Sun, 15 May 2022

Package rmangal updated to version 2.1.1 with previous version 2.1.0 dated 2021-11-24

Title: 'Mangal' Client
Description: An interface to the 'Mangal' database - a collection of ecological networks. This package includes functions to work with the 'Mangal RESTful API' methods (<https://mangal-interactions.github.io/mangal-api/>).
Author: Steve Vissault [aut, ctb] , Kevin Cazelles [aut, cre] , Gabriel Bergeron [aut, ctb], Benjamin Mercier [aut, ctb], Clement Violet [aut, ctb], Dominique Gravel [aut], Timothee Poisot [aut], Thomas Lin Pedersen [rev] , Anna Willoughby [rev]
Maintainer: Kevin Cazelles <kevin.cazelles@gmail.com>

Diff between rmangal versions 2.1.0 dated 2021-11-24 and 2.1.1 dated 2022-05-15

 rmangal-2.1.0/rmangal/tests/fixtures/get_collection_errors.yml       |only
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 rmangal-2.1.1/rmangal/NEWS.md                                        |   11 
 rmangal-2.1.1/rmangal/R/as.igraph.R                                  |    9 
 rmangal-2.1.1/rmangal/R/cache.R                                      |   11 
 rmangal-2.1.1/rmangal/R/combine_mgNetworks.R                         |    8 
 rmangal-2.1.1/rmangal/R/get_citations.R                              |    4 
 rmangal-2.1.1/rmangal/R/get_collection.R                             |    6 
 rmangal-2.1.1/rmangal/R/get_network_by_id.R                          |   12 
 rmangal-2.1.1/rmangal/R/zzz.R                                        |   11 
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 rmangal-2.1.1/rmangal/tests/testthat/test-get_collection.R           |    5 
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 39 files changed, 1421 insertions(+), 2525 deletions(-)

More information about rmangal at CRAN
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Package LSDsensitivity updated to version 1.2.1 with previous version 1.2.0 dated 2022-02-28

Title: Sensitivity Analysis Tools for LSD Simulations
Description: Tools for sensitivity analysis of LSD simulation models. Reads object-oriented data produced by LSD simulation models and performs screening and global sensitivity analysis (Sobol decomposition method, Saltelli et al. (2008) ISBN:9780470725177). A Kriging or polynomial meta-model (Kleijnen (2009) <doi:10.1016/j.ejor.2007.10.013>) is estimated using the simulation data to provide the data required by the Sobol decomposition. LSD (Laboratory for Simulation Development) is free software developed by Marco Valente and Marcelo C. Pereira (documentation and downloads available at <https://www.labsimdev.org/>).
Author: Marcelo C. Pereira [aut, cre]
Maintainer: Marcelo C. Pereira <mcper@unicamp.br>

Diff between LSDsensitivity versions 1.2.0 dated 2022-02-28 and 1.2.1 dated 2022-05-15

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 LSDsensitivity-1.2.1/LSDsensitivity/R/morris_ee.R                               |   30 +
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More information about LSDsensitivity at CRAN
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Package onlineBcp updated to version 0.1.7 with previous version 0.1.6 dated 2022-05-04

Title: Online Bayesian Methods for Change Point Analysis
Description: It implements the online Bayesian methods for change point analysis. It can also perform missing data imputation with methods from 'VIM'. The reference is Yigiter A, Chen J, An L, Danacioglu N (2015) <doi:10.1080/02664763.2014.1001330>. The link to the package is <https://CRAN.R-project.org/package=onlineBcp>.
Author: Hongyan Xu [cre, aut], Ayten Yigiter [aut], Jie Chen [aut]
Maintainer: Hongyan Xu <hxu@augusta.edu>

Diff between onlineBcp versions 0.1.6 dated 2022-05-04 and 0.1.7 dated 2022-05-15

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 5 files changed, 22 insertions(+), 13 deletions(-)

More information about onlineBcp at CRAN
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Package cohorts updated to version 1.0.1 with previous version 1.0.0 dated 2021-07-08

Title: Cohort Analysis Made Easy
Description: Functions to simplify the process of preparing event and transaction for cohort analysis.
Author: Peer Christensen [aut, cre]
Maintainer: Peer Christensen <hr.pchristensen@gmail.com>

Diff between cohorts versions 1.0.0 dated 2021-07-08 and 1.0.1 dated 2022-05-15

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 MD5                                      |   14 +--
 NEWS.md                                  |    6 +
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More information about cohorts at CRAN
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Package adegenet updated to version 2.1.6 with previous version 2.1.5 dated 2021-10-09

Title: Exploratory Analysis of Genetic and Genomic Data
Description: Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
Author: Thibaut Jombart [aut] , Zhian N. Kamvar [aut, cre] , Caitlin Collins [ctb], Roman Lustrik [ctb], Marie-Pauline Beugin [ctb], Brian J. Knaus [ctb], Peter Solymos [ctb], Vladimir Mikryukov [ctb], Klaus Schliep [ctb], Tiago Maie [ctb], Libor Morkovsky [ [...truncated...]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>

Diff between adegenet versions 2.1.5 dated 2021-10-09 and 2.1.6 dated 2022-05-15

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 18 files changed, 56 insertions(+), 28 deletions(-)

More information about adegenet at CRAN
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Package L2DensityGoFtest updated to version 0.5.0 with previous version 0.4.0 dated 2022-01-07

Title: Density Goodness-of-Fit Test
Description: Provides functions for the implementation of a density goodness-of-fit test, based on piecewise approximation of the L2 distance.
Author: Dimitrios Bagkavos [aut, cre]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>

Diff between L2DensityGoFtest versions 0.4.0 dated 2022-01-07 and 0.5.0 dated 2022-05-15

 DESCRIPTION             |    8 ++++----
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 10 files changed, 34 insertions(+), 55 deletions(-)

More information about L2DensityGoFtest at CRAN
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Package mlr3pipelines updated to version 0.4.1 with previous version 0.4.0 dated 2021-11-15

Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse set of pipelining operators ('PipeOps') that can be composed into graphs. Operations exist for data preprocessing, model fitting, and ensemble learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre], Florian Pfisterer [aut] , Lennart Schneider [aut] , Bernd Bischl [aut] , Michel Lang [aut] , Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>

Diff between mlr3pipelines versions 0.4.0 dated 2021-11-15 and 0.4.1 dated 2022-05-15

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Permanent link

Package MatrixExtra updated to version 0.1.10 with previous version 0.1.9-1 dated 2021-12-18

Title: Extra Methods for Sparse Matrices
Description: Extends sparse matrix and vector classes from the 'Matrix' package by providing: (a) Methods and operators that work natively on CSR formats (compressed sparse row, a.k.a. 'RsparseMatrix') such as slicing/sub-setting, assignment, rbind(), mathematical operators for CSR and COO such as addition ("+") or sqrt(), and methods such as diag(); (b) Multi-threaded matrix multiplication and cross-product for many <sparse, dense> types, including the 'float32' type from 'float'; (c) Coercion methods between pairs of classes which are not present in 'Matrix', such as 'dgCMatrix' -> 'ngRMatrix', as well as convenience conversion functions; (d) Utility functions for sparse matrices such as sorting the indices or removing zero-valued entries; (e) Fast transposes that work by outputting in the opposite storage format; (f) Faster replacements for many 'Matrix' methods for all sparse types, such as slicing and elementwise multiplication. (g) Convenience functions for sparse objects, such as 'mapSparse' or a shorter 'show' method.
Author: David Cortes [aut, cre, cph], Dmitry Selivanov [cph], Thibaut Goetghebuer-Planchon [cph] , Martin Maechler [cph] , Robert Gentleman [cph] , Ross Ihaka [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>

Diff between MatrixExtra versions 0.1.9-1 dated 2021-12-18 and 0.1.10 dated 2022-05-15

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Package whitebox updated to version 2.1.4 with previous version 2.1.2 dated 2022-03-21

Title: 'WhiteboxTools' R Frontend
Description: An R frontend for the 'WhiteboxTools' library, which is an advanced geospatial data analysis platform developed by Prof. John Lindsay at the University of Guelph's Geomorphometry and Hydrogeomatics Research Group. 'WhiteboxTools' can be used to perform common geographical information systems (GIS) analysis operations, such as cost-distance analysis, distance buffering, and raster reclassification. Remote sensing and image processing tasks include image enhancement (e.g. panchromatic sharpening, contrast adjustments), image mosaicing, numerous filtering operations, simple classification (k-means), and common image transformations. 'WhiteboxTools' also contains advanced tooling for spatial hydrological analysis (e.g. flow-accumulation, watershed delineation, stream network analysis, sink removal), terrain analysis (e.g. common terrain indices such as slope, curvatures, wetness index, hillshading; hypsometric analysis; multi-scale topographic position analysis), and LiDAR data processing. Suggested citation: Lindsay (2016) <doi:10.1016/j.cageo.2016.07.003>.
Author: Qiusheng Wu [aut], Andrew Brown [ctb, cre]
Maintainer: Andrew Brown <brown.andrewg@gmail.com>

Diff between whitebox versions 2.1.2 dated 2022-03-21 and 2.1.4 dated 2022-05-15

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Package RcppArmadillo updated to version 0.11.1.1.0 with previous version 0.11.0.0.0 dated 2022-04-04

Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Description: 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with LAPACK and ATLAS libraries. The 'RcppArmadillo' package includes the header files from the templated 'Armadillo' library. Thus users do not need to install 'Armadillo' itself in order to use 'RcppArmadillo'. From release 7.800.0 on, 'Armadillo' is licensed under Apache License 2; previous releases were under licensed as MPL 2.0 from version 3.800.0 onwards and LGPL-3 prior to that; 'RcppArmadillo' (the 'Rcpp' bindings/bridge to Armadillo) is licensed under the GNU GPL version 2 or later, as is the rest of 'Rcpp'. Armadillo requires a C++11 compiler.
Author: Dirk Eddelbuettel, Romain Francois, Doug Bates, Binxiang Ni, and Conrad Sanderson
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RcppArmadillo versions 0.11.0.0.0 dated 2022-04-04 and 0.11.1.1.0 dated 2022-05-15

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Permanent link

Package marginaleffects (with last version 0.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-03-27 0.4.1
2022-03-13 0.4.0
2022-03-03 0.3.4
2022-01-26 0.3.3
2022-01-18 0.3.2
2022-01-09 0.3.1
2022-01-08 0.3.0
2021-10-18 0.2.0
2021-09-29 0.1.0

Permanent link
Package attachment updated to version 0.2.5 with previous version 0.2.4 dated 2021-11-16

Title: Deal with Dependencies
Description: Tools to help manage dependencies during package development. This can retrieve all dependencies that are used in R files in the "R" directory, in Rmd files in "vignettes" directory and in 'roxygen2' documentation of functions. There is a function to update the Description file of your package and a function to create a file with the R commands to install all dependencies of your package. All functions to retrieve dependencies of R scripts and Rmd files can be used independently of a package development.
Author: Sebastien Rochette [cre, aut] , Vincent Guyader [aut] , ThinkR [cph, fnd]
Maintainer: Sebastien Rochette <sebastien@thinkr.fr>

Diff between attachment versions 0.2.4 dated 2021-11-16 and 0.2.5 dated 2022-05-15

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Package PASWR updated to version 1.3 with previous version 1.1 dated 2009-11-25

Title: Probability and Statistics with R
Description: Functions and data sets for the text Probability and Statistics with R.
Author: Alan T. Arnholt [aut, cre]
Maintainer: Alan T. Arnholt <arnholtat@appstate.edu>

Diff between PASWR versions 1.1 dated 2009-11-25 and 1.3 dated 2022-05-15

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 man/vit2005.Rd        |  134 +++++-----
 man/wheatUSA2004.Rd   |   63 ++--
 man/wilcoxE.test.Rd   |  164 ++++++------
 man/z.test.Rd         |  245 +++++++++----------
 man/zsum.test.Rd      |  261 +++++++++-----------
 121 files changed, 5754 insertions(+), 4968 deletions(-)

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Package gsignal updated to version 0.3-5 with previous version 0.3-4 dated 2022-04-05

Title: Signal Processing
Description: R implementation of the 'Octave' package 'signal', containing a variety of signal processing tools, such as signal generation and measurement, correlation and convolution, filtering, filter design, filter analysis and conversion, power spectrum analysis, system identification, decimation and sample rate change, and windowing.
Author: Geert van Boxtel [aut, cre] , Tom Short [aut] , Paul Kienzle [aut] , Ben Abbott [ctb], Juan Aguado [ctb], Muthiah Annamalai [ctb], Leonardo Araujo [ctb], William Asquith [ctb], David Bateman [ctb], David Billinghurst [ctb], Juan Pablo Carbajal [ctb], [...truncated...]
Maintainer: Geert van Boxtel <G.J.M.vanBoxtel@gmail.com>

Diff between gsignal versions 0.3-4 dated 2022-04-05 and 0.3-5 dated 2022-05-15

 DESCRIPTION                                             |   12 +--
 MD5                                                     |   64 ++++++++--------
 NAMESPACE                                               |    2 
 NEWS.md                                                 |   11 ++
 R/ar_psd.R                                              |   12 ++-
 R/decimate.R                                            |   10 +-
 R/findpeaks.R                                           |    3 
 R/mexihat.R                                             |    2 
 R/morlet.R                                              |    2 
 R/nuttallwin.R                                          |    2 
 R/pburg.R                                               |    2 
 R/pwelch.R                                              |   34 +++++---
 R/pyulear.R                                             |    2 
 R/sgolayfilt.R                                          |    3 
 R/specgram.R                                            |   12 +--
 R/upfirdn.R                                             |    3 
 README.md                                               |    2 
 build/partial.rdb                                       |binary
 build/vignette.rds                                      |binary
 inst/doc/gsignal.Rmd                                    |    2 
 inst/doc/gsignal.html                                   |   16 ++--
 man/ar_psd.Rd                                           |   10 ++
 man/decimate.Rd                                         |    2 
 man/mexihat.Rd                                          |    2 
 man/morlet.Rd                                           |    2 
 man/nuttallwin.Rd                                       |    2 
 man/pburg.Rd                                            |    2 
 man/pwelch.Rd                                           |   15 +++
 man/pyulear.Rd                                          |    2 
 man/specgram.Rd                                         |    6 -
 tests/testthat/test_Power_Spectrum_Analysis_Functions.R |   17 ++++
 tests/testthat/test_Sample_Rate_Change_Functions.R      |   29 +++++++
 vignettes/gsignal.Rmd                                   |    2 
 33 files changed, 195 insertions(+), 92 deletions(-)

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Package roclang updated to version 0.2.0 with previous version 0.1.4 dated 2022-02-01

Title: Functions for Diffusing Function Documentations into 'Roxygen' Comments
Description: Efficient diffusing of content across function documentations. Sections, parameters or dot parameters are extracted from function documentations and turned into valid Rd character strings, which are ready to diffuse into the 'roxygen' comments of another function by inserting inline code.
Author: Xiurui Zhu [aut, cre]
Maintainer: Xiurui Zhu <zxr6@163.com>

Diff between roclang versions 0.1.4 dated 2022-02-01 and 0.2.0 dated 2022-05-15

 DESCRIPTION                            |    8 +-
 MD5                                    |   12 ++--
 NEWS.md                                |   11 +++
 R/roc_text_functions.R                 |   79 ++++++++++++++++++++++++----
 README.md                              |   91 +++++++++++++++++++++------------
 man/extract_roc_text.Rd                |    1 
 tests/testthat/test-extract_roc_text.R |   43 ++++++++++++---
 7 files changed, 181 insertions(+), 64 deletions(-)

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Package Directional updated to version 5.4 with previous version 5.3 dated 2022-02-13

Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). An elliptically symmetric angular Gaussian distribution. Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). Comparison of discriminant analysis methods on the sphere. Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). Spherical regression models with general covariates and anisotropic errors. Statistics and Computing 30(1): 153--165. <doi:10.1007/s11222-019-09872-2>.
Author: Michail Tsagris, Giorgos Athineou, Christos Adam, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>

Diff between Directional versions 5.3 dated 2022-02-13 and 5.4 dated 2022-05-15

 DESCRIPTION                |    8 +--
 MD5                        |   94 ++++++++++++++++++++++-----------------------
 NAMESPACE                  |    2 
 R/circbeta.mle.R           |    2 
 R/circexp.mle.R            |    2 
 R/dirda.cv.R               |   82 ++++-----------------------------------
 R/dirknn.R                 |   48 +++-------------------
 R/dirknn.tune.R            |    6 +-
 R/embed.boot.R             |    4 -
 R/embed.perm.R             |    2 
 R/embedcirc.perm.R         |    2 
 R/esag.da.R                |    6 +-
 R/fishkent.R               |    2 
 R/hcf.boot.R               |    4 -
 R/hcf.perm.R               |    2 
 R/hcfcirc.perm.R           |    2 
 R/hclr.boot.R              |    4 -
 R/hclr.perm.R              |    2 
 R/het.boot.R               |    4 -
 R/het.perm.R               |    2 
 R/hetcirc.perm.R           |    2 
 R/iagesag.R                |    2 
 R/kent.datacontour.R       |   16 ++-----
 R/knnreg.tune.R            |    2 
 R/kuiper.R                 |    2 
 R/lr.boot.R                |    4 -
 R/lr.perm.R                |    2 
 R/lrcirc.boot.R            |    5 +-
 R/lrcirc.perm.R            |    2 
 R/makefolds.R              |    6 +-
 R/meandir.test.R           |    4 +
 R/rcircbeta.R              |    2 
 R/rfb.R                    |    2 
 R/rmixvmf.R                |    2 
 R/vmf.da.R                 |    6 +-
 R/watson.R                 |    2 
 R/wood.mle.R               |    2 
 man/Directional-package.Rd |    6 +-
 man/dirda.cv.Rd            |   36 +++++++++++------
 man/dirknn.Rd              |   13 +-----
 man/dirknn.tune.Rd         |   11 +----
 man/esag.da.Rd             |    6 +-
 man/knnreg.tune.Rd         |    4 -
 man/makefolds.Rd           |    4 -
 man/resag.Rd               |    6 +-
 man/rmixvmf.Rd             |    2 
 man/rvonmises.Rd           |    6 +-
 man/vmf.da.Rd              |    4 -
 48 files changed, 174 insertions(+), 267 deletions(-)

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Package nser (with last version 1.4.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-05-02 1.4.1
2022-01-05 1.4.0
2021-10-27 1.3.4
2021-10-08 1.3.3
2021-09-16 1.3.2
2021-09-13 1.3.1
2021-08-22 1.3.0
2021-08-09 1.2.0
2021-08-03 1.1.0
2021-07-12 1.0.0

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