Tue, 28 Jun 2022

Package sgof updated to version 2.3.3 with previous version 2.3.2 dated 2020-01-10

Title: Multiple Hypothesis Testing
Description: Seven different methods for multiple testing problems. The SGoF-type methods (see for example, Carvajal Rodríguez et al., 2009 <doi:10.1186/1471-2105-10-209>; de Uña Álvarez, 2012 <doi:10.1515/1544-6115.1812>; Castro Conde et al., 2015 <doi:10.1177/0962280215597580>) and the BH and BY false discovery rate controlling procedures.
Author: Irene Castro Conde and Jacobo de Una Alvarez
Maintainer: Irene Castro Conde <irene.castro@uvigo.es>

Diff between sgof versions 2.3.2 dated 2020-01-10 and 2.3.3 dated 2022-06-28

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Package reliabilitydiag updated to version 0.2.1 with previous version 0.2.0 dated 2021-11-02

Title: Reliability Diagrams Using Isotonic Regression
Description: Checking the reliability of predictions via the CORP approach, which generates provably statistically 'C'onsistent, 'O'ptimally binned, and 'R'eproducible reliability diagrams using the 'P'ool-adjacent-violators algorithm. See Dimitriadis, Gneiting, Jordan (2021) <doi:10.1073/pnas.2016191118>.
Author: Timo Dimitriadis [aut], Alexander I. Jordan [aut, cre]
Maintainer: Alexander I. Jordan <alexander.jordan@h-its.org>

Diff between reliabilitydiag versions 0.2.0 dated 2021-11-02 and 0.2.1 dated 2022-06-28

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Package netcmc updated to version 1.0.1 with previous version 1.0 dated 2022-02-07

Title: Spatio-Network Generalised Linear Mixed Models for Areal Unit and Network Data
Description: Implements a class of univariate and multivariate spatio-network generalised linear mixed models for areal unit and network data, with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC) simulation. The response variable can be binomial, Gaussian, or Poisson. Spatial autocorrelation is modelled by a set of random effects that are assigned a conditional autoregressive (CAR) prior distribution following the Leroux model (Leroux et al. (2000) <doi:10.1007/978-1-4612-1284-3_4>). Network structures are modelled by a set of random effects that reflect a multiple membership structure (Browne et al. (2001) <doi:10.1177/1471082X0100100202>).
Author: George Gerogiannis, Mark Tranmer, Duncan Lee
Maintainer: George Gerogiannis <g.gerogiannis.1@research.gla.ac.uk>

Diff between netcmc versions 1.0 dated 2022-02-07 and 1.0.1 dated 2022-06-28

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Package EDIutils updated to version 1.0.1 with previous version 1.0.0 dated 2022-06-01

Title: An API Client for the Environmental Data Initiative Repository
Description: A client for the Environmental Data Initiative repository REST API. The 'EDI' data repository <https://portal.edirepository.org/nis/home.jsp> is for publication and reuse of ecological data with emphasis on metadata accuracy and completeness. It is built upon the 'PASTA+' software stack <https://pastaplus-core.readthedocs.io/en/latest/index.html#> and was developed in collaboration with the US 'LTER' Network <https://lternet.edu/>. 'EDIutils' includes functions to search and access existing data, evaluate and upload new data, and assist other data management tasks common to repository users.
Author: Colin Smith [aut, cre] , Corinna Gries [ctb] , Jasmine Lai [rev] , Rodrigo Pires [rev]
Maintainer: Colin Smith <colin.smith@wisc.edu>

Diff between EDIutils versions 1.0.0 dated 2022-06-01 and 1.0.1 dated 2022-06-28

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Package WordR updated to version 0.3.3 with previous version 0.3.2 dated 2021-12-16

Title: Rendering Word Documents with R Inline Code
Description: Serves for rendering MS Word documents with R inline code and inserting tables and plots.
Author: Tomas Hovorka
Maintainer: Tomas Hovorka <tomashovorka@seznam.cz>

Diff between WordR versions 0.3.2 dated 2021-12-16 and 0.3.3 dated 2022-06-28

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Package politeness updated to version 0.8.7 with previous version 0.8.6 dated 2022-02-26

Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness. We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>

Diff between politeness versions 0.8.6 dated 2022-02-26 and 0.8.7 dated 2022-06-28

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Package pacs updated to version 0.4.8 with previous version 0.4.5 dated 2022-05-10

Title: Supplementary Tools for R Packages Developers
Description: Supplementary utils for CRAN maintainers and R packages developers. Validating the library, packages and lock files. Exploring a complexity of a specific package like evaluating its size in bytes with all dependencies. The shiny app complexity could be explored too. Assessing the life duration of a specific package version. Checking a CRAN package check page status for any errors and warnings. Retrieving a DESCRIPTION or NAMESPACE file for any package version. Comparing DESCRIPTION or NAMESPACE files between different package versions. Getting a list of all releases for a specific package. The Bioconductor is partly supported.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>

Diff between pacs versions 0.4.5 dated 2022-05-10 and 0.4.8 dated 2022-06-28

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Package doc2concrete updated to version 0.5.6 with previous version 0.5.4 dated 2021-05-17

Title: Measuring Concreteness in Natural Language
Description: Models for detecting concreteness in natural language. This package is built in support of Yeomans (2021) <doi:10.1016/j.obhdp.2020.10.008>, which reviews linguistic models of concreteness in several domains. Here, we provide an implementation of the best-performing domain-general model (from Brysbaert et al., (2014) <doi:10.3758/s13428-013-0403-5>) as well as two pre-trained models for the feedback and plan-making domains.
Author: Mike Yeomans
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>

Diff between doc2concrete versions 0.5.4 dated 2021-05-17 and 0.5.6 dated 2022-06-28

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New package statcodelists with initial version 0.9.2
Package: statcodelists
Title: Use Standardized Statistical Codelists
Version: 0.9.2
Description: The goal of statcodelists is to promote the reuse and exchange of statistical information and related metadata with making the internationally standardized SDMX code lists available for the R user. SDMX has been published as an ISO International Standard (ISO 17369). The metadata definitions, including the codelists are updated regularly according to the standard. The authoritative version of the code lists made available in this package is <https://sdmx.org/?page_id=3215/>.
Language: en-US
License: CC0
URL: https://statcodelists.dataobservatory.eu, https://github.com/antaldaniel
BugReports: https://github.com/antaldaniel/statcodelists/issues
Encoding: UTF-8
Depends: R (>= 2.10)
LazyData: true
Suggests: spelling
NeedsCompilation: no
Packaged: 2022-06-28 08:19:42 UTC; Daniel Antal
Author: Daniel Antal [aut, cre]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Repository: CRAN
Date/Publication: 2022-06-28 16:20:02 UTC

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New package spectralR with initial version 0.1.2
Package: spectralR
Title: Obtain and Visualize Spectral Reflectance Data for Earth Surface Polygons
Version: 0.1.2
Description: Tools for obtaining, processing, and visualizing spectral reflectance data for the user-defined land or water surface classes for visual exploring in which wavelength the classes differ. Input should be a shapefile with polygons of surface classes (it might be different habitat types, crops, vegetation, etc.). The Sentinel-2 L2A satellite mission optical bands pixel data are obtained through the Google Earth Engine service (<https://earthengine.google.com/>) and used as a source of spectral data.
Depends: R (>= 4.1.0)
Imports: rgee (>= 1.1.3), geojsonio (>= 0.9.4), sf (>= 1.0-7), dplyr (>= 1.0.9), ggplot2 (>= 3.3.5), reshape2 (>= 1.4.0), rlang (>= 1.0.0), tibble (>= 3.1.0), tidyr (>= 1.2.0)
Suggests: tinytest (>= 1.3.0)
License: GPL-3
URL: https://github.com/olehprylutskyi/spectralR/
BugReports: https://github.com/olehprylutskyi/spectralR/issues
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-06-28 08:49:51 UTC; mik
Author: Oleh Prylutskyi [aut, cre], Dariia Shyriaieva [ctb], Vladimir Mikryukov [ctb]
Maintainer: Oleh Prylutskyi <oleh.prylutskyi@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-28 16:30:02 UTC

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New package segen with initial version 1.0.0
Package: segen
Title: Sequence Generalization Through Similarity Network
Version: 1.0.0
Author: Giancarlo Vercellino
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Description: Proposes an application for sequence prediction generalizing the similarity within the network of previous sequences.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6)
Imports: purrr (>= 0.3.4), ggplot2 (>= 3.3.5), readr (>= 2.1.2), lubridate (>= 1.7.10), imputeTS (>= 3.2), fANCOVA (>= 0.6-1), scales (>= 1.1.1), tictoc (>= 1.0.1), modeest (>= 2.4.0), moments (>= 0.14), greybox (>= 1.0.1), philentropy (>= 0.5.0), entropy (>= 1.3.1), Rfast (>= 2.0.6), narray (>= 0.4.1.1)
URL: https://rpubs.com/giancarlo_vercellino/segen
NeedsCompilation: no
Packaged: 2022-06-28 08:08:25 UTC; gvercellino
Repository: CRAN
Date/Publication: 2022-06-28 16:20:05 UTC

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New package kmscv with initial version 0.1.0
Package: kmscv
Title: K-Means Based Stratified Resampling
Version: 0.1.0
Description: An 'rsample' extension to create cluster based stratified resamples for cross-validation.
License: GPL (>= 3)
Encoding: UTF-8
Imports: parsnip,rsample,tibble,purrr,dplyr
BugReports: https://github.com/sametsoekel/kmscv/issues
NeedsCompilation: no
Packaged: 2022-06-28 07:27:37 UTC; samet.sokel
Author: Samet Sokel [aut, cre]
Maintainer: Samet Sokel <a_s@eskisehir.edu.tr>
Repository: CRAN
Date/Publication: 2022-06-28 16:20:08 UTC

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New package xQTLbiolinks with initial version 1.0.0
Package: xQTLbiolinks
Title: An R Package for Integrative Analysis of Quantitative Trait Locus Data of 'GTEx'
Version: 1.0.0
Description: User can query, download, and visualize of molecular quantitative trait locus and gene expression data from public resources through the application programming interface <https://gtexportal.org/home/api-docs/index.html> of 'GTEx'.
URL: https://github.com/dingruofan/xQTLbiolinks
BugReports: https://github.com/dingruofan/xQTLbiolinks/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.00)
VignetteBuilder: knitr
Imports: BiocGenerics, cowplot (>= 1.1.1), curl (>= 4.3.2), data.table (>= 1.14.2), DBI, GenomeInfoDb, GenomicRanges, ggplot2 (>= 3.3.6), ggrepel, ggridges, httr, IRanges, jsonlite (>= 1.7.2), PupillometryR, RMySQL, scales, stringr (>= 1.4.0), SummarizedExperiment (>= 1.4.0), utils (>= 4.0.3), viridis
Suggests: coloc, knitr, rtracklayer, usethis
NeedsCompilation: no
Packaged: 2022-06-27 19:19:29 UTC; DELL
Author: Ruofan Ding [aut, cre], Xudong Zou [aut, ctb], Yangmei Qin [aut, ctb], Gao Wang [aut, ctb], Lei Li [aut, ctb, cph]
Maintainer: Ruofan Ding <dingruofan1@foxmail.com>
Repository: CRAN
Date/Publication: 2022-06-28 16:00:02 UTC

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New package WeibullR.ALT with initial version 0.7.2
Package: WeibullR.ALT
Title: Accelerated Life Testing Using 'WeibullR'
Version: 0.7.2
Date: 2022-6-27
Description: Graphical data analysis of accelerated life tests. Methods derived from Wayne Nelson (1990, ISBN: 9780471522775), William Q. Meeker and Lois A. Escobar (1998, ISBN: 1-471-14328-6).
License: GPL (>= 3)
Copyright: copyright (c) OpenReliability.org 2022
Author: David Silkworth [aut], Jacob Ormerod [cre], OpenReliability.org [cph]
Depends: R (>= 3.5.0), WeibullR, methods
URL: http://www.openreliability.org/weibull-r-weibull-analysis-on-r/
LazyLoad: yes
NeedsCompilation: no
Packaged: 2022-06-27 15:23:15 UTC; djsil
Maintainer: Jacob Ormerod <jake@openreliability.org>
Repository: CRAN
Date/Publication: 2022-06-28 15:50:06 UTC

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New package tcgaViz with initial version 1.0.0
Package: tcgaViz
Title: Visualization Tool for the Cancer Genome Atlas Program (TCGA)
Version: 1.0.0
Description: Differential analysis of tumor tissue immune cell type abundance based on RNA-seq gene-level expression from The Cancer Genome Atlas (TCGA; <https://pancanatlas.xenahubs.net>) database.
License: GPL-3
Depends: R (>= 2.10)
Imports: config, data.table, dplyr, DT, ggplot2, ggpubr, golem, grDevices, magrittr, methods, openxlsx, plotly, readr, reshape2, rlang, rstatix, shiny, shinyFeedback, shinyjs, stats, stringr, tidyr, tidyselect, utils
Suggests: BiocCheck, covr, knitr, rmarkdown, spelling, testthat
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: false
NeedsCompilation: no
Packaged: 2022-06-27 14:26:10 UTC; rstudio
Author: Etienne Camenen [aut, cre], Gilles Marodon [aut], Nicolas Aubert [aut]
Maintainer: Etienne Camenen <etienne.camenen@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-28 15:50:02 UTC

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New package qsplines with initial version 0.1.0
Package: qsplines
Title: Quaternions Splines
Version: 0.1.0
Description: Provides routines to create some quaternions splines: Barry-Goldman algorithm, De Casteljau algorithm, and Kochanek-Bartels algorithm. The implementations are based on the Python library 'splines'. Quaternions splines allow to construct spherical curves. References: Barry and Goldman <doi:10.1145/54852.378511>, Kochanek and Bartels <doi:10.1145/800031.808575>.
License: GPL-3
URL: https://github.com/stla/qsplines
BugReports: https://github.com/stla/qsplines/issues
Depends: onion
Imports: shiny, stats, utils
Suggests: rgl
Encoding: UTF-8
NeedsCompilation: no
Packaged: 2022-06-27 08:54:43 UTC; SDL96354
Author: Stephane Laurent [aut, cre], Matthias Geier [aut]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Repository: CRAN
Date/Publication: 2022-06-28 15:30:02 UTC

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New package OBL with initial version 0.1.0
Package: OBL
Title: Optimum Block Length
Version: 0.1.0
Maintainer: Daniel James <futathesis@gmail.com>
Description: Obtain optimum block from Non-overlapping Block Bootstrap method.
Depends: R (>= 4.2.0)
Imports: forecast, foreach, doParallel, parallel, future, utils, stats, tibble
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-06-27 18:13:56 UTC; economia
Author: Daniel James [cre, aut], Ayinde Kayode [aut]
Repository: CRAN
Date/Publication: 2022-06-28 16:00:05 UTC

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New package IDEAFilter with initial version 0.1.2
Package: IDEAFilter
Version: 0.1.2
Title: Agnostic, Idiomatic Data Filter Module for Shiny
Description: When added to an existing shiny app, users may subset any developer-chosen R data.frame on the fly. That is, users are empowered to slice & dice data by applying multiple (order specific) filters using the AND (&) operator between each, and getting real-time updates on the number of rows effected/available along the way. Thus, any downstream processes that leverage this data source (like tables, plots, or statistical procedures) will re-render after new filters are applied. The shiny module’s user interface has a 'minimalist' aesthetic so that the focus can be on the data & other visuals. In addition to returning a reactive (filtered) data.frame, 'IDEAFilter' as also returns 'dplyr' filter statements used to actually slice the data.
License: AGPL-3
URL: https://biogen-inc.github.io/IDEAFilter/
BugReports: https://github.com/Biogen-Inc/IDEAFilter/issues
Encoding: UTF-8
Imports: shiny, ggplot2, pillar (>= 1.5.0), crayon, RColorBrewer, shinyTime, purrr
Suggests: shinytest, shinytest2, testthat, knitr, rmarkdown, spelling, dplyr
Language: en-US
NeedsCompilation: no
Packaged: 2022-06-27 15:53:49 UTC; aclark5
Author: Aaron Clark [aut, cre] , Doug Kelkhoff [aut], Maya Gans [ctb], Jeff Thompson [ctb], Biogen [cph]
Maintainer: Aaron Clark <clark.aaronchris@gmail.com>
Repository: CRAN
Date/Publication: 2022-06-28 15:50:08 UTC

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Package robservable updated to version 0.2.2 with previous version 0.2.1 dated 2021-10-06

Title: Import an Observable Notebook as HTML Widget
Description: Allows loading and displaying an Observable notebook (online JavaScript notebooks powered by <https://observablehq.com>) as an HTML Widget in an R session, 'shiny' application or 'rmarkdown' document.
Author: Julien Barnier [aut, cre], Kenton Russell [aut]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>

Diff between robservable versions 0.2.1 dated 2021-10-06 and 0.2.2 dated 2022-06-28

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 12 files changed, 191 insertions(+), 222 deletions(-)

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Package GaussSuppression updated to version 0.4.0 with previous version 0.3.0 dated 2022-05-24

Title: Tabular Data Suppression using Gaussian Elimination
Description: A statistical disclosure control tool to protect tables by suppression using the Gaussian elimination secondary suppression algorithm. Primary suppression functions for the minimum frequency rule, the dominance rule and a directly-disclosive rule are included. General primary suppression functions can be supplied as input. Suppressed frequencies can be replaced by synthetic decimal numbers as described in Langsrud (2019) <doi:10.1007/s11222-018-9848-9>.
Author: Oyvind Langsrud [aut, cre], Daniel Lupp [aut], Hege Boevelstad [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>

Diff between GaussSuppression versions 0.3.0 dated 2022-05-24 and 0.4.0 dated 2022-06-28

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Package evgam updated to version 1.0.0 with previous version 0.1.4 dated 2020-08-26

Title: Generalised Additive Extreme Value Models
Description: Methods for fitting various extreme value distributions with parameters of generalised additive model (GAM) form are provided. For details of distributions see Coles, S.G. (2001) <doi:10.1007/978-1-4471-3675-0>, GAMs see Wood, S.N. (2017) <doi:10.1201/9781315370279>, and the fitting approach see Wood, S.N., Pya, N. & Safken, B. (2016) <doi:10.1080/01621459.2016.1180986>. Details of how evgam works and various examples are given in Youngman, B.D. (2022) <doi:10.18637/jss.v103.i03>.
Author: Ben Youngman
Maintainer: Ben Youngman <b.youngman@exeter.ac.uk>

Diff between evgam versions 0.1.4 dated 2020-08-26 and 1.0.0 dated 2022-06-28

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Package eatTools updated to version 0.7.3 with previous version 0.7.2 dated 2022-05-05

Title: Miscellaneous Functions for the Analysis of Educational Assessments
Description: Miscellaneous functions for data cleaning and data analysis of educational assessments. Includes functions for descriptive analyses, character vector manipulations and weighted statistics. Mainly a lightweight dependency for the packages 'eatRep', 'eatGADS', 'eatPrep' and 'eatModel' (which will be subsequently submitted to 'CRAN'). The function for defining (weighted) contrasts in weighted effect coding refers to te Grotenhuis et al. (2017) <doi:10.1007/s00038-016-0901-1>. Functions for weighted statistics refer to Wolter (2007) <doi:10.1007/978-0-387-35099-8>.
Author: Sebastian Weirich [aut, cre], Martin Hecht [aut], Karoline Sachse [aut], Benjamin Becker [aut], Nicole Mahler [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>

Diff between eatTools versions 0.7.2 dated 2022-05-05 and 0.7.3 dated 2022-06-28

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Permanent link

Package DatabaseConnector updated to version 5.0.4 with previous version 5.0.3 dated 2022-06-08

Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server', 'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Spark', and 'SQLite'). Also includes support for fetching data as 'Andromeda' objects. Uses 'Java Database Connectivity' ('JDBC') to connect to databases (except SQLite).
Author: Martijn Schuemie [aut, cre], Marc Suchard [aut], Observational Health Data Science and Informatics [cph], Microsoft Inc. [cph] , PostgreSQL Global Development Group [cph] , Oracle Inc. [cph] , Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>

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Package UniprotR updated to version 2.1.1 with previous version 2.1.0 dated 2021-09-23

Title: Retrieving Information of Proteins from Uniprot
Description: Connect to Uniprot <https://www.uniprot.org/> to retrieve information about proteins using their accession number such information could be name or taxonomy information, For detailed information kindly read the publication <https://www.sciencedirect.com/science/article/pii/S1874391919303859>.
Author: Mohamed Soudy [aut, cre], Ali Mostafa [aut]
Maintainer: Mohamed Soudy <MohmedSoudy2009@gmail.com>

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Package sld updated to version 1.0.1 with previous version 1.0.0 dated 2021-12-05

Title: Estimation and Use of the Quantile-Based Skew Logistic Distribution
Description: The skew logistic distribution is a quantile-defined generalisation of the logistic distribution (van Staden and King 2015). Provides random numbers, quantiles, probabilities, densities and density quantiles for the distribution. It provides Quantile-Quantile plots and method of L-Moments estimation (including asymptotic standard errors) for the distribution.
Author: Robert King [aut, cre] , Paul van Staden [aut]
Maintainer: Robert King <Robert.King.Newcastle@gmail.com>

Diff between sld versions 1.0.0 dated 2021-12-05 and 1.0.1 dated 2022-06-28

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Package cmsafops updated to version 1.2.5 with previous version 1.2.4 dated 2022-03-15

Title: Tools for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable monitoring of the climate system by providing essential climate variables related to the energy and water cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight National Meteorological and Hydrological Services. The 'cmsafops' R-package provides a collection of R-operators for the analysis and manipulation of CM SAF NetCDF formatted data. Other CF conform NetCDF data with time, longitude and latitude dimension should be applicable, but there is no guarantee for an error-free application. CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>). Detailed information and test data are provided on the CM SAF webpage (<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre], Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>

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Package cmsaf updated to version 3.4.3 with previous version 3.4.2 dated 2022-03-18

Title: A Toolbox for CM SAF NetCDF Data
Description: The Satellite Application Facility on Climate Monitoring (CM SAF) is a ground segment of the European Organization for the Exploitation of Meteorological Satellites (EUMETSAT) and one of EUMETSATs Satellite Application Facilities. The CM SAF contributes to the sustainable monitoring of the climate system by providing essential climate variables related to the energy and water cycle of the atmosphere (<https://www.cmsaf.eu>). It is a joint cooperation of eight National Meteorological and Hydrological Services. The 'cmsaf' R-package includes a 'shiny' based interface for an easy application of the 'cmsafops' and 'cmsafvis' packages - the CM SAF R Toolbox. The Toolbox offers an easy way to prepare, manipulate, analyse and visualize CM SAF NetCDF formatted data. Other CF conform NetCDF data with time, longitude and latitude dimension should be applicable, but there is no guarantee for an error-free application. CM SAF climate data records are provided for free via (<https://wui.cmsaf.eu/safira>). Detailed information and test data are provided on the CM SAF webpage (<http://www.cmsaf.eu/R_toolbox>).
Author: Steffen Kothe [aut, cre], Danny Parsons [ctb]
Maintainer: Steffen Kothe <Steffen.Kothe@dwd.de>

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Package WeightIt updated to version 0.13.1 with previous version 0.12.0 dated 2021-04-03

Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with binary, multi-category, or continuous point or longitudinal treatments by easing and extending the functionality of several R packages and providing in-house estimation methods. Available methods include propensity score weighting using generalized linear models, gradient boosting machines, the covariate balancing propensity score algorithm, Bayesian additive regression trees, and SuperLearner, and directly estimating balancing weights using entropy balancing, empirical balancing calibration weights, energy balancing, and optimization-based weights. Also allows for assessment of weights and checking of covariate balance by interfacing directly with the 'cobalt' package. See the vignette "Installing Supporting Packages" for instructions on how to install any package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>

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Package SPOTMisc updated to version 1.19.40 with previous version 1.19.26 dated 2022-05-30

Title: Misc Extensions for the 'SPOT' Package
Description: Implements additional models, simulation tools, and interfaces as extensions to 'SPOT'. It provides tools for hyperparameter tuning via 'keras/tensorflow', interfacing 'mlr', for performing Markov chain simulations, and for sensitivity analysis based on sequential bifurcation methods as described in Bettonvil and Kleijnen (1996). Furthermore, additional plotting functions for output from 'SPOT' runs are implemented. Bartz-Beielstein T, Lasarczyk C W G, Preuss M (2005) <doi:10.1109/CEC.2005.1554761>. Bartz-Beielstein T, Zaefferer M, Rehbach F (2021) <arXiv:1712.04076>. Bartz-Beielstein T, Rehbach F, Sen A, Zaefferer M <arXiv:2105.14625>. Bettonvil, B, Kleijnen JPC (1996) <doi:10.1016/S0377-2217(96)00156-7>.
Author: Thomas Bartz-Beielstein [aut, cre] , Martin Zaefferer [aut] , Frederik Rehbach [aut]
Maintainer: Thomas Bartz-Beielstein <tbb@bartzundbartz.de>

Diff between SPOTMisc versions 1.19.26 dated 2022-05-30 and 1.19.40 dated 2022-06-28

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Package mlr3tuningspaces updated to version 0.3.0 with previous version 0.2.0 dated 2022-04-12

Title: Search Spaces for Hyperparameter Tuning
Description: Collection of search spaces for hyperparameter tuning. Includes various search spaces that can be directly applied on an `mlr3` learner. Additionally, meta information about the search space can be queried.
Author: Marc Becker [cre, aut] , Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>

Diff between mlr3tuningspaces versions 0.2.0 dated 2022-04-12 and 0.3.0 dated 2022-06-28

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Package dfidx updated to version 0.0-5 with previous version 0.0-4 dated 2021-02-03

Title: Indexed Data Frames
Description: Provides extended data frames, with a special data frame column which contains two indexes, with potentially a nesting structure.
Author: Yves Croissant [aut, cre]
Maintainer: Yves Croissant <yves.croissant@univ-reunion.fr>

Diff between dfidx versions 0.0-4 dated 2021-02-03 and 0.0-5 dated 2022-06-28

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Package cocor updated to version 1.1-4 with previous version 1.1-3 dated 2016-05-28

Title: Comparing Correlations
Description: Statistical tests for the comparison between two correlations based on either independent or dependent groups. Dependent correlations can either be overlapping or nonoverlapping. A web interface is available on the website <http://comparingcorrelations.org>. A plugin for the R GUI and IDE RKWard is included. Please install RKWard from <https://rkward.kde.org> to use this feature. The respective R package 'rkward' cannot be installed directly from a repository, as it is a part of RKWard.
Author: Birk Diedenhofen [aut, cre]
Maintainer: Birk Diedenhofen <mail@birkdiedenhofen.de>

Diff between cocor versions 1.1-3 dated 2016-05-28 and 1.1-4 dated 2022-06-28

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Package clustEff updated to version 0.3.0 with previous version 0.2.0 dated 2020-06-08

Title: Clusters of Effects Curves in Quantile Regression Models
Description: Clustering method to cluster both effects curves, through quantile regression coefficient modeling, and curves in functional data analysis. Sottile G. and Adelfio G. (2019) <doi:10.1007/s00180-018-0817-8>.
Author: Gianluca Sottile [aut, cre], Giada Adelfio [aut]
Maintainer: Gianluca Sottile <gianluca.sottile@unipa.it>

Diff between clustEff versions 0.2.0 dated 2020-06-08 and 0.3.0 dated 2022-06-28

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Package Carlson updated to version 1.1.0 with previous version 1.0.1 dated 2021-01-16

Title: Carlson Elliptic Integrals and Incomplete Elliptic Integrals
Description: Evaluation of the Carlson elliptic integrals and the incomplete elliptic integrals with complex arguments. The implementations use Carlson's algorithms <doi:10.1007/BF02198293>. Applications of elliptic integrals include probability distributions, geometry, physics, mechanics, electrodynamics, statistical mechanics, astronomy, geodesy, geodesics on conics, and magnetic field calculations.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>

Diff between Carlson versions 1.0.1 dated 2021-01-16 and 1.1.0 dated 2022-06-28

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New package bentcableAR with initial version 0.3.1
Package: bentcableAR
Title: Bent-Cable Regression for Independent Data or Autoregressive Time Series
Version: 0.3.1
Date: 2022-06-27
Author: Grace Chiu <bentcable@gmail.com>, Virginia Institute of Marine Science, William & Mary PO Box 1346, Gloucester Point, VA 23062, USA
Maintainer: Grace Chiu <bentcable@gmail.com>
Description: Included are two main interfaces, bentcable.ar() and bentcable.dev.plot(), for fitting and diagnosing bent-cable regressions for autoregressive time-series data (Chiu and Lockhart 2010, <doi:10.1002/cjs.10070>) or independent data (time series or otherwise - Chiu, Lockhart and Routledge 2006, <doi:10.1198/016214505000001177>). Some components in the package can also be used as stand-alone functions. The bent cable (linear-quadratic-linear) generalizes the broken stick (linear-linear), which is also handled by this package. Version 0.2 corrected a glitch in the computation of confidence intervals for the CTP. References that were updated from Versions 0.2.1 and 0.2.2 appear in Version 0.2.3 and up. Version 0.3.0 improved robustness of the error-message producing mechanism. Version 0.3.1 improves the NAMESPACE file of the package. It is the author's intention to distribute any future updates via GitHub.
License: GPL (>= 3)
Packaged: 2022-06-28 02:13:33 UTC; gschiu
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2022-06-28 10:40:02 UTC

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Package rromeo (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-03-11 0.1.1
2019-05-16 0.1.0

Permanent link
Package SqueakR updated to version 1.3.0 with previous version 1.2.5 dated 2022-06-22

Title: An Experiment Interface for 'DeepSqueak' Bioacoustics Research
Description: Data processing and visualizations for rodent vocalizations exported from 'DeepSqueak'. These functions are compatible with the 'SqueakR' Shiny Dashboard, which can be used to visualize experimental results and analyses.
Author: Simon Ogundare [aut, cre]
Maintainer: Simon Ogundare <simon.ogundare@columbia.edu>

Diff between SqueakR versions 1.2.5 dated 2022-06-22 and 1.3.0 dated 2022-06-28

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Package eventdataR updated to version 0.3.1 with previous version 0.3.0 dated 2022-05-11

Title: Event Data Repository
Description: Event dataset repository including both real-life and artificial event logs. They can be used in combination with functionalities provided by the 'bupaR' packages. Janssenswillen et al. (2020) <http://ceur-ws.org/Vol-2703/paperTD7.pdf>.
Author: Gert Janssenswillen [aut, cre]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>

Diff between eventdataR versions 0.3.0 dated 2022-05-11 and 0.3.1 dated 2022-06-28

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New package ecostats with initial version 1.1.10
Package: ecostats
Title: Code and Data Accompanying the Eco-Stats Text (Warton 2022)
Version: 1.1.10
Date: 2022-06-28
Description: Functions and data supporting the Eco-Stats text (Warton, 2022, Springer), and solutions to exercises. Functions include tools for using simulation envelopes in diagnostic plots, and a function for diagnostic plots of multivariate linear models. Datasets mentioned in the package are included here (where not available elsewhere) and there is a vignette for each chapter of the text with solutions to exercises.
License: LGPL (>= 2.1)
Imports: ecoCopula, GET, graphics, grDevices, MASS, mgcv, mvtnorm, stats
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5.0), mvabund (>= 4.2)
Suggests: knitr, rmarkdown, ade4, caper, car, corrplot, DAAG, DHARMa, dplyr, ecomix, gclus, GGally, ggplot2, ggthemes, glmnet, gllvm, glmmTMB, GPArotation, grplasso, lattice, leaps, lme4, MCMCglmm, multcomp, nlme, ordinal, permute, pgirmess, phylobase, phylosignal, psych, reshape2, smatr, testthat, vegan, VGAM
Additional_repositories: https://dwarton.github.io/drat
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-06-28 07:10:35 UTC; z3103495
Author: David Warton [aut, cre], Christopher Chung [ctb], Mark Donoghoe [ctb], Eve Slavich [ctb]
Maintainer: David Warton <david.warton@unsw.edu.au>
Repository: CRAN
Date/Publication: 2022-06-28 09:30:02 UTC

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Package SLICER (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2017-08-22 0.2.0

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Package ycevo updated to version 0.1.2 with previous version 0.1.1 dated 2022-06-16

Title: Nonparametric Estimation of the Yield Curve Evolution
Description: Nonparametric estimation of the discount rate and yield curve. Koo, B., La Vecchia, D., & Linton, O. B. (2021) <doi:10.1016/j.jeconom.2020.04.014> describe the application with the Center for Research in Security Prices (CRSP) Bond Data and document the methods of this package.
Author: Bonsoo Koo [aut], Nathaniel Tomasetti [aut], Kai-Yang Goh [aut], Yangzhuoran Fin Yang [aut, cre]
Maintainer: Yangzhuoran Fin Yang <yangyangzhuoran@gmail.com>

Diff between ycevo versions 0.1.1 dated 2022-06-16 and 0.1.2 dated 2022-06-28

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New package VisualizeSimon2Stage with initial version 0.1.0
Package: VisualizeSimon2Stage
Title: Visualize Simon's Two-Stage Design
Version: 0.1.0
Date: 2022-06-26
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Description: Functions for visualizing the probabilities of early termination, fail and success of Simon's two-stage design. Functions for evaluating and visualizing the operating characteristics of Simon's two-stage design.
License: GPL-2
Imports: methods
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.2.0),ggplot2
Suggests: clinfun
NeedsCompilation: no
Packaged: 2022-06-26 20:32:48 UTC; txz003
Repository: CRAN
Date/Publication: 2022-06-28 07:20:05 UTC

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New package odns with initial version 1.0.0
Package: odns
Title: Access Scottish Health and Social Care Open Data
Version: 1.0.0
Description: Allows potential users of Scottish Health and Social Care Open Data (<https://www.opendata.nhs.scot/>) to easily explore and extract the available data.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: glue, httr, utils, data.table, methods, jsonlite
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), mockery, digest
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-06-27 08:02:31 UTC; friday
Author: James Hardy [aut, cre]
Maintainer: James Hardy <jrh-dev@protonmail.com>
Repository: CRAN
Date/Publication: 2022-06-28 07:30:02 UTC

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New package hdtg with initial version 0.1.0
Package: hdtg
Title: Generate Samples from Multivariate Truncated Normal Distributions
Version: 0.1.0
Maintainer: Zhenyu Zhang <zhangzhenyusa@gmail.com>
Description: Efficient sampling from high-dimensional truncated Gaussian distributions (so comes the package name hdtg). Techniques include zigzag Hamiltonian Monte Carlo as in Akihiko Nishimura, Zhenyu Zhang and Marc A. Suchard (2021) <arXiv:2104.07694>, and harmonic Hamiltonian Monte Carlo in Ari Pakman and Liam Paninski (2014) <doi:10.1080/10618600.2013.788448>.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: Rcpp, RcppParallel, RcppXsimd, mgcv, stats, Rdpack
LinkingTo: Rcpp, RcppEigen, RcppParallel, RcppXsimd
SystemRequirements: C++14
NeedsCompilation: yes
Packaged: 2022-06-26 21:02:33 UTC; zhenyuzhang
Author: Zhenyu Zhang [aut, cre], Andrew Chin [aut], Akihiko Nishimura [aut], Marc A. Suchard [aut], John W. Ratcliff et al. [cph, ctb]
Repository: CRAN
Date/Publication: 2022-06-28 07:20:02 UTC

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Package gosset updated to version 0.4 with previous version 0.3 dated 2022-03-08

Title: Tools for Data Analysis in Experimental Agriculture
Description: Toolkit for a workflow to analyse experimental agriculture data, from data synthesis to model selection and visualisation. The package is named after W.S. Gosset aka ‘Student’, a pioneer of modern statistics in small sample experimental design and analysis.
Author: Kauê de Sousa [aut, cre] , Jacob van Etten [aut] , David Brown [aut] , Jonathan Steinke [aut]
Maintainer: Kauê de Sousa <desousa.kaue@gmail.com>

Diff between gosset versions 0.3 dated 2022-03-08 and 0.4 dated 2022-06-28

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New package CondMVT with initial version 0.1.0
Package: CondMVT
Title: Conditional Multivariate t Distribution, Expectation Maximization Algorithm, and Its Stochastic Variants
Version: 0.1.0
Maintainer: Paul Kinyanjui <kinyanjui.access@gmail.com>
Description: Computes conditional multivariate t probabilities, random deviates, and densities. It can also be used to create missing values at random in a dataset, resulting in a missing at random (MAR) mechanism. Inbuilt in the package are the Expectation-Maximization (EM), Monte Carlo EM, and Stochastic EM algorithms for imputation of missing values in datasets assuming the multivariate t distribution. See Kinyanjui, Tamba, Orawo, and Okenye (2020)<doi:10.3233/mas-200493>, and Kinyanjui, Tamba, and Okenye(2021)<http://www.ceser.in/ceserp/index.php/ijamas/article/view/6726/0> for more details.
License: MIT + file LICENSE
Encoding: UTF-8
Imports: stats, mvtnorm
NeedsCompilation: no
Packaged: 2022-06-26 20:52:27 UTC; Lenovo
Author: Paul Kinyanjui [aut, cre], Cox Tamba [aut], Justin Okenye [aut], Luke Orawo [ctb]
Repository: CRAN
Date/Publication: 2022-06-28 07:20:08 UTC

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