ++++++++++++++-- svSocket-1.1.0/svSocket/inst/etc/ReadMe.txt | 24 svSocket-1.1.0/svSocket/inst/testCLI/testCLI.R | 73 +- svSocket-1.1.0/svSocket/man/close_socket_clients.Rd |only svSocket-1.1.0/svSocket/man/eval_socket_server.Rd |only svSocket-1.1.0/svSocket/man/get_socket_clients.Rd |only svSocket-1.1.0/svSocket/man/get_socket_server_name.Rd |only svSocket-1.1.0/svSocket/man/get_socket_servers.Rd |only svSocket-1.1.0/svSocket/man/par_socket_server.Rd |only svSocket-1.1.0/svSocket/man/process_socket_server.Rd |only svSocket-1.1.0/svSocket/man/send_socket_clients.Rd |only svSocket-1.1.0/svSocket/man/socket_client_connection.Rd |only svSocket-1.1.0/svSocket/man/start_socket_server.Rd |only svSocket-1.1.0/svSocket/man/svSocket-package.Rd | 18 svSocket-1.1.0/svSocket/tests/spelling.R | 4 svSocket-1.1.0/svSocket/vignettes/svSocket.Rmd | 79 +- 54 files changed, 659 insertions(+), 326 deletions(-)
Title: 'SciViews' - Functions to Interface with Komodo IDE
Description: R-side code to implement an R editor and IDE in Komodo IDE
with the SciViews-K extension.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svKomodo versions 0.9-63 dated 2015-02-05 and 1.0.0 dated 2022-05-10
svKomodo-0.9-63/svKomodo/NEWS |only svKomodo-0.9-63/svKomodo/R/koUninstall.R |only svKomodo-0.9-63/svKomodo/TODO |only svKomodo-0.9-63/svKomodo/inst/NEWS.Rd |only svKomodo-1.0.0/svKomodo/DESCRIPTION | 33 svKomodo-1.0.0/svKomodo/MD5 | 34 svKomodo-1.0.0/svKomodo/NAMESPACE | 22 svKomodo-1.0.0/svKomodo/NEWS.md |only svKomodo-1.0.0/svKomodo/R/koCmd.R | 278 +++-- svKomodo-1.0.0/svKomodo/R/koInstall.R | 143 +- svKomodo-1.0.0/svKomodo/R/koRefresh.R | 136 +- svKomodo-1.0.0/svKomodo/R/svKomodo-internal.R | 989 +++++++++---------- svKomodo-1.0.0/svKomodo/R/svKomodo-package.R |only svKomodo-1.0.0/svKomodo/R/svTaskCallbackManager.R | 196 ++- svKomodo-1.0.0/svKomodo/inst/CITATION | 37 svKomodo-1.0.0/svKomodo/inst/WORDLIST |only svKomodo-1.0.0/svKomodo/man/koCmd.Rd | 277 ++--- svKomodo-1.0.0/svKomodo/man/koInstall.Rd | 93 - svKomodo-1.0.0/svKomodo/man/koRefresh.Rd | 38 svKomodo-1.0.0/svKomodo/man/svKomodo-package.Rd | 67 - svKomodo-1.0.0/svKomodo/man/svTaskCallbackManager.Rd | 120 +- svKomodo-1.0.0/svKomodo/tests |only 22 files changed, 1375 insertions(+), 1088 deletions(-)
Title: 'SciViews' - HTTP Server
Description: A simple HTTP server allows to connect GUI clients to R.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svHttp versions 0.9-55 dated 2014-03-02 and 1.0.4 dated 2022-05-10
svHttp-0.9-55/svHttp/NEWS |only svHttp-0.9-55/svHttp/R/httpServer.R |only svHttp-0.9-55/svHttp/TODO |only svHttp-0.9-55/svHttp/inst/NEWS.Rd |only svHttp-0.9-55/svHttp/man/httpServer.Rd |only svHttp-1.0.4/svHttp/DESCRIPTION | 30 ++++++++++------- svHttp-1.0.4/svHttp/MD5 | 35 +++++++++++++++----- svHttp-1.0.4/svHttp/NAMESPACE | 27 +++++++++++----- svHttp-1.0.4/svHttp/NEWS.md |only svHttp-1.0.4/svHttp/R/http_server_clients.R |only svHttp-1.0.4/svHttp/R/http_server_name.R |only svHttp-1.0.4/svHttp/R/http_server_port.R |only svHttp-1.0.4/svHttp/R/par_http_server.R |only svHttp-1.0.4/svHttp/R/start_http_server.R |only svHttp-1.0.4/svHttp/R/stop_http_server.R |only svHttp-1.0.4/svHttp/R/svHttp-Internal.R |only svHttp-1.0.4/svHttp/R/svHttp-package.R |only svHttp-1.0.4/svHttp/build |only svHttp-1.0.4/svHttp/inst/CITATION | 35 ++++++++++---------- svHttp-1.0.4/svHttp/inst/WORDLIST |only svHttp-1.0.4/svHttp/inst/doc |only svHttp-1.0.4/svHttp/man/http_server_clients.Rd |only svHttp-1.0.4/svHttp/man/http_server_name.Rd |only svHttp-1.0.4/svHttp/man/http_server_port.Rd |only svHttp-1.0.4/svHttp/man/par_http_server.Rd |only svHttp-1.0.4/svHttp/man/start_http_server.Rd |only svHttp-1.0.4/svHttp/man/stop_http_server.Rd |only svHttp-1.0.4/svHttp/man/svHttp-package.Rd | 42 +++++++++++-------------- svHttp-1.0.4/svHttp/tests |only svHttp-1.0.4/svHttp/vignettes |only 30 files changed, 100 insertions(+), 69 deletions(-)
Title: 'SciViews' - Standard Dialog Boxes using Tcl/Tk
Description: Reimplementation of the 'svDialogs' dialog boxes in Tcl/Tk.
Author: Philippe Grosjean [aut, cre]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svDialogstcltk versions 0.9-4 dated 2014-03-02 and 1.0.0 dated 2022-05-10
svDialogstcltk-0.9-4/svDialogstcltk/NEWS |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgDir.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgInput.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgList.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgMessage.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgOpen.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/R/dlgSave.tcltkGUI.R |only svDialogstcltk-0.9-4/svDialogstcltk/TODO |only svDialogstcltk-0.9-4/svDialogstcltk/inst/NEWS.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/DESCRIPTION | 31 +++- svDialogstcltk-1.0.0/svDialogstcltk/MD5 | 40 ++++-- svDialogstcltk-1.0.0/svDialogstcltk/NAMESPACE | 20 +-- svDialogstcltk-1.0.0/svDialogstcltk/NEWS.md |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_dir.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_input.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_list.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_message.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_open.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/dlg_save.tcltkGUI.R |only svDialogstcltk-1.0.0/svDialogstcltk/R/svDialogstcltk-Internal.R | 12 - svDialogstcltk-1.0.0/svDialogstcltk/R/svDialogstcltk-package.R |only svDialogstcltk-1.0.0/svDialogstcltk/build |only svDialogstcltk-1.0.0/svDialogstcltk/inst/CITATION | 35 ++--- svDialogstcltk-1.0.0/svDialogstcltk/inst/WORDLIST |only svDialogstcltk-1.0.0/svDialogstcltk/inst/doc |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_dir.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_input.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_list.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_message.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_open.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/dlg_save.Rd |only svDialogstcltk-1.0.0/svDialogstcltk/man/svDialogstcltk-package.Rd | 63 +++++----- svDialogstcltk-1.0.0/svDialogstcltk/tests |only svDialogstcltk-1.0.0/svDialogstcltk/vignettes |only 34 files changed, 113 insertions(+), 88 deletions(-)
More information about svDialogstcltk at CRAN
Permanent link
Title: 'SciViews' - Standard Dialog Boxes for Windows, MacOS and
Linuxes
Description: Quickly construct standard dialog boxes for your GUI, including
message boxes, input boxes, list, file or directory selection, ... In case R
cannot display GUI dialog boxes, a simpler command line version of these
interactive elements is also provided as fallback solution.
Author: Philippe Grosjean [aut, cre] ,
Paul Hibbins [ctb]
Maintainer: Philippe Grosjean <phgrosjean@sciviews.org>
Diff between svDialogs versions 1.0.3 dated 2021-04-17 and 1.1.0 dated 2022-05-10
DESCRIPTION | 17 +-- MD5 | 44 ++++----- NAMESPACE | 42 ++++---- NEWS.md | 104 +++++++++++----------- R/dlg_dir.R | 19 +--- R/dlg_form.R | 10 +- R/dlg_input.R | 10 +- R/dlg_list.R | 10 +- R/dlg_message.R | 10 +- R/dlg_open.R | 43 +++++---- R/dlg_save.R | 22 +--- R/svDialogs-internal.R | 6 - build/vignette.rds |binary inst/CITATION | 37 ++++--- inst/doc/Standard_dialog_boxes_for_everybody.html | 39 +++++++- man/dlg_dir.Rd | 16 +-- man/dlg_form.Rd | 12 +- man/dlg_input.Rd | 12 +- man/dlg_list.Rd | 12 +- man/dlg_message.Rd | 12 +- man/dlg_open.Rd | 24 ++--- man/dlg_save.Rd | 28 ++++- man/svDialogs-package.Rd | 2 23 files changed, 286 insertions(+), 245 deletions(-)
Title: Interface for MOA Stream Clustering Algorithms
Description: Interface for data stream clustering algorithms implemented in the MOA (Massive Online Analysis) framework (Albert Bifet, Geoff Holmes, Richard Kirkby, Bernhard Pfahringer (2010). MOA: Massive Online Analysis, Journal of Machine Learning Research 11: 1601-1604).
Author: Michael Hahsler [aut, cre, cph],
John Forrest [aut, cph],
Matthew Bolanos [ctb],
Matthias Carnein [ctb],
Dalibor Krleža [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between streamMOA versions 1.2-3 dated 2020-12-03 and 1.2-4 dated 2022-05-10
streamMOA-1.2-3/streamMOA/R/DSC_MCOD.R |only streamMOA-1.2-3/streamMOA/man/DSC_MCOD.Rd |only streamMOA-1.2-3/streamMOA/man/DSC_streamkm.Rd |only streamMOA-1.2-4/streamMOA/DESCRIPTION | 11 streamMOA-1.2-4/streamMOA/MD5 | 56 +-- streamMOA-1.2-4/streamMOA/NAMESPACE | 18 - streamMOA-1.2-4/streamMOA/NEWS.md | 5 streamMOA-1.2-4/streamMOA/R/DSC_BICO_MOA.R | 111 ++++--- streamMOA-1.2-4/streamMOA/R/DSC_CluStream.R | 94 ++++- streamMOA-1.2-4/streamMOA/R/DSC_ClusTree.R | 57 +++ streamMOA-1.2-4/streamMOA/R/DSC_DStream_MOA.R | 101 ++++-- streamMOA-1.2-4/streamMOA/R/DSC_DenStream.R | 114 +++++-- streamMOA-1.2-4/streamMOA/R/DSC_MOA.R | 18 + streamMOA-1.2-4/streamMOA/R/DSC_streamkm.R | 31 + streamMOA-1.2-4/streamMOA/R/DSD_RandomRBFGeneratorEvents.R | 158 ++++++---- streamMOA-1.2-4/streamMOA/R/DSOutlier_MCOD.R |only streamMOA-1.2-4/streamMOA/R/onLoad.R | 13 streamMOA-1.2-4/streamMOA/build/partial.rdb |binary streamMOA-1.2-4/streamMOA/build/vignette.rds |binary streamMOA-1.2-4/streamMOA/inst/doc/streamMOA.R | 19 - streamMOA-1.2-4/streamMOA/inst/doc/streamMOA.Rnw | 17 - streamMOA-1.2-4/streamMOA/inst/doc/streamMOA.pdf |binary streamMOA-1.2-4/streamMOA/man/DSC_BICO_MOA.Rd | 38 +- streamMOA-1.2-4/streamMOA/man/DSC_CluStream.Rd | 81 ++--- streamMOA-1.2-4/streamMOA/man/DSC_ClusTree.Rd | 80 ++--- streamMOA-1.2-4/streamMOA/man/DSC_DStream_MOA.Rd | 31 + streamMOA-1.2-4/streamMOA/man/DSC_DenStream.Rd | 122 ++++--- streamMOA-1.2-4/streamMOA/man/DSC_MOA.Rd | 30 + streamMOA-1.2-4/streamMOA/man/DSC_StreamKM.Rd |only streamMOA-1.2-4/streamMOA/man/DSD_RandomRBFGeneratorEvents.Rd | 127 ++++---- streamMOA-1.2-4/streamMOA/man/DSOutlier_MCOD.Rd |only streamMOA-1.2-4/streamMOA/vignettes/streamMOA.Rnw | 17 - 32 files changed, 868 insertions(+), 481 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893 and NIH R21HG005912. Hahsler et al (2017) <doi:10.18637/jss.v076.i14>.
Author: Michael Hahsler [aut, cre, cph],
Matthew Bolanos [aut],
John Forrest [ctb],
Matthias Carnein [ctb],
Dennis Assenmacher [ctb],
Dalibor Krleža [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 1.5-0 dated 2021-09-07 and 1.5-1 dated 2022-05-10
stream-1.5-0/stream/R/AAAregistry.R |only stream-1.5-0/stream/man/DSC_Outlier.Rd |only stream-1.5-0/stream/man/DSC_SinglePass.Rd |only stream-1.5-0/stream/man/DSO_Sampling.Rd |only stream-1.5-0/stream/man/DefaultEvalCallback.Rd |only stream-1.5-0/stream/man/EvalCallback.Rd |only stream-1.5-0/stream/man/animation.Rd |only stream-1.5-0/stream/man/clean_outliers.Rd |only stream-1.5-0/stream/man/get_centers.Rd |only stream-1.5-0/stream/man/get_copy.Rd |only stream-1.5-0/stream/man/get_weights.Rd |only stream-1.5-0/stream/man/nclusters.Rd |only stream-1.5-0/stream/man/plot.Rd |only stream-1.5-0/stream/man/save.Rd |only stream-1.5-0/stream/man/update.Rd |only stream-1.5-1/stream/DESCRIPTION | 15 stream-1.5-1/stream/MD5 | 251 +-- stream-1.5-1/stream/NAMESPACE | 52 stream-1.5-1/stream/NEWS.md | 11 stream-1.5-1/stream/R/AAA.R | 20 stream-1.5-1/stream/R/DSC.R | 228 +-- stream-1.5-1/stream/R/DSC_BICO.R | 77 - stream-1.5-1/stream/R/DSC_BIRCH.R | 61 stream-1.5-1/stream/R/DSC_DBSCAN.R | 160 +- stream-1.5-1/stream/R/DSC_DBSTREAM.R | 125 + stream-1.5-1/stream/R/DSC_DStream.R | 129 + stream-1.5-1/stream/R/DSC_EA.R | 66 stream-1.5-1/stream/R/DSC_Hierarchical.R | 62 stream-1.5-1/stream/R/DSC_Kmeans.R | 54 stream-1.5-1/stream/R/DSC_Macro.R | 67 stream-1.5-1/stream/R/DSC_Micro.R | 23 stream-1.5-1/stream/R/DSC_R.R | 2 stream-1.5-1/stream/R/DSC_Reachability.R | 63 stream-1.5-1/stream/R/DSC_Sample.R | 71 stream-1.5-1/stream/R/DSC_Static.R | 48 stream-1.5-1/stream/R/DSC_TwoStage.R | 55 stream-1.5-1/stream/R/DSC_Window.R | 46 stream-1.5-1/stream/R/DSC_evoStream.R | 90 - 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stream-1.5-1/stream/src/BIRCH.cpp | 12 stream-1.5-1/stream/src/BIRCH/CFTree.cpp | 36 stream-1.5-1/stream/src/BIRCH/CFTree.hpp | 14 stream-1.5-1/stream/src/BIRCH/ClusteringFeature.cpp | 10 stream-1.5-1/stream/src/BIRCH/ClusteringFeature.hpp | 2 stream-1.5-1/stream/tests/testthat/test-DSC_BIRCH.R | 2 stream-1.5-1/stream/vignettes/dst_uml.odg |binary stream-1.5-1/stream/vignettes/dst_uml.pdf |binary stream-1.5-1/stream/vignettes/stream.Rnw | 10 140 files changed, 6096 insertions(+), 2791 deletions(-)
Title: Integrated Stratigraphy
Description: Includes bases for litholog generation: graphical functions
based on R base graphics, interval management functions and svg importation
functions among others. Also include stereographic projection functions,
and other functions made to deal with large datasets while keeping options
to get into the details of the data.
When using for publication please cite
Sebastien Wouters, Anne-Christine Da Silva, Frederic Boulvain and
Xavier Devleeschouwer, 2021. The R Journal 13:2, 153-178.
The palaeomagnetism functions are based on:
Tauxe, L., 2010. Essentials of Paleomagnetism. University of California
Press. <https://earthref.org/MagIC/books/Tauxe/Essentials/>;
Allmendinger, R. W., Cardozo, N. C., and Fisher, D., 2013, Structural
Geology Algorithms: Vectors & Tensors: Cambridge, England, Cambridge
University Press, 289 pp.;
Cardozo, N., and Allmendinger, R. W., 2013, Spherical projections
with OSXStereonet: Computers & Geosciences, v. 51, no. 0, p. 193 - 205,
<doi: 10.1016/j.cageo.2012.07.021>.
Author: Sebastien Wouters [aut, cre], Adam D. Smith [ctb]
Maintainer: Sebastien Wouters <wouterseb@gmail.com>
Diff between StratigrapheR versions 1.2.4 dated 2021-09-25 and 1.2.5 dated 2022-05-10
DESCRIPTION | 11 ++++++----- MD5 | 31 ++++++++++++++++--------------- NEWS | 4 ++++ R/StratigrapheR.R | 5 +++-- R/changesvg.R | 4 +++- R/dipfix.R | 4 ++-- R/enlarge.R | 2 +- R/flip.lim.R | 2 +- R/litholog.R | 2 +- R/neatPick.R | 8 ++++---- R/pointsvg.R | 2 +- R/zijderveld.R | 6 +++--- README.md | 8 ++++++++ inst |only man/StratigrapheR.Rd | 5 +++-- man/litholog.Rd | 2 +- man/pointsvg.Rd | 2 +- 17 files changed, 58 insertions(+), 40 deletions(-)
Title: State Space Modelling in 'R'
Description: A tool that makes estimating models in state space form
a breeze. See "Time Series Analysis by State Space Methods" by
Durbin and Koopman (2012, ISBN: 978-0-19-964117-8) for details
about the algorithms implemented.
Author: Dylan Beijers [aut, cre]
Maintainer: Dylan Beijers <dylanbeijers@gmail.com>
Diff between statespacer versions 0.4.0 dated 2020-11-19 and 0.4.1 dated 2022-05-10
DESCRIPTION | 14 +++-- MD5 | 27 ++++++----- NEWS.md | 6 ++ R/FedYieldCurve.R |only build/partial.rdb |binary data |only inst/REFERENCES.bib | 10 ---- inst/doc/boxjenkins.html | 62 ++++++-------------------- inst/doc/dictionary.html | 41 ----------------- inst/doc/intro.html | 56 +++++------------------ inst/doc/seatbelt.html | 68 ++++++++-------------------- inst/doc/selfspec.R | 7 +- inst/doc/selfspec.Rmd | 11 ++-- inst/doc/selfspec.html | 111 ++++++++++++++--------------------------------- man/FedYieldCurve.Rd |only vignettes/selfspec.Rmd | 11 ++-- 16 files changed, 127 insertions(+), 297 deletions(-)
Title: Modelling the Population Dynamics of a Stage-Structured Species
in Continuous Time
Description: Provides facilities to implement and run population models of
stage-structured species...
Author: Helen Kettle
Maintainer: David Nutter <david.nutter@bioss.ac.uk>
Diff between stagePop versions 1.1-1 dated 2015-05-12 and 1.1-2 dated 2022-05-10
DESCRIPTION | 17 ++++++----- MD5 | 60 ++++++++++++++++++++--------------------- NAMESPACE | 2 - R/genericPlot.R | 44 +++++++++++++++--------------- R/plotStrains.R | 20 ++++++------- R/popModel.R | 13 ++------ build/vignette.rds |binary inst/DemoFiles/BlowFlies.R | 5 +-- inst/DemoFiles/Briggs.R | 4 +- inst/DemoFiles/ClimateChange.R | 12 ++------ inst/DemoFiles/PredPrey1.R | 1 inst/DemoFiles/VarDurEnv.R | 3 -- inst/DemoFiles/VarDurFood.R | 2 - man/RateFunctions.Rd | 6 ++-- man/SolverOptions.Rd | 4 +- man/checkSolution.Rd | 4 +- man/deathFuncDefault.Rd | 6 ++-- man/defaultRateFunctions.Rd | 15 +++------- man/derivDede.Rd | 4 +- man/derivPBS.Rd | 4 +- man/develFuncDefault.Rd | 6 ++-- man/durationFuncDefault.Rd | 6 ++-- man/emigrationFuncDefault.Rd | 6 ++-- man/genericPlot.Rd | 16 ++++++++-- man/immigrationFuncDefault.Rd | 6 ++-- man/popModel.Rd | 55 ++++++++++++++++++++++++------------- man/rateFuncCheck.Rd | 19 +++++++++--- man/reproFuncDefault.Rd | 6 ++-- man/runStagePopExample.Rd | 4 +- man/stagePop-package.Rd | 12 ++++---- man/sumStrains.Rd | 16 ++++++++-- 31 files changed, 199 insertions(+), 179 deletions(-)
Title: Bayesian Graph Structure Learning using Spike-and-Slab Priors
Description: Bayesian estimation for undirected graphical models using spike-and-slab priors. The package handles continuous, discrete, and mixed data.
Author: Reza Mohammadi [aut, cre]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between ssgraph versions 1.12 dated 2020-05-24 and 1.13 dated 2022-05-10
DESCRIPTION | 11 +++++--- MD5 | 16 ++++++++----- NEWS.md | 4 ++- R/ssgraph.R | 70 +++++++++++++++++++++++++++++---------------------------- README.md | 36 ++++++----------------------- build |only inst/doc |only man/figures |only man/ssgraph.Rd | 2 - vignettes |only 10 files changed, 66 insertions(+), 73 deletions(-)
Title: Extra Functionality for 'leaflet' Package
Description: Several 'leaflet' plugins are integrated, which are available as extension to the 'leaflet' package.
Author: Gatscha Sebastian [aut, cre],
Ricardo Rodrigo Basa [ctb],
Jeffrey O Hanson [ctb]
Maintainer: Gatscha Sebastian <sebastian_gatscha@gmx.at>
Diff between leaflet.extras2 versions 1.1.0 dated 2020-10-20 and 1.2.0 dated 2022-05-10
DESCRIPTION | 19 MD5 | 200 +- NAMESPACE | 25 NEWS.md | 21 R/antpath.R | 22 R/arrowhead.R |only R/contextmenu.R | 97 - R/easyprint.R | 44 R/history.R | 13 R/labelgun.R |only R/leafletsync.R |only R/mapkeyIcon.R | 8 R/movingmarker.R |only R/playback.R | 84 R/sidebar.R | 52 R/spin.R |only R/timeslider.R | 70 R/velocity.R | 10 R/wms.R | 5 inst/examples/antpath_app.R | 3 inst/examples/arrowhead_app.R |only inst/examples/contextmenu_app.R | 75 inst/examples/easyprint_app.R | 71 inst/examples/gibs_app.R | 4 inst/examples/heightgraph_app.R | 3 inst/examples/hexbin_app.R | 45 inst/examples/labelgun_app.R |only inst/examples/leafletsync |only inst/examples/movingmarker_app.R |only inst/examples/multi_sidebar_app.R |only inst/examples/playback_app.R | 63 inst/examples/side_by_side_app.R | 12 inst/examples/sidebar_app.R | 12 inst/examples/spin_app.R |only inst/examples/tangram/tangram_app.R | 11 inst/examples/timeslider_app.R | 48 inst/examples/wms_popup.R | 4 inst/htmlwidgets/lfx-arrowhead |only inst/htmlwidgets/lfx-contextmenu/leaflet.contextmenu-bindings.js | 36 inst/htmlwidgets/lfx-easyprint/FileSaver.js |only inst/htmlwidgets/lfx-easyprint/dom-to-image.js |only inst/htmlwidgets/lfx-easyprint/lfx-easyprint-bindings.js | 24 inst/htmlwidgets/lfx-easyprint/lfx-easyprint_full.js |only inst/htmlwidgets/lfx-labelgun |only inst/htmlwidgets/lfx-leafletsync |only inst/htmlwidgets/lfx-movingmarker |only inst/htmlwidgets/lfx-playback/leaflet.playback-bindings.js | 34 inst/htmlwidgets/lfx-playback/leaflet.playback.js | 935 ++++------ inst/htmlwidgets/lfx-sidebar/leaflet-sidebar-binding.js | 100 - inst/htmlwidgets/lfx-sidebar/leaflet-sidebar.css | 326 +-- inst/htmlwidgets/lfx-sidebar/leaflet-sidebar.js | 4 inst/htmlwidgets/lfx-spin |only inst/htmlwidgets/lfx-timeslider/jquery-ui.css | 294 +-- inst/htmlwidgets/lfx-timeslider/leaflet.SliderControl-bindings.js | 94 - inst/htmlwidgets/lfx-timeslider/leaflet.SliderControl.min.js | 220 ++ inst/htmlwidgets/lfx-wms/leaflet.wms-bindings.js | 26 man/addAntpath.Rd | 2 man/addArrowhead.Rd |only man/addContextmenu.Rd | 31 man/addHeightgraph.Rd | 2 man/addItemContextmenu.Rd | 3 man/addLabelgun.Rd |only man/addLeafletsync.Rd |only man/addLeafletsyncDependency.Rd |only man/addMovingMarker.Rd |only man/addPlayback.Rd | 52 man/addSidebar.Rd | 17 man/addSpinner.Rd |only man/addTimeslider.Rd | 64 man/addVelocity.Rd | 8 man/addWMS.Rd | 5 man/arrowheadOptions.Rd |only man/clearArrowhead.Rd |only man/closeSidebar.Rd | 5 man/context_mapmenuItems.Rd |only man/context_markermenuItems.Rd |only man/context_menuItem.Rd |only man/easyprintMap.Rd | 7 man/easyprintOptions.Rd | 21 man/hideContextmenu.Rd | 3 man/insertItemContextmenu.Rd | 7 man/isSynced.Rd |only man/leafletsyncOptions.Rd |only man/makeMapkeyIcon.Rd | 8 man/mapkeyIcons.Rd | 8 man/mapmenuItems.Rd | 3 man/markermenuItems.Rd | 3 man/menuItem.Rd | 12 man/movingMarkerOptions.Rd |only man/openSidebar.Rd | 7 man/playbackOptions.Rd | 16 man/removeArrowhead.Rd |only man/removeItemContextmenu.Rd | 7 man/removeSidebar.Rd | 5 man/removeallItemsContextmenu.Rd | 3 man/setDisabledContextmenu.Rd | 7 man/showContextmenu.Rd | 3 man/sidebar_tabs.Rd | 8 man/startMoving.Rd |only man/timesliderOptions.Rd | 10 man/to_jsonformat.Rd | 8 man/to_ms.Rd | 2 man/unsync.Rd |only man/velocityOptions.Rd | 2 tests/testthat/test-arrowhead.R |only tests/testthat/test-contextmenu.R | 60 tests/testthat/test-easyprint.R | 15 tests/testthat/test-heightgraph.R | 6 tests/testthat/test-labelgun.R |only tests/testthat/test-leafletsync.R |only tests/testthat/test-movingmarker.R |only tests/testthat/test-playback.R | 31 tests/testthat/test-spin.R |only tests/testthat/test-timeslider.R | 36 114 files changed, 2310 insertions(+), 1291 deletions(-)
More information about leaflet.extras2 at CRAN
Permanent link
Title: Compute Statistics Helper Functions
Description: A small package containing helper utilities for creating functions
for computing statistics.
Author: Andrew Redd <Andrew.Redd@hsc.utah.edu>
Maintainer: Andrew Redd <Andrew.Redd@hsc.utah.edu>
Diff between dostats versions 1.3.2 dated 2015-05-29 and 1.3.3 dated 2022-05-10
DESCRIPTION | 14 +- MD5 | 58 +++++------ NAMESPACE | 8 + NEWS | 77 +++++++------- R/collect.R | 108 ++++++++++---------- R/compose.R | 34 +++--- R/dostats.R | 58 +++++------ R/onarg.R | 128 ++++++++++++------------ R/pval.R | 168 ++++++++++++++++--------------- R/utils.R | 242 +++++++++++++++++++++++----------------------- R/wargs.R | 162 +++++++++++++++--------------- README.md | 36 +++--- man/T.Rd | 3 man/capply.Rd | 3 man/class.stats.Rd | 17 ++- man/collect.Rd | 7 - man/compose.Rd | 16 +-- man/contains.Rd | 9 - man/dostats.Rd | 8 - man/fill_v.Rd | 3 man/head-tail-utils.Rd.Rd | 3 man/listrows.Rd | 3 man/make_call.Rd | 7 - man/make_new_id.Rd | 3 man/me.Rd | 3 man/onarg.Rd | 5 man/pval.Rd | 13 +- man/redirf.Rd | 7 - man/seq_consecutive.Rd | 3 man/wargs.Rd | 11 -- 30 files changed, 613 insertions(+), 604 deletions(-)
Title: Circular Visualization
Description: Circular layout is an efficient way for the visualization of huge
amounts of information. Here this package provides an implementation
of circular layout generation in R as well as an enhancement of available
software. The flexibility of the package is based on the usage of low-level
graphics functions such that self-defined high-level graphics can be easily
implemented by users for specific purposes. Together with the seamless
connection between the powerful computational and visual environment in R,
it gives users more convenience and freedom to design figures for
better understanding complex patterns behind multiple dimensional data.
The package is described in Gu et al. 2014 <doi:10.1093/bioinformatics/btu393>.
Author: Zuguang Gu [aut, cre]
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between circlize versions 0.4.14 dated 2022-02-11 and 0.4.15 dated 2022-05-10
DESCRIPTION | 8 +- MD5 | 24 +++--- NAMESPACE | 3 NEWS | 9 ++ R/circos.heatmap.R | 4 - R/genomic.R | 53 +++++++++---- R/genomic_utils.R | 4 - R/global.R | 7 - R/link.R | 7 + R/low_level.R | 16 ++++ R/plot.R | 38 ++++++--- R/utils.R | 208 ++++++++++++++++++++++++++++++----------------------- man/colorRamp2.Rd | 7 + 13 files changed, 247 insertions(+), 141 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-17 0.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-03-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-12-18 0.1.0
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2011-05-25 1.0
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2013-04-07 0.2
2011-10-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-02-24 0.03
2009-12-16 0.02
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-10-08 1.0
2011-02-18 0.5.1
2009-10-06 0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-20 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-16 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-12-31 1.0.1
2013-10-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-21 1.1
2014-03-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-09-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-29 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-10 1.1
2009-12-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-02-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-01-10 1.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-01 1.0
Title: Spatial Models for Limited Dependent Variables
Description: The current version of this package estimates spatial autoregressive models for binary dependent variables using GMM estimators. It supports one-step (Pinkse and Slade, 1998) <doi:10.1016/S0304-4076(97)00097-3> and two-step GMM estimator along with the linearized GMM estimator proposed by Klier and McMillen (2008) <doi:10.1198/073500107000000188>. It also allows for either Probit or Logit model and compute the average marginal effects.
Author: Mauricio Sarrias [aut, cre] ,
Gianfranco Piras [aut] ,
Daniel McMillen [ctb]
Maintainer: Mauricio Sarrias <msarrias86@gmail.com>
Diff between spldv versions 0.1.0 dated 2022-03-22 and 0.1.1 dated 2022-05-10
spldv-0.1.0/spldv/man/effect.bingmm.Rd |only spldv-0.1.1/spldv/DESCRIPTION | 12 +- spldv-0.1.1/spldv/MD5 | 20 ++-- spldv-0.1.1/spldv/NAMESPACE | 10 +- spldv-0.1.1/spldv/R/marginalEffects.R | 125 ++++++++++++++++++++++++----- spldv-0.1.1/spldv/R/sbinaryGMM.R | 71 +++++++++------- spldv-0.1.1/spldv/R/sbinaryLGMM.R | 19 ++-- spldv-0.1.1/spldv/inst |only spldv-0.1.1/spldv/man/getSummary.bingmm.Rd | 15 --- spldv-0.1.1/spldv/man/impacts.Rd |only spldv-0.1.1/spldv/man/impacts.bingmm.Rd |only spldv-0.1.1/spldv/man/sbinaryGMM.Rd | 7 + spldv-0.1.1/spldv/man/sbinaryLGMM.Rd | 2 13 files changed, 188 insertions(+), 93 deletions(-)
Title: Fit Semiparametric Mixture Cure Models
Description: An R-package for Estimating Semiparametric PH and AFT Mixture Cure Models.
Author: Chao Cai, Yubo Zou, Yingwei Peng, Jiajia Zhang
Maintainer: Chao Cai <caic@email.sc.edu>
Diff between smcure versions 2.0 dated 2012-09-26 and 2.1 dated 2022-05-10
smcure-2.0/smcure/man/smcure-package.Rd |only smcure-2.0/smcure/man/smrank.Rd |only smcure-2.1/smcure/DESCRIPTION | 18 +- smcure-2.1/smcure/MD5 | 28 +-- smcure-2.1/smcure/NAMESPACE | 13 + smcure-2.1/smcure/R/em.R | 2 smcure-2.1/smcure/R/smcure.R | 211 ++++++++++++++++------------- smcure-2.1/smcure/man/bmt.Rd | 18 -- smcure-2.1/smcure/man/coefsmcure.Rd | 6 smcure-2.1/smcure/man/e1684.Rd | 8 - smcure-2.1/smcure/man/em.Rd | 8 - smcure-2.1/smcure/man/plotpredictsmcure.Rd | 13 - smcure-2.1/smcure/man/predictsmcure.Rd | 10 - smcure-2.1/smcure/man/printsmcure.Rd | 7 smcure-2.1/smcure/man/smcure.Rd | 109 +++++--------- smcure-2.1/smcure/man/smsurv.Rd | 7 16 files changed, 228 insertions(+), 230 deletions(-)
Title: Busy Indicators and Notifications for 'Shiny' Applications
Description: Add indicators (spinner, progress bar, gif) in your 'shiny'
applications to show the user that the server is busy. And other tools to let
your users know something is happening (send notifications, reports, ...).
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Silex Technologies [fnd]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinybusy versions 0.3.0 dated 2022-02-22 and 0.3.1 dated 2022-05-10
DESCRIPTION | 6 +-- MD5 | 28 ++++++++-------- NEWS.md | 6 +++ R/busy-bar.R | 3 - R/busy-gif.R | 3 - R/dependencies.R | 2 - inst/assets/spinkit/spin.css | 43 ------------------------- inst/assets/spinkit/spin.min.css | 2 - inst/doc/shinybusy.html | 1 inst/doc/spinners.html | 65 +++++++++++++++++++-------------------- inst/packer/busy.js | 8 ++-- man/add_busy_bar.Rd | 38 +++++++++++----------- man/add_busy_gif.Rd | 40 ++++++++++++------------ man/manual-gif.Rd | 48 ++++++++++++++-------------- man/manual-progressbar.Rd | 48 ++++++++++++++-------------- 15 files changed, 152 insertions(+), 189 deletions(-)
Title: Useful Tools for Structural Equation Modeling
Description: Provides tools for structural equation modeling, many of which extend the 'lavaan' package; for example, to pool results from multiple imputations, probe latent interactions, or test measurement invariance.
Author: Terrence D. Jorgensen [aut, cre]
,
Sunthud Pornprasertmanit [aut],
Alexander M. Schoemann [aut] ,
Yves Rosseel [aut] ,
Patrick Miller [ctb],
Corbin Quick [ctb],
Mauricio Garnier-Villarreal [ctb]
,
James Selig [ctb],
Aaron Boulton [ctb],
Kristopher Pr [...truncated...]
Maintainer: Terrence D. Jorgensen <TJorgensen314@gmail.com>
Diff between semTools versions 0.5-5 dated 2021-07-07 and 0.5-6 dated 2022-05-10
semTools-0.5-5/semTools/man/reliability.Rd |only semTools-0.5-5/semTools/man/reliabilityL2.Rd |only semTools-0.5-6/semTools/DESCRIPTION | 16 semTools-0.5-6/semTools/MD5 | 94 semTools-0.5-6/semTools/NAMESPACE | 2 semTools-0.5-6/semTools/NEWS.md | 16 semTools-0.5-6/semTools/R/PAVranking.R | 3 semTools-0.5-6/semTools/R/compareFit.R | 24 semTools-0.5-6/semTools/R/fitIndices.R | 205 +- semTools-0.5-6/semTools/R/htmt.R | 61 semTools-0.5-6/semTools/R/measEq.R | 9 semTools-0.5-6/semTools/R/measurementInvariance.R | 4 semTools-0.5-6/semTools/R/miPowerFit.R | 182 - semTools-0.5-6/semTools/R/missingBootstrap.R | 10 semTools-0.5-6/semTools/R/monteCarloCI.R | 84 semTools-0.5-6/semTools/R/permuteMeasEq.R | 23 semTools-0.5-6/semTools/R/plausibleValues.R | 201 +- semTools-0.5-6/semTools/R/powerAnalysisRMSEA.R | 40 semTools-0.5-6/semTools/R/powerAnalysisSS.R | 8 semTools-0.5-6/semTools/R/probeInteraction.R | 65 semTools-0.5-6/semTools/R/reliability.R | 1590 +++++++++++++++- semTools-0.5-6/semTools/R/runMI-modification.R | 6 semTools-0.5-6/semTools/R/runMI-score.R | 6 semTools-0.5-6/semTools/R/semTools.R | 10 semTools-0.5-6/semTools/build/partial.rdb |binary semTools-0.5-6/semTools/build/vignette.rds |binary semTools-0.5-6/semTools/inst/CITATION | 2 semTools-0.5-6/semTools/inst/doc/partialInvariance.pdf |binary semTools-0.5-6/semTools/man/AVE.Rd |only semTools-0.5-6/semTools/man/FitDiff-class.Rd | 5 semTools-0.5-6/semTools/man/SSpower.Rd | 6 semTools-0.5-6/semTools/man/compRelSEM.Rd |only semTools-0.5-6/semTools/man/compareFit.Rd | 2 semTools-0.5-6/semTools/man/findRMSEApower.Rd | 8 semTools-0.5-6/semTools/man/findRMSEAsamplesize.Rd | 5 semTools-0.5-6/semTools/man/htmt.Rd | 42 semTools-0.5-6/semTools/man/miPowerFit.Rd | 133 - semTools-0.5-6/semTools/man/monteCarloCI.Rd | 39 semTools-0.5-6/semTools/man/moreFitIndices.Rd | 133 - semTools-0.5-6/semTools/man/permuteMeasEq.Rd | 11 semTools-0.5-6/semTools/man/plausibleValues.Rd | 12 semTools-0.5-6/semTools/man/plotProbe.Rd | 5 semTools-0.5-6/semTools/man/plotRMSEApower.Rd | 11 semTools-0.5-6/semTools/man/probe2WayMC.Rd | 8 semTools-0.5-6/semTools/man/probe2WayRC.Rd | 8 semTools-0.5-6/semTools/man/probe3WayMC.Rd | 8 semTools-0.5-6/semTools/man/probe3WayRC.Rd | 8 semTools-0.5-6/semTools/man/reliability-deprecated.Rd |only semTools-0.5-6/semTools/man/reliabilityL2-deprecated.Rd |only semTools-0.5-6/semTools/man/semTools-deprecated.Rd | 39 semTools-0.5-6/semTools/man/semTools.Rd | 8 51 files changed, 2603 insertions(+), 549 deletions(-)
Title: Credit Risk Scorecard
Description: The `scorecard` package makes the development of credit risk scorecard
easier and efficient by providing functions for some common tasks,
such as data partition, variable selection, woe binning, scorecard scaling,
performance evaluation and report generation. These functions can also used
in the development of machine learning models.
The references including:
1. Refaat, M. (2011, ISBN: 9781447511199). Credit Risk Scorecard:
Development and Implementation Using SAS.
2. Siddiqi, N. (2006, ISBN: 9780471754510). Credit risk scorecards.
Developing and Implementing Intelligent Credit Scoring.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between scorecard versions 0.3.6 dated 2021-11-29 and 0.3.7 dated 2022-05-10
DESCRIPTION | 6 - MD5 | 21 ++--- NEWS.md | 5 + R/condition_fun.R | 97 ++++++++++++++----------- R/perf.R | 10 +- R/scorecard.R | 32 +++++--- R/woebin.R | 195 +++++++++++++++++++++++++++------------------------ R/zzz.R |only man/scorecard.Rd | 5 - man/scorecard2.Rd | 5 - man/scorecard_ply.Rd | 5 - man/woebin.Rd | 1 12 files changed, 220 insertions(+), 162 deletions(-)
Title: Functions and Datasets for Math Used in School
Description: Contains functions and datasets for math taught in school.
A main focus is set to prime-calculation.
Author: Joerg grosse Schlarmann, Josef Wienand
Maintainer: Joerg grosse Schlarmann <schlarmann@produnis.de>
Diff between schoolmath versions 0.4 dated 2009-10-26 and 0.4.1 dated 2022-05-10
DESCRIPTION | 22 ++++++++++++---------- MD5 |only NAMESPACE |only NEWS.md |only R/data.R |only R/prime.factor.R | 2 +- README.md |only data/datalist |only data/primlist.rda |binary man/is.decimal.Rd | 6 +++--- man/is.even.Rd | 6 +++--- man/is.negative.Rd | 8 ++++---- man/is.odd.Rd | 8 ++++---- man/is.positive.Rd | 8 ++++---- man/is.prim.Rd | 6 +++--- man/is.real.positive.Rd | 8 ++++---- man/is.whole.Rd | 6 +++--- man/primlist.Rd | 2 +- 18 files changed, 42 insertions(+), 40 deletions(-)
Title: 'SAS' Linear Model
Description: This is a core implementation of 'SAS' procedures for linear models - GLM, REG, and ANOVA. Some R packages provide type II and type III SS. However, the results of nested and complex designs are often different from those of 'SAS.' Different results does not necessarily mean incorrectness. However, many wants the same results to SAS. This package aims to achieve that.
Reference: Littell RC, Stroup WW, Freund RJ (2002, ISBN:0-471-22174-0).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between sasLM versions 0.8.0 dated 2022-03-20 and 0.8.1 dated 2022-05-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- inst/NEWS.Rd | 6 ++++++ inst/doc/sasLM-manual.pdf |binary man/satt.Rd | 4 ++-- 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Hierarchical Bayes Twofold Subarea Level Model SAE
Description: We designed this package to provides several functions for area and subarea level of small area estimation under Twofold Subarea Level Model using hierarchical Bayesian (HB) method with Univariate Normal distribution for variables of interest. Some dataset simulated by a data generation are also provided. The 'rjags' package is employed to obtain parameter estimates using Gibbs Sampling algorithm. Model-based estimators involves the HB estimators which include the mean, the variation of mean, and the quantile. For the reference, see Rao and Molina (2015) <doi:10.1002/9781118735855>, Torabi and Rao (2014) <doi:10.1016/j.jmva.2014.02.001>, Leyla Mohadjer et al.(2007) <http://www.asasrms.org/Proceedings/y2007/Files/JSM2007-000559.pdf>, and Erciulescu et al.(2019) <doi:10.1111/rssa.12390>.
Author: Reyhan Saadi [aut, cre],
Azka Ubaidillah [aut]
Maintainer: Reyhan Saadi <221810557@stis.ac.id>
Diff between saeHB.twofold versions 0.1.0 dated 2022-02-28 and 0.1.1 dated 2022-05-10
DESCRIPTION | 12 MD5 | 24 R/NormalTF.R | 38 R/dataTwofold.R | 20 R/dataTwofoldNs.R | 12 README.md | 2 inst/doc/Twofold.R | 9 inst/doc/Twofold.Rmd | 12 inst/doc/Twofold.html | 2488 +++++++++++++++++++++++++++++++++++++++++++++----- man/NormalTF.Rd | 8 man/dataTwofold.Rd | 20 man/dataTwofoldNS.Rd | 12 vignettes/Twofold.Rmd | 12 13 files changed, 2337 insertions(+), 332 deletions(-)
Title: Small Area Estimation using Hierarchical Bayesian Method for Rao
Yu Model
Description: We designed this package to provide several functions for area level of small area estimation using hierarchical Bayesian (HB) method. This package provides model using panel data for variable interest.This package also provides a dataset produced by a data generation. The 'rjags' package is employed to obtain parameter estimates. Model-based estimators involves the HB estimators which include the mean and the variation of mean. For the reference, see Rao and Molina (2015).
Author: Velia Tri Marliana [aut, cre], Azka Ubaidillah [aut]
Maintainer: Velia Tri Marliana <221810642@stis.ac.id>
Diff between saeHB.panel versions 0.1.0 dated 2022-03-03 and 0.1.1 dated 2022-05-10
DESCRIPTION | 6 MD5 | 24 +- R/Panel.R | 188 +++++++++++++++++++-- R/RaoYuAr1.R | 190 +++++++++++++++++++--- R/dataAr1.R | 62 +++---- R/dataAr1Ns.R | 38 ++-- R/dataPanel.R | 60 +++--- R/dataPanelNs.R | 38 ++-- inst/doc/Panel.Rmd | 138 +++++++-------- inst/doc/Panel.html | 449 +++++++++++++++++++++++++++++++++++++--------------- man/Panel.Rd | 2 man/RaoYuAr1.Rd | 2 vignettes/Panel.Rmd | 138 +++++++-------- 13 files changed, 918 insertions(+), 417 deletions(-)
Title: Smooth Survival Models, Including Generalized Survival Models
Description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0(t)=exp(-exp(eta_0(t))) is modelled for natural splines for eta_0, and the time-dependent cumulative acceleration factor eta(t,x)=\int_0^t exp(eta_1(u,x)) du for log acceleration factor eta_1(u,x). The Markov multi-state models allow for a range of models with smooth transitions to predict transition probabilities, length of stay, utilities and costs, with differences, ratios and standardisation.
Author: Mark Clements [aut, cre],
Xing-Rong Liu [aut],
Benjamin Christoffersen [aut],
Paul Lambert [ctb],
Lasse Hjort Jakobsen [ctb],
Alessandro Gasparini [ctb],
Gordon Smyth [cph],
Patrick Alken [cph],
Simon Wood [cph],
Rhys Ulerich [cph]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between rstpm2 versions 1.5.5 dated 2022-04-19 and 1.5.6 dated 2022-05-10
DESCRIPTION | 8 +- MD5 | 28 ++++----- NAMESPACE | 2 R/aft.R | 2 R/multistate.R | 34 +++++++++++ R/pm2-3.R | 36 ++++++++--- inst/doc/Introduction.pdf |binary inst/doc/SimpleGuide.pdf |binary inst/doc/multistate.pdf |binary inst/doc/predictnl.pdf |binary inst/working_code.R | 139 ++++++++++++++++++++++++++++++++++++++++++++++ man/gsm.Rd | 7 +- man/lines.Rd | 7 +- man/plot-methods.Rd | 7 +- man/predict-methods.Rd | 7 +- 15 files changed, 237 insertions(+), 40 deletions(-)
Title: Phylogenetic Ridge Regression Methods for Comparative Studies
Description: Functions for phylogenetic analysis (Castiglione et al., 2018 <doi:10.1111/2041-210X.12954>). The functions perform the estimation of phenotypic evolutionary rates, identification of phenotypic evolutionary rate shifts, quantification of direction and size of evolutionary change in multivariate traits, the computation of ontogenetic shape vectors and test for morphological convergence.
Author: Pasquale Raia, Silvia Castiglione, Carmela Serio, Alessandro Mondanaro, Marina Melchionna, Mirko Di Febbraro, Antonio Profico, Francesco Carotenuto
Maintainer: Pasquale Raia <pasquale.raia@unina.it>
Diff between RRphylo versions 2.6.0 dated 2022-01-20 and 2.6.3 dated 2022-05-10
DESCRIPTION | 14 MD5 | 138 +- NAMESPACE | 10 R/PGLS_fossil.R | 13 R/RRphylo.R | 510 +++------- R/StableTraitsR.R | 8 R/angle.matrix.R | 2 R/auxilliary.functions.R | 4 R/conv.map.R | 2 R/cutPhylo.R | 12 R/distNodes.R | 127 +- R/evo.dir.R | 3 R/fix.poly.R | 18 R/geiger_functions.R |only R/getGenus.R | 25 R/makeL.R | 11 R/makeL1.R | 12 R/overfitRR.R | 536 +++------- R/phyloclust.R | 3 R/plotRates.R | 14 R/plotTrend.R |only R/random.evolvability.test.R | 12 R/rate.map.R | 2 R/rescaleRR.R | 153 ++- R/scaleTree.R | 191 ++- R/search.conv.R | 46 R/search.shift.R | 19 R/search.trend.R | 2014 +++++++++++----------------------------- R/swap.phylo.R | 2 R/swapONE.R | 8 R/tree.merger.R | 58 - build/vignette.rds |binary inst/CITATION | 38 inst/doc/RRphylo.R | 2 inst/doc/RRphylo.Rmd | 2 inst/doc/RRphylo.html | 73 - inst/doc/Tree-Manipulation.R | 21 inst/doc/Tree-Manipulation.Rmd | 21 inst/doc/Tree-Manipulation.html | 74 - inst/doc/search.conv.R | 17 inst/doc/search.conv.Rmd | 17 inst/doc/search.conv.html | 24 inst/doc/search.shift.R | 7 inst/doc/search.shift.Rmd | 7 inst/doc/search.shift.html | 76 - inst/doc/search.trend.R | 104 +- inst/doc/search.trend.Rmd | 116 +- inst/doc/search.trend.html | 139 +- inst/doc/swapONE.R | 2 inst/doc/swapONE.Rmd | 2 man/RRphylo.Rd | 14 man/conv.map.Rd | 2 man/fix.poly.Rd | 2 man/getGenus.Rd | 6 man/overfitRR.Rd | 6 man/plotRates.Rd | 5 man/plotTrend.Rd |only man/rate.map.Rd | 2 man/rescaleRR.Rd | 67 + man/scaleTree.Rd | 11 man/search.conv.Rd | 5 man/search.shift.Rd | 5 man/search.trend.Rd | 103 -- man/sig2BM.Rd |only man/tips.Rd |only man/tree.merger.Rd | 9 man/treedataMatch.Rd |only vignettes/RRphylo.Rmd | 2 vignettes/Tree-Manipulation.Rmd | 21 vignettes/search.conv.Rmd | 17 vignettes/search.shift.Rmd | 7 vignettes/search.trend.Rmd | 116 +- vignettes/swapONE.Rmd | 2 73 files changed, 2096 insertions(+), 3015 deletions(-)
Title: Derivative-Free Optimization in R using C++
Description: Perform derivative-free optimization algorithms in R using C++.
A wrapper interface is provided to call C function of the 'bobyqa' implementation
(See <https://github.com/emmt/Algorithms/tree/master/bobyqa>).
Author: Sam Watson [aut],
Yi Pan [aut, cre],
Éric Thiebaut [aut],
Mike Powell [aut]
Maintainer: Yi Pan <ypan1988@gmail.com>
Diff between rminqa versions 0.1.0 dated 2022-04-28 and 0.1.1 dated 2022-05-10
DESCRIPTION | 8 +-- MD5 | 8 +-- inst/include/functor.h | 115 ++++++++++++++++++++++++++++++++++++++++++++++++- src/functor.h | 115 ++++++++++++++++++++++++++++++++++++++++++++++++- src/rbobyqa.h | 2 5 files changed, 235 insertions(+), 13 deletions(-)
Title: R Inputs/Outputs for Tractography
Description: An input-output interface for reading in and writing out common
VTK formats that store tractography data. This data comes in the form of 3D
polygons with possibly attributes at each point. These are obtained via
tracking algorithms from diffusion MRI and are a non-invasive way of
studying brain structural connectivity.
Author: Aymeric Stamm [aut, cre] ,
Jeroen Ooms [ctb],
Lee Thomason [ctb] ,
Tim Schaefer [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@math.cnrs.fr>
Diff between riot versions 0.0.1 dated 2022-05-05 and 1.0.0 dated 2022-05-10
DESCRIPTION | 19 ++-- MD5 | 24 +++-- NEWS.md | 16 +++ R/read-fascicles.R | 41 +++++---- R/read-mrtrix.R |only R/read-trk.R |only R/utils.R | 17 +++ R/wip.R |only R/write-fascicles.R | 11 +- README.md | 177 +++++++++++++++++++++++++++++++++++---- configure | 2 inst/extdata/AF_left.tck |only inst/extdata/CCMid.trk |only man/figures |only man/read_fascicles.Rd | 9 + tests/testthat/test-regularity.R | 16 +++ 16 files changed, 272 insertions(+), 60 deletions(-)
Title: Bindings for the 'Geospatial' Data Abstraction Library
Description: Provides bindings to the 'Geospatial' Data Abstraction Library ('GDAL') (>= 1.11.4) and access to projection/transformation operations from the 'PROJ' library. Please note that 'rgdal' will be retired by the end of 2023, plan transition to sf/stars/'terra' functions using 'GDAL' and 'PROJ' at your earliest convenience. Use is made of classes defined in the 'sp' package. Raster and vector map data can be imported into R, and raster and vector 'sp' objects exported. The 'GDAL' and 'PROJ' libraries are external to the package, and, when installing the package from source, must be correctly installed first; it is important that 'GDAL' < 3 be matched with 'PROJ' < 6. From 'rgdal' 1.5-8, installed with to 'GDAL' >=3, 'PROJ' >=6 and 'sp' >= 1.4, coordinate reference systems use 'WKT2_2019' strings, not 'PROJ' strings. 'Windows' and 'macOS' binaries (including 'GDAL', 'PROJ' and their dependencies) are provided on 'CRAN'.
Author: Roger Bivand [cre, aut] ,
Tim Keitt [aut],
Barry Rowlingson [aut, ctb],
Edzer Pebesma [ctb],
Michael Sumner [ctb],
Robert Hijmans [ctb],
Daniel Baston [ctb],
Even Rouault [cph, ctb],
Frank Warmerdam [cph, ctb],
Jeroen Ooms [ctb],
Colin Rundel [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between rgdal versions 1.5-31 dated 2022-04-17 and 1.5-32 dated 2022-05-10
ChangeLog | 20 ++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- NEWS.md | 8 ++++++-- build/vignette.rds |binary configure | 18 +++++++++--------- inst/ChangeLog | 20 ++++++++++++++++++++ inst/SVN_VERSION | 2 +- inst/doc/CRS_projections_transformations.html | 24 +++++++++--------------- inst/doc/OGR_shape_encoding.pdf |binary inst/doc/PROJ6_GDAL3.html | 26 +++++++++++--------------- src/Makevars.ucrt | 1 + 12 files changed, 92 insertions(+), 57 deletions(-)
Title: Gabriel Multiple Comparison Test and Plot the Confidence
Interval on Barplot
Description: Analyze multi-level one-way
experimental designs where there are unequal sample
sizes and population variance homogeneity can not be assumed.
To conduct the Gabriel test <doi:10.2307/2286265>, create two vectors: one for your
observations and one for the factor level of each observation.
The function, rgabriel, conduct the test and save the output as
a vector to input into the gabriel.plot function, which produces
a confidence interval plot for Multiple Comparison.
Author: Miao YU [aut, cre] ,
Yihui XIE [aut]
Maintainer: Miao YU <yufreecas@gmail.com>
Diff between rgabriel versions 0.7 dated 2013-12-28 and 0.9 dated 2022-05-10
DESCRIPTION | 33 ++++++++++++++-------- MD5 | 16 ++++++---- NAMESPACE | 5 ++- R/gabriel.plot.R | 43 ++++++++++++++++++++++++---- R/rgabriel-package.R |only R/rgabriel.R | 58 ++++++++++++++++++++++++++++++-------- README.md |only man/gabriel.plot.Rd | 71 ++++++++++++++++++++++------------------------- man/rgabriel-package.Rd | 69 +++++++++++++++++++++++----------------------- man/rgabriel.Rd | 72 ++++++++++++++++++++++++------------------------ 10 files changed, 222 insertions(+), 145 deletions(-)
Title: An R Interface to 'figshare'
Description: An R interface to 'figshare'.
Author: Carl Boettiger [aut, cre] ,
Scott Chamberlain [aut] ,
Karthik Ram [aut] ,
Edmund Hart [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between rfigshare versions 0.3.7 dated 2015-06-15 and 0.3.8 dated 2022-05-10
rfigshare-0.3.7/rfigshare/inst/doc/vignettes |only rfigshare-0.3.8/rfigshare/DESCRIPTION | 42 +++-- rfigshare-0.3.8/rfigshare/MD5 | 84 +++++----- rfigshare-0.3.8/rfigshare/NAMESPACE | 5 rfigshare-0.3.8/rfigshare/NEWS | 6 rfigshare-0.3.8/rfigshare/R/fs_add_categories.R | 4 rfigshare-0.3.8/rfigshare/R/fs_details.R | 19 +- rfigshare-0.3.8/rfigshare/R/fs_download.R | 5 rfigshare-0.3.8/rfigshare/R/fs_make_public.R | 4 rfigshare-0.3.8/rfigshare/R/fs_new_article.R | 6 rfigshare-0.3.8/rfigshare/R/fs_tag_as_rfigshare.R | 6 rfigshare-0.3.8/rfigshare/R/fs_upload.R | 4 rfigshare-0.3.8/rfigshare/README.md | 27 +-- rfigshare-0.3.8/rfigshare/build |only rfigshare-0.3.8/rfigshare/inst/doc/Updating-public-repositories.R |only rfigshare-0.3.8/rfigshare/inst/doc/Updating-public-repositories.Rmd |only rfigshare-0.3.8/rfigshare/inst/doc/Updating-public-repositories.html |only rfigshare-0.3.8/rfigshare/man/fs_add_author.Rd | 3 rfigshare-0.3.8/rfigshare/man/fs_add_authors.Rd | 16 + rfigshare-0.3.8/rfigshare/man/fs_add_categories.Rd | 19 +- rfigshare-0.3.8/rfigshare/man/fs_add_links.Rd | 13 - rfigshare-0.3.8/rfigshare/man/fs_add_tags.Rd | 13 - rfigshare-0.3.8/rfigshare/man/fs_auth.Rd | 23 +- rfigshare-0.3.8/rfigshare/man/fs_author_ids.Rd | 5 rfigshare-0.3.8/rfigshare/man/fs_author_search.Rd | 15 - rfigshare-0.3.8/rfigshare/man/fs_browse.Rd | 28 ++- rfigshare-0.3.8/rfigshare/man/fs_cat_to_id.Rd | 9 - rfigshare-0.3.8/rfigshare/man/fs_category_list.Rd | 5 rfigshare-0.3.8/rfigshare/man/fs_create.Rd | 14 + rfigshare-0.3.8/rfigshare/man/fs_create_author.Rd | 15 - rfigshare-0.3.8/rfigshare/man/fs_delete.Rd | 14 - rfigshare-0.3.8/rfigshare/man/fs_details.Rd | 21 +- rfigshare-0.3.8/rfigshare/man/fs_download.Rd | 24 +- rfigshare-0.3.8/rfigshare/man/fs_embed.Rd | 3 rfigshare-0.3.8/rfigshare/man/fs_ids.Rd | 11 - rfigshare-0.3.8/rfigshare/man/fs_image_url.Rd | 3 rfigshare-0.3.8/rfigshare/man/fs_make_private.Rd | 11 - rfigshare-0.3.8/rfigshare/man/fs_make_public.Rd | 14 - rfigshare-0.3.8/rfigshare/man/fs_new_article.Rd | 39 ++-- rfigshare-0.3.8/rfigshare/man/fs_search.Rd | 37 ++-- rfigshare-0.3.8/rfigshare/man/fs_update.Rd | 24 +- rfigshare-0.3.8/rfigshare/man/fs_upload.Rd | 19 +- rfigshare-0.3.8/rfigshare/man/fs_upload_one.Rd | 13 - rfigshare-0.3.8/rfigshare/man/plot_to_filename.Rd | 5 rfigshare-0.3.8/rfigshare/man/summary_fs_details.Rd | 9 - rfigshare-0.3.8/rfigshare/vignettes |only 46 files changed, 355 insertions(+), 282 deletions(-)
Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value
models. The 'rust' package <https://cran.r-project.org/package=rust> is
used to simulate a random sample from the required posterior distribution.
The functionality of 'revdbayes' is similar to the 'evdbayes' package
<https://cran.r-project.org/package=evdbayes>, which uses Markov Chain
Monte Carlo ('MCMC') methods for posterior simulation. In addition, there
are functions for making inferences about the extremal index, using
the models for threshold inter-exceedance times of Suveges and Davison
(2010) <doi:10.1214/09-AOAS292> and Holesovsky and Fusek (2020)
<doi:10.1007/s10687-020-00374-3>. Also provided are d,p,q,r functions for
the Generalised Extreme Value ('GEV') and Generalised Pareto ('GP')
distributions that deal appropriately with cases where the shape parameter
is very close to zero.
Author: Paul J. Northrop [aut, cre, cph],
Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between revdbayes versions 1.3.9 dated 2020-09-12 and 1.4.9 dated 2022-05-10
revdbayes-1.3.9/revdbayes/man/kgaps_mle.Rd |only revdbayes-1.3.9/revdbayes/man/kgaps_stats.Rd |only revdbayes-1.4.9/revdbayes/DESCRIPTION | 27 revdbayes-1.4.9/revdbayes/MD5 | 168 +- revdbayes-1.4.9/revdbayes/NAMESPACE | 4 revdbayes-1.4.9/revdbayes/NEWS.md | 30 revdbayes-1.4.9/revdbayes/R/RcppExports.R | 4 revdbayes-1.4.9/revdbayes/R/dgaps.R |only revdbayes-1.4.9/revdbayes/R/distributions.R | 8 revdbayes-1.4.9/revdbayes/R/frequentist.R | 99 + revdbayes-1.4.9/revdbayes/R/informative_priors.R | 18 revdbayes-1.4.9/revdbayes/R/init.R | 17 revdbayes-1.4.9/revdbayes/R/kgaps.R | 293 ---- revdbayes-1.4.9/revdbayes/R/plot_evpred.R | 383 ++--- revdbayes-1.4.9/revdbayes/R/predictive.R | 27 revdbayes-1.4.9/revdbayes/R/priors.R | 39 revdbayes-1.4.9/revdbayes/R/revdbayes-internal.R | 13 revdbayes-1.4.9/revdbayes/R/revdbayes.R | 40 revdbayes-1.4.9/revdbayes/R/rposterior.R | 19 revdbayes-1.4.9/revdbayes/R/rposterior_rcpp.R | 21 revdbayes-1.4.9/revdbayes/R/rprior.R | 39 revdbayes-1.4.9/revdbayes/R/sample_diagnostics.R | 28 revdbayes-1.4.9/revdbayes/README.md | 29 revdbayes-1.4.9/revdbayes/build/partial.rdb |only revdbayes-1.4.9/revdbayes/build/vignette.rds |binary revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-a-vignette.R | 15 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-a-vignette.Rmd | 52 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-a-vignette.html | 709 +++------- revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-b-using-rcpp-vignette.Rmd | 3 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-b-using-rcpp-vignette.html | 514 ++----- revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-c-predictive-vignette.R | 10 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-c-predictive-vignette.Rmd | 13 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-c-predictive-vignette.html | 396 +---- revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-d-kgaps-vignette.R | 12 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-d-kgaps-vignette.Rmd | 35 revdbayes-1.4.9/revdbayes/inst/doc/revdbayes-d-kgaps-vignette.html | 325 +--- revdbayes-1.4.9/revdbayes/inst/include/revdbayes_RcppExports.h | 21 revdbayes-1.4.9/revdbayes/man/dgaps_post.Rd |only revdbayes-1.4.9/revdbayes/man/gev.Rd | 4 revdbayes-1.4.9/revdbayes/man/gev_prob.Rd | 16 revdbayes-1.4.9/revdbayes/man/gev_quant.Rd | 2 revdbayes-1.4.9/revdbayes/man/gom.Rd | 2 revdbayes-1.4.9/revdbayes/man/gp.Rd | 4 revdbayes-1.4.9/revdbayes/man/gp_lrs.Rd | 2 revdbayes-1.4.9/revdbayes/man/gp_mdi.Rd | 2 revdbayes-1.4.9/revdbayes/man/gp_pwm.Rd | 2 revdbayes-1.4.9/revdbayes/man/grimshaw_gp_mle.Rd | 2 revdbayes-1.4.9/revdbayes/man/kgaps_post.Rd | 50 revdbayes-1.4.9/revdbayes/man/newlyn.Rd | 4 revdbayes-1.4.9/revdbayes/man/plot.evpred.Rd | 3 revdbayes-1.4.9/revdbayes/man/portpirie.Rd | 2 revdbayes-1.4.9/revdbayes/man/predict.evpost.Rd | 27 revdbayes-1.4.9/revdbayes/man/print.evpost.Rd |only revdbayes-1.4.9/revdbayes/man/rDir.Rd | 2 revdbayes-1.4.9/revdbayes/man/revdbayes-internal.Rd | 3 revdbayes-1.4.9/revdbayes/man/revdbayes.Rd | 29 revdbayes-1.4.9/revdbayes/man/rpost.Rd | 18 revdbayes-1.4.9/revdbayes/man/rpost_rcpp.Rd | 18 revdbayes-1.4.9/revdbayes/man/rprior_prob.Rd | 32 revdbayes-1.4.9/revdbayes/man/rprior_quant.Rd | 9 revdbayes-1.4.9/revdbayes/man/set_prior.Rd | 35 revdbayes-1.4.9/revdbayes/man/venice.Rd | 4 revdbayes-1.4.9/revdbayes/src/RcppExports.cpp | 42 revdbayes-1.4.9/revdbayes/src/init.c | 4 revdbayes-1.4.9/revdbayes/src/posteriors_and_priors.cpp | 28 revdbayes-1.4.9/revdbayes/tests/testthat/test-bingp.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-gev.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-gev2.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-gp.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-gp2.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-inf_priors.R | 154 +- revdbayes-1.4.9/revdbayes/tests/testthat/test-predict_evpost.R | 12 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_bingp.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_bingp_weights.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_dgaps.R |only revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_gev.R | 170 +- revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_gp.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_gp_weights.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_kgaps.R | 2 revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_os.R | 242 +-- revdbayes-1.4.9/revdbayes/tests/testthat/test-rpost_pp.R | 152 +- revdbayes-1.4.9/revdbayes/tests/testthat/test-upper.R | 2 revdbayes-1.4.9/revdbayes/vignettes/ex1revdbayes.nb.html |only revdbayes-1.4.9/revdbayes/vignettes/ex2revdbayes.nb.html |only revdbayes-1.4.9/revdbayes/vignettes/revdbayes-a-vignette.Rmd | 52 revdbayes-1.4.9/revdbayes/vignettes/revdbayes-b-using-rcpp-vignette.Rmd | 3 revdbayes-1.4.9/revdbayes/vignettes/revdbayes-c-predictive-vignette.Rmd | 13 revdbayes-1.4.9/revdbayes/vignettes/revdbayes-d-kgaps-vignette.Rmd | 35 revdbayes-1.4.9/revdbayes/vignettes/revdbayes.bib | 28 revdbayes-1.4.9/revdbayes/vignettes/taylor-and-francis-chicago-author-date.csl |only 90 files changed, 2010 insertions(+), 2630 deletions(-)
Title: Regression Model Processing Port
Description: Provides R6 classes, methods and utilities to construct,
analyze, summarize, and visualize regression models.
Author: Shixiang Wang [aut, cre]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between regport versions 0.2.0 dated 2022-04-06 and 0.3.0 dated 2022-05-10
DESCRIPTION | 8 MD5 | 24 NAMESPACE | 5 NEWS.md | 24 R/REGModel.R | 47 + R/REGModelList.R | 103 ++- R/regport-package.R | 5 R/utils.R | 58 - README.md | 391 +++++------- man/REGModel.Rd | 460 +++++++-------- man/REGModelList.Rd | 353 ++++++----- tests/testthat/test-roxytest-testexamples-REGModel.R | 149 ++-- tests/testthat/test-roxytest-testexamples-REGModelList.R | 46 - 13 files changed, 920 insertions(+), 753 deletions(-)
Title: Automatic Time Series Forecasting and Missing Value Imputation
Description: Machine learning algorithm for predicting and imputing time series. It can automatically set all the parameters needed, thus in the minimal configuration it only requires the target variable and the dependent variables if present. It can address large problems with hundreds or thousands of dependent variables and problems in which the number of dependent variables is greater than the number of observations. Moreover it can be used not only for time series but also for any other real valued target variable. The algorithm implemented includes a Bayesian stochastic search methodology for model selection and a robust estimation based on bootstrapping. 'rego' is fast because all the code is C++.
Author: Davide Altomare [cre, aut],
David Loris [aut]
Maintainer: Davide Altomare <info@channelattribution.io>
Diff between rego versions 1.3.5 dated 2022-03-16 and 1.4.1 dated 2022-05-10
DESCRIPTION | 8 MD5 | 12 R/rego.R | 82 +++- man/rego-package.Rd | 4 man/regpred.Rd | 22 - src/rego.cpp | 957 ++++++++++++++++++++++++++++++---------------------- src/rego.h | 45 +- 7 files changed, 666 insertions(+), 464 deletions(-)
Title: Decision Analytic Modelling in Health Economics
Description: Classes and functions for modelling health care interventions
using decision trees and semi-Markov models. Mechanisms are provided for
associating an uncertainty distribution with each source variable and for
ensuring transparency of the mathematical relationships between variables.
The package terminology follows Briggs "Decision Modelling for Health
Economic Evaluation" (2006, ISBN:978-0-19-852662-9).
Author: Andrew Sims [aut, cre] ,
Kim Fairbairn [aut] ,
Paola Cognigni [aut]
Maintainer: Andrew Sims <andrew.sims@newcastle.ac.uk>
Diff between rdecision versions 1.1.0 dated 2021-09-08 and 1.1.1 dated 2022-05-10
DESCRIPTION | 17 + MD5 | 88 ++++---- NAMESPACE | 1 R/DecisionNode.R | 2 R/DecisionTree.R | 144 ++++++-------- R/EmpiricalDistribution.R |only R/ExprModVar.R | 284 +++++++++++++++------------- R/LeafNode.R | 2 R/MarkovState.R | 11 - R/ModVar.R | 78 +++---- R/SemiMarkovModel.R | 105 +++++----- README.md | 150 +++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 31 ++- inst/WORDLIST | 22 ++ inst/doc/DT00-DecisionTreeTutorial.R |only inst/doc/DT00-DecisionTreeTutorial.Rmd |only inst/doc/DT00-DecisionTreeTutorial.html |only inst/doc/DT01-Sumatriptan.Rmd | 2 inst/doc/DT01-Sumatriptan.html | 9 inst/doc/DT02-Tegaderm.Rmd | 2 inst/doc/DT02-Tegaderm.html | 73 +++---- inst/doc/DT03-ShaleGas.Rmd | 2 inst/doc/DT03-ShaleGas.html | 7 inst/doc/GT01-NewScientistPuzzle.Rmd | 2 inst/doc/GT01-NewScientistPuzzle.html | 7 inst/doc/SM01-HIV.Rmd | 4 inst/doc/SM01-HIV.html | 17 - inst/nature-no-et-al.csl |only man/DecisionNode.Rd | 2 man/DecisionTree.Rd | 95 +++++---- man/EmpiricalDistribution.Rd |only man/ExprModVar.Rd | 148 +++++++++----- man/MarkovState.Rd | 9 man/ModVar.Rd | 38 ++- man/SemiMarkovModel.Rd | 26 +- man/figures/README-treedraw-1.png |binary tests/testthat/test-DecisionNode.R | 10 tests/testthat/test-DecisionTree.R | 18 + tests/testthat/test-EmpiricalDistribution.R |only tests/testthat/test-ExprModVar.R | 134 ++++++++++--- tests/testthat/test-SemiMarkovModel.R | 49 ++++ vignettes/DT00-DecisionTreeTutorial.Rmd |only vignettes/DT01-Sumatriptan.Rmd | 2 vignettes/DT02-Tegaderm.Rmd | 2 vignettes/DT03-ShaleGas.Rmd | 2 vignettes/GT01-NewScientistPuzzle.Rmd | 2 vignettes/SM01-HIV.Rmd | 4 49 files changed, 949 insertions(+), 652 deletions(-)
Title: Download and Parse Public Data Released by B3 Exchange
Description: Download and parse public files released by B3 and convert them
into useful formats and data structures common to data analysis
practitioners.
Author: Wilson Freitas [aut, cre],
Marcelo Perlin [aut]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between rb3 versions 0.0.1 dated 2022-05-05 and 0.0.2 dated 2022-05-10
DESCRIPTION | 8 - MD5 | 62 +++++----- NAMESPACE | 3 NEWS.md |only R/convert_to.R | 5 R/downloaders.R | 17 ++ R/fields.R | 16 +- R/file.R | 24 +++- R/rb3-package.R | 1 R/readers.R | 18 +++ R/scraper-futures.R | 43 +++++-- R/scraper-yc.R | 48 +++++--- R/transmute.R | 6 - R/zzz.R | 4 README.md | 147 ++++++++++++------------- inst/doc/Fetching-historical-future-rates.R | 2 inst/doc/Fetching-historical-future-rates.Rmd | 4 inst/doc/Fetching-historical-future-rates.html | 8 - inst/doc/Fetching-historical-yield-curve.R | 14 +- inst/doc/Fetching-historical-yield-curve.Rmd | 14 +- inst/doc/Fetching-historical-yield-curve.html | 42 +++---- inst/extdata/templates/AjustesDiarios.yaml | 12 -- inst/extdata/templates/GetStockIndex.yaml |only man/convert_to.Rd | 74 ++++++------ man/figures/README-setup-1.png |binary man/futures_get.Rd | 22 ++- man/yc_get.Rd | 24 +++- tests/testthat/test-convert_to.R | 4 tests/testthat/test-file.R | 27 ++++ tests/testthat/test-futures.R | 29 ++++ tests/testthat/test-yc.R | 28 ++++ vignettes/Fetching-historical-future-rates.Rmd | 4 vignettes/Fetching-historical-yield-curve.Rmd | 14 +- 33 files changed, 458 insertions(+), 266 deletions(-)
Title: A Modification of Fleiss' Kappa in Case of Nominal and Ordinal
Variables
Description: The kappa statistic implemented by Fleiss is a very popular index for assessing the reliability of agreement among multiple observers. It is used both in the psychological and in the psychiatric field. Other fields of application are typically medicine, biology and engineering. Unfortunately,the kappa statistic may behave inconsistently in case of strong agreement between raters, since this index assumes lower values than it would have been expected. We propose a modification kappa implemented by Fleiss in case of nominal and ordinal variables. Monte Carlo simulations are used both to testing statistical hypotheses and to calculating percentile bootstrap confidence intervals based on proposed statistic in case of nominal and ordinal data.
Author: Daniele Giardiello [cre],
Piero Quatto [aut],
Enrico Ripamonti [aut],
Stefano Vigliani [ctb]
Maintainer: Daniele Giardiello <daniele.giardiello1@gmail.com>
Diff between raters versions 2.0.1 dated 2014-12-29 and 2.0.2 dated 2022-05-10
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NAMESPACE | 1 + 3 files changed, 7 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-09 0.1.0.1
2017-10-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-10 1.2
2014-04-22 1.1
2014-01-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-01 1.0.2
2010-08-16 1.0.1
2010-07-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-10 1.0.3
2014-07-02 1.0.2
2014-04-18 1.0.1
2014-03-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-04-07 0.8-12
2011-04-01 0.8-11
2011-03-27 0.8-10
2011-01-23 0.8-9
2010-08-24 0.8-7
2010-03-07 0.8-6
2009-11-19 0.8-5
2009-08-30 0.8-4
2009-08-01 0.8-1
2008-11-02 0.7-2
2008-10-20 0.7-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-09-18 1.0-3
2013-10-11 1.0-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-11 1.2.1
2013-04-30 1.1
2012-12-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-28 1.2
2013-01-20 1.1
2012-07-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-30 0.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-21 3.0
2012-11-21 2.2
2012-03-10 2.1
2012-02-04 2.0
2012-01-28 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-10 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-03-13 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-08-22 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-02-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-11 1.1
2009-08-19 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-28 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-10-13 1.0.0
Title: Exact Rate Ratio Test
Description: Performs exact rate ratio tests.
Author: Michael Fay <mfay@niaid.nih.gov>
Maintainer: Michael Fay <mfay@niaid.nih.gov>
Diff between rateratio.test versions 1.0-2 dated 2014-01-22 and 1.1 dated 2022-05-10
Changelog | 4 ++++ DESCRIPTION | 14 +++++++------- MD5 | 12 ++++++------ NAMESPACE | 4 +++- build/vignette.rds |binary inst/doc/rateratio.test.pdf |binary man/rateratio.Rd | 2 +- 7 files changed, 21 insertions(+), 15 deletions(-)
More information about rateratio.test at CRAN
Permanent link
Title: Random Effects Latent Class Analysis
Description: Fits standard and random effects latent class models. The single level random effects model is described in Qu et al <doi:10.2307/2533043> and the two level random effects model in Beath and Heller <doi:10.1177/1471082X0800900302>. Examples are given for their use in diagnostic testing.
Author: Ken Beath [aut, cre]
Maintainer: Ken Beath <ken@kjbeath.com.au>
Diff between randomLCA versions 1.1-1 dated 2021-02-15 and 1.1-2 dated 2022-05-10
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 30 +++++++++++++++--------------- inst/NEWS | 4 ++++ 6 files changed, 31 insertions(+), 27 deletions(-)
Title: Tools to Accompany the 'psych' Package for Psychological
Research
Description: Support functions, data sets, and vignettes for the 'psych' package. Contains several of the biggest data sets for the 'psych' package as well as one vignette. A few helper functions for file manipulation are included as well. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psychTools versions 2.2.3 dated 2022-03-18 and 2.2.5 dated 2022-05-10
DESCRIPTION | 8 ++++---- MD5 | 22 ++++++++++++---------- data/Athenstaedt.rda |only data/GERAS.rda |binary inst/CITATION | 8 ++++---- inst/NEWS.Rd | 24 +++++++++++++++++++++--- inst/doc/factor.pdf |binary inst/doc/mediation.pdf |binary inst/doc/omega.pdf |binary inst/doc/overview.pdf |binary man/Athenstaedt.Rd |only man/GERAS.Rd | 2 +- man/holzinger.swineford.Rd | 7 ++++++- 13 files changed, 48 insertions(+), 23 deletions(-)
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Functions for simulating and testing particular item and test structures are included. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, factor analysis and structural equation models are created using basic graphics. Some of the functions are written to support a book on psychometric theory as well as publications in personality research. For more information, see the <https://personality-project.org/r/> web page.
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 2.2.3 dated 2022-03-18 and 2.2.5 dated 2022-05-10
DESCRIPTION | 8 +++---- MD5 | 48 +++++++++++++++++++++++----------------------- NAMESPACE | 2 + R/densityBy.r | 5 +++- R/error.dots.r | 3 +- R/pairs.panels.R | 6 ++--- R/reliability.R | 2 - R/sim.structural.R | 6 ++++- R/splitHalf.R | 4 ++- R/validity.R | 12 ++++++----- inst/CITATION | 4 +-- inst/News.Rd | 29 +++++++++++++++++++++++---- inst/doc/intro.pdf |binary inst/doc/scoring.R | 4 +-- inst/doc/scoring.Rnw | 26 ++++++++++++------------ inst/doc/scoring.pdf |binary man/00.psych-package.Rd | 4 +-- man/Garcia.Rd | 26 ++++++++++++++++-------- man/cohen.d.Rd | 4 +++ man/densityBy.Rd | 4 +-- man/error.bars.by.Rd | 2 - man/predicted.validity.Rd | 3 ++ man/scatter.hist.Rd | 2 - man/sim.Rd | 47 ++++++++++++++++++++++++++++++++++----------- vignettes/scoring.Rnw | 26 ++++++++++++------------ 25 files changed, 176 insertions(+), 101 deletions(-)
More information about PopulationGrowthR at CRAN
Permanent link
Title: Confidence Intervals with Poisson Double Sampling
Description: Functions to create confidence intervals for ratios of Poisson
rates under misclassification using double sampling. Implementations of the
methods described in Kahle, D., P. Young, B. Greer, and D. Young (2016).
"Confidence Intervals for the Ratio of Two Poisson Rates Under One-Way
Differential Misclassification Using Double Sampling." Computational
Statistics & Data Analysis, 95:122–132.
Author: David Kahle [aut, cre] ,
Phil Young [aut],
Dean Young [aut]
Maintainer: David Kahle <david@kahle.io>
Diff between poisDoubleSamp versions 1.1 dated 2015-02-03 and 1.1.1 dated 2022-05-10
DESCRIPTION | 32 +++++++++----- LICENSE |only MD5 | 42 +++++++++---------- NAMESPACE | 8 +++ R/RcppExports.R | 6 +- R/approxMargMLE.r | 33 +++++++++----- R/approxMargMLECI.r | 33 +++++++++----- R/fullMLE.r | 37 +++++++++------- R/help.r | 8 +++ R/margMLE.r | 31 ++++++++------ R/margMLECI.r | 36 +++++++++------- R/profMLECI.r | 35 +++++++++------ R/waldCI.r | 2 inst |only man/approxMargMLE.Rd | 34 +++++++++++---- man/approxMargMLECI.Rd | 32 +++++++++++--- man/fullMLE.Rd | 21 ++++++--- man/margMLE.Rd | 22 ++++++--- man/margMLECI.Rd | 22 +++++++-- man/poisDoubleSamp.Rd | 13 +++-- man/profMLECI.Rd | 32 +++++++++++--- man/waldCI.Rd | 14 +++--- src/RcppExports.cpp | 108 ++++++++++++++++++++++++++----------------------- 23 files changed, 379 insertions(+), 222 deletions(-)
More information about poisDoubleSamp at CRAN
Permanent link
Title: Methods for Partial Linear Single Index Model
Description: Estimation, hypothesis tests, and variable selection in partially linear single-index models. Please see H. (2010) at <doi:10.1214/10-AOS835> for more details.
Author: Shunyao Wu, Qi Zhang, Zhiruo Li, Hua Liang
Maintainer: Shunyao Wu <wushunyao@qdu.edu.cn>
Diff between PLSiMCpp versions 1.0.1 dated 2021-12-21 and 1.0.2 dated 2022-05-10
PLSiMCpp-1.0.1/PLSiMCpp/R/plsim.pre.r |only PLSiMCpp-1.0.1/PLSiMCpp/R/summary.r |only PLSiMCpp-1.0.1/PLSiMCpp/man/plsim.pre.Rd |only PLSiMCpp-1.0.2/PLSiMCpp/DESCRIPTION | 10 PLSiMCpp-1.0.2/PLSiMCpp/MD5 | 40 +-- PLSiMCpp-1.0.2/PLSiMCpp/NAMESPACE | 22 +- PLSiMCpp-1.0.2/PLSiMCpp/R/auxiliaryFunction.r | 64 +----- PLSiMCpp-1.0.2/PLSiMCpp/R/methods.r |only PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.MAVE.r | 275 ++++---------------------- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.bw.r | 97 +++------ PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.est.r | 94 ++++---- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.ini.r | 163 +++------------ PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.lam.r | 91 +++----- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.npTest.r | 27 +- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.pTest.r | 141 +++++-------- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.vs.hard.r | 167 ++++----------- PLSiMCpp-1.0.2/PLSiMCpp/R/plsim.vs.soft.r | 81 +++---- PLSiMCpp-1.0.2/PLSiMCpp/R/predict.r |only PLSiMCpp-1.0.2/PLSiMCpp/man/plsim.est.Rd | 2 PLSiMCpp-1.0.2/PLSiMCpp/man/plsim.npTest.Rd | 12 - PLSiMCpp-1.0.2/PLSiMCpp/man/plsim.pTest.Rd | 19 - PLSiMCpp-1.0.2/PLSiMCpp/man/plsim.vs.hard.Rd | 1 PLSiMCpp-1.0.2/PLSiMCpp/man/predict.pls.Rd |only PLSiMCpp-1.0.2/PLSiMCpp/src/RcppExports.cpp | 5 24 files changed, 436 insertions(+), 875 deletions(-)
Title: Prediction Limits for Poisson Distribution
Description: Prediction limits for the Poisson distribution
are produced from both frequentist and Bayesian viewpoints. Limiting results
are provided in a Bayesian setting with uniform, Jeffreys and gamma as prior
distributions. More details on the methodology are discussed in Bejleri and
Nandram (2018) <doi:10.1080/03610926.2017.1373814> and Bejleri, Sartore and
Nandram (2021) <doi:10.1007/s42952-021-00157-x>.
Author: Valbona Bejleri [aut] ,
Luca Sartore [aut, cre] ,
Balgobin Nandram [aut]
Maintainer: Luca Sartore <drwolf85@gmail.com>
Diff between plpoisson versions 0.2.0 dated 2021-02-14 and 0.3.0 dated 2022-05-10
DESCRIPTION | 11 ++++++----- MD5 | 19 +++++++++++-------- NAMESPACE | 3 ++- NEWS | 23 +++++++++++++++++++++++ R/hyperbootstrap.R |only README.md | 3 ++- build/partial.rdb |binary inst/INSTALL.md | 4 ++-- man/hyperbootstrap.Rd |only man/plpoisson-package.Rd | 8 +++++--- src/plpbootstrap.c |only src/plpoisson.c | 25 ++++++++++++------------- 12 files changed, 63 insertions(+), 33 deletions(-)
Title: Spider Plots, ROC Curves, Pie Charts and More for Use in Other
Plots
Description: Small self-contained plots for use in larger plots or to
delegate plotting in other functions. Also contains a number of
alternative color palettes and HSL color space based tools to modify
colors or palettes.
Author: January Weiner
Maintainer: January Weiner <january.weiner@gmail.com>
Diff between plotwidgets versions 0.4 dated 2016-09-06 and 0.5.1 dated 2022-05-10
DESCRIPTION | 9 ++++----- MD5 | 8 ++++---- R/palettes.R | 6 +++++- R/plotwidgets.R | 2 +- man/plotPals.Rd | 6 +++++- 5 files changed, 19 insertions(+), 12 deletions(-)
Title: Tabulate P.L. 94-171 Redistricting Data Summary Files
Description: Tools to process legacy format summary redistricting data files
produced by the United States Census Bureau pursuant to P.L. 94-171. These
files are generally available earlier but are difficult to work with as-is.
Author: Cory McCartan [aut, cre],
Christopher T. Kenny [aut]
Maintainer: Cory McCartan <cmccartan@g.harvard.edu>
Diff between PL94171 versions 1.0.1 dated 2021-11-18 and 1.0.2 dated 2022-05-10
DESCRIPTION | 6 MD5 | 30 ++-- NAMESPACE | 1 NEWS.md | 3 R/PL94171-package.R | 2 R/pl_crosswalk.R | 67 +++++++-- R/pl_get_baf.R | 6 R/pl_get_prototype.R | 6 R/pl_get_vtd.R | 6 R/pl_read.R | 12 + R/utils.R | 8 + build/vignette.rds |binary inst/doc/PL94171.html | 278 +++++++++++++++++++++++++++++++++++++--- man/PL94171-package.Rd | 4 tests/testthat/test-crosswalk.R | 4 tests/testthat/test-urls.R | 1 16 files changed, 371 insertions(+), 63 deletions(-)
Title: Design of the Best Phage Cocktail
Description: There are 4 possible methods: "ExhaustiveSearch"; "ExhaustivePhi";
"ClusteringSearch"; and "ClusteringPhi".
"ExhaustiveSearch"--> gives you the best phage cocktail from a phage-bacteria
infection network. It checks different phage cocktail sizes from 1 to 7 and
only stops before if it lyses all bacteria. Other option is when users have
decided not to obtain a phage cocktail size higher than a limit value.
"ExhaustivePhi"--> firstly, it finds Phi out. Phi is a formula
indicating the necessary phage cocktail size. Phi needs nestedness temperature
and fill, which are internally calculated. This function will only look for the
best combination (phage cocktail) with a Phi size.
"ClusteringSearch"--> firstly, an agglomerative hierarchical clustering using
Ward's algorithm is calculated for phages. They will be clustered according to
bacteria lysed by them. PhageCocktail() chooses how many clusters are needed in
order to select 1 phage per cluster. Using the phages selected during the
clustering, it checks different phage cocktail sizes from 1 to 7 and only stops
before if it lyses all bacteria. Other option is when users have decided not to
obtain a phage cocktail size higher than a limit value.
"ClusteringPhi"--> firstly, an agglomerative hierarchical clustering using Ward's
algorithm is calculated for phages. They will be clustered according to bacteria
lysed by them. PhageCocktail() chooses how many clusters are needed in order to
select 1 phage per cluster. Once the function has one phage per cluster, it
calculates Phi. If the number of clusters is less than Phi number, it will be
changed to obtain, as minimum, this quantity of candidates (phages). Then, it
calculates the best combination of Phi phages using those selected during the
clustering with Ward algorithm.
If you use PhageCocktail, please cite it as:
"PhageCocktail: An R Package to Design Phage Cocktails from Experimental
Phage-Bacteria Infection Networks". María Victoria Díaz-Galián, Miguel A.
Vega-Rodríguez, Felipe Molina. Computer Methods and Programs in Biomedicine,
106865, Elsevier Ireland, Clare, Ireland, 2022, ISSN: 0169-2607.
Author: Maria Victoria Diaz-Galian [aut, cre]
,
Miguel A. Vega-Rodriguez [aut]
,
Felipe Molina [aut]
Maintainer: Maria Victoria Diaz-Galian <mvdiazgalian@unex.es>
Diff between PhageCocktail versions 1.0.1 dated 2022-05-02 and 1.0.2 dated 2022-05-10
DESCRIPTION | 11 ++++++++--- MD5 | 6 +++--- build/partial.rdb |binary man/PhageCocktail.Rd | 18 ++++++++++++++++++ 4 files changed, 29 insertions(+), 6 deletions(-)
Title: Approximate Bayesian Computations for Phylogenetic Comparative
Methods
Description: Fits by ABC, the parameters of a stochastic process modelling the phylogeny and evolution of a suite of traits following the tree. The user may define an arbitrary Markov process for the trait and phylogeny. Importantly, trait-dependent speciation models are handled and fitted to data. See K. Bartoszek, P. Lio' (2019) <doi:10.5506/APhysPolBSupp.12.25>. The suggested geiger package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/geiger/>, suggested to take latest version. Otherwise its required code is present in the pcmabc package. The suggested distory package can be obtained from CRAN's archive <https://cran.r-project.org/src/contrib/Archive/distory/>, suggested to take latest version.
Author: Krzysztof Bartoszek <krzbar@protonmail.ch>, Pietro Lio'
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between pcmabc versions 1.1.2 dated 2022-05-04 and 1.1.3 dated 2022-05-10
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/from_geiger_2_0_6_2_diversification.R | 3 ++- man/pcmabc-package.Rd | 4 ++-- 4 files changed, 12 insertions(+), 11 deletions(-)
Title: Expanded Replacement and Extension of the 'optim' Function
Description: Provides a replacement and extension of the optim()
function to call to several function minimization codes in R in a single
statement. These methods handle smooth, possibly box constrained functions
of several or many parameters. Note that function 'optimr()' was prepared to
simplify the incorporation of minimization codes going forward. Also implements some
utility codes and some extra solvers, including safeguarded Newton methods.
Many methods previously separate are now included here.
This is the version for CRAN.
Author: John C Nash [aut, cre],
Ravi Varadhan [aut],
Gabor Grothendieck [ctb]
Maintainer: John C Nash <nashjc@uottawa.ca>
Diff between optimx versions 2021-10.12 dated 2021-10-13 and 2022-4.30 dated 2022-05-10
DESCRIPTION | 9 ++++---- MD5 | 16 +++++++------- build/vignette.rds |binary inst/doc/Extend-optimx.pdf |binary inst/doc/Rvmmin.html | 2 - inst/doc/SNewton.html | 2 - man/Rcgmin.Rd | 50 +++++---------------------------------------- man/Rcgminb.Rd | 6 ++--- man/Rcgminu.Rd | 8 +++---- 9 files changed, 28 insertions(+), 65 deletions(-)
Title: Client Interface for 'openEO' Servers
Description: Access data and processing functionalities of 'openEO' compliant back-ends in R.
Author: Florian Lahn [aut, cre],
Peter James Zellner [ctb],
Matthias Mohr [ctb]
Maintainer: Florian Lahn <florian.lahn@eftas.com>
Diff between openeo versions 1.1.0 dated 2021-11-08 and 1.2.0 dated 2022-05-10
openeo-1.1.0/openeo/inst/extdata/collection_viewer_template.html |only openeo-1.1.0/openeo/inst/extdata/process_viewer_template.html |only openeo-1.1.0/openeo/man/graphToJSON.Rd |only openeo-1.2.0/openeo/DESCRIPTION | 30 openeo-1.2.0/openeo/MD5 | 165 openeo-1.2.0/openeo/NAMESPACE | 509 openeo-1.2.0/openeo/NEWS.md | 485 openeo-1.2.0/openeo/R/argument_types.R | 5757 +++++----- openeo-1.2.0/openeo/R/authentication.R | 1041 + openeo-1.2.0/openeo/R/client.R | 1743 +-- openeo-1.2.0/openeo/R/coerce-functions.R | 554 openeo-1.2.0/openeo/R/debugging.R | 296 openeo-1.2.0/openeo/R/jobs.R | 1165 +- openeo-1.2.0/openeo/R/ops.R | 20 openeo-1.2.0/openeo/R/predefined_processes.R | 1 openeo-1.2.0/openeo/R/print-functions.R | 1139 + openeo-1.2.0/openeo/R/process_graph_building.R | 2020 +-- openeo-1.2.0/openeo/R/sample_data.R |only openeo-1.2.0/openeo/R/server_metadata.R | 520 openeo-1.2.0/openeo/R/services.R | 6 openeo-1.2.0/openeo/R/udf.R | 26 openeo-1.2.0/openeo/R/user.R | 769 - openeo-1.2.0/openeo/R/user_defined_processes.R | 799 - openeo-1.2.0/openeo/R/utilities.R | 345 openeo-1.2.0/openeo/R/viewer.R | 450 openeo-1.2.0/openeo/R/zzz.R | 26 openeo-1.2.0/openeo/README.md | 2 openeo-1.2.0/openeo/build/vignette.rds |binary openeo-1.2.0/openeo/inst/doc/getting_started.R | 2 openeo-1.2.0/openeo/inst/doc/getting_started.Rmd | 858 - openeo-1.2.0/openeo/inst/doc/getting_started.html | 4 openeo-1.2.0/openeo/inst/doc/sample_data.R |only openeo-1.2.0/openeo/inst/doc/sample_data.Rmd |only openeo-1.2.0/openeo/inst/doc/sample_data.html |only openeo-1.2.0/openeo/inst/extdata/process_docgen.html |only openeo-1.2.0/openeo/inst/extdata/viewer.html |only openeo-1.2.0/openeo/inst/extdata/web_component.html |only openeo-1.2.0/openeo/man/AnyOf.Rd | 2 openeo-1.2.0/openeo/man/Array.Rd | 2 openeo-1.2.0/openeo/man/Boolean.Rd | 2 openeo-1.2.0/openeo/man/BoundingBox.Rd | 2 openeo-1.2.0/openeo/man/CollectionId.Rd | 2 openeo-1.2.0/openeo/man/Date.Rd | 2 openeo-1.2.0/openeo/man/DateTime.Rd | 2 openeo-1.2.0/openeo/man/EPSGCode.Rd | 4 openeo-1.2.0/openeo/man/GeoJson.Rd | 48 openeo-1.2.0/openeo/man/IAuth.Rd | 2 openeo-1.2.0/openeo/man/Integer.Rd | 2 openeo-1.2.0/openeo/man/JobId.Rd | 2 openeo-1.2.0/openeo/man/Kernel.Rd | 2 openeo-1.2.0/openeo/man/MetadataFilter.Rd |only openeo-1.2.0/openeo/man/Number.Rd | 2 openeo-1.2.0/openeo/man/OIDCAuth.Rd | 142 openeo-1.2.0/openeo/man/OpenEOClient.Rd | 5 openeo-1.2.0/openeo/man/OutputFormat.Rd | 2 openeo-1.2.0/openeo/man/OutputFormatOptions.Rd | 2 openeo-1.2.0/openeo/man/ProcessGraphArgument.Rd | 2 openeo-1.2.0/openeo/man/ProcessGraphId.Rd | 2 openeo-1.2.0/openeo/man/ProcessGraphParameter.Rd | 2 openeo-1.2.0/openeo/man/ProjDefinition.Rd | 2 openeo-1.2.0/openeo/man/RasterCube.Rd | 2 openeo-1.2.0/openeo/man/String.Rd | 2 openeo-1.2.0/openeo/man/TemporalInterval.Rd | 2 openeo-1.2.0/openeo/man/TemporalIntervals.Rd | 2 openeo-1.2.0/openeo/man/Time.Rd | 2 openeo-1.2.0/openeo/man/UdfCodeArgument.Rd | 2 openeo-1.2.0/openeo/man/UdfRuntimeArgument.Rd | 2 openeo-1.2.0/openeo/man/UdfRuntimeVersionArgument.Rd | 2 openeo-1.2.0/openeo/man/VectorCube.Rd | 2 openeo-1.2.0/openeo/man/as.Graph.Rd | 63 openeo-1.2.0/openeo/man/as.Process.Rd | 60 openeo-1.2.0/openeo/man/collection_viewer.Rd | 9 openeo-1.2.0/openeo/man/compute_result.Rd | 90 openeo-1.2.0/openeo/man/connect.Rd | 37 openeo-1.2.0/openeo/man/download_results.Rd | 47 openeo-1.2.0/openeo/man/get_sample.Rd |only openeo-1.2.0/openeo/man/login.Rd | 137 openeo-1.2.0/openeo/man/logs.Rd | 16 openeo-1.2.0/openeo/man/openeo-deprecated.Rd |only openeo-1.2.0/openeo/man/privacy_policy.Rd | 38 openeo-1.2.0/openeo/man/process_viewer.Rd | 9 openeo-1.2.0/openeo/man/start_job.Rd | 44 openeo-1.2.0/openeo/man/status.Rd | 56 openeo-1.2.0/openeo/man/terms_of_service.Rd | 38 openeo-1.2.0/openeo/man/toJSON-deprecated.Rd |only openeo-1.2.0/openeo/man/toJSON.Rd |only openeo-1.2.0/openeo/tests/testthat/test-argument-boolean.R |only openeo-1.2.0/openeo/tests/testthat/test-argument-bounding-box.R |only openeo-1.2.0/openeo/tests/testthat/test-argument-epsgcode.R |only openeo-1.2.0/openeo/tests/testthat/test-client.R |only openeo-1.2.0/openeo/tests/testthat/test-gee-test.R |only openeo-1.2.0/openeo/tests/testthat/test-geojson-as-list.R |only openeo-1.2.0/openeo/tests/testthat/test-metadata-filter.R |only openeo-1.2.0/openeo/vignettes/getting_started.Rmd | 858 - openeo-1.2.0/openeo/vignettes/sample_data.Rmd |only 95 files changed, 10961 insertions(+), 9526 deletions(-)
More information about onlineforecast at CRAN
Permanent link
Title: Bayesian Analyses of Radiocarbon Dates with NIMBLE
Description: Provides utility functions and custom probability distribution for Bayesian analyses of radiocarbon dates within the 'nimble' modelling framework. It includes various population growth models, nimbleFunction objects, as well as a suite of functions for prior and posterior predictive checks for demographic inference (Crema and Shoda (2021) <doi:10.1371/journal.pone.0251695>) and other analyses.
Author: Enrico Crema [aut, cre] ,
Robert Di Napoli [ctb]
Maintainer: Enrico Crema <enrico.crema@gmail.com>
Diff between nimbleCarbon versions 0.1.2 dated 2021-05-27 and 0.2.1 dated 2022-05-10
DESCRIPTION | 10 MD5 | 26 - NAMESPACE | 8 NEWS.md | 10 R/compare.models.R | 4 R/dAsymLaplace.R |only R/dTrapezoidal.R |only R/modelPlot.R | 38 +- R/register.R | 16 README.md | 4 build/vignette.rds |binary inst/CITATION | 4 inst/doc/nimble_carbon_vignette.html | 607 +++++++++++++++++------------------ man/dAsymLaplace.Rd |only man/dTrapezoidal.Rd |only man/modelPlot.Rd | 3 16 files changed, 392 insertions(+), 338 deletions(-)
Title: Cross-Validated (Nested) Forward Selection
Description: Implementation of forward selection based on cross-validated
linear and logistic regression.
Author: Marco Colombo [aut, cre] ,
Felix Agakov [ctb]
Maintainer: Marco Colombo <mar.colombo13@gmail.com>
Diff between nestfs versions 1.0.1 dated 2022-02-21 and 1.0.2 dated 2022-05-10
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 5 +++++ build/partial.rdb |binary tests/testthat/test_forward_selection.R | 2 ++ 5 files changed, 16 insertions(+), 9 deletions(-)
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is
a socket library providing high-performance scalability protocols,
implementing a cross-platform standard for messaging and communications.
Serves as a concurrency framework for building distributed applications,
utilising 'Aio' objects which automatically resolve upon completion of
asynchronous operations.
Author: Charlie Gao [aut, cre] ,
Ling Li [ctb]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between nanonext versions 0.4.0 dated 2022-04-10 and 0.5.0 dated 2022-05-10
nanonext-0.4.0/nanonext/man/logging.Rd |only nanonext-0.4.0/nanonext/man/recv_ctx.Rd |only nanonext-0.4.0/nanonext/man/send_ctx.Rd |only nanonext-0.5.0/nanonext/DESCRIPTION | 6 nanonext-0.5.0/nanonext/MD5 | 95 +-- nanonext-0.5.0/nanonext/NAMESPACE | 12 nanonext-0.5.0/nanonext/NEWS.md | 22 nanonext-0.5.0/nanonext/R/aio.R | 161 ++---- nanonext-0.5.0/nanonext/R/context.R | 171 +------ nanonext-0.5.0/nanonext/R/docs.R | 52 +- nanonext-0.5.0/nanonext/R/listdial.R | 26 - nanonext-0.5.0/nanonext/R/messenger.R | 11 nanonext-0.5.0/nanonext/R/methods.R | 24 - nanonext-0.5.0/nanonext/R/nano.R | 40 + nanonext-0.5.0/nanonext/R/nanonext-package.R | 13 nanonext-0.5.0/nanonext/R/ncurl.R | 28 - nanonext-0.5.0/nanonext/R/protocol.R | 136 +++-- nanonext-0.5.0/nanonext/R/sendrecv.R | 85 +-- nanonext-0.5.0/nanonext/R/socket.R | 32 - nanonext-0.5.0/nanonext/R/stream.R | 8 nanonext-0.5.0/nanonext/R/utils.R | 129 ++--- nanonext-0.5.0/nanonext/README.md | 169 ++++--- nanonext-0.5.0/nanonext/configure | 75 +-- nanonext-0.5.0/nanonext/man/context.Rd | 21 nanonext-0.5.0/nanonext/man/is_aio.Rd |only nanonext-0.5.0/nanonext/man/is_nano.Rd |only nanonext-0.5.0/nanonext/man/messenger.Rd | 4 nanonext-0.5.0/nanonext/man/nano.Rd | 6 nanonext-0.5.0/nanonext/man/nano_init.Rd | 6 nanonext-0.5.0/nanonext/man/nanonext-package.Rd | 4 nanonext-0.5.0/nanonext/man/ncurl.Rd | 2 nanonext-0.5.0/nanonext/man/nng_version.Rd | 19 nanonext-0.5.0/nanonext/man/protocols.Rd | 56 +- nanonext-0.5.0/nanonext/man/recv.Rd | 21 nanonext-0.5.0/nanonext/man/recv_aio.Rd | 17 nanonext-0.5.0/nanonext/man/send.Rd | 4 nanonext-0.5.0/nanonext/man/send_aio.Rd | 4 nanonext-0.5.0/nanonext/man/socket.Rd | 12 nanonext-0.5.0/nanonext/man/stream.Rd | 8 nanonext-0.5.0/nanonext/man/subscribe.Rd | 34 - nanonext-0.5.0/nanonext/man/survey_time.Rd | 17 nanonext-0.5.0/nanonext/man/unresolved.Rd | 2 nanonext-0.5.0/nanonext/man/unsubscribe.Rd | 34 - nanonext-0.5.0/nanonext/src/aio.c | 128 ++--- nanonext-0.5.0/nanonext/src/core.c | 576 +++++++++++++++++++----- nanonext-0.5.0/nanonext/src/init.c | 21 nanonext-0.5.0/nanonext/src/nanonext.h | 23 nanonext-0.5.0/nanonext/src/opts.c | 37 + nanonext-0.5.0/nanonext/src/utils.c | 116 ++-- nanonext-0.5.0/nanonext/tests/tests.R | 120 +++-- nanonext-0.5.0/nanonext/tools/winlibs.R | 7 51 files changed, 1488 insertions(+), 1106 deletions(-)
Title: Handling Methods for Naver News Text Crawling
Description: Provides some functions to get Korean text sample from news articles in
Naver which is popular news portal service <https://news.naver.com/> in Korea.
Author: Chanyub Park [aut, cre]
Maintainer: Chanyub Park <mrchypark@gmail.com>
Diff between N2H4 versions 0.6.1 dated 2022-02-22 and 0.6.3 dated 2022-05-10
N2H4-0.6.1/N2H4/R/data.R |only N2H4-0.6.1/N2H4/data |only N2H4-0.6.1/N2H4/man/cate_list_url_ex.Rd |only N2H4-0.6.1/N2H4/man/news_url_ex.Rd |only N2H4-0.6.1/N2H4/man/query_list_url_ex.Rd |only N2H4-0.6.1/N2H4/man/video_url_ex.Rd |only N2H4-0.6.1/N2H4/tests/testthat/apis.naver.com |only N2H4-0.6.1/N2H4/tests/testthat/news.naver.com |only N2H4-0.6.1/N2H4/tests/testthat/news.naver.com.html |only N2H4-0.6.1/N2H4/tests/testthat/setup.R |only N2H4-0.6.1/N2H4/tests/testthat/sports.news.naver.com |only N2H4-0.6.3/N2H4/.aspell/defaults.R | 8 N2H4-0.6.3/N2H4/DESCRIPTION | 13 N2H4-0.6.3/N2H4/MD5 | 72 +- N2H4-0.6.3/N2H4/NAMESPACE | 3 N2H4-0.6.3/N2H4/R/N2H4-package.R | 14 N2H4-0.6.3/N2H4/R/getComment.R | 272 +++++----- N2H4-0.6.3/N2H4/R/getContent.R | 490 +++++++++---------- N2H4-0.6.3/N2H4/R/getLike.R | 73 +- N2H4-0.6.3/N2H4/R/getMainCategory.R | 84 +-- N2H4-0.6.3/N2H4/R/getMaxPageNum.R | 68 +- N2H4-0.6.3/N2H4/R/getSubCategory.R | 104 ++-- N2H4-0.6.3/N2H4/R/getUrlList.R | 105 ++-- N2H4-0.6.3/N2H4/R/setUrls.R | 206 +++---- N2H4-0.6.3/N2H4/man/N2H4-package.Rd | 46 - N2H4-0.6.3/N2H4/man/getAllComment.Rd | 55 +- N2H4-0.6.3/N2H4/man/getComment.Rd | 77 +- N2H4-0.6.3/N2H4/man/getContent.Rd | 55 +- N2H4-0.6.3/N2H4/man/getContentBody.Rd | 59 +- N2H4-0.6.3/N2H4/man/getContentDatetime.Rd | 66 +- N2H4-0.6.3/N2H4/man/getContentEditDatetime.Rd |only N2H4-0.6.3/N2H4/man/getContentPress.Rd | 63 +- N2H4-0.6.3/N2H4/man/getContentTitle.Rd | 63 +- N2H4-0.6.3/N2H4/man/getLike.Rd | 45 - N2H4-0.6.3/N2H4/man/getMainCategory.Rd | 38 - N2H4-0.6.3/N2H4/man/getMaxPageNum.Rd | 51 - N2H4-0.6.3/N2H4/man/getSubCategory.Rd | 50 - N2H4-0.6.3/N2H4/man/getUrlList.Rd | 49 - N2H4-0.6.3/N2H4/man/setUrls.Rd | 80 +-- N2H4-0.6.3/N2H4/tests/testthat/test-func.R | 107 ++-- 40 files changed, 1185 insertions(+), 1231 deletions(-)
Title: Multivariate Time Series Plot
Description: A function for plotting multivariate time series data.
Author: Roger D. Peng <rpeng@jhsph.edu>
Maintainer: Roger D. Peng <rpeng@jhsph.edu>
Diff between mvtsplot versions 1.0-1 dated 2012-03-21 and 1.0-4 dated 2022-05-10
DESCRIPTION | 18 +++++---- MD5 | 9 ++-- NAMESPACE | 28 +++++++++++++- R/mvtsplot.R | 45 ++++++++++++++++++++--- README.md |only man/mvtsplot.Rd | 106 ++++++++++++++++++++++++++++++++------------------------ 6 files changed, 140 insertions(+), 66 deletions(-)
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood. See
Clavel et al. (2015) <DOI:10.1111/2041-210X.12420>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, and Clavel & Morlon (2020) <DOI:10.1093/sysbio/syaa010>.
Author: Julien Clavel, with contributions from Aaron King, and Emmanuel Paradis
Maintainer: Julien Clavel <julien.clavel@hotmail.fr>
Diff between mvMORPH versions 1.1.5 dated 2022-05-02 and 1.1.6 dated 2022-05-10
DESCRIPTION | 8 ++-- MD5 | 70 ++++++++++++++++++++-------------------- NAMESPACE | 2 - NEWS.md | 3 + R/classes_methods.r | 13 ++++--- R/fun.r | 2 - R/multivariate.stat.r | 4 +- R/mvgls.dfa.r | 1 R/mvgls.pca.r | 2 - R/mvgls.r | 16 ++------- R/mvols.r |only R/penalized.r | 26 ++++++-------- R/plot_methods.r | 1 R/zzz.r | 2 - README.md | 14 ++------ build/vignette.rds |binary inst/doc/How_to_use_mvMORPH.pdf |binary inst/doc/tutorial_mvMORPH.pdf |binary man/EIC.Rd | 16 ++++++--- man/GIC.Rd | 12 ++++-- man/coef.mvgls.Rd | 11 +++--- man/effectsize.Rd | 1 man/fitted.mvgls.Rd | 7 ++-- man/manova.gls.Rd | 50 ++++++++++++++++++++++++---- man/mvMORPH-package.Rd | 6 ++- man/mvOU.Rd | 2 - man/mvgls.Rd | 49 +++++++++++++++++++++------- man/mvgls.dfa.Rd | 13 ++++--- man/mvgls.pca.Rd | 18 +++++----- man/mvols.Rd |only man/mvqqplot.Rd | 8 ++-- man/pairwise.contrasts.Rd | 15 ++++++-- man/pairwise.glh.Rd | 18 +++++----- man/predict.mvgls.Rd | 11 +++--- man/predict.mvgls.dfa.Rd | 9 ++++- man/residuals.mvgls.Rd | 9 ++--- man/vcov.mvgls.Rd | 7 ++-- 37 files changed, 260 insertions(+), 166 deletions(-)
Title: Degrees of Freedom of Elastic Net, Adaptive Lasso and
Generalized Elastic Net
Description: Computes the degrees of freedom of the lasso,
elastic net, generalized elastic net and adaptive lasso based
on the generalized path seeking algorithm. The optimal model
can be selected by model selection criteria including Mallows'
Cp, bias-corrected AIC (AICc), generalized cross validation
(GCV) and BIC.
Author: Kei Hirose
Maintainer: Kei Hirose <mail@keihirose.com>
Diff between msgps versions 1.3.1 dated 2019-01-27 and 1.3.4 dated 2022-05-10
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 2 +- man/msgps.Rd | 2 +- src/GPS_v3.2.c | 34 +++++++++++++++++++++++----------- 5 files changed, 34 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-30 1.1
2012-07-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-04 1.2
2012-08-02 1.1
2012-04-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-12-14 1.2
2012-12-12 1.1
2012-12-11 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-13 1.0.7
2012-08-01 1.0.6
2012-07-13 1.0.5
2012-05-02 1.0.4
2012-03-28 1.0.3
2012-02-14 1.0.2
2012-01-15 1.0.1
2011-11-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-01-13 4.3.2
2013-09-03 4.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-17 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-06-09 1.1
2014-05-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-05-07 1.0.6.1
2013-02-06 1.0.5
2013-02-03 1.0.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-10-31 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-08-19 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-05-05 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2011-03-27 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-18 0.0.16
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-06-19 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-01-08 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-26 2.0
2014-03-18 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-03-28 0.69
2012-11-05 0.68
2012-03-20 0.66
2006-11-23 0.61
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-30 3.0
2012-10-22 2.3
2012-10-18 2.2
2012-09-21 2.1
2012-07-13 2.0
2012-04-05 1.0
Title: Practical Multilevel Modeling
Description: Convenience functions and datasets to be used with Practical Multilevel Modeling using R. The package includes functions for calculating group means, group mean centered variables, and displaying some basic missing data information. A function for computing robust standard errors for linear mixed models based on Liang and Zeger (1986) <doi:10.1093/biomet/73.1.13> and Bell and 'McCaffrey' (2002) <https://www150.statcan.gc.ca/n1/en/pub/12-001-x/2002002/article/9058-eng.pdf?st=NxMjN1YZ> is included as well as a function for checking for level-one homoskedasticity (Raudenbush & Bryk, 2002, ISBN:076191904X).
Author: Francis Huang [aut, cre]
Maintainer: Francis Huang <flhuang2000@yahoo.com>
Diff between MLMusingR versions 0.1.0 dated 2022-01-11 and 0.2.0 dated 2022-05-10
MLMusingR-0.1.0/MLMusingR/build |only MLMusingR-0.2.0/MLMusingR/DESCRIPTION | 16 - MLMusingR-0.2.0/MLMusingR/MD5 | 31 +- MLMusingR-0.2.0/MLMusingR/NAMESPACE | 13 - MLMusingR-0.2.0/MLMusingR/NEWS.md | 8 MLMusingR-0.2.0/MLMusingR/R/engage.R |only MLMusingR-0.2.0/MLMusingR/R/engage.miss.R |only MLMusingR-0.2.0/MLMusingR/R/globals.R | 2 MLMusingR-0.2.0/MLMusingR/R/group_mean.R | 45 +++ MLMusingR-0.2.0/MLMusingR/R/helper.R |only MLMusingR-0.2.0/MLMusingR/R/nmiss.R | 2 MLMusingR-0.2.0/MLMusingR/R/robust_mixed.R | 307 ++++++++++++++++-------- MLMusingR-0.2.0/MLMusingR/R/satdf.R |only MLMusingR-0.2.0/MLMusingR/README.md | 2 MLMusingR-0.2.0/MLMusingR/data/engage.miss.rda |only MLMusingR-0.2.0/MLMusingR/data/engage.rda |only MLMusingR-0.2.0/MLMusingR/man/MatSqrtInverse.Rd |only MLMusingR-0.2.0/MLMusingR/man/engage.Rd |only MLMusingR-0.2.0/MLMusingR/man/engage.miss.Rd |only MLMusingR-0.2.0/MLMusingR/man/group_mean.Rd | 6 MLMusingR-0.2.0/MLMusingR/man/robust_mixed.Rd | 99 ++++--- MLMusingR-0.2.0/MLMusingR/man/satdf.Rd |only 22 files changed, 357 insertions(+), 174 deletions(-)
Title: MINimal VALidation for Stoichiometric Reactions
Description: For a given set of stoichiometric reactions, this package
evaluates the mass and charge balance, extracts all reactants, products, orphan
metabolites, metabolite names and compartments. Also are included some options
to characterize and write models in TSV and SBML formats.
Author: Daniel Osorio [aut, cre],
Janneth Gonzalez [aut, ths],
Andres Pinzon [aut, ths]
Maintainer: Daniel Osorio <dcosorioh@unal.edu.co>
Diff between minval versions 0.8-1 dated 2018-04-11 and 0.8-2 dated 2022-05-10
DESCRIPTION | 10 MD5 | 52 - NAMESPACE | 2 NEWS.md | 3 R/downloadChEBI.R | 17 R/internalFunctions.R | 4 R/validateSyntax.R | 8 R/writeSBMLmod.R | 8 R/writeTSVmod.R | 9 build/vignette.rds |binary inst/doc/MINVALintroduction.R | 70 +- inst/doc/MINVALintroduction.Rmd | 20 inst/doc/MINVALintroduction.html | 974 ++++++++++++++++++++++++------------ inst/doc/characterizeReactions.R | 16 inst/doc/characterizeReactions.Rmd | 4 inst/doc/characterizeReactions.html | 511 ++++++++++++++---- man/characterizeReactions.Rd | 2 man/checkBalance.Rd | 13 man/compartments.Rd | 2 man/metabolites.Rd | 2 man/orphanMetabolites.Rd | 2 man/stoichiometricMatrix.Rd | 2 man/validateSyntax.Rd | 2 man/writeSBMLmod.Rd | 5 man/writeTSVmod.Rd | 4 vignettes/MINVALintroduction.Rmd | 20 vignettes/characterizeReactions.Rmd | 4 27 files changed, 1225 insertions(+), 541 deletions(-)
Title: Mediterranean Forest Simulation
Description: Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].
Author: Miquel De Caceres [aut, cre] ,
Shengli Huang [aut] ,
Victor Granda [aut] ,
Antoine Cabon [aut] ,
Aitor Ameztegui [ctb] ,
Jordi Martinez-Vilalta [ctb] ,
Maurizio Mencuccini [ctb] ,
Nicolas Martin-StPaul [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfate versions 2.3.7 dated 2021-12-16 and 2.7.3 dated 2022-05-10
medfate-2.3.7/medfate/R/plot.fordyn.R |only medfate-2.3.7/medfate/R/plotutils.R |only medfate-2.3.7/medfate/R/spwb_resistances.R |only medfate-2.3.7/medfate/R/spwb_stress.R |only medfate-2.3.7/medfate/R/spwb_waterUseEfficiency.R |only medfate-2.3.7/medfate/R/summary.growth.R |only medfate-2.3.7/medfate/build |only medfate-2.3.7/medfate/inst/doc |only medfate-2.3.7/medfate/man/spwb_resistances.Rd |only medfate-2.3.7/medfate/man/spwb_stress.Rd |only medfate-2.3.7/medfate/man/spwb_waterUseEfficiency.Rd |only medfate-2.3.7/medfate/src/transpiration.cpp |only medfate-2.3.7/medfate/vignettes |only medfate-2.7.3/medfate/DESCRIPTION | 44 medfate-2.7.3/medfate/MD5 | 250 - medfate-2.7.3/medfate/NAMESPACE | 16 medfate-2.7.3/medfate/R/RcppExports.R | 98 medfate-2.7.3/medfate/R/defaultControl.R | 35 medfate-2.7.3/medfate/R/defaultManagementFunction.R |only medfate-2.7.3/medfate/R/droughtStress.R |only medfate-2.7.3/medfate/R/evaluation.R | 175 medfate-2.7.3/medfate/R/extractSubdaily.R | 34 medfate-2.7.3/medfate/R/fireHazard.R |only medfate-2.7.3/medfate/R/fordyn.R | 501 +- medfate-2.7.3/medfate/R/fordynutils.R |only medfate-2.7.3/medfate/R/optimization.R | 12 medfate-2.7.3/medfate/R/plot.forest.R |only medfate-2.7.3/medfate/R/plot.spwb.R | 1006 +--- medfate-2.7.3/medfate/R/plot.spwb_day.R | 86 medfate-2.7.3/medfate/R/plot_internals.R |only medfate-2.7.3/medfate/R/plot_lowlevel.R |only medfate-2.7.3/medfate/R/resistances.R |only medfate-2.7.3/medfate/R/shinyplot.R | 379 - medfate-2.7.3/medfate/R/stand_metrics.R |only medfate-2.7.3/medfate/R/summary.forest.R | 29 medfate-2.7.3/medfate/R/summary.spwb.R | 132 medfate-2.7.3/medfate/R/sysdata.rda |binary medfate-2.7.3/medfate/R/waterUseEfficiency.R |only medfate-2.7.3/medfate/R/welcome.R |only medfate-2.7.3/medfate/R/woodformation_relativeGrowthRate.R |only medfate-2.7.3/medfate/data/SpParamsDefinition.rda |binary medfate-2.7.3/medfate/data/SpParamsMED.rda |binary medfate-2.7.3/medfate/data/SpParamsUS.rda |binary medfate-2.7.3/medfate/data/exampleforestMED.rda |binary medfate-2.7.3/medfate/data/exampleobs.rda |binary medfate-2.7.3/medfate/inst/include/medfate_RcppExports.h | 113 medfate-2.7.3/medfate/man/SFM_metric.Rd | 2 medfate-2.7.3/medfate/man/SpParams.Rd | 8 medfate-2.7.3/medfate/man/VerticalProfiles.Rd | 2 medfate-2.7.3/medfate/man/carbon.Rd | 19 medfate-2.7.3/medfate/man/defaultControl.Rd | 48 medfate-2.7.3/medfate/man/defaultManagementFunction.Rd |only medfate-2.7.3/medfate/man/droughtStress.Rd |only medfate-2.7.3/medfate/man/evaluation.Rd | 29 medfate-2.7.3/medfate/man/exampleforest.Rd | 2 medfate-2.7.3/medfate/man/exampleobs.Rd | 2 medfate-2.7.3/medfate/man/extractSubdaily.Rd | 6 medfate-2.7.3/medfate/man/fireHazard.Rd |only medfate-2.7.3/medfate/man/fire_behaviour.Rd | 4 medfate-2.7.3/medfate/man/fordyn.Rd | 50 medfate-2.7.3/medfate/man/forest.Rd | 4 medfate-2.7.3/medfate/man/fuel_properties.Rd | 9 medfate-2.7.3/medfate/man/growth.Rd | 52 medfate-2.7.3/medfate/man/hydraulics_conductancefunctions.Rd | 2 medfate-2.7.3/medfate/man/hydraulics_scalingconductance.Rd | 9 medfate-2.7.3/medfate/man/hydrology_soil.Rd | 2 medfate-2.7.3/medfate/man/hydrology_verticalInputs.Rd | 4 medfate-2.7.3/medfate/man/light.Rd | 7 medfate-2.7.3/medfate/man/modelInput.Rd | 27 medfate-2.7.3/medfate/man/modifySpParams.Rd | 6 medfate-2.7.3/medfate/man/moisture.Rd | 27 medfate-2.7.3/medfate/man/mortality.Rd | 12 medfate-2.7.3/medfate/man/optimization.Rd | 14 medfate-2.7.3/medfate/man/plant_values.Rd | 5 medfate-2.7.3/medfate/man/plot.forest.Rd |only medfate-2.7.3/medfate/man/plot.spwb.Rd | 149 medfate-2.7.3/medfate/man/plot.spwb_day.Rd | 18 medfate-2.7.3/medfate/man/recruitment.Rd |only medfate-2.7.3/medfate/man/resistances.Rd |only medfate-2.7.3/medfate/man/shinyplot.Rd | 27 medfate-2.7.3/medfate/man/soil.Rd | 6 medfate-2.7.3/medfate/man/soil_texture.Rd | 8 medfate-2.7.3/medfate/man/soil_thermodynamics.Rd | 4 medfate-2.7.3/medfate/man/species_values.Rd | 4 medfate-2.7.3/medfate/man/spwb.Rd | 29 medfate-2.7.3/medfate/man/spwb_day.Rd | 18 medfate-2.7.3/medfate/man/stand_values.Rd | 15 medfate-2.7.3/medfate/man/summary.spwb.Rd | 16 medfate-2.7.3/medfate/man/transp_maximumTranspirationModel.Rd | 4 medfate-2.7.3/medfate/man/transp_modes.Rd | 18 medfate-2.7.3/medfate/man/transp_stomatalregulation.Rd | 9 medfate-2.7.3/medfate/man/waterUseEfficiency.Rd |only medfate-2.7.3/medfate/man/woodformation.Rd | 14 medfate-2.7.3/medfate/src/RcppExports.cpp | 456 + medfate-2.7.3/medfate/src/carbon.cpp | 113 medfate-2.7.3/medfate/src/carbon.h | 2 medfate-2.7.3/medfate/src/firebehaviour.cpp | 13 medfate-2.7.3/medfate/src/forestutils.cpp | 121 medfate-2.7.3/medfate/src/forestutils.h | 3 medfate-2.7.3/medfate/src/fuelstructure.cpp | 33 medfate-2.7.3/medfate/src/growth.cpp | 2443 ++++------ medfate-2.7.3/medfate/src/growth.h | 12 medfate-2.7.3/medfate/src/hydraulics.cpp | 60 medfate-2.7.3/medfate/src/hydraulics.h | 3 medfate-2.7.3/medfate/src/hydrology.cpp | 18 medfate-2.7.3/medfate/src/incgamma.cpp | 20 medfate-2.7.3/medfate/src/lightextinction.cpp | 48 medfate-2.7.3/medfate/src/modelInput.cpp | 373 - medfate-2.7.3/medfate/src/paramutils.cpp | 254 - medfate-2.7.3/medfate/src/phenology.cpp | 6 medfate-2.7.3/medfate/src/photosynthesis.cpp | 2 medfate-2.7.3/medfate/src/root.cpp | 14 medfate-2.7.3/medfate/src/root.h | 1 medfate-2.7.3/medfate/src/soil.cpp | 70 medfate-2.7.3/medfate/src/soil.h | 2 medfate-2.7.3/medfate/src/spwb.cpp | 366 - medfate-2.7.3/medfate/src/spwb.h | 2 medfate-2.7.3/medfate/src/tissuemoisture.cpp | 227 medfate-2.7.3/medfate/src/tissuemoisture.h | 2 medfate-2.7.3/medfate/src/transpiration.h | 4 medfate-2.7.3/medfate/src/transpiration_advanced.cpp |only medfate-2.7.3/medfate/src/transpiration_basic.cpp |only medfate-2.7.3/medfate/src/windKatul.cpp | 2 medfate-2.7.3/medfate/src/woodformation.cpp | 17 medfate-2.7.3/medfate/src/woodformation.h | 2 medfate-2.7.3/medfate/tests |only 126 files changed, 4576 insertions(+), 3714 deletions(-)
Title: Nonparametric Estimation of Measurement Error Models
Description: Provide nonparametric methods for mean regression model, modal regression and conditional density estimation in the presence/absence of measurement error. Bandwidth selection is also provided for each method. See Huang and Zhou (2017) <doi:10.1080/10485252.2017.1303060>, Zhou and Huang (2016) <doi:10.1214/16-EJS1210>, Huang and Zhou (2020) <doi:10.1214/20-EJS1688>, and Zhou and Huang (2019) <doi:10.1080/03610918.2017.1402044>.
Author: Haiming Zhou [aut, cre, cph],
Xianzheng Huang [aut]
Maintainer: Haiming Zhou <haiming2019@gmail.com>
Diff between lpme versions 1.1.2 dated 2021-07-13 and 1.1.3 dated 2022-05-10
DESCRIPTION | 12 +- MD5 | 18 +-- inst/CITATION | 30 +++--- man/densityreg.Rd | 244 ++++++++++++++++++++++++------------------------- man/densityregbw.Rd | 246 +++++++++++++++++++++++++------------------------- man/meanreg.Rd | 194 +++++++++++++++++++-------------------- man/meanregbwSIMEX.Rd | 208 +++++++++++++++++++++--------------------- man/modereg.Rd | 222 ++++++++++++++++++++++----------------------- man/moderegbw.Rd | 186 ++++++++++++++++++------------------- man/moderegbwSIMEX.Rd | 214 +++++++++++++++++++++---------------------- 10 files changed, 787 insertions(+), 787 deletions(-)
Title: Test of Stationarity and Localized Autocovariance
Description: Provides test of second-order stationarity for time
series (for dyadic and arbitrary-n length data). Provides
localized autocovariance, with confidence intervals,
for locally stationary (nonstationary) time series.
See Nason, G P (2013) "A test for second-order stationarity and
approximate confidence intervals for localized autocovariance
for locally stationary time series." Journal of the Royal Statistical
Society, Series B, 75, 879-904. <doi:10.1111/rssb.12015>.
Author: Guy Nason [aut, cre]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between locits versions 1.7.3 dated 2016-11-14 and 1.7.5 dated 2022-05-10
DESCRIPTION | 21 ++++++---- MD5 | 92 ++++++++++++++++++++++++------------------------ NAMESPACE | 2 - R/EstBetaCov.R | 3 + R/Rvarlacf.R | 3 + build |only inst/CHANGES | 6 +++ inst/CITATION | 3 + man/AutoBestBW.Rd | 3 + man/Cvarip2.Rd | 3 + man/EstBetaCov.Rd | 9 ++++ man/HwdS.Rd | 3 + man/Rvarlacf.Rd | 12 ++++-- man/StoreStatistics.Rd | 3 + man/covI.Rd | 3 + man/covIwrap.Rd | 5 +- man/ewspec3.Rd | 3 + man/ewspecHaarNonPer.Rd | 3 + man/getridofendNA.Rd | 3 + man/hwt.Rd | 1 man/hwtos.Rd | 1 man/hwtos2.Rd | 1 man/idlastzero.Rd | 3 + man/lacf.Rd | 1 man/littlevar.Rd | 3 + man/locits-package.Rd | 3 + man/mkcoef.Rd | 3 + man/plot.hwtANYN.Rd | 1 man/plot.lacf.Rd | 1 man/plot.lacfCI.Rd | 3 + man/plot.tos.Rd | 3 + man/plot.tosANYN.Rd | 3 + man/print.hwtANYN.Rd | 3 + man/print.lacf.Rd | 1 man/print.lacfCI.Rd | 3 + man/print.tos.Rd | 3 + man/print.tosANYN.Rd | 3 + man/runmean.Rd | 3 + man/summary.hwtANYN.Rd | 3 + man/summary.lacf.Rd | 1 man/summary.lacfCI.Rd | 3 + man/summary.tos.Rd | 3 + man/summary.tosANYN.Rd | 3 + man/tvar1sim.Rd | 3 + man/varip2.Rd | 3 + man/whichlevel.Rd | 3 + src/CPkPlj.c | 79 +++++++++++++++++++++++++++-------------- src/locits_init.c |only 48 files changed, 206 insertions(+), 118 deletions(-)
Title: Add Standardized Regression Coefficients to lm-Objects
Description: Adds standardized regression coefficients to objects created by lm. Also extends the S3 methods print, summary and coef with additional boolean argument standardized.
Author: Stefan Behrendt [aut, cre]
Maintainer: Stefan Behrendt <r@behrendt-stefan.de>
Diff between lm.beta versions 1.5-1 dated 2014-12-28 and 1.6-2 dated 2022-05-10
DESCRIPTION | 12 +++++++----- MD5 | 34 ++++++++++++++++++++++------------ NAMESPACE | 3 ++- NEWS | 10 ++++++++++ R/coef.lm.beta.R | 4 ++-- R/lm.beta.R | 13 ++++++++----- R/print.lm.beta.R | 10 +++++----- R/summary.lm.beta.R | 12 ++++++------ build |only inst |only man/coef.lm.beta.Rd | 4 ++-- man/lm.beta-package.Rd | 6 +++--- man/lm.beta.Rd | 21 +++++++++++++++------ man/print.lm.beta.Rd | 4 ++-- man/summary.lm.beta.Rd | 4 ++-- vignettes |only 16 files changed, 86 insertions(+), 51 deletions(-)
Title: Import Output from 'LISREL' into 'R'
Description: This is an unofficial package aimed at automating the import of
'LISREL' <https://ssicentral.com/index.php/products/lisrel/> output
in R. This package or its maintainer is not in any way affiliated with
the creators of 'LISREL' and 'SSI, Inc'.
Author: Sacha Epskamp
Maintainer: Sacha Epskamp <mail@sachaepskamp.com>
Diff between lisrelToR versions 0.1.4 dated 2013-05-08 and 0.1.5 dated 2022-05-10
DESCRIPTION | 17 +- MD5 | 34 ++-- NAMESPACE | 9 - NEWS | 25 +-- R/findCov.R | 36 ++-- R/findFit.R | 38 ++-- R/findMatrix.R | 74 ++++----- R/getMatrix.R | 362 +++++++++++++++++++++++------------------------ R/lisrelMatrix.R | 126 ++++++++-------- R/matRange.R | 28 +-- R/methods.R | 36 ++-- R/readLisrel.R | 246 +++++++++++++++---------------- R/zzz.R | 14 - README.md | 6 man/lisrelMatrix.Rd | 204 +++++++++++++------------- man/lisrelToR-package.Rd | 40 ++--- man/methods.Rd | 48 +++--- man/readLisrel.Rd | 208 +++++++++++++-------------- 18 files changed, 777 insertions(+), 774 deletions(-)
Title: Lemna Ecotox Effect Model
Description: The reference implementation of model equations and default
parameters for the toxicokinetic-toxicodynamic (TKTD) model of the Lemna
(duckweed) aquatic plant. Lemna is a standard test macrophyte used in ecotox
effect studies. The model was described and published by the SETAC Europe
Interest Group Effect Modeling. It is a refined description of the Lemna
TKTD model published by Schmitt et al. (2013)
<doi:10.1016/j.ecolmodel.2013.01.017>.
Author: Nils Kehrein [aut, cre],
SETAC Europe IG Effect Modeling [ccp]
Maintainer: Nils Kehrein <nils.kehrein@gmail.com>
Diff between lemna versions 0.9.2 dated 2022-03-31 and 1.0.0 dated 2022-05-10
DESCRIPTION | 19 +- LICENSE | 2 MD5 | 36 ++-- NEWS.md | 11 + R/lemna.R | 27 ++- R/lemna_ode.R | 262 +++++++++++++++++----------------- R/param.R | 11 - README.md | 19 +- build/partial.rdb |binary inst/doc/lemna-introduction.Rmd | 11 - inst/doc/lemna-introduction.html | 38 ++-- inst/doc/lemna-verification.Rmd | 11 - inst/doc/lemna-verification.html | 16 +- man/lemna.Rd | 9 - man/param_defaults.Rd | 239 +++++++++++++++---------------- src/lemna.c | 2 tests/testthat/test-verify-variable.R | 3 vignettes/lemna-introduction.Rmd | 11 - vignettes/lemna-verification.Rmd | 11 - 19 files changed, 385 insertions(+), 353 deletions(-)
Title: R Implementation of Leiden Clustering Algorithm
Description: Implements the 'Python leidenalg' module to be called in R.
Enables clustering using the leiden algorithm for partition a graph into communities.
See the 'Python' repository for more details: <https://github.com/vtraag/leidenalg>
Traag et al (2018) From Louvain to Leiden: guaranteeing well-connected communities. <arXiv:1810.08473>.
Author: S. Thomas Kelly [aut, cre, trl],
Vincent A. Traag [com]
Maintainer: S. Thomas Kelly <tomkellygenetics@gmail.com>
Diff between leiden versions 0.3.10 dated 2022-04-28 and 0.4.2 dated 2022-05-10
DESCRIPTION | 16 MD5 | 50 NAMESPACE | 9 NEWS.md | 26 R/find_partition.R | 5 R/leiden.R | 220 build/vignette.rds |binary inst/CITATION | 7 inst/doc/benchmarking.R | 142 inst/doc/benchmarking.Rmd | 193 inst/doc/benchmarking.html |142679 ++++------------------------------------ inst/doc/run_bipartite.html | 40 inst/doc/run_igraph.html | 42 inst/doc/run_leiden.R | 2 inst/doc/run_leiden.Rmd | 2 inst/doc/run_leiden.html | 34 inst/doc/run_multiplex.R | 46 inst/doc/run_multiplex.Rmd | 46 inst/doc/run_multiplex.html | 76 man/leiden.Rd | 5 tests/testthat/test_igraph.R | 123 tests/testthat/test_multiplex.R | 26 tests/testthat/test_weighted.R | 47 vignettes/benchmarking.Rmd | 193 vignettes/run_leiden.Rmd | 2 vignettes/run_multiplex.Rmd | 46 26 files changed, 16593 insertions(+), 127484 deletions(-)
Title: Langevin Tour
Description: An HTML widget that randomly tours 2D projections of numerical data. A random walk through projections of the data is shown. The user can manipulate the plot to use specified axes, or turn on projection pursuit to find an informative projection of the data. Groups within the data can be hidden or shown, as can particular axes. Known projections of interest can be added as "extra axes" and also manipulated. The underlying method to produce the random walk and projection pursuit uses Langevin dynamics. The widget can be used from within R, or included in a self-contained Rmarkdown document, or used in a Shiny app.
Author: Paul Harrison [aut, cre]
Maintainer: Paul Harrison <pfh@logarithmic.net>
Diff between langevitour versions 0.2 dated 2022-03-23 and 0.4 dated 2022-05-10
DESCRIPTION | 14 - MD5 | 28 ++- NAMESPACE | 1 NEWS.md | 13 + R/denoise.R |only R/langevitour.R | 51 ++++++- README.md | 15 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/usage.R | 4 inst/doc/usage.Rmd | 35 +++- inst/doc/usage.html | 59 ++++++-- inst/htmlwidgets/lib/langevitour.js | 262 ++++++++++++++++++++++++++++-------- man/knnDenoise.Rd |only man/langevitour.Rd | 22 ++- vignettes/usage.Rmd | 35 +++- 16 files changed, 435 insertions(+), 104 deletions(-)
Title: Miscellaneous Utilities and Functions
Description: Miscellaneous tools and functions,
including: generate descriptive statistics tables,
format output, visualize relations among variables or check
distributions, and generic functions for residual and
model diagnostics.
Author: Joshua F. Wiley [aut, cre]
Maintainer: Joshua F. Wiley <jwiley.psych@gmail.com>
Diff between JWileymisc versions 1.2.0 dated 2020-08-31 and 1.3.0 dated 2022-05-10
JWileymisc-1.2.0/JWileymisc/tests/testthat/test-styler.R |only JWileymisc-1.3.0/JWileymisc/DESCRIPTION | 20 JWileymisc-1.3.0/JWileymisc/MD5 | 58 - JWileymisc-1.3.0/JWileymisc/NAMESPACE | 9 JWileymisc-1.3.0/JWileymisc/NEWS.md | 20 JWileymisc-1.3.0/JWileymisc/R/descriptives.R | 74 + JWileymisc-1.3.0/JWileymisc/R/utils.R | 149 ++ JWileymisc-1.3.0/JWileymisc/R/visual_acuity.R | 3 JWileymisc-1.3.0/JWileymisc/README.md | 20 JWileymisc-1.3.0/JWileymisc/build/partial.rdb |only JWileymisc-1.3.0/JWileymisc/build/vignette.rds |binary JWileymisc-1.3.0/JWileymisc/inst/doc/diagnostics-vignette.html | 435 ++++---- JWileymisc-1.3.0/JWileymisc/inst/doc/exploratory-vignette.html | 513 +++++----- JWileymisc-1.3.0/JWileymisc/inst/doc/model-test-vignette.html | 249 ++-- JWileymisc-1.3.0/JWileymisc/man/compressedrds.Rd |only JWileymisc-1.3.0/JWileymisc/man/diffCircular.Rd |only JWileymisc-1.3.0/JWileymisc/man/egltable.Rd | 4 JWileymisc-1.3.0/JWileymisc/man/hashDataset.Rd |only JWileymisc-1.3.0/JWileymisc/man/vainternal.Rd | 3 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-APAStyler.R |only JWileymisc-1.3.0/JWileymisc/tests/testthat/test-SEMSummary.R | 72 - JWileymisc-1.3.0/JWileymisc/tests/testthat/test-compareIVs.R | 2 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-descriptives.R | 198 +-- JWileymisc-1.3.0/JWileymisc/tests/testthat/test-diagnostics.R | 29 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-distributions.R | 48 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-format.R |only JWileymisc-1.3.0/JWileymisc/tests/testthat/test-lm2.R | 64 - JWileymisc-1.3.0/JWileymisc/tests/testthat/test-modelTest.R | 67 - JWileymisc-1.3.0/JWileymisc/tests/testthat/test-paramsummary.R |only JWileymisc-1.3.0/JWileymisc/tests/testthat/test-plot.R | 17 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-scoring.R | 87 - JWileymisc-1.3.0/JWileymisc/tests/testthat/test-star.R |only JWileymisc-1.3.0/JWileymisc/tests/testthat/test-utils.R | 36 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-visual-acuity.R | 5 JWileymisc-1.3.0/JWileymisc/tests/testthat/test-winsorizor.R |only 35 files changed, 1241 insertions(+), 941 deletions(-)
Title: Tools for Easy Use of 'e-Stat' API
Description: Provides tools for using the API of 'e-Stat' (<https://www.e-stat.go.jp/>), a portal site for Japanese government statistics.
Includes functions for automatic query generation, data collection and formatting.
Author: Mizuki Uchida [aut, cre]
Maintainer: Mizuki Uchida <uchidamizuki@vivaldi.net>
Diff between jpstat versions 0.2.0 dated 2022-02-24 and 0.2.1 dated 2022-05-10
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/estat.R | 2 +- man/jpstat.Rd | 1 + 5 files changed, 15 insertions(+), 9 deletions(-)
Title: Interpolation Methods
Description: Bivariate data interpolation on regular and irregular
grids, either linear or using splines are the main part of this
package. It is intended to provide FOSS replacement functions for
the ACM licensed akima::interp and tripack::tri.mesh functions.
Linear interpolation is implemented in
interp::interp(..., method="linear"), this corresponds to the call
akima::interp(..., linear=TRUE) which is the default setting and
covers most of akima::interp use cases in depending packages.
A re-implementation of Akimas irregular grid spline
interpolation (akima::interp(..., linear=FALSE)) is now also
available via interp::interp(..., method="akima").
Estimators for partial derivatives are now also available in
interp::locpoly(), these are a prerequisite for the spline interpolation.
The basic part is a GPLed triangulation algorithm (sweep hull
algorithm by David Sinclair) providing the starting point for the
irregular grid interpolator. As side effect this algorithm is also
used to provide replacements for almost all functions of the tripack
package which also suffers from the same ACM license restrictions.
All functions are designed to be backward compatible with their
akima / tripack counterparts.
Author: Albrecht Gebhardt [aut, cre, cph],
Roger Bivand [aut],
David Sinclair [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between interp versions 1.1-1 dated 2022-05-03 and 1.1-2 dated 2022-05-10
DESCRIPTION | 39 ++++++++++--------- MD5 | 20 +++++----- R/RcppExports.R | 2 - R/interp.R | 4 +- man/interp.Rd | 100 +++++++++++++++++++++++++++++++++++++++++--------- man/interp2xyz.Rd | 4 -- man/locpoly.Rd | 14 ++++--- man/tri.mesh.Rd | 6 +-- man/voronoi.mosaic.Rd | 4 +- src/init.c | 2 - src/interp.cpp | 2 - 11 files changed, 132 insertions(+), 65 deletions(-)
More information about independenceWeights at CRAN
Permanent link
Title: Build, Deploy and Evaluate Hybrid Ensembles
Description: Functions to build and deploy a hybrid ensemble consisting of different sub-ensembles such as bagged logistic regressions, random forest, stochastic boosting, kernel factory, bagged neural networks, bagged support vector machines, rotation forest, bagged k-nearest neighbors, and bagged naive Bayes. Functions to cross-validate the hybrid ensemble and plot and summarize the results are also provided. There is also a function to assess the importance of the predictors.
Author: Michel Ballings, Dauwe Vercamer, Matthias Bogaert, and Dirk Van den Poel
Maintainer: Michel Ballings <Michel.Ballings@GMail.com>
Diff between hybridEnsemble versions 1.0.0 dated 2015-05-30 and 1.7.8 dated 2022-05-10
DESCRIPTION | 17 MD5 | 38 NAMESPACE | 5 R/CVhybridEnsemble.R | 905 +++++++++++++----- R/auxiliary.R | 465 +++++---- R/hybridEnsemble.R | 1799 ++++++++++++++++++++---------------- R/hybridEnsembleNews.R | 4 R/importance.hybridEnsemble.R | 4 R/plot.CVhybridEnsemble.R | 12 R/predict.hybridEnsemble.R | 194 +++ R/summary.CVhybridEnsemble.R | 27 inst/NEWS | 52 - man/CVhybridEnsemble.Rd | 136 ++ man/hybridEnsemble.Rd | 143 ++ man/hybridEnsembleNews.Rd | 11 man/importance.hybridEnsemble.Rd | 28 man/plot.CVhybridEnsemble.Rd | 16 man/predict.hybridEnsemble.Rd | 17 man/summary.CVhybridEnsemble.Rd | 32 tests/testthat/test-mainfunctions.r | 16 20 files changed, 2472 insertions(+), 1449 deletions(-)
More information about hybridEnsemble at CRAN
Permanent link
Title: Miscellaneous Convenience Functions and Dataset
Description: Miscellaneous convenience functions and wrapper functions
to convert frequencies between Hz, semitones, mel and Bark,
to create a matrix of dummy columns from a factor,
to determine whether x lies in range [a,b],
and to add a bracketed line to an existing plot.
This package also contains an example data set of a stratified sample
of 80 talkers of Dutch.
Author: Hugo Quene [aut, cre]
Maintainer: Hugo Quene <h.quene@uu.nl>
Diff between hqmisc versions 0.1-1 dated 2014-03-10 and 0.2-1 dated 2022-05-10
DESCRIPTION | 26 ++++++++++++++------------ MD5 | 12 ++++++------ NAMESPACE | 1 + R/hqmisc.R | 4 ++-- data/talkers.rda |binary man/as.dummies.Rd | 4 +++- man/f2st.Rd | 4 ++-- 7 files changed, 28 insertions(+), 23 deletions(-)
Title: Horn's (1965) Test to Determine the Number of Components/Factors
Description: A stand-alone function that generates a user specified number of random datasets and computes eigenvalues using the random datasets (i.e., implements Horn's [1965, Psychometrika] parallel analysis <https://link.springer.com/article/10.1007/BF02289447>). Users then compare the resulting eigenvalues (the mean or the specified percentile) from the random datasets (i.e., eigenvalues resulting from noise) to the eigenvalues generated with the user's data. Can be used for both principal components analysis (PCA) and common/exploratory factor analysis (EFA). The output table shows how large eigenvalues can be as a result of merely using randomly generated datasets. If the user's own dataset has actual eigenvalues greater than the corresponding eigenvalues, that lends support to retain that factor/component. In other words, if the i(th) eigenvalue from the actual data was larger than the percentile of the (i)th eigenvalue generated using randomly generated data, empirical support is provided to retain that factor/component. Horn, J. (1965). A rationale and test for the number of factors in factor analysis. Psychometrika, 32, 179-185.
Author: Francis Huang <huangf@missouri.edu>
Maintainer: Francis Huang <huangf@missouri.edu>
Diff between hornpa versions 1.0 dated 2015-03-02 and 1.1.0 dated 2022-05-10
DESCRIPTION | 15 +++++++------ MD5 | 9 ++++---- NAMESPACE | 5 +++- NEWS.md |only R/hornpa.R | 65 +++++++++++++++++++++++++++++----------------------------- man/hornpa.Rd | 14 +++++------- 6 files changed, 56 insertions(+), 52 deletions(-)
Title: The Lasso for Tweedie's Compound Poisson Model Using an IRLS-BMD
Algorithm
Description: The Tweedie lasso model implements an iteratively reweighed least square (IRLS) strategy that incorporates a blockwise majorization decent (BMD) method, for efficiently computing solution paths of the (grouped) lasso and the (grouped) elastic net methods.
Author: Wei Qian <weiqian@stat.umn.edu>, Yi Yang <yiyang@umn.edu>, Hui Zou <hzou@stat.umn.edu>
Maintainer: Wei Qian <weiqian@stat.umn.edu>
Diff between HDtweedie versions 1.1 dated 2013-10-22 and 1.2 dated 2022-05-10
HDtweedie-1.1/HDtweedie/COPYING |only HDtweedie-1.2/HDtweedie/ChangeLog |only HDtweedie-1.2/HDtweedie/DESCRIPTION | 15 +++++----- HDtweedie-1.2/HDtweedie/MD5 | 29 ++++++++++---------- HDtweedie-1.2/HDtweedie/NAMESPACE | 6 ++++ HDtweedie-1.2/HDtweedie/man/HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/auto.Rd | 12 ++++---- HDtweedie-1.2/HDtweedie/man/coef.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/coef.cv.HDtweedie.Rd | 6 ++-- HDtweedie-1.2/HDtweedie/man/cv.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/plot.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/plot.cv.HDtweedie.Rd | 5 +-- HDtweedie-1.2/HDtweedie/man/predict.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/predict.cv.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/man/print.HDtweedie.Rd | 4 +- HDtweedie-1.2/HDtweedie/src/init.c |only HDtweedie-1.2/HDtweedie/src/tweediegrpnet.f90 | 7 ++-- 17 files changed, 58 insertions(+), 50 deletions(-)
Title: Hill/Bliss Independence Model for Combination Vaccines
Description: Calculate expected relative risk and proportion protected assuming normally distributed log10 transformed antibody dose for a several component vaccine. Uses Hill models for each component which are combined under Bliss independence. See Saul and Fay, 2007 <DOI:10.1371/journal.pone.0000850>.
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between hbim versions 1.0.3 dated 2014-03-05 and 1.1 dated 2022-05-10
Changelog | 4 ++++ DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 5 ++++- build/vignette.rds |binary inst/doc/hbimdetails.pdf |binary man/hbim-package.Rd | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Fits Geographically Weighted Regression Models with Diagnostic
Tools
Description: Fits geographically weighted regression (GWR) models and has tools to diagnose and remediate collinearity in the GWR models. Also fits geographically weighted ridge regression (GWRR) and geographically weighted lasso (GWL) models. See Wheeler (2009) <doi:10.1068/a40256> and Wheeler (2007) <doi:10.1068/a38325> for more details.
Author: David Wheeler
Maintainer: David Wheeler <dcwheels@gmail.com>
Diff between gwrr versions 0.2-1 dated 2013-06-19 and 0.2-2 dated 2022-05-10
DESCRIPTION | 17 +++++++---------- MD5 | 14 +++++++------- NAMESPACE | 5 ++++- R/gwl.est.r | 4 ++-- R/gwr.bw.est.R | 2 +- R/gwr.est.R | 2 +- R/gwr.vdp.R | 2 +- R/gwrr.est.R | 2 +- 8 files changed, 24 insertions(+), 24 deletions(-)
Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre] ,
Henrik Singmann [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.7.2 dated 2022-03-17 and 0.7.3 dated 2022-05-10
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Title: Graphical Independence Networks
Description: Probability propagation in graphical independence networks, also
known as Bayesian networks or probabilistic expert systems. Documentation
of the package is provided in vignettes included in the package and in
the paper by Højsgaard (2012, <doi:10.18637/jss.v046.i10>).
See 'citation("gRain")' for details.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRain versions 1.3.9 dated 2022-04-03 and 1.3.10 dated 2022-05-10
DESCRIPTION | 6 +- MD5 | 20 ++++---- NAMESPACE | 14 +++++ NEWS | 6 ++ R/generics.R | 112 +++++++++++++++++++++++++++++++++++++---------- R/propagate.R | 32 +++++++------ build/vignette.rds |binary inst/doc/grain-intro.pdf |binary man/generics.Rd | 34 ++++++++++---- man/grain_propagate.Rd | 4 - src/propagate.cpp | 34 ++++++-------- 11 files changed, 180 insertions(+), 82 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-30 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2009-10-12 1.3
2008-09-01 1.2
2008-07-07 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-04-21 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-04-13 1.1
2014-04-15 1.0
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2014-07-31 1.0
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2012-09-06 2.0
2012-05-18 1.0
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2013-01-17 1.0
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2015-04-01 1.0
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2015-02-16 1.8
2014-07-23 1.7
2013-03-21 1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-02-27 1.2
2012-09-21 1.1
2009-11-05 1.0
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2019-01-30 0.1.0.0
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2016-10-02 0.1
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2013-12-14 2.0
2013-11-12 1.0
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2013-03-07 0.1
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2013-08-13 1.0
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2019-01-15 0.1.5
2017-08-09 0.1.4
2017-01-06 0.1.2
2016-09-30 0.1.1
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2011-12-02 1.0
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2010-09-02 1.5
2010-02-03 1.4
2010-02-01 1.3
2009-04-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2008-09-05 1.0
Title: Combining Tree-Boosting with Gaussian Process and Mixed Effects
Models
Description: An R package that allows for combining tree-boosting with Gaussian process and mixed effects models. It also allows for independently doing tree-boosting as well as inference and prediction for Gaussian process and mixed effects models. See <https://github.com/fabsig/GPBoost> for more information on the software and Sigrist (2020) <arXiv:2004.02653> and Sigrist (2021) <arXiv:2105.08966> for more information on the methodology.
Author: Fabio Sigrist [aut, cre],
Benoit Jacob [cph],
Gael Guennebaud [cph],
Nicolas Carre [cph],
Pierre Zoppitelli [cph],
Gauthier Brun [cph],
Jean Ceccato [cph],
Jitse Niesen [cph],
Other authors of Eigen for the included version of Eigen [ctb, cph],
Timot [...truncated...]
Maintainer: Fabio Sigrist <fabiosigrist@gmail.com>
Diff between gpboost versions 0.7.5 dated 2022-05-05 and 0.7.6.2 dated 2022-05-10
gpboost-0.7.5/gpboost/demo/boosting.R |only gpboost-0.7.5/gpboost/demo/classification_non_Gaussian_data.R |only gpboost-0.7.5/gpboost/demo/cross_validation.R |only gpboost-0.7.6.2/gpboost/DESCRIPTION | 8 gpboost-0.7.6.2/gpboost/MD5 | 59 - gpboost-0.7.6.2/gpboost/R/GPModel.R | 148 +- gpboost-0.7.6.2/gpboost/R/gpb.Booster.R | 195 +-- gpboost-0.7.6.2/gpboost/R/gpb.cv.R | 5 gpboost-0.7.6.2/gpboost/R/gpb.train.R | 54 gpboost-0.7.6.2/gpboost/R/gpboost.R | 58 - gpboost-0.7.6.2/gpboost/README.md | 9 gpboost-0.7.6.2/gpboost/configure.ac | 2 gpboost-0.7.6.2/gpboost/demo/00Index | 5 gpboost-0.7.6.2/gpboost/demo/GPBoost_algorithm.R | 553 +++++----- gpboost-0.7.6.2/gpboost/demo/examples_in_R_package_documentation.R | 205 +-- gpboost-0.7.6.2/gpboost/demo/generalized_linear_Gaussian_process_mixed_effects_models.R | 5 gpboost-0.7.6.2/gpboost/man/fit.GPModel.Rd | 22 gpboost-0.7.6.2/gpboost/man/fitGPModel.Rd | 49 gpboost-0.7.6.2/gpboost/man/gpb.load.Rd | 18 gpboost-0.7.6.2/gpboost/man/gpb.save.Rd | 26 gpboost-0.7.6.2/gpboost/man/gpb.train.Rd | 54 gpboost-0.7.6.2/gpboost/man/gpboost.Rd | 57 - gpboost-0.7.6.2/gpboost/man/loadGPModel.Rd | 11 gpboost-0.7.6.2/gpboost/man/predict.GPModel.Rd | 25 gpboost-0.7.6.2/gpboost/man/predict.gpb.Booster.Rd | 101 - gpboost-0.7.6.2/gpboost/man/predict_training_data_random_effects.GPModel.Rd | 6 gpboost-0.7.6.2/gpboost/man/predict_training_data_random_effects.Rd | 6 gpboost-0.7.6.2/gpboost/man/saveGPModel.Rd | 11 gpboost-0.7.6.2/gpboost/man/summary.GPModel.Rd | 10 gpboost-0.7.6.2/gpboost/tests/testthat/test_GPBoost_algorithm.R | 52 gpboost-0.7.6.2/gpboost/tests/testthat/test_GPBoost_algorithm_non_Gaussian_data.R | 98 - gpboost-0.7.6.2/gpboost/tests/testthat/test_Predictor.R | 4 32 files changed, 902 insertions(+), 954 deletions(-)
Title: R Interface to Google Charts
Description: R interface to Google's chart tools, allowing users
to create interactive charts based on data frames. Charts
are displayed locally via the R HTTP help server. A modern
browser with an Internet connection is required. The data
remains local and is not uploaded to Google.
Author: Markus Gesmann [aut, cre],
Diego de Castillo [aut],
Joe Cheng [ctb],
Ashley Baldry [ctb],
Durey Ingenieria [ctb]
Maintainer: Markus Gesmann <markus.gesmann@googlemail.com>
Diff between googleVis versions 0.6.12 dated 2022-04-06 and 0.7.0 dated 2022-05-10
DESCRIPTION | 8 MD5 | 44 - NAMESPACE | 1 NEWS.md | 9 R/gvis.R | 18 R/gvisGantt.R |only R/gvisSankey.R | 4 R/gvisTimeLine.R | 4 README.md | 2 build/googleVis.pdf |binary build/vignette.rds |binary data/Cats.RData |binary demo/googleVis.R | 64 -- inst/doc/googleVis_examples.R | 52 - inst/doc/googleVis_examples.Rmd | 27 inst/doc/googleVis_examples.html | 1185 +++++++++++++++------------------------ inst/doc/googleVis_intro.Rmd | 7 inst/doc/googleVis_intro.html | 596 +++++++++---------- man/gvisGantt.Rd |only man/gvisSankey.Rd | 4 man/gvisTimeline.Rd | 4 vignettes/googleVis.bib | 2 vignettes/googleVis_examples.Rmd | 27 vignettes/googleVis_intro.Rmd | 7 24 files changed, 906 insertions(+), 1159 deletions(-)
Title: Generalized Linear Models with Clustering
Description: Binomial and Poisson regression for clustered data, fixed
and random effects with bootstrapping.
Author: Goeran Brostroem [aut, cre],
Jianming Jin [ctb],
Henrik Holmberg [ctb]
Maintainer: Goeran Brostroem <goran.brostrom@umu.se>
Diff between glmmML versions 1.1.2 dated 2022-04-13 and 1.1.3 dated 2022-05-10
ChangeLog | 5 +++++ DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/glmmML.pdf |binary src/fun.c | 2 ++ 6 files changed, 17 insertions(+), 10 deletions(-)
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the 'randomForest' or
'randomForestSRC' package for survival, regression and classification forests and
'ggplot2' package plotting.
Author: John Ehrlinger <john.ehrlinger@gmail.com>
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 2.1.0 dated 2022-04-26 and 2.2.0 dated 2022-05-10
ggRandomForests-2.1.0/ggRandomForests/R/logit_loess.R |only ggRandomForests-2.1.0/ggRandomForests/R/pbc_data.R |only ggRandomForests-2.1.0/ggRandomForests/data/interaction_Boston.rda |only ggRandomForests-2.1.0/ggRandomForests/data/partial_Boston.rda |only ggRandomForests-2.1.0/ggRandomForests/data/partial_Boston_surf.rda |only ggRandomForests-2.1.0/ggRandomForests/data/partial_coplot_Boston.rda |only ggRandomForests-2.1.0/ggRandomForests/data/partial_coplot_Boston2.rda |only ggRandomForests-2.1.0/ggRandomForests/data/rfsrc_Boston.rda |only ggRandomForests-2.1.0/ggRandomForests/data/varsel_Boston.rda |only ggRandomForests-2.1.0/ggRandomForests/man/logit_loess.Rd |only ggRandomForests-2.1.0/ggRandomForests/man/pbc_data.Rd |only ggRandomForests-2.1.0/ggRandomForests/tests/testthat/Rplots.pdf |only ggRandomForests-2.2.0/ggRandomForests/DESCRIPTION | 17 ggRandomForests-2.2.0/ggRandomForests/MD5 | 228 +-- ggRandomForests-2.2.0/ggRandomForests/NAMESPACE | 7 ggRandomForests-2.2.0/ggRandomForests/NEWS | 9 ggRandomForests-2.2.0/ggRandomForests/R/cache_rfsrc_datasets.R | 747 +++------- ggRandomForests-2.2.0/ggRandomForests/R/calc_roc.R | 316 ++-- ggRandomForests-2.2.0/ggRandomForests/R/combine.gg_partial.R | 127 - ggRandomForests-2.2.0/ggRandomForests/R/gg_error.R | 132 + ggRandomForests-2.2.0/ggRandomForests/R/gg_interaction.R | 111 - ggRandomForests-2.2.0/ggRandomForests/R/gg_minimal_depth.R | 108 - ggRandomForests-2.2.0/ggRandomForests/R/gg_minimal_vimp.R | 118 - ggRandomForests-2.2.0/ggRandomForests/R/gg_partial.R | 213 +- ggRandomForests-2.2.0/ggRandomForests/R/gg_partial_coplot.R | 198 +- ggRandomForests-2.2.0/ggRandomForests/R/gg_rfsrc.R | 455 +++--- ggRandomForests-2.2.0/ggRandomForests/R/gg_roc.R | 116 + ggRandomForests-2.2.0/ggRandomForests/R/gg_survival.R | 78 - ggRandomForests-2.2.0/ggRandomForests/R/gg_variable.R | 248 +-- ggRandomForests-2.2.0/ggRandomForests/R/gg_vimp.R | 330 ++-- ggRandomForests-2.2.0/ggRandomForests/R/help.R | 124 - ggRandomForests-2.2.0/ggRandomForests/R/interaction_data.R | 147 + ggRandomForests-2.2.0/ggRandomForests/R/kaplan.R | 146 + ggRandomForests-2.2.0/ggRandomForests/R/nelson.R | 240 +-- ggRandomForests-2.2.0/ggRandomForests/R/partial_coplot_data.R | 84 - ggRandomForests-2.2.0/ggRandomForests/R/partial_data.R | 107 - ggRandomForests-2.2.0/ggRandomForests/R/partial_surface_data.R | 98 - ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_error.R | 100 - ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_interaction.R | 190 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_minimal_depth.R | 198 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_minimal_vimp.R | 134 + ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_partial.R | 241 +-- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_partial_list.R | 165 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_rfsrc.R | 192 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_roc.R | 153 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_survival.R | 176 +- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_variable.R | 552 ++++--- ggRandomForests-2.2.0/ggRandomForests/R/plot.gg_vimp.R | 138 - ggRandomForests-2.2.0/ggRandomForests/R/print.gg_minimal_depth.R | 47 ggRandomForests-2.2.0/ggRandomForests/R/quantile_pts.R | 82 - ggRandomForests-2.2.0/ggRandomForests/R/rfsrc_data.R | 104 - ggRandomForests-2.2.0/ggRandomForests/R/surface_matrix.gg_partial_coplot.R | 102 - ggRandomForests-2.2.0/ggRandomForests/R/varsel_data.R | 107 - ggRandomForests-2.2.0/ggRandomForests/README.md | 5 ggRandomForests-2.2.0/ggRandomForests/build |only ggRandomForests-2.2.0/ggRandomForests/data/interaction_boston.rda |only ggRandomForests-2.2.0/ggRandomForests/data/interaction_iris.rda |binary ggRandomForests-2.2.0/ggRandomForests/data/partial_boston.rda |only ggRandomForests-2.2.0/ggRandomForests/data/partial_boston_surf.rda |only ggRandomForests-2.2.0/ggRandomForests/data/partial_coplot_boston.rda |only ggRandomForests-2.2.0/ggRandomForests/data/partial_coplot_boston2.rda |only ggRandomForests-2.2.0/ggRandomForests/data/partial_iris.rda |binary ggRandomForests-2.2.0/ggRandomForests/data/rfsrc_boston.rda |only ggRandomForests-2.2.0/ggRandomForests/data/rfsrc_iris.rda |binary ggRandomForests-2.2.0/ggRandomForests/data/varsel_boston.rda |only ggRandomForests-2.2.0/ggRandomForests/data/varsel_iris.rda |binary ggRandomForests-2.2.0/ggRandomForests/inst/doc |only ggRandomForests-2.2.0/ggRandomForests/man/cache_rfsrc_datasets.Rd | 48 ggRandomForests-2.2.0/ggRandomForests/man/calc_auc.Rd | 10 ggRandomForests-2.2.0/ggRandomForests/man/calc_roc.rfsrc.Rd | 38 ggRandomForests-2.2.0/ggRandomForests/man/combine.gg_partial.Rd | 43 ggRandomForests-2.2.0/ggRandomForests/man/ggRandomForests-package.Rd | 111 - ggRandomForests-2.2.0/ggRandomForests/man/gg_error.Rd | 30 ggRandomForests-2.2.0/ggRandomForests/man/gg_interaction.Rd | 35 ggRandomForests-2.2.0/ggRandomForests/man/gg_minimal_depth.Rd | 37 ggRandomForests-2.2.0/ggRandomForests/man/gg_minimal_vimp.Rd | 38 ggRandomForests-2.2.0/ggRandomForests/man/gg_partial.Rd | 68 ggRandomForests-2.2.0/ggRandomForests/man/gg_partial_coplot.rfsrc.Rd | 17 ggRandomForests-2.2.0/ggRandomForests/man/gg_rfsrc.rfsrc.Rd | 21 ggRandomForests-2.2.0/ggRandomForests/man/gg_roc.rfsrc.Rd | 17 ggRandomForests-2.2.0/ggRandomForests/man/gg_survival.Rd | 26 ggRandomForests-2.2.0/ggRandomForests/man/gg_variable.Rd | 69 ggRandomForests-2.2.0/ggRandomForests/man/gg_vimp.Rd | 35 ggRandomForests-2.2.0/ggRandomForests/man/interaction_data.Rd | 153 +- ggRandomForests-2.2.0/ggRandomForests/man/kaplan.Rd | 13 ggRandomForests-2.2.0/ggRandomForests/man/nelson.Rd | 17 ggRandomForests-2.2.0/ggRandomForests/man/partial_coplot_data.Rd | 82 - ggRandomForests-2.2.0/ggRandomForests/man/partial_data.Rd | 109 - ggRandomForests-2.2.0/ggRandomForests/man/partial_surface_data.Rd | 100 - ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_error.Rd | 17 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_interaction.Rd | 18 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_minimal_depth.Rd | 25 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_minimal_vimp.Rd | 19 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_partial.Rd | 47 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_partial_list.Rd | 48 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_rfsrc.Rd | 16 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_roc.Rd | 6 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_survival.Rd | 16 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_variable.Rd | 15 ggRandomForests-2.2.0/ggRandomForests/man/plot.gg_vimp.Rd | 20 ggRandomForests-2.2.0/ggRandomForests/man/print.gg_minimal_depth.Rd | 10 ggRandomForests-2.2.0/ggRandomForests/man/quantile_pts.Rd | 16 ggRandomForests-2.2.0/ggRandomForests/man/rfsrc_data.Rd | 90 - ggRandomForests-2.2.0/ggRandomForests/man/shift.Rd | 9 ggRandomForests-2.2.0/ggRandomForests/man/surface_matrix.Rd | 37 ggRandomForests-2.2.0/ggRandomForests/man/varsel_data.Rd | 109 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_cache_rfsrc_datasets.R | 24 ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_error.R | 134 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_interaction.R | 127 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_minimal_depth.R | 123 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_minimal_vimp.R | 114 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_partial.R | 170 -- ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_partial_coplot.R | 83 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_rfsrc.R | 129 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_roc.R | 116 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_survival.R | 93 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_variable.R | 78 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_gg_vimp.R | 269 ++- ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_lint.R | 7 ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_partial.rfsrc.R | 103 - ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_quantile_pts.R | 28 ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_shift.R | 9 ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_surface_matrix.R | 31 ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_survival_datasets.R |only ggRandomForests-2.2.0/ggRandomForests/vignettes |only 125 files changed, 5476 insertions(+), 4987 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Package for Generalized F-Statistics
Description: Implementation of several generalized F-statistics. The
current version includes a generalized F-statistic based on the
flexible isotonic/monotonic regression or order restricted hypothesis
testing. Based on: Y. Lai (2011) <doi:10.1371/journal.pone.0019754>.
Author: Yinglei Lai [aut, cre]
Maintainer: Yinglei Lai <ylai@gwu.edu>
Diff between GeneF versions 1.0 dated 2007-08-25 and 1.0.1 dated 2022-05-10
DESCRIPTION | 28 ++++-- MD5 |only NAMESPACE |only man/GeneF-package.Rd | 78 +++++++++--------- man/flexorhtest.Rd | 213 +++++++++++++++++++++++++-------------------------- 5 files changed, 164 insertions(+), 155 deletions(-)
Title: Generate and Modify Synthetic Datasets
Description: Set of functions to create datasets using a correlation matrix.
Author: Francis Huang <flh3@hotmail.com>
Maintainer: Francis Huang <flh3@hotmail.com>
Diff between gendata versions 1.1 dated 2015-03-01 and 1.2.0 dated 2022-05-10
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- NAMESPACE | 1 + NEWS.md |only R/dtrans.R | 27 ++++++++++++++------------- R/genmvnorm.R | 54 +++++++++++++++++++++++++++--------------------------- R/recalib.R | 18 +++++++++--------- R/revcode.R | 10 +++++----- README.md |only man/dtrans.Rd | 21 ++++++++++----------- man/genmvnorm.Rd | 2 +- man/recalib.Rd | 9 +++------ 12 files changed, 85 insertions(+), 85 deletions(-)
Title: Datasets for 'gap'
Description: Datasets associated with the 'gap' package. Currently,
it includes an example data for regional association
plot (CDKN), an example data for a genomewide association
meta-analysis (OPG), data in studies of Parkinson's diease (PD),
ALHD2 markers and alcoholism (aldh2), APOE/APOC1 markers
and Schizophrenia (apoeapoc), cystic fibrosis (cf), a
Olink/INF panel (inf1), Manhattan plots with (hr1420, mhtdata)
and without (w4) gene annotations.
Author: Jing Hua Zhao [aut, cre],
Swetlana Herbrandt [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap.datasets versions 0.0.4 dated 2019-06-03 and 0.0.5 dated 2022-05-10
DESCRIPTION | 21 ++++++++++++++------- INDEX |only MD5 | 41 ++++++++++++++++++++++++++++++++++++++--- data/PD.rda |only data/aldh2.rda |only data/apoeapoc.rda |only data/cf.RData |only data/cnv.rda |only data/crohn.RData |only data/datalist | 17 +++++++++++++++++ data/fa.RData |only data/fsnps.RData |only data/hla.rda |only data/inf1.rda |only data/jma.cojo.rda |only data/l51.rda |only data/lukas.rda |only data/mao.RData |only data/meyer.rda |only data/mfblong.rda |only data/nep499.RData |only man/CDKN.Rd | 6 +++--- man/PD.Rd |only man/aldh2.Rd |only man/apoeapoc.Rd |only man/cf.Rd |only man/cnv.Rd |only man/crohn.Rd |only man/fa.Rd |only man/fsnps.Rd |only man/hla.Rd |only man/inf1.Rd |only man/jma.cojo.Rd |only man/l51.Rd |only man/lukas.Rd |only man/mao.Rd |only man/meyer.Rd |only man/mfblong.Rd |only man/nep499.Rd |only 39 files changed, 72 insertions(+), 13 deletions(-)
Title: Fractional Factorial Designs with 2-Level Factors
Description: Regular and non-regular Fractional Factorial 2-level designs
can be created. Furthermore, analysis tools for Fractional
Factorial designs with 2-level factors are offered (main
effects and interaction plots for all factors simultaneously,
cube plot for looking at the simultaneous effects of three
factors, full or half normal plot, alias structure in a more
readable format than with the built-in function alias).
Author: Ulrike Groemping
Maintainer: Ulrike Groemping <ulrike.groemping@bht-berlin.de>
Diff between FrF2 versions 2.2-2 dated 2020-05-30 and 2.2-3 dated 2022-05-10
DESCRIPTION | 17 ++-- MD5 | 35 ++++----- R/DanielPlot.R | 2 R/IAPlot.R | 11 ++ R/MEPlot.R | 14 ++- build |only inst/CITATION | 4 - inst/NEWS | 169 ++++++++++++++++++++++++---------------------- man/CIG.Rd | 10 +- man/CatalogueAccessors.Rd | 8 +- man/FrF2-package.Rd | 4 - man/FrF2.Rd | 17 ++-- man/IAPlot.Rd | 7 + man/block.Rd | 10 +- man/blockpick.Rd | 2 man/compromise.Rd | 10 +- man/estimable.2fis.Rd | 23 +++--- man/godolphin.Rd | 31 +++----- man/pb.Rd | 2 19 files changed, 203 insertions(+), 173 deletions(-)
Title: Force Measurement Analyses
Description: For cleaning and analyses of animal closing force measurements.
'forceR' was initially written and optimized to deal with insect bite force
measurements, but can be used for any time series. Includes a full workflow
to load, plot and crop data, correct amplifier and baseline drifts,
identify individual peak shapes (bites), rescale (normalize) peak curves,
and find best polynomial fits to describe and analyze force curve shapes.
Author: Peter T. Ruehr <peter.ruehr@gmail.com>
Maintainer: Peter T. Ruehr <peter.ruehr@gmail.com>
Diff between forceR versions 1.0.13 dated 2022-05-02 and 1.0.14 dated 2022-05-10
DESCRIPTION | 8 MD5 | 21 NEWS.md |only R/cropping.R | 15 R/time_series_manipulations.R | 36 + README.md | 24 - inst/doc/forceR.R | 194 ++++---- inst/doc/forceR.Rmd | 229 +++++---- inst/doc/forceR.html | 986 ++++++++++++++++++++++-------------------- man/crop_measurement.Rd | 13 man/y_to_force.Rd | 23 vignettes/forceR.Rmd | 229 +++++---- 12 files changed, 998 insertions(+), 780 deletions(-)
Title: Factor Analysis for Multiple Testing (FAMT) : Simultaneous Tests
under Dependence in High-Dimensional Data
Description: The method proposed in this package takes into account the impact of dependence on the multiple testing procedures for high-throughput data as proposed by Friguet et al. (2009). The common information shared by all the variables is modeled by a factor analysis structure. The number of factors considered in the model is chosen to reduce the false discoveries variance in multiple tests. The model parameters are estimated thanks to an EM algorithm. Adjusted tests statistics are derived, as well as the associated p-values. The proportion of true null hypotheses (an important parameter when controlling the false discovery rate) is also estimated from the FAMT model. Graphics are proposed to interpret and describe the factors.
Author: David Causeur, Chloe Friguet, Magalie Houee-Bigot, Maela Kloareg
Maintainer: David Causeur <David.Causeur@agrocampus-ouest.fr>
Diff between FAMT versions 2.5 dated 2013-10-11 and 2.6 dated 2022-05-10
DESCRIPTION | 16 ++++++++-------- MD5 | 8 ++++---- NAMESPACE | 7 ++++++- R/as.FAMTdata.R | 2 +- man/FAMT-package.Rd | 7 +++++-- 5 files changed, 24 insertions(+), 16 deletions(-)
Title: Fair Models in Machine Learning
Description: Fair machine learning regression models which take sensitive attributes into account in
model estimation. Currently implementing Komiyama et al. (2018)
<http://proceedings.mlr.press/v80/komiyama18a/komiyama18a.pdf>, Zafar et al.
(2019) <https://www.jmlr.org/papers/volume20/18-262/18-262.pdf> and my own
approach that uses ridge regression to enforce fairness.
Author: Marco Scutari [aut, cre]
Maintainer: Marco Scutari <scutari@bnlearn.com>
Diff between fairml versions 0.6.2 dated 2022-04-14 and 0.6.3 dated 2022-05-10
Changelog | 8 ++++++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/two-stage-regression.R | 27 +++++++++++++++++++++------ 4 files changed, 36 insertions(+), 13 deletions(-)
Title: Fit, Simulate and Diagnose Exponential-Family Models for
Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGMs). 'ergm' is a part of the Statnet suite of packages for network analysis. See Hunter, Handcock, Butts, Goodreau, and Morris (2008) <doi:10.18637/jss.v024.i03> and Krivitsky, Hunter, Morris, and Klumb (2021) <arXiv:2106.04997>.
Author: Mark S. Handcock [aut],
David R. Hunter [aut],
Carter T. Butts [aut],
Steven M. Goodreau [aut],
Pavel N. Krivitsky [aut, cre] ,
Martina Morris [aut],
Li Wang [ctb],
Kirk Li [ctb],
Skye Bender-deMoll [ctb],
Chad Klumb [ctb],
Michal Bojanowski [ctb] ,
[...truncated...]
Maintainer: Pavel N. Krivitsky <pavel@statnet.org>
Diff between ergm versions 4.1.2 dated 2021-07-27 and 4.2.1 dated 2022-05-10
ergm-4.1.2/ergm/R/ergm-disambiguation.R |only ergm-4.1.2/ergm/build/partial.rdb |only ergm-4.1.2/ergm/man/edges.Rd |only ergm-4.1.2/ergm/man/ergm-constraints.Rd |only ergm-4.1.2/ergm/man/ergm-hints.Rd |only ergm-4.1.2/ergm/man/ergm-proposals.Rd |only ergm-4.1.2/ergm/man/ergm-references.Rd |only ergm-4.1.2/ergm/man/ergm-terms.Rd |only ergm-4.1.2/ergm/man/eut-upgrade.Rd |only ergm-4.1.2/ergm/man/hamming.Rd |only ergm-4.1.2/ergm/tests/constrain_degrees_edges.R |only ergm-4.1.2/ergm/tests/drop_tests.R |only ergm-4.1.2/ergm/tests/ergm_term_doc_test.R |only ergm-4.1.2/ergm/tests/gw_sp_tests.R |only ergm-4.1.2/ergm/tests/hamming_termtests.R |only ergm-4.1.2/ergm/tests/miss_tests.CD.R |only ergm-4.1.2/ergm/tests/miss_tests.R |only ergm-4.1.2/ergm/tests/mple_largenetwork.R |only ergm-4.1.2/ergm/tests/mple_offset.R |only ergm-4.1.2/ergm/tests/nodrop.R |only ergm-4.1.2/ergm/tests/parallel.R |only ergm-4.1.2/ergm/tests/runtime_diags.R |only ergm-4.1.2/ergm/tests/sampson.wrong.RData |only ergm-4.1.2/ergm/tests/simpletests.R |only ergm-4.1.2/ergm/tests/steppingtest.R |only ergm-4.1.2/ergm/tests/termTests.b12nodematch.R |only ergm-4.1.2/ergm/tests/termTests.bipartite.R |only ergm-4.1.2/ergm/tests/termTests.directed.R |only ergm-4.1.2/ergm/tests/termTests.flexible.R |only ergm-4.1.2/ergm/tests/termTests.undirected.R |only ergm-4.1.2/ergm/tests/termTests.valued.R |only ergm-4.1.2/ergm/tests/testgflomiss.R |only ergm-4.1.2/ergm/tests/testgmonkmiss.R |only ergm-4.1.2/ergm/tests/testnet3d.RData |only ergm-4.1.2/ergm/tests/testnet3u.RData |only ergm-4.1.2/ergm/tests/testrank3d.RData |only ergm-4.1.2/ergm/tests/u_function.R |only ergm-4.1.2/ergm/tests/valued_sim.R |only ergm-4.2.1/ergm/DESCRIPTION | 53 ergm-4.2.1/ergm/LICENSE | 2 ergm-4.2.1/ergm/MD5 | 923 ergm-4.2.1/ergm/NAMESPACE | 13 ergm-4.2.1/ergm/R/InitErgmConstraint.R | 265 ergm-4.2.1/ergm/R/InitErgmConstraint.blockdiag.R | 30 ergm-4.2.1/ergm/R/InitErgmConstraint.hints.R | 56 ergm-4.2.1/ergm/R/InitErgmProposal.R | 120 ergm-4.2.1/ergm/R/InitErgmProposal.dyadnoise.R | 15 ergm-4.2.1/ergm/R/InitErgmReference.R | 58 ergm-4.2.1/ergm/R/InitErgmTerm.R | 2676 +- ergm-4.2.1/ergm/R/InitErgmTerm.auxnet.R | 2 ergm-4.2.1/ergm/R/InitErgmTerm.bipartite.R | 98 ergm-4.2.1/ergm/R/InitErgmTerm.bipartite.degree.R | 38 ergm-4.2.1/ergm/R/InitErgmTerm.blockop.R | 16 ergm-4.2.1/ergm/R/InitErgmTerm.coincidence.R | 26 ergm-4.2.1/ergm/R/InitErgmTerm.dgw_sp.R | 151 ergm-4.2.1/ergm/R/InitErgmTerm.extra.R | 19 ergm-4.2.1/ergm/R/InitErgmTerm.indices.R | 2 ergm-4.2.1/ergm/R/InitErgmTerm.interaction.R | 2 ergm-4.2.1/ergm/R/InitErgmTerm.operator.R | 241 ergm-4.2.1/ergm/R/InitErgmTerm.spcache.R | 2 ergm-4.2.1/ergm/R/InitErgmTerm.test.R | 2 ergm-4.2.1/ergm/R/InitErgmTerm.transitiveties.R | 41 ergm-4.2.1/ergm/R/InitWtErgmProposal.R | 44 ergm-4.2.1/ergm/R/InitWtErgmTerm.R | 388 ergm-4.2.1/ergm/R/InitWtErgmTerm.operator.R | 86 ergm-4.2.1/ergm/R/InitWtErgmTerm.test.R | 2 ergm-4.2.1/ergm/R/anova.ergm.R | 2 ergm-4.2.1/ergm/R/anova.ergmlist.R | 2 ergm-4.2.1/ergm/R/approx.hotelling.diff.test.R | 78 ergm-4.2.1/ergm/R/as.network.numeric.R | 2 ergm-4.2.1/ergm/R/build_term_index.R | 359 ergm-4.2.1/ergm/R/check.ErgmTerm.R | 24 ergm-4.2.1/ergm/R/control.ergm.R | 60 ergm-4.2.1/ergm/R/control.ergm.bridge.R | 2 ergm-4.2.1/ergm/R/control.gof.R | 2 ergm-4.2.1/ergm/R/control.logLik.ergm.R | 2 ergm-4.2.1/ergm/R/control.san.R | 2 ergm-4.2.1/ergm/R/control.simulate.R | 14 ergm-4.2.1/ergm/R/data.R | 2 ergm-4.2.1/ergm/R/ergm-defunct.R | 2 ergm-4.2.1/ergm/R/ergm-deprecated.R | 2 ergm-4.2.1/ergm/R/ergm-internal.R | 7 ergm-4.2.1/ergm/R/ergm-options.R | 6 ergm-4.2.1/ergm/R/ergm-package.R | 512 ergm-4.2.1/ergm/R/ergm-terms-index.R |only ergm-4.2.1/ergm/R/ergm.CD.fixed.R | 6 ergm-4.2.1/ergm/R/ergm.Cprepare.R | 2 ergm-4.2.1/ergm/R/ergm.MCMCse.R | 7 ergm-4.2.1/ergm/R/ergm.MCMLE.R | 44 ergm-4.2.1/ergm/R/ergm.R | 26 ergm-4.2.1/ergm/R/ergm.allstats.R | 6 ergm-4.2.1/ergm/R/ergm.auxstorage.R | 2 ergm-4.2.1/ergm/R/ergm.bounddeg.R | 2 ergm-4.2.1/ergm/R/ergm.bridge.R | 67 ergm-4.2.1/ergm/R/ergm.design.R | 2 ergm-4.2.1/ergm/R/ergm.errors.R | 2 ergm-4.2.1/ergm/R/ergm.estimate.R | 14 ergm-4.2.1/ergm/R/ergm.eta.R | 4 ergm-4.2.1/ergm/R/ergm.etagrad.R | 2 ergm-4.2.1/ergm/R/ergm.etagradmult.R | 2 ergm-4.2.1/ergm/R/ergm.etamap.R | 2 ergm-4.2.1/ergm/R/ergm.geodistn.R | 2 ergm-4.2.1/ergm/R/ergm.getCDsample.R | 2 ergm-4.2.1/ergm/R/ergm.getMCMCsample.R | 134 ergm-4.2.1/ergm/R/ergm.getnetwork.R | 2 ergm-4.2.1/ergm/R/ergm.initialfit.R | 2 ergm-4.2.1/ergm/R/ergm.llik.R | 2 ergm-4.2.1/ergm/R/ergm.llik.obs.R | 2 ergm-4.2.1/ergm/R/ergm.logitreg.R | 19 ergm-4.2.1/ergm/R/ergm.mple.R | 38 ergm-4.2.1/ergm/R/ergm.pen.glm.R | 9 ergm-4.2.1/ergm/R/ergm.phase12.R | 2 ergm-4.2.1/ergm/R/ergm.pl.R | 96 ergm-4.2.1/ergm/R/ergm.robmon.R | 4 ergm-4.2.1/ergm/R/ergm.san.R | 10 ergm-4.2.1/ergm/R/ergm.stepping.R | 113 ergm-4.2.1/ergm/R/ergm.stocapprox.R | 2 ergm-4.2.1/ergm/R/ergm.utility.R | 211 ergm-4.2.1/ergm/R/ergmMPLE.R | 62 ergm-4.2.1/ergm/R/ergm_estfun.R | 2 ergm-4.2.1/ergm/R/ergm_keyword.R |only ergm-4.2.1/ergm/R/ergm_model.R | 6 ergm-4.2.1/ergm/R/ergm_model.utils.R | 2 ergm-4.2.1/ergm/R/ergm_proposal.R | 10 ergm-4.2.1/ergm/R/ergm_response.R | 2 ergm-4.2.1/ergm/R/ergm_state.R | 28 ergm-4.2.1/ergm/R/ergmlhs.R | 2 ergm-4.2.1/ergm/R/formula.utils.R | 8 ergm-4.2.1/ergm/R/get.node.attr.R | 8 ergm-4.2.1/ergm/R/godfather.R | 13 ergm-4.2.1/ergm/R/gof.ergm.R | 6 ergm-4.2.1/ergm/R/is.curved.R | 2 ergm-4.2.1/ergm/R/is.dyad.independent.R | 2 ergm-4.2.1/ergm/R/is.inCH.R | 125 ergm-4.2.1/ergm/R/is.valued.R | 2 ergm-4.2.1/ergm/R/logLik.ergm.R | 10 ergm-4.2.1/ergm/R/mcmc.diagnostics.ergm.R | 2 ergm-4.2.1/ergm/R/network.list.R | 2 ergm-4.2.1/ergm/R/network.update.R | 2 ergm-4.2.1/ergm/R/nonidentifiability.R | 2 ergm-4.2.1/ergm/R/nparam.R | 2 ergm-4.2.1/ergm/R/obs.constraints.R | 2 ergm-4.2.1/ergm/R/parallel.utils.R | 84 ergm-4.2.1/ergm/R/param_names.R | 2 ergm-4.2.1/ergm/R/predict.ergm.R | 5 ergm-4.2.1/ergm/R/print.ergm.R | 2 ergm-4.2.1/ergm/R/print.network.list.R | 2 ergm-4.2.1/ergm/R/print.summary.ergm.R | 2 ergm-4.2.1/ergm/R/rank_test.ergm.R | 2 ergm-4.2.1/ergm/R/rlebdm.R | 4 ergm-4.2.1/ergm/R/simulate.ergm.R | 16 ergm-4.2.1/ergm/R/simulate.formula.R | 2 ergm-4.2.1/ergm/R/summary.ergm.R | 20 ergm-4.2.1/ergm/R/summary.ergm_model.R | 2 ergm-4.2.1/ergm/R/summary.network.list.R | 2 ergm-4.2.1/ergm/R/summary.statistics.network.R | 8 ergm-4.2.1/ergm/R/to_ergm_Cdouble.R | 2 ergm-4.2.1/ergm/R/vcov.ergm.R | 4 ergm-4.2.1/ergm/R/wtd.median.R | 2 ergm-4.2.1/ergm/R/zzz.R | 29 ergm-4.2.1/ergm/build/ergm.pdf |binary ergm-4.2.1/ergm/build/vignette.rds |binary ergm-4.2.1/ergm/inst/CITATION | 10 ergm-4.2.1/ergm/inst/NEWS.Rd | 156 ergm-4.2.1/ergm/inst/doc/Network-Callback-API.html | 11 ergm-4.2.1/ergm/inst/doc/Proposal-Lookup-API.html | 1 ergm-4.2.1/ergm/inst/doc/Terms-API.html | 1 ergm-4.2.1/ergm/inst/doc/ergm-term-crossRef.R | 17 ergm-4.2.1/ergm/inst/doc/ergm-term-crossRef.Rmd | 31 ergm-4.2.1/ergm/inst/doc/ergm-term-crossRef.html |12537 ++-------- ergm-4.2.1/ergm/inst/doc/ergm.pdf |binary ergm-4.2.1/ergm/inst/doc/nodal_attributes.html | 7 ergm-4.2.1/ergm/inst/include/MHproposal.h | 2 ergm-4.2.1/ergm/inst/include/changestat.h | 2 ergm-4.2.1/ergm/inst/include/edgelist.h | 2 ergm-4.2.1/ergm/inst/include/edgetree.h | 2 ergm-4.2.1/ergm/inst/include/ergm_BDStratBlocks.h | 2 ergm-4.2.1/ergm/inst/include/ergm_BDStrat_proposals.h | 2 ergm-4.2.1/ergm/inst/include/ergm_MHproposal.h | 2 ergm-4.2.1/ergm/inst/include/ergm_MHproposal_bd.h | 2 ergm-4.2.1/ergm/inst/include/ergm_MHstorage.h | 2 ergm-4.2.1/ergm/inst/include/ergm_Rutil.h | 2 ergm-4.2.1/ergm/inst/include/ergm_block.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestat.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestat_auxnet.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestat_common.do_not_include_directly.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestat_operator.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestats_auxnet.h | 2 ergm-4.2.1/ergm/inst/include/ergm_changestats_operator.h | 2 ergm-4.2.1/ergm/inst/include/ergm_constants.h | 2 ergm-4.2.1/ergm/inst/include/ergm_dyad_hashmap.h | 2 ergm-4.2.1/ergm/inst/include/ergm_dyad_hashmap_utils.h | 2 ergm-4.2.1/ergm/inst/include/ergm_dyadgen.h | 2 ergm-4.2.1/ergm/inst/include/ergm_edgelist.h | 2 ergm-4.2.1/ergm/inst/include/ergm_edgetree.h | 2 ergm-4.2.1/ergm/inst/include/ergm_edgetree_common.do_not_include_directly.h | 2 ergm-4.2.1/ergm/inst/include/ergm_edgetree_inline.do_not_include_directly.h | 2 ergm-4.2.1/ergm/inst/include/ergm_edgetree_types.h | 2 ergm-4.2.1/ergm/inst/include/ergm_etamap.h | 2 ergm-4.2.1/ergm/inst/include/ergm_hash_edgelist.h | 2 ergm-4.2.1/ergm/inst/include/ergm_khash.h | 8 ergm-4.2.1/ergm/inst/include/ergm_model.h | 2 ergm-4.2.1/ergm/inst/include/ergm_nodelist.h | 2 ergm-4.2.1/ergm/inst/include/ergm_rlebdm.h | 2 ergm-4.2.1/ergm/inst/include/ergm_state.h | 2 ergm-4.2.1/ergm/inst/include/ergm_storage.h | 2 ergm-4.2.1/ergm/inst/include/ergm_stubs.c | 2 ergm-4.2.1/ergm/inst/include/ergm_unsorted_edgelist.h | 2 ergm-4.2.1/ergm/inst/include/ergm_util.h | 2 ergm-4.2.1/ergm/inst/include/ergm_weighted_population.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtMHproposal.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtchangestat.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtchangestat_operator.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtchangestats_operator.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtedgetree.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtedgetree_inline.do_not_include_directly.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtmodel.h | 2 ergm-4.2.1/ergm/inst/include/ergm_wtstate.h | 2 ergm-4.2.1/ergm/inst/include/model.h | 2 ergm-4.2.1/ergm/inst/include/wtMHproposal.h | 2 ergm-4.2.1/ergm/inst/include/wtchangestat.h | 2 ergm-4.2.1/ergm/inst/include/wtedgetree.h | 2 ergm-4.2.1/ergm/inst/include/wtmodel.h | 2 ergm-4.2.1/ergm/man/B-ergmTerm.Rd |only ergm-4.2.1/ergm/man/BDStratTNT-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Bernoulli-ergmReference.Rd |only ergm-4.2.1/ergm/man/CondB1Degree-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondB2Degree-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondDegree-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondDegreeDist-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondDegreeMix-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondInDegree-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondInDegreeDist-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondOutDegree-ergmProposal.Rd |only ergm-4.2.1/ergm/man/CondOutDegreeDist-ergmProposal.Rd |only ergm-4.2.1/ergm/man/ConstantEdges-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Curve-ergmTerm.Rd |only ergm-4.2.1/ergm/man/DiscUnif-ergmProposal.Rd |only ergm-4.2.1/ergm/man/DiscUnif-ergmReference.Rd |only ergm-4.2.1/ergm/man/DiscUnif2-ergmProposal.Rd |only ergm-4.2.1/ergm/man/DiscUnifNonObserved-ergmProposal.Rd |only ergm-4.2.1/ergm/man/DistRLE-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Dyads-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/Exp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/F-ergmTerm.Rd |only ergm-4.2.1/ergm/man/HammingConstantEdges-ergmProposal.Rd |only ergm-4.2.1/ergm/man/HammingTNT-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Label-ergmTerm.Rd |only ergm-4.2.1/ergm/man/Log-ergmTerm.Rd |only ergm-4.2.1/ergm/man/NodematchFilter-ergmTerm.Rd |only ergm-4.2.1/ergm/man/Offset-ergmTerm.Rd |only ergm-4.2.1/ergm/man/Prod-ergmTerm.Rd |only ergm-4.2.1/ergm/man/S-ergmTerm.Rd |only ergm-4.2.1/ergm/man/StdNormal-ergmProposal.Rd |only ergm-4.2.1/ergm/man/StdNormal-ergmReference.Rd |only ergm-4.2.1/ergm/man/Sum-operator-ergmTerm.Rd |only ergm-4.2.1/ergm/man/Symmetrize-ergmTerm.Rd |only ergm-4.2.1/ergm/man/TNT-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Unif-ergmProposal.Rd |only ergm-4.2.1/ergm/man/Unif-ergmReference.Rd |only ergm-4.2.1/ergm/man/UnifNonObserved-ergmProposal.Rd |only ergm-4.2.1/ergm/man/absdiff-ergmTerm.Rd |only ergm-4.2.1/ergm/man/absdiffcat-ergmTerm.Rd |only ergm-4.2.1/ergm/man/altkstar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/as.rlebdm.ergm_conlist.Rd | 2 ergm-4.2.1/ergm/man/asymmetric-ergmTerm.Rd |only ergm-4.2.1/ergm/man/atleast-ergmTerm.Rd |only ergm-4.2.1/ergm/man/atmost-ergmTerm.Rd |only ergm-4.2.1/ergm/man/attrcov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1concurrent-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1cov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1degrange-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1degree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1degrees-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/b1dsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1factor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1mindegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1nodematch-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1sociality-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1star-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1starmix-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b1twostar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2concurrent-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2cov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2degrange-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2degree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2degrees-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/b2dsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2factor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2mindegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2nodematch-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2sociality-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2star-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2starmix-ergmTerm.Rd |only ergm-4.2.1/ergm/man/b2twostar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/balance-ergmTerm.Rd |only ergm-4.2.1/ergm/man/bd-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/blockdiag-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/blocks-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/check.ErgmTerm.Rd | 16 ergm-4.2.1/ergm/man/coincidence-ergmTerm.Rd |only ergm-4.2.1/ergm/man/concurrent-ergmTerm.Rd |only ergm-4.2.1/ergm/man/concurrentties-ergmTerm.Rd |only ergm-4.2.1/ergm/man/control.ergm.Rd | 93 ergm-4.2.1/ergm/man/control.simulate.ergm.Rd | 64 ergm-4.2.1/ergm/man/ctriple-ergmTerm.Rd |only ergm-4.2.1/ergm/man/cycle-ergmTerm.Rd |only ergm-4.2.1/ergm/man/cyclicalties-ergmTerm.Rd |only ergm-4.2.1/ergm/man/cyclicalweights-ergmTerm.Rd |only ergm-4.2.1/ergm/man/ddsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degcor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degcrossprod-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degrange-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degree1.5-ergmTerm.Rd |only ergm-4.2.1/ergm/man/degreedist-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/degreedist.Rd | 2 ergm-4.2.1/ergm/man/degrees-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/density-ergmTerm.Rd |only ergm-4.2.1/ergm/man/desp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dgwdsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dgwesp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dgwnsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/diff-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dnsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dot-dyads-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/dsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dyadcov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/dyadnoise-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/dyadnoise-ergmProposal.Rd |only ergm-4.2.1/ergm/man/dyadnoiseTNT-ergmProposal.Rd |only ergm-4.2.1/ergm/man/edgecov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/edges-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/edges-ergmTerm.Rd |only ergm-4.2.1/ergm/man/egocentric-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/equalto-ergmTerm.Rd |only ergm-4.2.1/ergm/man/ergm-deprecated.Rd | 6 ergm-4.2.1/ergm/man/ergm-internal.Rd | 6 ergm-4.2.1/ergm/man/ergm-options.Rd | 4 ergm-4.2.1/ergm/man/ergm-package.Rd | 10 ergm-4.2.1/ergm/man/ergm-parallel.Rd | 2 ergm-4.2.1/ergm/man/ergm.Rd | 22 ergm-4.2.1/ergm/man/ergm.allstats.Rd | 2 ergm-4.2.1/ergm/man/ergm.eta.Rd | 2 ergm-4.2.1/ergm/man/ergm.exact.Rd | 2 ergm-4.2.1/ergm/man/ergm.mple.Rd | 7 ergm-4.2.1/ergm/man/ergmConstraint.Rd |only ergm-4.2.1/ergm/man/ergmHint.Rd |only ergm-4.2.1/ergm/man/ergmKeyword.Rd |only ergm-4.2.1/ergm/man/ergmMPLE.Rd | 10 ergm-4.2.1/ergm/man/ergmProposal.Rd |only ergm-4.2.1/ergm/man/ergmReference.Rd |only ergm-4.2.1/ergm/man/ergmTerm.Rd |only ergm-4.2.1/ergm/man/ergm_GWDECAY.Rd |only ergm-4.2.1/ergm/man/ergm_MCMC_sample.Rd | 11 ergm-4.2.1/ergm/man/ergm_edgecov_args.Rd |only ergm-4.2.1/ergm/man/ergm_keyword.Rd |only ergm-4.2.1/ergm/man/ergm_proposal.Rd | 4 ergm-4.2.1/ergm/man/ergm_proposal_table.Rd | 4 ergm-4.2.1/ergm/man/ergm_state.Rd | 8 ergm-4.2.1/ergm/man/ergm_state_cache.Rd |only ergm-4.2.1/ergm/man/esp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/fix.curved.Rd | 6 ergm-4.2.1/ergm/man/fixallbut-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/fixedas-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/greaterthan-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwb1degree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwb1dsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwb2degree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwb2dsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwdegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwdsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwesp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwidegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwnsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/gwodegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/hamming-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/hamming-ergmTerm.Rd |only ergm-4.2.1/ergm/man/idegrange-ergmTerm.Rd |only ergm-4.2.1/ergm/man/idegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/idegree1.5-ergmTerm.Rd |only ergm-4.2.1/ergm/man/idegreedist-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/idegrees-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/ininterval-ergmTerm.Rd |only ergm-4.2.1/ergm/man/intransitive-ergmTerm.Rd |only ergm-4.2.1/ergm/man/is.inCH.Rd | 59 ergm-4.2.1/ergm/man/isolatededges-ergmTerm.Rd |only ergm-4.2.1/ergm/man/isolates-ergmTerm.Rd |only ergm-4.2.1/ergm/man/istar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/kstar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/localtriangle-ergmTerm.Rd |only ergm-4.2.1/ergm/man/m2star-ergmTerm.Rd |only ergm-4.2.1/ergm/man/macros |only ergm-4.2.1/ergm/man/meandeg-ergmTerm.Rd |only ergm-4.2.1/ergm/man/mm-ergmTerm.Rd |only ergm-4.2.1/ergm/man/mutual-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nearsimmelian-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodecov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodecovar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodefactor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeicov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeicovar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeifactor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodematch-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodemix-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeocov-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeocovar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nodeofactor-ergmTerm.Rd |only ergm-4.2.1/ergm/man/nsp-ergmTerm.Rd |only ergm-4.2.1/ergm/man/observed-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/odegrange-ergmTerm.Rd |only ergm-4.2.1/ergm/man/odegree-ergmTerm.Rd |only ergm-4.2.1/ergm/man/odegree1.5-ergmTerm.Rd |only ergm-4.2.1/ergm/man/odegreedist-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/odegrees-ergmConstraint.Rd |only ergm-4.2.1/ergm/man/opentriad-ergmTerm.Rd |only ergm-4.2.1/ergm/man/ostar-ergmTerm.Rd |only ergm-4.2.1/ergm/man/randomtoggle-ergmProposal.Rd |only ergm-4.2.1/ergm/man/receiver-ergmTerm.Rd |only ergm-4.2.1/ergm/man/san.Rd | 4 ergm-4.2.1/ergm/man/search.ergmConstraints.Rd |only ergm-4.2.1/ergm/man/search.ergmProposals.Rd |only ergm-4.2.1/ergm/man/search.ergmReferences.Rd |only ergm-4.2.1/ergm/man/search.ergmTerms.Rd | 33 ergm-4.2.1/ergm/man/sender-ergmTerm.Rd |only ergm-4.2.1/ergm/man/simmelian-ergmTerm.Rd |only ergm-4.2.1/ergm/man/simmelianties-ergmTerm.Rd |only ergm-4.2.1/ergm/man/simulate.ergm.Rd | 12 ergm-4.2.1/ergm/man/smalldiff-ergmTerm.Rd |only ergm-4.2.1/ergm/man/smallerthan-ergmTerm.Rd |only ergm-4.2.1/ergm/man/sociality-ergmTerm.Rd |only ergm-4.2.1/ergm/man/sparse-ergmHint.Rd |only ergm-4.2.1/ergm/man/strat-ergmHint.Rd |only ergm-4.2.1/ergm/man/sum-ergmTerm.Rd |only ergm-4.2.1/ergm/man/summary.ergm.Rd | 14 ergm-4.2.1/ergm/man/summary.formula.Rd | 4 ergm-4.2.1/ergm/man/summary_formula.Rd | 2 ergm-4.2.1/ergm/man/threetrail-ergmTerm.Rd |only ergm-4.2.1/ergm/man/transitive-ergmTerm.Rd |only ergm-4.2.1/ergm/man/transitiveties-ergmTerm.Rd |only ergm-4.2.1/ergm/man/transitiveweights-ergmTerm.Rd |only ergm-4.2.1/ergm/man/triadcensus-ergmTerm.Rd |only ergm-4.2.1/ergm/man/triangle-ergmTerm.Rd |only ergm-4.2.1/ergm/man/tripercent-ergmTerm.Rd |only ergm-4.2.1/ergm/man/ttriple-ergmTerm.Rd |only ergm-4.2.1/ergm/man/twopath-ergmTerm.Rd |only ergm-4.2.1/ergm/src/CD.c | 2 ergm-4.2.1/ergm/src/CD.c.template.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/CD.h | 2 ergm-4.2.1/ergm/src/CD.h.template.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/MCMC.c | 2 ergm-4.2.1/ergm/src/MCMC.c.template.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/MCMC.h | 2 ergm-4.2.1/ergm/src/MCMC.h.template.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/MHproposal.c | 2 ergm-4.2.1/ergm/src/MHproposal_bd.c | 2 ergm-4.2.1/ergm/src/MHproposals.c | 2 ergm-4.2.1/ergm/src/MHproposals.h | 2 ergm-4.2.1/ergm/src/MHproposals_bipartite.c | 2 ergm-4.2.1/ergm/src/MHproposals_degree.c | 2 ergm-4.2.1/ergm/src/MHproposals_dyadnoise.c | 2 ergm-4.2.1/ergm/src/MPLE.c | 156 ergm-4.2.1/ergm/src/MPLE.h | 42 ergm-4.2.1/ergm/src/SAN.c | 2 ergm-4.2.1/ergm/src/SAN.c.template.do_not_include_directly.h | 40 ergm-4.2.1/ergm/src/SAN.h | 2 ergm-4.2.1/ergm/src/SAN.h.template.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/allstatistics.c | 2 ergm-4.2.1/ergm/src/changestat.c | 2 ergm-4.2.1/ergm/src/changestats.c | 2 ergm-4.2.1/ergm/src/changestats.h | 2 ergm-4.2.1/ergm/src/changestats_auxnet.c | 2 ergm-4.2.1/ergm/src/changestats_auxnetalike.c | 2 ergm-4.2.1/ergm/src/changestats_coincidence.c | 2 ergm-4.2.1/ergm/src/changestats_concurrentties.c | 2 ergm-4.2.1/ergm/src/changestats_dgw_sp.c | 2 ergm-4.2.1/ergm/src/changestats_dgw_sp.h | 2 ergm-4.2.1/ergm/src/changestats_experimental.c | 2 ergm-4.2.1/ergm/src/changestats_experimental.h | 2 ergm-4.2.1/ergm/src/changestats_homoproportion.c | 2 ergm-4.2.1/ergm/src/changestats_indices.c | 2 ergm-4.2.1/ergm/src/changestats_interaction.c | 2 ergm-4.2.1/ergm/src/changestats_internal.c | 2 ergm-4.2.1/ergm/src/changestats_operator.c | 2 ergm-4.2.1/ergm/src/changestats_spcache.c | 2 ergm-4.2.1/ergm/src/changestats_test.c | 2 ergm-4.2.1/ergm/src/edgetree.c | 2 ergm-4.2.1/ergm/src/edgetree_inline.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/ergm_dyad_hashmap_utils.c | 2 ergm-4.2.1/ergm/src/ergm_dyadgen.c | 2 ergm-4.2.1/ergm/src/ergm_omp.c | 2 ergm-4.2.1/ergm/src/ergm_omp.h | 2 ergm-4.2.1/ergm/src/ergm_rlebdm.c | 2 ergm-4.2.1/ergm/src/ergm_state.c | 2 ergm-4.2.1/ergm/src/ergm_type_defs_common.h | 2 ergm-4.2.1/ergm/src/ergm_wtstate.c | 2 ergm-4.2.1/ergm/src/ergm_wttype_defs_common.h | 2 ergm-4.2.1/ergm/src/etamap.c | 2 ergm-4.2.1/ergm/src/geodist.c | 2 ergm-4.2.1/ergm/src/geodist.h | 2 ergm-4.2.1/ergm/src/godfather.c | 2 ergm-4.2.1/ergm/src/init.c | 8 ergm-4.2.1/ergm/src/model.c | 2 ergm-4.2.1/ergm/src/netstats.c | 2 ergm-4.2.1/ergm/src/test_weighted_population.c | 2 ergm-4.2.1/ergm/src/wtCD.c | 2 ergm-4.2.1/ergm/src/wtCD.h | 2 ergm-4.2.1/ergm/src/wtMCMC.c | 2 ergm-4.2.1/ergm/src/wtMCMC.h | 2 ergm-4.2.1/ergm/src/wtMHproposal.c | 2 ergm-4.2.1/ergm/src/wtMHproposals.c | 2 ergm-4.2.1/ergm/src/wtSAN.c | 2 ergm-4.2.1/ergm/src/wtSAN.h | 2 ergm-4.2.1/ergm/src/wtchangestats.c | 2 ergm-4.2.1/ergm/src/wtchangestats.h | 2 ergm-4.2.1/ergm/src/wtchangestats_operator.c | 2 ergm-4.2.1/ergm/src/wtchangestats_operator.h | 2 ergm-4.2.1/ergm/src/wtchangestats_test.c | 2 ergm-4.2.1/ergm/src/wtedgetree.c | 2 ergm-4.2.1/ergm/src/wtedgetree_inline.do_not_include_directly.h | 2 ergm-4.2.1/ergm/src/wtgodfather.c | 2 ergm-4.2.1/ergm/src/wtmodel.c | 2 ergm-4.2.1/ergm/src/wtnetstats.c | 2 ergm-4.2.1/ergm/tests/requireNamespaceTest.R | 19 ergm-4.2.1/ergm/tests/testthat.R | 2 ergm-4.2.1/ergm/tests/testthat/sampson.wrong.RData |only ergm-4.2.1/ergm/tests/testthat/test-C-curved.R | 2 ergm-4.2.1/ergm/tests/testthat/test-Sum.R | 19 ergm-4.2.1/ergm/tests/testthat/test-bd.R | 2 ergm-4.2.1/ergm/tests/testthat/test-bipartite-missing-data.R | 2 ergm-4.2.1/ergm/tests/testthat/test-bridge-target.stats.R | 3 ergm-4.2.1/ergm/tests/testthat/test-c-ergm_model.R | 6 ergm-4.2.1/ergm/tests/testthat/test-checkpointing.R | 25 ergm-4.2.1/ergm/tests/testthat/test-constrain-blockdiag.R | 3 ergm-4.2.1/ergm/tests/testthat/test-constrain-degrees-edges.R |only ergm-4.2.1/ergm/tests/testthat/test-constrain-dind.R | 3 ergm-4.2.1/ergm/tests/testthat/test-constrain-egocentric.R | 3 ergm-4.2.1/ergm/tests/testthat/test-constraints.R | 6 ergm-4.2.1/ergm/tests/testthat/test-drop.R |only ergm-4.2.1/ergm/tests/testthat/test-ergm-godfather.R | 94 ergm-4.2.1/ergm/tests/testthat/test-ergm-san.R | 2 ergm-4.2.1/ergm/tests/testthat/test-ergm-term-doc.R |only ergm-4.2.1/ergm/tests/testthat/test-ergm.bridge.llr.R | 18 ergm-4.2.1/ergm/tests/testthat/test-ergmMPLE.R | 3 ergm-4.2.1/ergm/tests/testthat/test-fix.curved.R | 3 ergm-4.2.1/ergm/tests/testthat/test-gflomiss.R |only ergm-4.2.1/ergm/tests/testthat/test-gmonkmiss.R |only ergm-4.2.1/ergm/tests/testthat/test-gof.R |only ergm-4.2.1/ergm/tests/testthat/test-gw-sp.R |only ergm-4.2.1/ergm/tests/testthat/test-metrics.R | 2 ergm-4.2.1/ergm/tests/testthat/test-miss.CD.R |only ergm-4.2.1/ergm/tests/testthat/test-miss.R |only ergm-4.2.1/ergm/tests/testthat/test-mple-largenetwork.R |only ergm-4.2.1/ergm/tests/testthat/test-mple-offset.R |only ergm-4.2.1/ergm/tests/testthat/test-mple-target.R | 4 ergm-4.2.1/ergm/tests/testthat/test-nodemix.R | 123 ergm-4.2.1/ergm/tests/testthat/test-nodrop.R |only ergm-4.2.1/ergm/tests/testthat/test-nonident-test.R | 10 ergm-4.2.1/ergm/tests/testthat/test-nonunique-names.R | 2 ergm-4.2.1/ergm/tests/testthat/test-offsets.R | 3 ergm-4.2.1/ergm/tests/testthat/test-operators.R | 73 ergm-4.2.1/ergm/tests/testthat/test-parallel.R |only ergm-4.2.1/ergm/tests/testthat/test-predict.ergm.R | 2 ergm-4.2.1/ergm/tests/testthat/test-proposal-bdstrattnt.R | 2 ergm-4.2.1/ergm/tests/testthat/test-runtime-diags.R |only ergm-4.2.1/ergm/tests/testthat/test-scoping.R | 3 ergm-4.2.1/ergm/tests/testthat/test-shrink-into-CH.R |only ergm-4.2.1/ergm/tests/testthat/test-simple.R |only ergm-4.2.1/ergm/tests/testthat/test-simulate-batch.R | 5 ergm-4.2.1/ergm/tests/testthat/test-snctrl.R | 2 ergm-4.2.1/ergm/tests/testthat/test-stocapprox.R | 8 ergm-4.2.1/ergm/tests/testthat/test-target-offset.R | 3 ergm-4.2.1/ergm/tests/testthat/test-term-Offset.R | 3 ergm-4.2.1/ergm/tests/testthat/test-term-attrcov.R | 2 ergm-4.2.1/ergm/tests/testthat/test-term-b12factor.R | 4 ergm-4.2.1/ergm/tests/testthat/test-term-b12nodematch.R |only ergm-4.2.1/ergm/tests/testthat/test-term-bipartite.R |only ergm-4.2.1/ergm/tests/testthat/test-term-directed.R |only ergm-4.2.1/ergm/tests/testthat/test-term-edgecov.R | 2 ergm-4.2.1/ergm/tests/testthat/test-term-errors.R | 2 ergm-4.2.1/ergm/tests/testthat/test-term-flexible.R |only ergm-4.2.1/ergm/tests/testthat/test-term-hamming.R |only ergm-4.2.1/ergm/tests/testthat/test-term-mm.R | 42 ergm-4.2.1/ergm/tests/testthat/test-term-options.R | 18 ergm-4.2.1/ergm/tests/testthat/test-term-undirected.R |only ergm-4.2.1/ergm/tests/testthat/test-term-valued.R |only ergm-4.2.1/ergm/tests/testthat/test-u-function.R |only ergm-4.2.1/ergm/tests/testthat/test-update.network.R | 3 ergm-4.2.1/ergm/tests/testthat/test-valued-sim.R |only ergm-4.2.1/ergm/tests/testthat/test-valued-terms.R | 30 ergm-4.2.1/ergm/tests/testthat/test-weighted-population.R | 2 ergm-4.2.1/ergm/tests/testthat/testnet3d.RData |only ergm-4.2.1/ergm/vignettes/ergm-term-crossRef.Rmd | 31 ergm-4.2.1/ergm/vignettes/old.ergm.Rmd.off |only 594 files changed, 10002 insertions(+), 12059 deletions(-)
Title: Exploratory Graph Analysis – a Framework for Estimating the
Number of Dimensions in Multivariate Data using Network
Psychometrics
Description: Implements the Exploratory Graph Analysis (EGA) framework for dimensionality and psychometric assessment. EGA is part of a new area called network psychometrics that uses undirected network models for the assessment of psychometric properties. EGA estimates the number of dimensions (or factors) using graphical lasso or Triangulated Maximally Filtered Graph (TMFG) and a weighted network community detection algorithm. A bootstrap method for verifying the stability of the dimensions and items in those dimensions is available. The fit of the structure suggested by EGA can be verified using Entropy Fit Indices. A novel approach called Unique Variable Analysis (UVA) can be used to identify and reduce redundant variables in multivariate data. Network loadings, which are roughly equivalent to factor loadings when the data generating model is a factor model, are available. Network scores can also be computed using the network loadings. Dynamic EGA (dynEGA) will estimate dimensions from time series data for individual, group, and sample levels. Golino, H., & Epskamp, S. (2017) <doi:10.1371/journal.pone.0174035>. Golino, H., Shi, D., Christensen, A. P., Garrido, L. E., Nieto, M. D., Sadana, R., & Thiyagarajan, J. A. (2020) <doi:10.31234/osf.io/gzcre>. Christensen, A. P., & Golino, H. (under review) <doi:10.31234/osf.io/hz89e>. Golino, H., Moulder, R. G., Shi, D., Christensen, A. P., Garrido, L. E., Nieto, M. D., Nesselroade, J., Sadana, R., Thiyagarajan, J. A., & Boker, S. M. (2020) <doi:10.31234/osf.io/mtka2>. Christensen, A. P. & Golino, H. (2021) <doi:10.3390/psych3030032>. Christensen, A. P., Garrido, L. E., & Golino, H. (under review) <doi:10.31234/osf.io/4kra2>. Golino, H., Christensen, A. P., Moulder, R. G., Kim, S., & Boker, S. M. (under review) <doi:10.31234/osf.io/tfs7c>.
Author: Hudson Golino [aut, cre] ,
Alexander Christensen [aut] ,
Robert Moulder [ctb] ,
Luis E. Garrido [ctb] ,
Laura Jamison [ctb]
Maintainer: Hudson Golino <hfg9s@virginia.edu>
Diff between EGAnet versions 1.0.0 dated 2021-11-10 and 1.1.0 dated 2022-05-10
EGAnet-1.0.0/EGAnet/R/shinyEGA.R |only EGAnet-1.0.0/EGAnet/data/depression.rda |only EGAnet-1.0.0/EGAnet/data/intelligenceBattery.rda |only EGAnet-1.0.0/EGAnet/data/sim.dynEGA.rda |only EGAnet-1.0.0/EGAnet/data/wmt2.rda |only EGAnet-1.0.0/EGAnet/inst/Shiny |only EGAnet-1.0.0/EGAnet/man/shinyEGA.Rd |only EGAnet-1.1.0/EGAnet/DESCRIPTION | 31 EGAnet-1.1.0/EGAnet/MD5 | 145 EGAnet-1.1.0/EGAnet/NAMESPACE | 14 EGAnet-1.1.0/EGAnet/NEWS | 23 EGAnet-1.1.0/EGAnet/R/EGA.R | 41 EGAnet-1.1.0/EGAnet/R/EGA.estimate.R | 80 EGAnet-1.1.0/EGAnet/R/EGA.fit.R | 337 + EGAnet-1.1.0/EGAnet/R/EGAnet.R | 2 EGAnet-1.1.0/EGAnet/R/LCT.R | 4 EGAnet-1.1.0/EGAnet/R/TMFG.R |only EGAnet-1.1.0/EGAnet/R/UVA.R | 182 EGAnet-1.1.0/EGAnet/R/boot.ergoInfo.R | 64 EGAnet-1.1.0/EGAnet/R/bootEGA.R | 19 EGAnet-1.1.0/EGAnet/R/color_palette_EGA.R | 14 EGAnet-1.1.0/EGAnet/R/compare.EGA.plots.R | 192 EGAnet-1.1.0/EGAnet/R/datasets.R | 72 EGAnet-1.1.0/EGAnet/R/dimensionStability.R | 5 EGAnet-1.1.0/EGAnet/R/dynEGA.R | 2 EGAnet-1.1.0/EGAnet/R/entropyFit.R | 37 EGAnet-1.1.0/EGAnet/R/ergoInfo.R | 261 - EGAnet-1.1.0/EGAnet/R/hierEGA.R |only EGAnet-1.1.0/EGAnet/R/invariance.R |only EGAnet-1.1.0/EGAnet/R/itemStability.R | 639 +-- EGAnet-1.1.0/EGAnet/R/louvain.R |only EGAnet-1.1.0/EGAnet/R/mctest.ergoInfo.R | 103 EGAnet-1.1.0/EGAnet/R/methods.R | 414 +- EGAnet-1.1.0/EGAnet/R/net.loads.R | 35 EGAnet-1.1.0/EGAnet/R/net.scores.R | 2 EGAnet-1.1.0/EGAnet/R/network.descriptives.R | 16 EGAnet-1.1.0/EGAnet/R/plots.R | 343 + EGAnet-1.1.0/EGAnet/R/prime.num.R |only EGAnet-1.1.0/EGAnet/R/prints.R | 82 EGAnet-1.1.0/EGAnet/R/residualEGA.R | 8 EGAnet-1.1.0/EGAnet/R/riEGA.R |only EGAnet-1.1.0/EGAnet/R/simDFM.R | 14 EGAnet-1.1.0/EGAnet/R/tefi.R | 26 EGAnet-1.1.0/EGAnet/R/totalCor.R | 7 EGAnet-1.1.0/EGAnet/R/totalCorMat.R | 7 EGAnet-1.1.0/EGAnet/R/utils-EGAnet.R | 4306 ++++++++++++++------- EGAnet-1.1.0/EGAnet/R/zzz.R | 14 EGAnet-1.1.0/EGAnet/build |only EGAnet-1.1.0/EGAnet/data/boot.wmt.RData |binary EGAnet-1.1.0/EGAnet/data/depression.RData |only EGAnet-1.1.0/EGAnet/data/dnn.weights.RData |binary EGAnet-1.1.0/EGAnet/data/ega.wmt.RData |binary EGAnet-1.1.0/EGAnet/data/intelligenceBattery.RData |only EGAnet-1.1.0/EGAnet/data/optimism.RData |binary EGAnet-1.1.0/EGAnet/data/prime.num.RData |only EGAnet-1.1.0/EGAnet/data/sim.dynEGA.RData |only EGAnet-1.1.0/EGAnet/data/toy.example.RData |binary EGAnet-1.1.0/EGAnet/data/wmt2.RData |only EGAnet-1.1.0/EGAnet/inst/CITATION | 10 EGAnet-1.1.0/EGAnet/inst/EGAnet_hex.png |only EGAnet-1.1.0/EGAnet/inst/doc |only EGAnet-1.1.0/EGAnet/man/EGA.Rd | 8 EGAnet-1.1.0/EGAnet/man/EGA.estimate.Rd | 6 EGAnet-1.1.0/EGAnet/man/EGA.fit.Rd | 44 EGAnet-1.1.0/EGAnet/man/EGAnet-package.Rd | 2 EGAnet-1.1.0/EGAnet/man/TMFG.Rd |only EGAnet-1.1.0/EGAnet/man/UVA.Rd | 10 EGAnet-1.1.0/EGAnet/man/boot.ergoInfo.Rd | 2 EGAnet-1.1.0/EGAnet/man/bootEGA.Rd | 2 EGAnet-1.1.0/EGAnet/man/compare.EGA.plots.Rd | 73 EGAnet-1.1.0/EGAnet/man/dnn.weights.Rd | 14 EGAnet-1.1.0/EGAnet/man/dynEGA.Rd | 2 EGAnet-1.1.0/EGAnet/man/dynEGA.ind.pop.Rd | 2 EGAnet-1.1.0/EGAnet/man/hierEGA.Rd |only EGAnet-1.1.0/EGAnet/man/invariance.Rd |only EGAnet-1.1.0/EGAnet/man/itemStability.Rd | 12 EGAnet-1.1.0/EGAnet/man/louvain.Rd |only EGAnet-1.1.0/EGAnet/man/mctest.ergoInfo.Rd | 2 EGAnet-1.1.0/EGAnet/man/net.loads.Rd | 10 EGAnet-1.1.0/EGAnet/man/net.scores.Rd | 2 EGAnet-1.1.0/EGAnet/man/prime.num.Rd |only EGAnet-1.1.0/EGAnet/man/prints.Rd | 6 EGAnet-1.1.0/EGAnet/man/riEGA.Rd |only EGAnet-1.1.0/EGAnet/man/sim.dynEGA.Rd | 11 EGAnet-1.1.0/EGAnet/man/totalCorMat.Rd | 3 EGAnet-1.1.0/EGAnet/vignettes |only 86 files changed, 5234 insertions(+), 2528 deletions(-)
Title: Elliptic Lambda Distribution and Option Pricing Model
Description: Elliptic lambda distribution and lambda option pricing model
have been evolved into a framework of
stable-law inspired distributions,
such as the extended stable lambda distribution for asset return,
stable count distribution for volatility,
and Lihn-Laplace process as a leptokurtic extension of Wiener process.
This package contains functions for the computation of
density, probability, quantile, random variable, fitting procedures,
option prices, volatility smile. It also comes with sample financial data,
and plotting routines.
Author: Stephen H-T. Lihn [aut, cre]
Maintainer: Stephen H-T. Lihn <stevelihn@gmail.com>
Diff between ecd versions 0.9.2.2 dated 2022-05-02 and 0.9.2.4 dated 2022-05-10
DESCRIPTION | 12 ++++++------ MD5 | 24 ++++++++++++------------ NAMESPACE | 4 ---- NEWS.md | 6 ++++-- R/ecd-mpfr-method.R | 25 ++++++++++--------------- R/ecdattr-enrich-method.R | 2 +- R/ecdb-ecdattr-generic.R | 2 +- R/ecdq-constructor.R | 2 +- R/ecld-constructor.R | 6 +++--- R/ecld.quartic_Qp_atm_attr.R | 2 +- R/lamp-qsl-fit-plot-method.R | 2 +- inst/doc |binary man/ecd.mpfr.Rd | 10 +++++----- 13 files changed, 45 insertions(+), 52 deletions(-)
Title: Data Sets for RuPaul's Drag Race
Description: These are data sets for the hit TV show, RuPaul's Drag Race.
Data right now include episode-level data, contestant-level data, and
episode-contestant-level data. This is a work in progress, and a love letter
of a kind to RuPaul's Drag Race and the performers that have appeared on the show.
This may not be the most productive use of my time, but I have tenure and what
are you going to do about it? I think there is at least some value in this package
if it allows the show's fandom to learn more about the R programming language
around its contents.
Author: Steve Miller [aut, cre]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between dragracer versions 0.1.6 dated 2021-08-17 and 0.1.7 dated 2022-05-10
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- NEWS.md | 5 +++++ R/rd-rpdr_contep.R | 4 ++-- R/rd-rpdr_contestants.R | 4 ++-- R/rd-rpdr_ep.R | 8 +++++--- README.md | 39 +++++++++++++++++++++++---------------- data/rpdr_contep.rda |binary data/rpdr_contestants.rda |binary data/rpdr_ep.rda |binary inst/doc/dragracer-intro.html | 15 ++++++++------- man/rpdr_contep.Rd | 4 ++-- man/rpdr_contestants.Rd | 4 ++-- man/rpdr_ep.Rd | 8 +++++--- 14 files changed, 71 insertions(+), 54 deletions(-)
Title: Tools to Support Relative Importance Analysis
Description: Provides tools that support relative importance analysis focusing
on dominance analysis. Dominance analysis is a methodology for
determining the relative importance of predictors/features/independent
variables (Azen, R., & Budescu, D. V. (2003) <doi:10.1037/1082-989X.8.2.129>;
Groemping, U. (2007) <doi:10.1198/000313007X188252>)
as well as parameter estimates (Luchman, J. N, Lei, X., & Kaplan, S.
(2020) <doi:10.47263/JASEM.4(2)02>).
These tools are intended to extend relative importance analysis to,
effectively, any statistical or machine learning function as defined or
desired by the user-especially those where the user wants to use custom
importance/fit statistic or modeling function.
Author: Joseph Luchman [aut, cre]
Maintainer: Joseph Luchman <jluchman@gmail.com>
Diff between domir versions 0.3.0 dated 2022-02-21 and 0.3.2 dated 2022-05-10
DESCRIPTION | 12 MD5 | 18 NEWS.md | 106 +++-- R/domir-package.r | 2 build/vignette.rds |binary inst/doc/domir_basics.R | 24 - inst/doc/domir_basics.Rmd | 189 ++++----- inst/doc/domir_basics.html | 905 +++++++++++++++++++++++++++++++++++++-------- man/domir-package.Rd | 2 vignettes/domir_basics.Rmd | 189 ++++----- 10 files changed, 1034 insertions(+), 413 deletions(-)
Title: Discriminant Non-Negative Matrix Factorization
Description: Discriminant Non-Negative Matrix Factorization aims to extend the Non-negative Matrix Factorization algorithm in order to extract features that enforce not only the spatial locality, but also the separability between classes in a discriminant manner. It refers to three article, Zafeiriou, Stefanos, et al. "Exploiting discriminant information in nonnegative matrix factorization with application to frontal face verification." Neural Networks, IEEE Transactions on 17.3 (2006): 683-695. Kim, Bo-Kyeong, and Soo-Young Lee. "Spectral Feature Extraction Using dNMF for Emotion Recognition in Vowel Sounds." Neural Information Processing. Springer Berlin Heidelberg, 2013. and Lee, Soo-Young, Hyun-Ah Song, and Shun-ichi Amari. "A new discriminant NMF algorithm and its application to the extraction of subtle emotional differences in speech." Cognitive neurodynamics 6.6 (2012): 525-535.
Author: Zhilong Jia [aut, cre],
Xiang Zhang [aut]
Maintainer: Zhilong Jia <zhilongjia@gmail.com>
Diff between DNMF versions 1.3 dated 2015-06-09 and 1.4.2 dated 2022-05-10
DESCRIPTION | 10 +++++----- MD5 | 23 ++++++++++++----------- NAMESPACE | 5 ++++- NEWS.md | 6 +++++- R/DNMF.R | 3 ++- R/NMFpval.R | 1 + R/ndNMF.R | 1 + R/rnk.R | 3 ++- inst |only man/DNMF.Rd | 40 +++++++++++++++++++++++++--------------- man/NMFpval.Rd | 22 ++++++++++++++-------- man/ndNMF.Rd | 31 ++++++++++++++++++++----------- man/rnk.Rd | 7 +++---- 13 files changed, 94 insertions(+), 58 deletions(-)
Title: Time Series Regression Models with Distributed Lag Models
Description: Provides time series regression models with one predictor using finite distributed lag models, polynomial (Almon) distributed lag models, geometric distributed lag models with Koyck transformation, and autoregressive distributed lag models. It also consists of functions for computation of h-step ahead forecasts from these models. See Demirhan (2020)(<doi:10.1371/journal.pone.0228812>) and Baltagi (2011)(<doi:10.1007/978-3-642-20059-5>) for more information.
Author: Haydar Demirhan [aut, cre, cph]
Maintainer: Haydar Demirhan <haydar.demirhan@rmit.edu.au>
Diff between dLagM versions 1.1.7 dated 2022-02-23 and 1.1.8 dated 2022-05-10
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + NEWS.md | 3 +++ R/ardlBound.R | 15 ++++++++++++++- R/ardlDlmForecast.main.R | 18 ++++++++++-------- R/sdPercentiles.R | 1 + man/dLagM-package.Rd | 4 ++-- 8 files changed, 42 insertions(+), 22 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-04-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-12-18 2.1.2
2013-12-31 2.1.1
2013-11-07 2.1.0
2013-08-15 2.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-01-16 1.2
2011-05-17 1.1
2011-05-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-06-24 1.0-1
2015-05-27 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-12 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-12 1.1
2014-07-09 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-19 0.2.2
2018-11-20 0.2.1
2017-09-09 0.2
2017-08-01 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-05-07 2.0
2011-08-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-11-17 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-08 0.3.4
2016-11-29 0.3.2
2016-11-03 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-02-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-07-30 0.99.4
2013-07-26 0.99.3
2013-07-03 0.99.2
2013-03-29 0.99.1
2013-03-10 0.99
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2007-10-09 0.1-3
2007-01-09 0.0-6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-15 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-01-14 1.2
2014-12-09 1.1
2014-12-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-23 1.1
2014-04-29 1.0
2013-12-02 0.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-02 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2010-11-13 1.1
2010-11-03 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-07-02 1.1
Title: Differential Identification using Mixture Ensemble
Description: A robust identification of differential binding sites method for analyzing ChIP-seq (Chromatin Immunoprecipitation Sequencing)
comparing two samples that considers an ensemble of finite mixture models combined with a local false discovery rate (fdr)
allowing for flexible modeling of data. Methods for Differential Identification using Mixture Ensemble (DIME) is described in:
Taslim et al., (2011) <doi:10.1093/bioinformatics/btr165>.
Author: Cenny Taslim <taslim.2@osu.edu>, with contributions from Dustin Potter, Abbasali Khalili and Shili Lin <shili@stat.osu.edu>.
Maintainer: Cenny Taslim <taslim.2@osu.edu>
Diff between DIME versions 1.2 dated 2013-12-09 and 1.3.0 dated 2022-05-10
DESCRIPTION | 15 +++++++++------ MD5 | 5 +++-- NAMESPACE | 19 +++++++++++++++++-- src/registerDynamicSymbol.c |only 4 files changed, 29 insertions(+), 10 deletions(-)
Title: Differential Gene Expression (DGE) Analysis Utility Toolkit
Description: Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE)
analysis (Law (2015) <doi:10.12688/f1000research.9005.3>). The tools include both analysis
work-flow and utility functions: mapping/unit conversion, count normalization, accounting for
unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that
provides a flexible container to manage and annotate Differential Gene Expression analysis results.
Author: John Thompson [aut],
Connie Brett [aut, cre],
Isaac Neuhaus [aut],
Ryan Thompson [aut]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between DGEobj.utils versions 1.0.4 dated 2021-10-27 and 1.0.5 dated 2022-05-10
DESCRIPTION | 8 MD5 | 39 +-- NEWS.md | 3 R/lowIntFilter.R | 2 R/runContrasts.R | 2 R/runVoom.R | 2 README.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/DGEobj.utils_Workflow.html | 422 ++++++++++++++++++++++++++++++------ man/lowIntFilter.Rd | 2 man/runContrasts.Rd | 2 man/runVoom.Rd | 2 tests/testthat/Rplots.pdf |only tests/testthat/setup.R | 2 tests/testthat/teardown.R | 4 tests/testthat/test_extractCol.R | 1 tests/testthat/test_lowIntFilter.R | 2 tests/testthat/test_runEdgeRNorm.R | 3 tests/testthat/test_runPower.R | 5 tests/testthat/test_runVoom.R | 2 21 files changed, 417 insertions(+), 90 deletions(-)
Title: Differential Gene Expression (DGE) Analysis Results Data Object
Description: Provides a flexible container to manage and annotate Differential Gene
Expression (DGE) analysis results (Smythe et. al (2015) <doi:10.1093/nar/gkv007>).
The DGEobj has data slots for row (gene), col (samples), assays (matrix n-rows
by m-samples dimensions) and metadata (not keyed to row, col, or assays).
A set of accessory functions to deposit, query and retrieve subsets of a data
workflow has been provided. Attributes are used to capture metadata such as
species and gene model, including reproducibility information such that a 3rd
party can access a DGEobj history to see how each data object was created or
modified. Since the DGEobj is customizable and extensible it is not limited
to RNA-seq analysis types of workflows -- it can accommodate nearly any data
analysis workflow that starts from a matrix of assays (rows) by samples (columns).
Author: John Thompson [aut],
Connie Brett [aut, cre],
Isaac Neuhaus [aut],
Ryan Thompson [aut]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between DGEobj versions 1.1.0 dated 2022-03-25 and 1.1.1 dated 2022-05-10
DESCRIPTION | 6 MD5 | 58 +- NEWS.md | 5 R/addItem.R | 3 R/attributes.R | 2 R/reset.R | 2 R/subset.R | 2 R/utils.R | 4 inst/doc/DGEobj_Overview.Rmd | 2 inst/doc/DGEobj_Overview.html | 942 ++++++++++++++++++++++++++++++------- man/addItems.Rd | 3 man/inventory.Rd | 2 man/print.DGEobj.Rd | 2 man/resetDGEobj.Rd | 2 man/showAttributes.Rd | 2 man/subset.DGEobj.Rd | 2 tests/testthat/setup.R | 109 ++-- tests/testthat/teardown.R | 6 tests/testthat/test_addItem.R | 2 tests/testthat/test_annotate.R | 2 tests/testthat/test_attributes.R | 2 tests/testthat/test_get.R | 2 tests/testthat/test_init.R | 2 tests/testthat/test_reset.R | 1 tests/testthat/test_rmItem.R | 2 tests/testthat/test_subset.R | 2 tests/testthat/test_types.R | 2 tests/testthat/test_utils.R | 2 vignettes/DGEobj_Overview.Rmd | 2 vignettes/DGEobj_Overview.Rmd.orig | 2 30 files changed, 904 insertions(+), 273 deletions(-)
Title: Interactive Functions to be Used as Shortcuts in 'RStudio'
Description: 'RStudio' as of recently offers the option to define addins and assign shortcuts to them. This package contains addins for a few most frequently used functions in a data scientist's (at least mine) daily work (like str(), example(), plot(), head(), view(), Desc()). Most of these functions will use the current selection in the editor window and send the specific command to the console while instantly executing it. Assigning shortcuts to these addins will save you quite a few keystrokes.
Author: Andri Signorell
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescToolsAddIns versions 1.9 dated 2021-03-19 and 1.10 dated 2022-05-10
DESCRIPTION | 9 +-- MD5 | 16 +++--- NAMESPACE | 3 + NEWS | 18 +++++++ R/AddIns.R | 114 +++++++++++++++++++++++++++++++++++++++++++++++- R/Dialogs.R | 18 +++++++ R/WdBookmarks.R | 3 + inst/rstudio/addins.dcf | 30 ++++++++++++ man/DescToolsAddIns.Rd | 10 +++- 9 files changed, 203 insertions(+), 18 deletions(-)
More information about DescToolsAddIns at CRAN
Permanent link
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in absence of convincing alternatives). The 'BigCamelCase' style was consequently applied to functions borrowed from contributed R packages as well.
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico C [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.44 dated 2021-11-23 and 0.99.45 dated 2022-05-10
DESCRIPTION | 11 - MD5 | 61 +++---- NAMESPACE | 16 +- NEWS | 46 +++++ R/Desc.R | 3 R/DescTools.r | 332 +++++++++++++++++++++++++++++++++--------- R/Imputation.R | 4 R/StatsAndCIs.r | 266 ++++++++++++++++++++++++--------- R/Tables.r | 13 + R/Tests.r | 227 +++++++++++++++++++++------- build/vignette.rds |binary man/Atkinson.Rd | 9 - man/BinomCI.Rd | 6 man/BoxedText.Rd | 5 man/CochranArmitageTest.Rd | 9 - man/CohenKappa.Rd | 9 - man/DateFunctions.Rd | 3 man/DrawBand.Rd | 2 man/Gini.Rd | 2 man/Gmean.Rd | 45 ++++- man/HuberM.Rd | 2 man/JonckheereTerpstraTest.Rd | 26 ++- man/KnnImputation.Rd | 4 man/PlotCandlestick.Rd | 11 + man/PlotCorr.Rd | 22 ++ man/Quantile.Rd | 23 +- man/RevCode.Rd | 3 man/Skew.Rd | 6 man/SplitToDummy.Rd |only man/TTestA.Rd | 7 man/rSum21.Rd | 5 tests/misc.R | 2 32 files changed, 870 insertions(+), 310 deletions(-)
Title: Quantitative Support of Decision Making under Uncertainty
Description: Supporting the quantitative analysis of binary welfare based
decision making processes using Monte Carlo simulations. Decision support
is given on two levels: (i) The actual decision level is to choose between
two alternatives under probabilistic uncertainty. This package calculates
the optimal decision based on maximizing expected welfare. (ii) The meta
decision level is to allocate resources to reduce the uncertainty in the
underlying decision problem, i.e to increase the current information to
improve the actual decision making process. This problem is dealt with
using the Value of Information Analysis. The Expected Value of
Information for arbitrary prospective estimates can be calculated as
well as Individual Expected Value of Perfect Information.
The probabilistic calculations are done via Monte Carlo
simulations. This Monte Carlo functionality can be used on its own.
Author: Eike Luedeling [cre, aut] ,
Lutz Goehring [aut] ,
Katja Schiffers [aut] ,
Cory Whitney [aut] ,
Eduardo Fernandez [aut]
Maintainer: Eike Luedeling <eike@eikeluedeling.com>
Diff between decisionSupport versions 1.110 dated 2022-02-18 and 1.111 dated 2022-05-10
DESCRIPTION | 8 +- MD5 | 20 ++--- R/compound_figure.R | 2 R/decisionSupport-package.R | 2 R/eviSimulation.R | 6 - R/random.R | 22 +---- build/partial.rdb |binary inst/doc/example_decision_function.html | 21 +++-- inst/doc/wildfire_example.html | 119 +++++++++++++++----------------- man/decisionSupport-package.Rd | 2 man/random.Rd | 22 +---- 11 files changed, 101 insertions(+), 123 deletions(-)
More information about decisionSupport at CRAN
Permanent link
Title: Clustering and Classification with the Contaminated Normal
Description: Fits mixtures of multivariate contaminated normal distributions
(with eigen-decomposed scale matrices) via the expectation conditional-
maximization algorithm under a clustering or classification paradigm
Methods are described in Antonio Punzo, Angelo Mazza, and Paul D McNicholas (2018) <doi:10.18637/jss.v085.i10>.
Author: Antonio Punzo, Angelo Mazza, Paul D. McNicholas
Maintainer: Angelo Mazza <a.mazza@unict.it>
Diff between ContaminatedMixt versions 1.3.6 dated 2021-11-15 and 1.3.7 dated 2022-05-10
DESCRIPTION | 8 ++-- MD5 | 4 +- src/mixture.c | 116 ++++++++++++++++++++++++++++++---------------------------- 3 files changed, 66 insertions(+), 62 deletions(-)
More information about ContaminatedMixt at CRAN
Permanent link
Title: Clinical Pharmacokinetics Toolkit
Description: Calculates equations commonly used in clinical
pharmacokinetics and clinical pharmacology, such as equations
for dose individualization, compartmental pharmacokinetics,
drug exposure, anthropomorphic calculations, clinical
chemistry, and conversion of common clinical parameters. Where
possible and relevant, it provides multiple published and
peer-reviewed equations within the respective R function.
Author: Ron Keizer [aut],
Jasmine Hughes [aut],
Dominic Tong [aut],
Kara Woo [aut, cre],
InsightRX [cph, fnd]
Maintainer: Kara Woo <kara@insight-rx.com>
Diff between clinPK versions 0.9.0 dated 2017-06-19 and 0.11.1 dated 2022-05-10
clinPK-0.11.1/clinPK/DESCRIPTION | 37 clinPK-0.11.1/clinPK/LICENSE | 4 clinPK-0.11.1/clinPK/MD5 | 272 ++- clinPK-0.11.1/clinPK/NAMESPACE | 20 clinPK-0.11.1/clinPK/NEWS.md |only clinPK-0.11.1/clinPK/R/absolute2relative.R |only clinPK-0.11.1/clinPK/R/accumulation_ratio.R |only clinPK-0.11.1/clinPK/R/calc_abw.R | 2 clinPK-0.11.1/clinPK/R/calc_aki_stage.R |only clinPK-0.11.1/clinPK/R/calc_baseline_scr.R |only clinPK-0.11.1/clinPK/R/calc_bmi.R | 3 clinPK-0.11.1/clinPK/R/calc_bsa.R | 63 clinPK-0.11.1/clinPK/R/calc_creat.R | 2 clinPK-0.11.1/clinPK/R/calc_dosing_weight.R |only clinPK-0.11.1/clinPK/R/calc_egfr.R | 806 ++++++---- clinPK-0.11.1/clinPK/R/calc_ffm.R | 230 ++ clinPK-0.11.1/clinPK/R/calc_ibw.R | 155 + clinPK-0.11.1/clinPK/R/calc_kel_double_tdm.R |only clinPK-0.11.1/clinPK/R/calc_kel_single_tdm.R | 6 clinPK-0.11.1/clinPK/R/calc_kgfr.R |only clinPK-0.11.1/clinPK/R/calc_lbw.R | 5 clinPK-0.11.1/clinPK/R/check_covs_available.R |only clinPK-0.11.1/clinPK/R/clinPK-package.R | 1 clinPK-0.11.1/clinPK/R/convert_creat_unit.R | 9 clinPK-0.11.1/clinPK/R/convert_flow_unit.R |only clinPK-0.11.1/clinPK/R/egfr_cov_reqs.R |only clinPK-0.11.1/clinPK/R/find_nearest_dose.R | 27 clinPK-0.11.1/clinPK/R/fraction_of_ss.R |only clinPK-0.11.1/clinPK/R/metric_conversion.R | 20 clinPK-0.11.1/clinPK/R/misc.R | 4 clinPK-0.11.1/clinPK/R/nca.R | 208 ++ clinPK-0.11.1/clinPK/R/nca_trapezoid.R |only clinPK-0.11.1/clinPK/R/pct_bmi_for_age.R | 8 clinPK-0.11.1/clinPK/R/pct_for_age_generic.R | 64 clinPK-0.11.1/clinPK/R/pct_height_for_age.R | 15 clinPK-0.11.1/clinPK/R/pct_weight_for_age.R | 15 clinPK-0.11.1/clinPK/R/pk_1cmt_inf_dose_for_range.R |only clinPK-0.11.1/clinPK/R/pk_1cmt_t12.R | 4 clinPK-0.11.1/clinPK/R/pk_2cmt_bolus.R | 4 clinPK-0.11.1/clinPK/R/pk_2cmt_bolus_cmax_ss.R | 2 clinPK-0.11.1/clinPK/R/pk_2cmt_bolus_cmin_ss.R | 2 clinPK-0.11.1/clinPK/R/pk_2cmt_bolus_ss.R | 3 clinPK-0.11.1/clinPK/R/pk_2cmt_inf.R | 4 clinPK-0.11.1/clinPK/R/pk_2cmt_inf_cmax_ss.R | 2 clinPK-0.11.1/clinPK/R/pk_2cmt_inf_cmin_ss.R |only clinPK-0.11.1/clinPK/R/pk_2cmt_inf_ss.R | 4 clinPK-0.11.1/clinPK/R/pk_2cmt_t12.R | 29 clinPK-0.11.1/clinPK/R/pk_2cmt_t12_interval.R | 10 clinPK-0.11.1/clinPK/R/print.nca_output.R |only clinPK-0.11.1/clinPK/R/read_who_table.R | 61 clinPK-0.11.1/clinPK/R/relative2absolute.R |only clinPK-0.11.1/clinPK/R/time_to_ss.R |only clinPK-0.11.1/clinPK/R/utils.R |only clinPK-0.11.1/clinPK/R/valid_units.R |only clinPK-0.11.1/clinPK/R/weight2kg.R | 13 clinPK-0.11.1/clinPK/README.md | 22 clinPK-0.11.1/clinPK/man/absolute2relative_bsa.Rd |only clinPK-0.11.1/clinPK/man/accumulation_ratio.Rd |only clinPK-0.11.1/clinPK/man/calc_abw.Rd | 4 clinPK-0.11.1/clinPK/man/calc_aki_stage.Rd |only clinPK-0.11.1/clinPK/man/calc_baseline_scr.Rd |only clinPK-0.11.1/clinPK/man/calc_bmi.Rd | 3 clinPK-0.11.1/clinPK/man/calc_bsa.Rd | 13 clinPK-0.11.1/clinPK/man/calc_dosing_weight.Rd |only clinPK-0.11.1/clinPK/man/calc_egfr.Rd | 170 +- clinPK-0.11.1/clinPK/man/calc_egfr_cystatin.Rd | 8 clinPK-0.11.1/clinPK/man/calc_ffm.Rd | 52 clinPK-0.11.1/clinPK/man/calc_ibw.Rd | 31 clinPK-0.11.1/clinPK/man/calc_kel_double_tdm.Rd |only clinPK-0.11.1/clinPK/man/calc_kel_single_tdm.Rd | 15 clinPK-0.11.1/clinPK/man/calc_kgfr.Rd |only clinPK-0.11.1/clinPK/man/calc_lbw.Rd | 17 clinPK-0.11.1/clinPK/man/check_covs_available.Rd |only clinPK-0.11.1/clinPK/man/conc2mol.Rd | 3 clinPK-0.11.1/clinPK/man/convert_flow_unit.Rd |only clinPK-0.11.1/clinPK/man/egfr_cov_reqs.Rd |only clinPK-0.11.1/clinPK/man/find_factor.Rd |only clinPK-0.11.1/clinPK/man/find_nearest_interval.Rd | 7 clinPK-0.11.1/clinPK/man/fraction_of_ss.Rd |only clinPK-0.11.1/clinPK/man/grapes-greater-than-equals-grapes.Rd |only clinPK-0.11.1/clinPK/man/grapes-less-than-equals-grapes.Rd |only clinPK-0.11.1/clinPK/man/ibw_devine.Rd |only clinPK-0.11.1/clinPK/man/ibw_standard.Rd |only clinPK-0.11.1/clinPK/man/is.nil.Rd | 2 clinPK-0.11.1/clinPK/man/kdigo_stage.Rd |only clinPK-0.11.1/clinPK/man/kg2oz.Rd |only clinPK-0.11.1/clinPK/man/mol2conc.Rd | 3 clinPK-0.11.1/clinPK/man/nca.Rd | 69 clinPK-0.11.1/clinPK/man/nca_trapezoid.Rd |only clinPK-0.11.1/clinPK/man/oz2kg.Rd |only clinPK-0.11.1/clinPK/man/pct_bmi_for_age.Rd | 11 clinPK-0.11.1/clinPK/man/pct_for_age_generic.Rd | 9 clinPK-0.11.1/clinPK/man/pct_height_for_age.Rd | 10 clinPK-0.11.1/clinPK/man/pct_weight_for_age.Rd | 10 clinPK-0.11.1/clinPK/man/pk_1cmt_bolus.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_bolus_cmax_ss.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_bolus_cmin_ss.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_bolus_ss.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_inf.Rd | 11 clinPK-0.11.1/clinPK/man/pk_1cmt_inf_cmin_ss.Rd | 10 clinPK-0.11.1/clinPK/man/pk_1cmt_inf_dose_for_range.Rd |only clinPK-0.11.1/clinPK/man/pk_1cmt_inf_dose_from_cmax.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_inf_dose_from_cmin.Rd | 3 clinPK-0.11.1/clinPK/man/pk_1cmt_inf_ss.Rd | 11 clinPK-0.11.1/clinPK/man/pk_1cmt_oral.Rd | 12 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus.Rd | 16 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus_cmax_ss.Rd | 11 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus_cmin_ss.Rd | 11 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus_dose_from_cmax.Rd | 10 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus_dose_from_cmin.Rd | 10 clinPK-0.11.1/clinPK/man/pk_2cmt_bolus_ss.Rd | 12 clinPK-0.11.1/clinPK/man/pk_2cmt_inf.Rd | 17 clinPK-0.11.1/clinPK/man/pk_2cmt_inf_cmax_ss.Rd | 12 clinPK-0.11.1/clinPK/man/pk_2cmt_inf_cmin_ss.Rd | 14 clinPK-0.11.1/clinPK/man/pk_2cmt_inf_dose_from_cmax.Rd | 11 clinPK-0.11.1/clinPK/man/pk_2cmt_inf_dose_from_cmin.Rd | 11 clinPK-0.11.1/clinPK/man/pk_2cmt_inf_ss.Rd | 17 clinPK-0.11.1/clinPK/man/pk_2cmt_t12.Rd | 2 clinPK-0.11.1/clinPK/man/pk_2cmt_t12_interval.Rd | 3 clinPK-0.11.1/clinPK/man/print.nca_output.Rd |only clinPK-0.11.1/clinPK/man/read_who_table.Rd | 23 clinPK-0.11.1/clinPK/man/relative2absolute_bsa.Rd |only clinPK-0.11.1/clinPK/man/remove_lt_gt.Rd |only clinPK-0.11.1/clinPK/man/time_to_ss.Rd |only clinPK-0.11.1/clinPK/man/valid_units.Rd |only clinPK-0.11.1/clinPK/man/weight2kg.Rd | 2 clinPK-0.11.1/clinPK/tests/testthat |only clinPK-0.11.1/clinPK/tests/testthat.R |only clinPK-0.9.0/clinPK/R/pk_2cmt_inf_cmin.ss.R |only clinPK-0.9.0/clinPK/tests/calc_amts_for_conc.R |only clinPK-0.9.0/clinPK/tests/calc_egfr_cystatin.R |only clinPK-0.9.0/clinPK/tests/tests.R |only 132 files changed, 1967 insertions(+), 850 deletions(-)
Title: Permutation Test for Some Positive and Many Zero Responses
Description: Calculates permutation tests that can be powerful for comparing two groups with some positive but many zero responses (see Follmann, Fay, and Proschan <DOI:10.1111/j.1541-0420.2008.01131.x>).
Author: Michael P. Fay
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between choplump versions 1.0-0.4 dated 2014-11-24 and 1.1.1 dated 2022-05-10
CHANGELOG | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 3 +++ build/vignette.rds |binary inst/doc/choplump.pdf |binary inst/doc/choplumpValidation.pdf |binary man/choplump-package.Rd | 8 ++++---- man/choplump.Rd | 2 +- 9 files changed, 28 insertions(+), 19 deletions(-)
Title: Antarctic Spatial Data Manipulation
Description: Loads and creates spatial data, including layers and tools that are relevant
to the activities of the Commission for the Conservation of Antarctic Marine Living
Resources. Provides two categories of functions: load functions and create functions.
Load functions are used to import existing spatial layers from the online CCAMLR GIS
such as the ASD boundaries. Create functions are used to create layers from user data
such as polygons and grids.
Author: Stephane Thanassekos [aut, cre],
Keith Reid [aut],
Lucy Robinson [aut],
Michael D. Sumner [ctb],
Roger Bivand [ctb]
Maintainer: Stephane Thanassekos <stephane.thanassekos@ccamlr.org>
Diff between CCAMLRGIS versions 3.2.0 dated 2021-09-08 and 4.0.0 dated 2022-05-10
DESCRIPTION | 15 MD5 | 142 ++--- NAMESPACE | 43 - NEWS.md | 22 R/CCAMLRGIS.R | 22 R/CCAMLRGIS_DataDescription.R | 81 +-- R/Clip2Coast.R | 34 - R/Pies.R | 198 +++---- R/add_Cscale.R | 116 +--- R/add_RefGrid.R | 133 ++--- R/add_buffer.R | 20 R/add_col.R | 30 - R/add_labels.R | 38 - R/assign_areas.r | 61 +- R/cGrid.r | 143 ++--- R/cLines.R | 39 - R/cPoints.R | 6 R/cPolys.R | 45 - R/create.R | 452 ++++++++--------- R/get_C_intersection.R |only R/get_depths.R | 195 +------ R/load.R | 137 ++--- R/project_data.r | 30 - R/seabed_area.R | 84 +-- README.md | 1088 ++++++++++++++++++++++++++++++------------ build/vignette.rds |binary data/Coast.RData |binary data/Labels.RData |binary data/SmallBathy.RData |binary inst/doc/CCAMLRGIS.Rmd | 2 inst/doc/CCAMLRGIS.html | 7 man/CCAMLRGIS.Rd | 11 man/CCAMLRp.Rd | 6 man/Clip2Coast.Rd | 18 man/Coast.Rd | 12 man/Depth_cols.Rd | 4 man/Depth_cols2.Rd | 4 man/Depth_cuts.Rd | 2 man/Depth_cuts2.Rd | 4 man/GridData.Rd | 4 man/Labels.Rd | 10 man/LineData.Rd | 4 man/PieData.Rd | 6 man/PieData2.Rd | 6 man/PointData.Rd | 6 man/PolyData.Rd | 6 man/SmallBathy.Rd | 7 man/add_Cscale.Rd | 70 +- man/add_PieLegend.Rd | 52 +- man/add_RefGrid.Rd | 31 - man/add_col.Rd | 26 - man/add_labels.Rd | 29 - man/assign_areas.Rd | 22 man/create_Lines.Rd | 59 -- man/create_Pies.Rd | 56 +- man/create_Points.Rd | 48 - man/create_PolyGrids.Rd | 54 -- man/create_Polys.Rd | 61 -- man/create_Stations.Rd | 129 ++-- man/get_C_intersection.Rd |only man/get_depths.Rd | 55 -- man/load_ASDs.Rd | 9 man/load_Bathy.Rd | 25 man/load_Coastline.Rd | 9 man/load_EEZs.Rd | 9 man/load_MAs.Rd | 9 man/load_MPAs.Rd | 9 man/load_RBs.Rd | 9 man/load_SSMUs.Rd | 9 man/load_SSRUs.Rd | 9 man/project_data.Rd | 16 man/seabed_area.Rd | 27 - vignettes/CCAMLRGIS.Rmd | 2 73 files changed, 2207 insertions(+), 1920 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.10 dated 2021-09-27 and 0.3.11 dated 2022-05-10
DESCRIPTION | 6 MD5 | 22 +- NEWS.md | 6 R/cansim.R | 43 +++- R/cansim_helpers.R | 53 +++++ R/cansim_sql.R | 109 +++++++---- R/cansim_tables_list.R | 2 R/cansim_vectors.R | 7 README.md | 10 - build/vignette.rds |binary inst/doc/cansim.html | 301 +++++++++++++++++++++++++++---- inst/doc/working_with_large_tables.html | 309 ++++++++++++++++++++++++++++---- 12 files changed, 726 insertions(+), 142 deletions(-)
Title: Blood Pressure Analysis in R
Description: A comprehensive package to aid in the analysis of blood pressure data of all forms by providing both descriptive and visualization tools for researchers.
Author: John Schwenck [aut, cre],
Irina Gaynanova [aut]
Maintainer: John Schwenck <jschwenck12@gmail.com>
Diff between bp versions 2.0.1 dated 2021-12-07 and 2.1.0 dated 2022-05-10
DESCRIPTION | 6 +-- MD5 | 78 ++++++++++++++++++++++---------------------- NAMESPACE | 3 - NEWS.md | 8 ++++ R/arv.R | 3 + R/bp_arv.R | 40 ++++++++++++---------- R/bp_center.R | 33 +++++++++++------- R/bp_cv.R | 34 +++++++++++-------- R/bp_mag.R | 34 +++++++++++-------- R/bp_report.R | 7 ++- R/bp_stats.R | 34 ++++++++++--------- R/bp_sv.R | 31 ++++++++++------- R/bp_tables.R | 33 +++++++++--------- R/bp_visuals_hist.R | 17 ++++++--- R/bp_visuals_scatter.R | 3 + R/cv.R | 4 +- R/data_process.R | 7 --- R/helper_functions.R | 8 ++++ R/sv.R | 4 +- build/partial.rdb |binary inst/doc/bp.R | 10 ++--- inst/doc/bp.Rmd | 10 ++--- inst/doc/bp.html | 10 ++--- man/arv.Rd | 2 + man/bp_arv.Rd | 12 +++--- man/bp_center.Rd | 14 +++---- man/bp_cv.Rd | 14 +++---- man/bp_hist.Rd | 7 +++ man/bp_mag.Rd | 14 +++---- man/bp_report.Rd | 5 ++ man/bp_stats.Rd | 14 +++---- man/bp_sv.Rd | 10 ++--- man/bp_tables.Rd | 9 ++--- man/create_grps.Rd | 1 man/cv.Rd | 2 + man/path_check.Rd | 2 + man/stage_check.Rd | 1 man/subject_subset_check.Rd | 1 man/sv.Rd | 2 + vignettes/bp.Rmd | 10 ++--- 40 files changed, 305 insertions(+), 232 deletions(-)
Title: Model Consistent Lasso Estimation Through the Bootstrap
Description: Implements the bolasso algorithm for consistent variable selection
and estimation accuracy. Includes support for many parallel backends via the
future package. For details see: Bach (2008),
'Bolasso: model consistent Lasso estimation through the bootstrap',
<arXiv:0804.1302>.
Author: Daniel Molitor [aut, cre]
Maintainer: Daniel Molitor <molitdj97@gmail.com>
Diff between bolasso versions 0.1.0 dated 2022-01-04 and 0.2.0 dated 2022-05-10
DESCRIPTION | 8 - MD5 | 31 ++-- NEWS.md |only R/bolasso.R | 6 R/methods.R | 230 ++++++++++++++++++------------------- R/utils.R | 200 ++++++++++++++++---------------- README.md | 14 -- build/partial.rdb |binary inst/REFERENCES.bib | 28 ++-- man/bolasso.Rd | 220 +++++++++++++++++------------------ tests/testthat.R | 8 - tests/testthat/test-main.R | 4 tests/testthat/test-model-matrix.R | 66 +++++----- tests/testthat/test-tidy.R | 16 +- tests/testthat/test-translate.R | 102 ++++++++-------- tests/testthat/test-utils.R | 62 ++++----- tests/testthat/test-validation.R | 44 +++---- 17 files changed, 520 insertions(+), 519 deletions(-)
Title: Biological Analysis and Visualization of Weather Radar Data
Description: Extract, visualize and summarize aerial movements of birds and
insects from weather radar data. See <doi:10.1111/ecog.04028>
for a software paper describing package and methodologies.
Author: Adriaan M. Dokter [aut, cre] ,
Peter Desmet [aut] ,
Bart Hoekstra [ctb] ,
Bart Kranstauber [ctb] ,
Hidde Leijnse [ctb] ,
Cecilia Nilsson [ctb] ,
Nicolas Noe [ctb] ,
Raphael Nussbaumer [ctb] ,
Jurriaan Spaaks [ctb],
Stijn Van Hoey [aut] ,
Lourens Veen [...truncated...]
Maintainer: Adriaan M. Dokter <amd427@cornell.edu>
Diff between bioRad versions 0.5.2 dated 2020-05-11 and 0.6.0 dated 2022-05-10
bioRad-0.5.2/bioRad/data/datalist |only bioRad-0.6.0/bioRad/DESCRIPTION | 40 bioRad-0.6.0/bioRad/MD5 | 299 ++-- bioRad-0.6.0/bioRad/NAMESPACE | 46 bioRad-0.6.0/bioRad/NEWS.md | 129 +- bioRad-0.6.0/bioRad/R/apply_mistnet.R | 63 - bioRad-0.6.0/bioRad/R/as.data.frame.R | 55 bioRad-0.6.0/bioRad/R/attribute_table.R |only bioRad-0.6.0/bioRad/R/beam.R | 41 bioRad-0.6.0/bioRad/R/bind_into_vpts.R | 76 + bioRad-0.6.0/bioRad/R/bioRad-deprecated.R | 548 -------- bioRad-0.6.0/bioRad/R/bioRad.R | 7 bioRad-0.6.0/bioRad/R/calculate_param.R | 46 bioRad-0.6.0/bioRad/R/calculate_vp.R | 673 ++++++---- bioRad-0.6.0/bioRad/R/check_night.R | 14 bioRad-0.6.0/bioRad/R/color_scale.R | 18 bioRad-0.6.0/bioRad/R/composite_ppi.R | 153 +- bioRad-0.6.0/bioRad/R/convert_legacy.R | 16 bioRad-0.6.0/bioRad/R/data.R | 15 bioRad-0.6.0/bioRad/R/dbz_eta.R | 6 bioRad-0.6.0/bioRad/R/docker.R | 4 bioRad-0.6.0/bioRad/R/download_basemap.R | 7 bioRad-0.6.0/bioRad/R/download_pvolfiles.R |only bioRad-0.6.0/bioRad/R/download_vpfiles.R | 23 bioRad-0.6.0/bioRad/R/doy_noy.R | 36 bioRad-0.6.0/bioRad/R/filter_vpts.R | 6 bioRad-0.6.0/bioRad/R/get_elevation_angles.R | 9 bioRad-0.6.0/bioRad/R/get_param.R | 18 bioRad-0.6.0/bioRad/R/get_quantity.R | 31 bioRad-0.6.0/bioRad/R/get_scan.R | 40 bioRad-0.6.0/bioRad/R/hooks.R | 1 bioRad-0.6.0/bioRad/R/integrate_profile.R | 345 +++-- bioRad-0.6.0/bioRad/R/integrate_to_ppi.R | 4 bioRad-0.6.0/bioRad/R/iris.R |only bioRad-0.6.0/bioRad/R/map.R | 2 bioRad-0.6.0/bioRad/R/nexrad_odim.R | 44 bioRad-0.6.0/bioRad/R/operators.R |only bioRad-0.6.0/bioRad/R/param.R | 9 bioRad-0.6.0/bioRad/R/plot.ppi.R | 10 bioRad-0.6.0/bioRad/R/plot.scan.R | 14 bioRad-0.6.0/bioRad/R/plot.vpi.R | 22 bioRad-0.6.0/bioRad/R/plot.vpts.R | 187 ++- bioRad-0.6.0/bioRad/R/ppi.R | 14 bioRad-0.6.0/bioRad/R/project_as_ppi.R | 15 bioRad-0.6.0/bioRad/R/pvol.R | 4 bioRad-0.6.0/bioRad/R/pvolfile.R | 107 - 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Title: General Likelihood Exploration
Description: Provides functions for Maximum Likelihood
Estimation, Markov Chain Monte Carlo, finding confidence
intervals. The implementation is heavily based on the
original Fortran source code translated to R.
Author: Georg Luebeck [aut] ,
Rafael Meza [aut, cre] ,
Alexander Gaenko [ctb]
Maintainer: Rafael Meza <rmeza@umich.edu>
Diff between Bhat versions 0.9-10 dated 2013-01-16 and 0.9-12 dated 2022-05-10
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Title: Bayesian Beta Regression
Description: Provides a class of Bayesian beta regression models for the analysis of continuous data with support restricted to an unknown finite support. The response variable is modeled using a four-parameter beta distribution with the mean or mode parameter depending linearly on covariates through a link function. When the response support is known to be (0,1), the above class of models reduce to traditional (0,1) supported beta regression models. Model choice is carried out via the logarithm of the pseudo marginal likelihood (LPML), the deviance information criterion (DIC), and the Watanabe-Akaike information criterion (WAIC). See Zhou and Huang (2022) <doi:10.1016/j.csda.2021.107345>.
Author: Haiming Zhou [aut, cre, cph],
Xianzheng Huang [aut]
Maintainer: Haiming Zhou <haiming2019@gmail.com>
Diff between betaBayes versions 1.0 dated 2021-06-08 and 1.0.1 dated 2022-05-10
betaBayes-1.0.1/betaBayes/DESCRIPTION | 16 betaBayes-1.0.1/betaBayes/MD5 | 11 betaBayes-1.0.1/betaBayes/inst/CITATION | 12 betaBayes-1.0.1/betaBayes/man/beta4reg.Rd | 381 +++++++++----------- betaBayes-1.0.1/betaBayes/man/cox.snell.beta4reg.Rd | 2 betaBayes-1.0.1/betaBayes/man/predictl.beta4reg.Rd | 68 +-- betaBayes-1.0/betaBayes/README.md |only 7 files changed, 245 insertions(+), 245 deletions(-)
Title: Multivariate Conditional Volatility Modelling and Forecasting
Description: Methods and tools for estimating, simulating and forecasting of so-called BEKK-models (named after Baba, Engle, Kraft and Kroner) based on the fast Berndt–Hall–Hall–Hausman (BHHH) algorithm described in Hafner and Herwartz (2008) <doi:10.1007/s00184-007-0130-y>.
Author: Markus Fuelle [aut],
Helmut Herwartz [aut],
Alexander Lange [aut, cre]
Maintainer: Alexander Lange <alexander.lange@uni-goettingen.de>
Diff between BEKKs versions 1.2.0 dated 2022-05-02 and 1.2.1 dated 2022-05-10
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/VaR.R | 8 ++++---- R/backtest.R | 4 ++-- build/BEKKs.pdf |binary 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Bioequivalence Study Data Analysis
Description: Analyze bioequivalence study data with industrial strength. Sample size could be determined for various crossover designs, such as 2x2 design, 2x4 design, 4x4 design, Balaam design, Two-sequence dual design, and William design.
Reference: Chow SC, Liu JP. Design and Analysis of Bioavailability and Bioequivalence Studies. 3rd ed. (2009, ISBN:978-1-58488-668-6).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between BE versions 0.2.0 dated 2022-04-01 and 0.2.1 dated 2022-05-10
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- R/powmse.R | 2 +- R/scaledBound.R | 4 ++-- R/ssscv.R | 12 ++++++++++-- inst/NEWS.Rd | 10 ++++++++-- inst/doc/BE-manual.pdf |binary man/scaledBound.Rd | 8 ++++---- man/ssscv.Rd | 11 +++++++---- 9 files changed, 43 insertions(+), 26 deletions(-)
Title: Tools for Bayesian Analyses
Description: Provides tools for conducting Bayesian analyses. The package contains
functions for creating a wide range of prior distribution objects, mixing posterior
samples from 'JAGS' and 'Stan' models, plotting posterior distributions, and etc...
The tools for working with prior distribution span from visualization, generating 'JAGS'
and 'bridgesampling' syntax to basic functions such as rng, quantile, and distribution functions.
Author: Frantisek Bartos [aut, cre]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between BayesTools versions 0.2.8 dated 2022-04-20 and 0.2.10 dated 2022-05-10
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Title: Render Barcode Distribution Plots
Description: The function \code{barcode()}
produces a histogram-like plot of a distribution that shows
granularity in the data.
Author: John W. Emerson and Walton A. Green and John A. Hartigan
Maintainer: John W. Emerson <john.emerson@yale.edu>
Diff between barcode versions 1.1 dated 2012-02-20 and 1.3.0 dated 2022-05-10
DESCRIPTION | 15 ++-- MD5 | 6 - NAMESPACE | 3 R/barcode.R | 204 ++++++++++++++++++++++++++++++------------------------------ 4 files changed, 116 insertions(+), 112 deletions(-)
Title: Applied Statistical Time Series Analysis
Description: Data sets and scripts to accompany Time Series Analysis and Its Applications: With R Examples (4th ed), by R.H. Shumway and D.S. Stoffer. Springer Texts in Statistics, 2017, <DOI:10.1007/978-3-319-52452-8>, and Time Series: A Data Analysis Approach Using R. Chapman-Hall, 2019, <DOI:10.1201/9780429273285>.
Author: David Stoffer [aut, cre], Nicky Poison [ctb, mus, spy]
Maintainer: David Stoffer <stoffer@pitt.edu>
Diff between astsa versions 1.14 dated 2021-09-02 and 1.15 dated 2022-05-10
DESCRIPTION | 13 +++++---- MD5 | 69 ++++++++++++++++++++++++++++----------------------- NAMESPACE | 2 - R/arma.spec.R | 23 ++++++++++------- R/detrend.R |only R/matrixpwr.R | 2 - R/spec.ic.r | 40 ++++++++++++++++------------- R/specenv.R | 14 +++++----- R/trend.R |only R/tsplot.R | 2 - R/zzz.R | 4 +- README.md |only data/sleep1.rda |only data/sleep2.rda |only man/Grid.Rd | 14 +++++----- man/Hare.Rd | 11 ++++---- man/Lynx.Rd | 8 ++--- man/acf1.Rd | 14 +++++----- man/acf2.Rd | 12 ++++---- man/arma.spec.Rd | 18 +++++++------ man/astsa-package.Rd | 7 ++--- man/detrend.Rd |only man/djia.Rd | 11 +++----- man/dna2vector.Rd | 39 +++++++++++++++------------- man/fmri.Rd | 10 +++---- man/gas.Rd | 6 ++-- man/globtemp.Rd | 8 ++--- man/globtempl.Rd | 14 +++++----- man/gtemp.Rd | 6 ++-- man/gtemp2.Rd | 6 ++-- man/gtemp_land.Rd | 8 ++--- man/gtemp_ocean.Rd | 6 ++-- man/lap.Rd | 2 - man/matrixpwr.Rd | 10 +++---- man/sleep1.Rd |only man/sleep2.Rd |only man/specenv.Rd | 39 +++++++++++++++++++--------- man/ssm.Rd | 14 +++++----- man/trend.Rd |only man/tsplot.Rd | 3 +- 40 files changed, 237 insertions(+), 198 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut, cre],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [ctb] ,
Jeffrey Wong [ctb [...truncated...]
Maintainer: Neal Richardson <neal@ursalabs.org>
Diff between arrow versions 7.0.0 dated 2022-02-10 and 8.0.0 dated 2022-05-10
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