Title: Supporting Functions for Packages Maintained by 'YuLab-SMU'
Description: Miscellaneous functions commonly used by 'YuLab-SMU'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between yulab.utils versions 0.0.4 dated 2021-10-09 and 0.0.5 dated 2022-06-29
DESCRIPTION | 9 +++---- MD5 | 15 ++++++++---- NAMESPACE | 5 ++++ NEWS.md |only R/file.R | 17 +++++++++++++ R/install_zip.R | 8 +++++- R/pkg-utils.R | 62 ++++++++++++++++++++++++++++++++++++++++++++++++++- man/Githubpkg.Rd |only man/cran-bioc-pkg.Rd |only man/mypkg.Rd |only man/show_in_excel.Rd |only 11 files changed, 103 insertions(+), 13 deletions(-)
Title: Efficient Branch and Bound Variable Selection for GLMs using
'RcppArmadillo'
Description: Performs efficient and scalable glm best
subset selection using a novel implementation of a branch and bound algorithm.
To speed up the model fitting process, a range of optimization
methods are implemented in 'RcppArmadillo'. Parallel computation
is available using 'OpenMP'.
Author: Jacob Seedorff [aut, cre]
Maintainer: Jacob Seedorff <jwseedorff@uiowa.edu>
Diff between BranchGLM versions 1.1.2 dated 2022-06-23 and 1.1.3 dated 2022-06-29
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/VariableSelection.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Interface to 'TensorFlow' Datasets
Description: Interface to 'TensorFlow' Datasets, a high-level library for
building complex input pipelines from simple, re-usable pieces.
See <https://www.tensorflow.org/guide> for additional
details.
Author: Tomasz Kalinowski [ctb, cph, cre],
Daniel Falbel [ctb, cph],
JJ Allaire [aut, cph],
Yuan Tang [aut] ,
Kevin Ushey [aut],
RStudio [cph, fnd],
Google Inc. [cph]
Maintainer: Tomasz Kalinowski <tomasz.kalinowski@rstudio.com>
Diff between tfdatasets versions 2.7.0 dated 2021-11-09 and 2.9.0 dated 2022-06-29
DESCRIPTION | 8 MD5 | 66 +- NAMESPACE | 7 NEWS.md | 7 R/dataset_methods.R | 182 +++++++ build/vignette.rds |binary inst/doc/feature_columns.html | 520 +++++++++++++------- inst/doc/feature_spec.html | 263 ++++++---- inst/doc/introduction.html | 861 ++++++++++++++++++++-------------- man/as_tensor.tf_dataset.Rd |only man/dataset_batch.Rd | 1 man/dataset_cache.Rd | 1 man/dataset_collect.Rd | 1 man/dataset_concatenate.Rd | 1 man/dataset_decode_delim.Rd | 1 man/dataset_filter.Rd | 1 man/dataset_group_by_window.Rd |only man/dataset_interleave.Rd | 1 man/dataset_map.Rd | 1 man/dataset_map_and_batch.Rd | 1 man/dataset_padded_batch.Rd | 1 man/dataset_prefetch.Rd | 1 man/dataset_prefetch_to_device.Rd | 1 man/dataset_reduce.Rd | 1 man/dataset_repeat.Rd | 1 man/dataset_shuffle.Rd | 1 man/dataset_shuffle_and_repeat.Rd | 1 man/dataset_skip.Rd | 1 man/dataset_snapshot.Rd | 8 man/dataset_take.Rd | 1 man/dataset_take_while.Rd |only man/dataset_unbatch.Rd |only man/dataset_window.Rd | 1 man/reexports.Rd | 6 man/step_embedding_column.Rd | 4 tests/testthat/test-dataset-methods.R | 53 ++ 36 files changed, 1352 insertions(+), 652 deletions(-)
Title: Linear Regressions with a Latent Outcome Variable
Description: Fit latent variable linear models, estimating score distributions for groups of people, following Cohen and Jiang (1999) <doi:10.2307/2669917>. In this model, a latent distribution is conditional on students item response, item characteristics, and conditioning variables the user includes. This latent trait is then integrated out. This software is intended to fit the same models as the existing software 'AM' <https://am.air.org/>. As of version 2, also allows the user to draw plausible values.
Author: Emmanuel Sikali [pdr],
Paul Bailey [aut, cre],
Eric Buehler [aut],
Sun-joo Lee [aut],
Harold Doran [aut],
Claire Kelley [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between Dire versions 2.0.1 dated 2022-04-19 and 2.1.0 dated 2022-06-29
DESCRIPTION | 15 MD5 | 57 NAMESPACE | 108 - R/PV.R | 1036 ++++++++--------- R/RcppExports.R | 74 - R/all.R | 4 R/de.R | 1930 ++++++++++++++++---------------- R/diff.R | 286 ++-- R/helpers.R | 1644 +++++++++++++-------------- R/lnl.R | 932 +++++++-------- R/rr1.R | 302 ++--- R/score.R | 72 - R/zzz.R | 12 build/vignette.rds |binary inst/NEWS.Rd | 47 inst/doc/MML.Rmd | 616 +++++----- inst/doc/MML.pdf |binary man/drawPVs.Rd | 192 +-- man/mml.Rd | 764 ++++++------ src/RcppExports.cpp | 51 src/fastApply2.cpp | 16 src/fastHess.cpp |only src/fastMmlCor.cpp | 1 tests/testthat/test-1-main.R | 722 +++++------ tests/testthat/test-2-composite.R | 370 +++--- tests/testthat/test-3-gpcm.R | 320 ++--- tests/testthat/test-5-primerIntercept.R | 370 +++--- tests/testthat/test-6-primerReg.R | 621 +++++----- tests/testthat_tests.R | 8 vignettes/MML.Rmd | 616 +++++----- 30 files changed, 5707 insertions(+), 5479 deletions(-)
Title: A Dependency Management System for Projects and their R Package
Dependencies
Description: Manage the R packages your project depends
on in an isolated, portable, and reproducible way.
Author: Kevin Ushey, Jonathan McPherson, Joe Cheng, Aron Atkins, JJ Allaire,
Toph Allen
Maintainer: Aron Atkins <aron@rstudio.com>
Diff between packrat versions 0.8.0 dated 2022-05-26 and 0.8.1 dated 2022-06-29
packrat-0.8.0/packrat/man/bitbucket_pwd.Rd |only packrat-0.8.0/packrat/man/bitbucket_user.Rd |only packrat-0.8.0/packrat/man/gitlab_pwd.Rd |only packrat-0.8.0/packrat/man/gitlab_user.Rd |only packrat-0.8.1/packrat/DESCRIPTION | 11 ++-- packrat-0.8.1/packrat/MD5 | 18 ++---- packrat-0.8.1/packrat/R/bitbucket.R | 16 ------ packrat-0.8.1/packrat/R/gitlab.R | 50 ++++--------------- packrat-0.8.1/packrat/R/restore.R | 40 +++++++-------- packrat-0.8.1/packrat/README.md | 1 packrat-0.8.1/packrat/inst/resources/init-rprofile.R | 2 packrat-0.8.1/packrat/inst/resources/init.R | 2 12 files changed, 47 insertions(+), 93 deletions(-)
Title: Embedding and Clustering with Alignment for Spatial Datasets
Description: An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2022) <doi:10.1101/2022.06.26.497672>.
Author: Wei Liu [aut, cre],
Yi Yang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <wei.liu@duke-nus.edu.sg>
Diff between PRECAST versions 1.0 dated 2022-06-22 and 1.1 dated 2022-06-29
PRECAST-1.0/PRECAST/man/ridgePlot.Rd |only PRECAST-1.1/PRECAST/DESCRIPTION | 19 +- PRECAST-1.1/PRECAST/MD5 | 19 +- PRECAST-1.1/PRECAST/NAMESPACE | 8 - PRECAST-1.1/PRECAST/R/Visualization.R | 182 ------------------------- PRECAST-1.1/PRECAST/R/global.R | 10 - PRECAST-1.1/PRECAST/R/main.R | 3 PRECAST-1.1/PRECAST/README.md | 58 +++++++ PRECAST-1.1/PRECAST/inst/doc/PRECAST.Simu.html | 4 PRECAST-1.1/PRECAST/inst/doc/PRECAST.html | 4 PRECAST-1.1/PRECAST/man/doHeatmap.Rd | 2 11 files changed, 81 insertions(+), 228 deletions(-)
Title: Tools to Handle and Publish Metadata as 'Atom' XML Format
Description: Provides tools to read/write/publish metadata based on the 'Atom' XML syndication format. This includes
support of 'Dublin Core' XML implementation, and a client to API(s) implementing the 'AtomPub' 'SWORD' API specification.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between atom4R versions 0.2 dated 2022-04-26 and 0.3 dated 2022-06-29
DESCRIPTION | 13 MD5 | 157 +- NAMESPACE | 8 NEWS.md | 22 R/AtomEntry.R | 3 R/DCElement.R | 238 +++ R/DCEntry.R | 873 ++++++++++++- R/DCMIVocabulary.R | 58 R/readDCEntry.R |only README.md | 2 man/AtomAbstractObject.Rd | 144 +- man/AtomAuthor.Rd | 74 - man/AtomCategory.Rd | 90 - man/AtomContributor.Rd | 74 - man/AtomEntry.Rd | 168 +- man/AtomFeed.Rd | 192 +- man/AtomLink.Rd | 108 - man/AtomNamespace.Rd | 18 man/AtomPerson.Rd | 90 - man/AtomPubClient.Rd | 76 - man/DCAbstract.Rd | 68 - man/DCAccessRights.Rd | 68 - man/DCAccrualMethod.Rd | 68 - man/DCAccrualPeriodicity.Rd | 68 - man/DCAccrualPolicy.Rd | 68 - man/DCAlternative.Rd | 68 - man/DCAudience.Rd | 68 - man/DCAvailable.Rd | 68 - man/DCBibliographicCitation.Rd | 68 - man/DCConformsTo.Rd | 68 - man/DCContributor.Rd | 68 - man/DCCoverage.Rd | 68 - man/DCCreated.Rd | 68 - man/DCCreator.Rd | 68 - man/DCDate.Rd | 68 - man/DCDateAccepted.Rd | 68 - man/DCDateCopyrighted.Rd | 68 - man/DCDateSubmitted.Rd | 68 - man/DCDescription.Rd | 68 - man/DCEducationalLevel.Rd | 68 - man/DCElement.Rd | 78 - man/DCEntry.Rd | 2628 ++++++++++++++++++++++++++++++++++------- man/DCExtent.Rd | 68 - man/DCFormat.Rd | 68 - man/DCHasPart.Rd |only man/DCHasVersion.Rd |only man/DCIdentifier.Rd | 68 - man/DCInstructionalMethod.Rd | 68 - man/DCIsPartOf.Rd |only man/DCIsReferencedBy.Rd |only man/DCIsReplacedBy.Rd |only man/DCIsRequiredBy.Rd |only man/DCIsVersionOf.Rd |only man/DCIssued.Rd | 68 - man/DCLanguage.Rd | 68 - man/DCLicense.Rd | 68 - man/DCMIVocabulary.Rd | 34 man/DCMediator.Rd | 68 - man/DCMedium.Rd | 68 - man/DCModified.Rd | 68 - man/DCProvenance.Rd | 68 - man/DCPublisher.Rd | 68 - man/DCReferences.Rd | 68 - man/DCRelation.Rd | 68 - man/DCReplaces.Rd | 68 - man/DCRequires.Rd | 68 - man/DCRights.Rd | 68 - man/DCRightsHolder.Rd | 68 - man/DCSource.Rd | 68 - man/DCSpatial.Rd | 68 - man/DCSubject.Rd | 68 - man/DCTableOfContents.Rd | 68 - man/DCTemporal.Rd | 68 - man/DCTitle.Rd | 68 - man/DCType.Rd | 68 - man/DCValid.Rd | 68 - man/SwordClient.Rd | 60 man/SwordDataverseClient.Rd | 120 - man/SwordHalClient.Rd | 60 man/SwordServiceDocument.Rd | 52 man/atom4RLogger.Rd | 48 man/getAtomClasses.Rd | 4 man/readDCEntry.Rd |only tests/testthat/test_DCEntry.R | 15 84 files changed, 5711 insertions(+), 2924 deletions(-)
Title: Exhaustive Chemical Enumeration for United Formula Annotation
Description: A pipeline to annotate a number of peaks from the IDSL.IPA peaklists using an exhaustive chemical enumeration-based approach. This package can perform elemental composition calculations using the following 15 elements : C, B, Br, Cl, K, S, Se, Si, N, H, As, F, I, Na, O, and P.
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.UFAx versions 1.3 dated 2022-06-13 and 1.4 dated 2022-06-29
DESCRIPTION | 8 +-- MD5 | 8 +-- R/UFAx_molecular_formula_library_search.R | 5 ++ R/UFAx_workflow.R | 66 +++++++++++++++++------------- man/UFAx_workflow.Rd | 4 - 5 files changed, 53 insertions(+), 38 deletions(-)
Title: Discrete Laplace Mixture Inference using the EM Algorithm
Description: Make inference in a mixture of discrete Laplace distributions using the EM algorithm. This can e.g. be used for modelling the distribution of Y chromosomal haplotypes as described in [1, 2] (refer to the URL section).
Author: Mikkel Meyer Andersen [aut, cre],
Poul Svante Eriksen [aut]
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between disclapmix versions 1.7.3 dated 2019-03-12 and 1.7.4 dated 2022-06-29
DESCRIPTION | 10 MD5 | 41 +- NAMESPACE | 2 NEWS | 17 + R/disclapmix-package.R | 9 R/disclapmix.R | 54 +++ R/disclapmix_adaptive.R |only R/disclapmix_robust.R |only build/vignette.rds |binary inst/doc/introduction.R | 41 ++ inst/doc/introduction.Rmd | 47 +++ inst/doc/introduction.html | 543 ++++++++++++++++++++++++++++++-------- inst/doc/mixtures.R | 18 - inst/doc/mixtures.html | 434 +++++++++++++++++++++++++----- man/danes.Rd | 6 man/disclapmix-package.Rd |only man/disclapmix.Rd | 39 +- man/disclapmix_adaptive.Rd |only man/disclapmix_robust.Rd |only man/plot.disclapmixfit.Rd | 3 man/plot.ranked_contrib_pairs.Rd | 3 man/print.ranked_contrib_pairs.Rd | 3 src/RcppExports.cpp | 5 vignettes/introduction.Rmd | 47 +++ 24 files changed, 1067 insertions(+), 255 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft Sql Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Apache Spark', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.9.0 dated 2022-02-18 and 1.9.1 dated 2022-06-29
DESCRIPTION | 12 MD5 | 37 +- NEWS.md | 14 R/HelperFunctions.R | 65 ++++ R/RenderSql.R | 29 +- R/ShinyApps.R | 4 R/SparkSql.R | 4 build/vignette.rds |binary inst/csv/jarChecksum.txt | 2 inst/csv/replacementPatterns.csv | 5 inst/csv/supportedDialects.csv | 2 inst/doc/UsingSqlRender.pdf |binary inst/java/SqlRender.jar |binary man/camelCaseToSnakeCaseNames.Rd | 44 +-- man/render.Rd | 2 man/snakeCaseToCamelCaseNames.Rd | 44 +-- man/translate.Rd | 2 tests/testthat/test-translate-bigquery.R | 12 tests/testthat/test-translate-oracle.R |only tests/testthat/test-translateSql.R | 445 ------------------------------- 20 files changed, 201 insertions(+), 522 deletions(-)
Title: Interface to 'D4Science' 'StorageHub' API
Description: Provides an interface to 'D4Science' 'StorageHub' API (<https://dev.d4science.org/>). Allows to get user profile, and perform
actions over the 'StorageHub' (workspace) including creation of folders, files management (upload/update/deletion/sharing), and listing of
stored resources.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between d4storagehub4R versions 0.3 dated 2022-05-02 and 0.4 dated 2022-06-29
DESCRIPTION | 10 - MD5 | 14 - NEWS.md | 16 + R/StoragehubManager.R | 285 +++++++++++++++++++++--------- README.md | 4 man/StoragehubManager.Rd | 367 ++++++++++++++++++++++++--------------- man/d4storagehub4RLogger.Rd | 48 ++--- tests/testthat/test_storagehub.R | 4 8 files changed, 487 insertions(+), 261 deletions(-)
More information about d4storagehub4R at CRAN
Permanent link
Title: Imagine Your Data Before You Collect It
Description: Helps you imagine your data before you collect it. Hierarchical data structures
and correlated data can be easily simulated, either from random number generators or
by resampling from existing data sources. This package is faster with 'data.table' and
'mvnfast' installed.
Author: Graeme Blair [aut, cre] ,
Jasper Cooper [aut] ,
Alexander Coppock [aut] ,
Macartan Humphreys [aut] ,
Aaron Rudkin [aut],
Neal Fultz [aut],
David C. Hall [ctb]
Maintainer: Graeme Blair <graeme.blair@gmail.com>
Diff between fabricatr versions 0.16.0 dated 2022-02-11 and 1.0.0 dated 2022-06-29
DESCRIPTION | 32 +++++++++++++++++--------------- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/variable_creation_functions.R | 12 +++++++----- man/draw_discrete.Rd | 4 ++-- tests/testthat/test-variables.R | 17 +++++++++++++++-- 6 files changed, 52 insertions(+), 29 deletions(-)
Title: Balanced and Spatially Balanced Sampling
Description: Select balanced and spatially balanced probability samples in multi-dimensional spaces
with any prescribed inclusion probabilities. It contains fast (C++ via Rcpp) implementations of
the included sampling methods. The local pivotal method by Grafström, Lundström and Schelin (2012)
<doi:10.1111/j.1541-0420.2011.01699.x> and spatially correlated Poisson sampling by Grafström (2012)
<doi:10.1016/j.jspi.2011.07.003> are included. Also the cube method (for balanced sampling) and
the local cube method (for doubly balanced sampling) are included, see Grafström and Tillé (2013)
<doi:10.1002/env.2194>.
Author: Anton Grafstroem, Jonathan Lisic, Wilmer Prentius
Maintainer: Anton Grafstroem <anton.grafstrom@gmail.com>
Diff between BalancedSampling versions 1.5.5 dated 2019-03-01 and 1.6.3 dated 2022-06-29
BalancedSampling-1.5.5/BalancedSampling/man/flightphase.rd |only BalancedSampling-1.6.3/BalancedSampling/DESCRIPTION | 20 +- BalancedSampling-1.6.3/BalancedSampling/MD5 | 17 +- BalancedSampling-1.6.3/BalancedSampling/R/RcppExports.R | 8 + BalancedSampling-1.6.3/BalancedSampling/man/BalancedSampling-package.Rd | 6 BalancedSampling-1.6.3/BalancedSampling/man/flightphase.Rd |only BalancedSampling-1.6.3/BalancedSampling/man/lcps.Rd |only BalancedSampling-1.6.3/BalancedSampling/man/scps_getrand.Rd |only BalancedSampling-1.6.3/BalancedSampling/src/RcppExports.cpp | 27 +++ BalancedSampling-1.6.3/BalancedSampling/src/cube.cpp | 55 +++++++ BalancedSampling-1.6.3/BalancedSampling/src/lcps.cpp |only BalancedSampling-1.6.3/BalancedSampling/src/scps.cpp | 70 ++++++++++ 12 files changed, 179 insertions(+), 24 deletions(-)
More information about BalancedSampling at CRAN
Permanent link
Title: Stepwise Predictive Variable Selection for Random Forest
Description: An introduction to several novel predictive variable selection methods for random forest. They are based on various variable importance methods (i.e., averaged variable importance (AVI), and knowledge informed AVI (i.e., KIAVI, and KIAVI2)) and predictive accuracy in stepwise algorithms. For details of the variable selection methods, please see: Li, J., Siwabessy, J., Huang, Z. and Nichol, S. (2019) <doi:10.3390/geosciences9040180>. Li, J., Alvarez, B., Siwabessy, J., Tran, M., Huang, Z., Przeslawski, R., Radke, L., Howard, F., Nichol, S. (2017). <DOI: 10.13140/RG.2.2.27686.22085>.
Author: Jin Li [aut, cre]
Maintainer: Jin Li <jinli68@gmail.com>
Diff between steprf versions 1.0.1 dated 2022-06-17 and 1.0.2 dated 2022-06-29
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/steprf.R | 5 ++++- R/steprfAVI.R | 5 ++++- R/steprfAVI1.R | 7 ++++--- R/steprfAVI2.R | 5 ++++- R/steprfAVIPredictors.R | 5 ++++- man/steprf.Rd | 3 +++ man/steprfAVI.Rd | 3 +++ man/steprfAVI1.Rd | 5 +++-- man/steprfAVI2.Rd | 3 +++ man/steprfAVIPredictors.Rd | 3 +++ 12 files changed, 50 insertions(+), 24 deletions(-)
Title: Estimation and Use of the Generalised (Tukey) Lambda
Distribution
Description: The generalised lambda distribution, or Tukey lambda distribution,
provides a wide variety of shapes with one functional form.
This package provides random numbers, quantiles, probabilities,
densities and density quantiles for four different types of the distribution,
the FKML (Freimer et al 1988), RS (Ramberg and Schmeiser 1974), GPD (van Staden
and Loots 2009) and FM5 - see documentation for details.
It provides the density function, distribution function, and Quantile-Quantile
plots.
It implements a variety of estimation methods for the distribution,
including diagnostic plots.
Estimation methods include the starship (all 4 types),
method of L-Moments for the GPD and FKML types, and a
number of methods for only the FKML type.
These include maximum likelihood, maximum product of spacings,
Titterington's method, Moments, Trimmed L-Moments and
Distributional Least Absolutes.
Author: Robert King [aut, cre] ,
Benjamin Dean [aut],
Sigbert Klinke [aut],
Paul van Staden [aut]
Maintainer: Robert King <Robert.King.Newcastle@gmail.com>
Diff between gld versions 2.6.4 dated 2021-12-16 and 2.6.5 dated 2022-06-29
Changelog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- build/partial.rdb |binary man/GeneralisedLambdaDistribution.Rd | 5 +++-- man/fit.gpd.Rd | 8 ++++---- man/gl.check.lambda.Rd | 2 +- man/plotgl.Rd | 2 +- man/qqgl.Rd | 2 +- man/starship.adaptivegrid.Rd | 6 +++--- man/starship.obj.Rd | 2 +- 11 files changed, 31 insertions(+), 27 deletions(-)
Title: Locate Errors with Validation Rules
Description: Errors in data can be located and removed using validation rules from package
'validate'. See also Van der Loo and De Jonge (2018) <doi:10.1002/9781118897126>,
chapter 7.
Author: Edwin de Jonge [aut, cre] ,
Mark van der Loo [aut]
Maintainer: Edwin de Jonge <edwindjonge@gmail.com>
Diff between errorlocate versions 1.0.0 dated 2022-03-31 and 1.1 dated 2022-06-29
DESCRIPTION | 8 MD5 | 35 +-- NAMESPACE | 1 NEWS.md | 6 R/conditional.R | 8 R/dnf.R | 58 +++++ R/errorlocalizer.R | 3 R/expr_manip.R | 35 +++ R/linear.R | 3 R/utils.R | 1 build/vignette.rds |binary inst/doc/errorlocate.html | 278 ++++++++++++++++++++++++++-- inst/doc/inspect_mip.html | 351 +++++++++++++++++++++++++++++++----- tests/testthat/test-AND.R |only tests/testthat/test-dnf.R | 30 +++ tests/testthat/test-expr-manip.R | 21 ++ tests/testthat/test-linear.R | 11 + tests/testthat/test-locate_errors.R | 25 ++ tests/testthat/test-miprule.R | 8 19 files changed, 789 insertions(+), 93 deletions(-)
Title: Educational Assessment Tools for Replication Methods
Description: Replication methods to compute some basic statistic operations (means, standard deviations,
frequency tables, percentiles and generalized linear models) in complex survey designs comprising multiple
imputed variables and/or a clustered sampling structure which both deserve special procedures at least in
estimating standard errors. See the package documentation for a more detailed description along with references.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Benjamin Becker [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatRep versions 0.14.3 dated 2022-05-14 and 0.14.4 dated 2022-06-29
DESCRIPTION | 10 - MD5 | 16 +- NAMESPACE | 1 NEWS.md | 9 - R/2_doTrends.r | 2 R/jk2.R | 303 ++++++++++++++++++++++------------------ man/eatRep-package.rd | 4 man/repMean.Rd | 4 tests/testthat/test_jk2_table.R | 2 9 files changed, 197 insertions(+), 154 deletions(-)
Title: Quantify the Relationship Between Development Rate and
Temperature in Ectotherms
Description: A set of functions to quantify the relationship between development
rate and temperature and to build phenological models. The package comprises
a set of models and estimated parameters borrowed from a literature review
in ectotherms. The methods and literature review are described in Rebaudo
et al. (2018) <doi:10.1111/2041-210X.12935>, Rebaudo and Rabhi (2018)
<doi:10.1111/eea.12693>, and Regnier et al. (2021) <doi:10.1093/ee/nvab115>.
An example can be found in Rebaudo et al. (2017)
<doi:10.1007/s13355-017-0480-5>.
Author: Francois Rebaudo [aut, cre] ,
Baptiste Regnier [aut] ,
Camila Benavides [ctb] ,
Tanusson Selvarajah [ctb] ,
Nicolas Bonnal [ctb] ,
Badre Rabhi [ctb] ,
Quentin Struelens [ctb]
Maintainer: Francois Rebaudo <francois.rebaudo@ird.fr>
Diff between devRate versions 0.2.1 dated 2020-11-06 and 0.2.2 dated 2022-06-29
DESCRIPTION | 20 MD5 | 256 +- NAMESPACE | 36 NEWS.md | 155 - R/data.R | 2352 +++++++++++----------- R/data_example.R | 108 - R/devRate.R | 96 R/devRate_find.R | 124 - R/devRate_fitAll.R | 222 -- R/devRate_info.R | 756 +++---- R/devRate_lifetraits.R |only R/devRate_map.R | 48 R/devRate_nls.R | 650 +++--- R/devRate_pheno.R | 306 +- R/devRate_phenoBDD.R | 526 ++--- R/devRate_plot.R | 368 +-- R/devRate_qualityFits.R | 411 ++- README.md | 169 - build/partial.rdb |only build/vignette.rds |binary data/analytis_77.RData |binary data/bayoh_03.RData |binary data/beta_16.RData |binary data/beta_95.RData |binary data/bieri1_83.RData |binary data/briere1_99.RData |binary data/briere2_99.RData |binary data/campbell_74.RData |binary data/damos_08.RData |binary data/damos_11.RData |binary data/davidson_44.RData |binary data/devRateEqList.RData |binary data/harcourtYee_82.RData |binary data/hilbertLogan_83.RData |binary data/janisch_32.RData |binary data/kontodimas_04.RData |binary data/lactin1_95.RData |binary data/lactin2_95.RData |binary data/lamb_92.RData |binary data/logan10_76.RData |binary data/logan6_76.RData |binary data/perf2_11.RData |binary data/poly2.RData |binary data/poly4.RData |binary data/ratkowsky_82.RData |binary data/ratkowsky_83.RData |binary data/regniere_12.RData |binary data/rootsq_82.RData |binary data/schoolfieldHigh_81.RData |binary data/schoolfieldLow_81.RData |binary data/schoolfield_81.RData |binary data/sharpeDeMichele_77.RData |binary data/shi_11.RData |binary data/stinner_74.RData |binary data/taylor_81.RData |binary data/wagner_88.RData |binary data/wang_82.RData |binary data/wangengel_98.RData |binary inst/CITATION | 18 inst/doc/guiaDelUsuario.R | 372 +-- inst/doc/guiaDelUsuario.Rmd | 1340 ++++++------ inst/doc/guiaDelUsuario.html | 1933 +++++++++++------- inst/doc/modelEvaluation.R | 602 ++--- inst/doc/modelEvaluation.Rmd | 1056 +++++----- inst/doc/modelEvaluation.html | 2691 +++++++++++++------------- inst/doc/quickUserGuide.R | 366 +-- inst/doc/quickUserGuide.Rmd | 662 +++--- inst/doc/quickUserGuide.html | 2505 ++++++++++++------------ man/analytis_77.Rd | 76 man/bayoh_03.Rd | 78 man/beta_16.Rd | 92 man/beta_95.Rd | 78 man/bieri1_83.Rd | 88 man/briere1_99.Rd | 78 man/briere2_99.Rd | 78 man/campbell_74.Rd | 70 man/dRGetMetrics.Rd |only man/dRGetMetricsInfo.Rd |only man/damos_08.Rd | 78 man/damos_11.Rd | 76 man/davidson_44.Rd | 74 man/devRateEqList.Rd | 32 man/devRateEqStartVal.Rd | 32 man/devRateInfo.Rd | 46 man/devRateModel.Rd | 164 - man/devRateModelAll.Rd | 119 - man/devRatePlot.Rd | 74 man/devRatePrint.Rd | 80 man/devRateQlBio.Rd | 108 - man/devRateQlStat.Rd | 96 man/exTropicalMoth.Rd | 86 man/harcourtYee_82.Rd | 76 man/hilbertLogan_83.Rd | 80 man/janisch_32.Rd | 102 man/kontodimas_04.Rd | 82 man/lactin1_95.Rd | 76 man/lactin2_95.Rd | 76 man/lamb_92.Rd | 94 man/logan10_76.Rd | 78 man/logan6_76.Rd | 80 man/perf2_11.Rd | 92 man/poly2.Rd | 68 man/poly4.Rd | 68 man/ratkowsky_82.Rd | 100 man/ratkowsky_83.Rd | 98 man/regniere_12.Rd | 80 man/rootsq_82.Rd | 76 man/schoolfieldHigh_81.Rd | 98 man/schoolfieldLow_81.Rd | 98 man/schoolfield_81.Rd | 90 man/sharpeDeMichele_77.Rd | 76 man/shi_11.Rd | 78 man/stinner_74.Rd | 84 man/taylor_81.Rd | 80 man/wagner_88.Rd | 92 man/wang_82.Rd | 74 man/wangengel_98.Rd | 76 tests/testthat.R | 20 tests/testthat/test_devRateModel.R | 1074 +++++----- tests/testthat/test_devRateModel_algoLM.R | 1212 +++++------ tests/testthat/test_devRate_devRateModelAll.R | 15 tests/testthat/test_devRate_find.R | 46 tests/testthat/test_devRate_forRstudioUsers.R | 18 tests/testthat/test_devRate_info.R | 70 tests/testthat/test_devRate_nls.R | 190 - tests/testthat/test_devRate_plot.R | 330 +-- tests/testthat/test_devRate_qualityFits.R | 276 +- tests/testthat/test_devRate_tpc.R | 46 vignettes/guiaDelUsuario.Rmd | 1340 ++++++------ vignettes/modelEvaluation.Rmd | 1056 +++++----- vignettes/quickUserGuide.Rmd | 662 +++--- 131 files changed, 14529 insertions(+), 13849 deletions(-)
Title: 'GeoNetwork' API R Interface
Description: Provides an R interface to the 'GeoNetwork' API (<https://geonetwork-opensource.org/#api>) allowing to upload and publish metadata in a 'GeoNetwork' web-application and expose it to OGC CSW.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between geonapi versions 0.5-3 dated 2022-02-21 and 0.6 dated 2022-06-29
DESCRIPTION | 10 +- MD5 | 23 +++--- NEWS.md |only R/GNOpenAPIManager.R | 69 ++++++++++++++++++++ README.md | 4 - man/GNAbstractManager.Rd | 60 ++++++++--------- man/GNLegacyAPIManager.Rd | 120 +++++++++++++++++------------------ man/GNManager.Rd | 40 +++++------ man/GNOpenAPIManager.Rd | 153 ++++++++++++++++++++++++++++++--------------- man/GNPrivConfiguration.Rd | 32 ++++----- man/GNRESTRequest.Rd | 24 +++---- man/GNUtils.Rd | 6 - man/GNVersion.Rd | 30 ++++---- 13 files changed, 347 insertions(+), 224 deletions(-)
Title: Cluster Wild Bootstrapping for Meta-Analysis
Description: Conducts single coefficient tests and multiple-contrast hypothesis tests of meta-regression models using cluster wild bootstrapping, based on methods examined in Joshi, Pustejovsky, and Beretvas (2022) <DOI:10.1002/jrsm.1554>.
Author: Megha Joshi [aut, cre] ,
James Pustejovsky [aut] ,
Sangdon Lim [ctb] ,
Pierce Cappelli [ctb]
Maintainer: Megha Joshi <megha.j456@gmail.com>
Diff between wildmeta versions 0.1.0 dated 2022-02-02 and 0.2.0 dated 2022-06-29
DESCRIPTION | 11 MD5 | 41 +- NAMESPACE | 2 NEWS.md | 4 R/S3_methods.R | 9 R/Wald_test_wildmeta.R | 22 - R/plot_wildmeta.R | 2 R/rma-mv.R | 65 +++ R/robu.R | 30 + R/run_cwb.R | 92 +++- README.md | 34 + inst/doc/cwbmeta.R | 47 ++ inst/doc/cwbmeta.Rmd | 62 ++- inst/doc/cwbmeta.html | 638 ++++++++++++++++++++++++++++------ man/Wald_test_cwb.Rd | 23 - man/plot.Wald_test_wildmeta.Rd | 2 man/run_cwb.Rd | 53 +- tests/testthat/test-parallelization.R |only tests/testthat/test-plot_wildmeta.R | 6 tests/testthat/test-rma-mv-methods.R | 65 +++ vignettes/cwbmeta.Rmd | 62 ++- vignettes/references.bib | 16 22 files changed, 1050 insertions(+), 236 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-12 1.0.8
2020-10-08 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-04 3.3.1
2021-01-27 3.3.0
2020-11-09 3.2.7
2019-09-27 3.2.5
2019-06-21 3.2.4
2019-02-21 3.2.2
2018-11-12 3.2.0
2018-06-12 3.1.1
2018-06-05 3.1.0
2018-01-30 3.0.0
2016-06-13 2.2.0
2015-12-21 2.1.1
2015-12-14 2.1.0
2015-09-01 2.0.0
2014-07-03 1.0.2
2014-06-19 1.0.1
Title: Argument Table Generation for Sensitivity Analysis
Description: Simplified scenario testing and sensitivity analysis,
redesigned to use packages 'future' and 'furrr'. Provides
functions for generating function argument sets using
one-factor-at-a-time (OFAT) and (sampled) permutations.
Author: Michael C Koohafkan [aut, cre]
Maintainer: Michael C Koohafkan <michael.koohafkan@gmail.com>
Diff between reval versions 3.0-0 dated 2021-06-27 and 3.1-0 dated 2022-06-29
reval-3.0-0/reval/R/compatibility.r |only reval-3.0-0/reval/R/reexports.r |only reval-3.0-0/reval/man/evalmany.Rd |only reval-3.0-0/reval/man/reexports.Rd |only reval-3.1-0/reval/DESCRIPTION | 15 ++++---- reval-3.1-0/reval/MD5 | 22 +++++------- reval-3.1-0/reval/NAMESPACE | 20 ----------- reval-3.1-0/reval/R/args.r | 50 ++++++++++++++--------------- reval-3.1-0/reval/build/vignette.rds |binary reval-3.1-0/reval/inst/doc/quickstart.R | 21 +++++++----- reval-3.1-0/reval/inst/doc/quickstart.Rmd | 38 ++++++++++++---------- reval-3.1-0/reval/inst/doc/quickstart.html | 27 +++++++++------ reval-3.1-0/reval/man/args_set.Rd | 2 - reval-3.1-0/reval/vignettes/quickstart.Rmd | 38 ++++++++++++---------- 14 files changed, 113 insertions(+), 120 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 0.11.1 dated 2022-06-11 and 1.0.0 dated 2022-06-29
DESCRIPTION | 29 +++--- MD5 | 69 ++++++++-------- NEWS.md | 13 +++ R/datasummary.R | 9 +- R/datasummary_balance.R | 10 +- R/datasummary_correlation.R | 9 +- R/datasummary_crosstab.R | 9 +- R/datasummary_df.R | 1 R/datasummary_skim.R | 6 - R/format_msg.R |only R/get_estimates.R | 85 ++++++++++++-------- R/get_gof.R | 104 ++++++++++++------------ R/gof_map.R | 52 +++++++----- R/methods_fixest.R | 4 R/modelplot.R | 1 R/modelsummary.R | 4 R/sanitize_gof_map.R | 16 ++- build/modelsummary.pdf |binary inst/CITATION |only inst/WORDLIST | 123 +++++++++++++---------------- man/datasummary.Rd | 15 ++- man/datasummary_balance.Rd | 15 ++- man/datasummary_correlation.Rd | 15 ++- man/datasummary_crosstab.Rd | 15 ++- man/datasummary_df.Rd | 3 man/datasummary_skim.Rd | 12 ++ man/dsummary.Rd | 15 ++- man/modelplot.Rd | 3 man/modelsummary.Rd | 7 + man/msummary.Rd | 7 + tests/testthat/_snaps/rounding.md | 11 ++ tests/testthat/test-aaa.R | 6 - tests/testthat/test-pkg-lavaan.R |only tests/testthat/test-pkg-lme4.R | 26 +++++- tests/testthat/test-rounding.R | 1 tests/testthat/test-zzz-modelsummary_get.R | 2 tests/testthat/test-zzz.R | 3 37 files changed, 420 insertions(+), 280 deletions(-)
Title: ARDL, ECM and Bounds-Test for Cointegration
Description: Creates complex autoregressive distributed lag (ARDL) models and
constructs the underlying unrestricted and restricted error correction
model (ECM) automatically, just by providing the order. It also performs
the bounds-test for cointegration as described in Pesaran et al. (2001)
<doi:10.1002/jae.616> and provides the multipliers and the cointegrating
equation. The validity and the accuracy of this package have been verified
by successfully replicating the results of Pesaran et al. (2001) in
Natsiopoulos and Tzeremes (2022) <doi:10.1002/jae.2919>.
Author: Kleanthis Natsiopoulos [aut, cre]
,
Nickolaos Tzeremes [aut]
Maintainer: Kleanthis Natsiopoulos <klnatsio@gmail.com>
Diff between ARDL versions 0.1.1 dated 2021-01-10 and 0.2.0 dated 2022-06-29
DESCRIPTION | 21 - MD5 | 31 - NEWS.md | 84 ++-- R/ardl-package.R | 50 +- R/ardl.R | 262 +++++++-------- R/coint_eq.R | 334 +++++++++---------- R/crit_val_bounds_sim.R | 656 +++++++++++++++++++-------------------- R/delta_method.R | 204 ++++++------ R/formula_builders.R | 462 +++++++++++++-------------- R/parsers.R | 538 +++++++++++++++---------------- R/recm.R | 304 +++++++++--------- R/uecm.R | 236 +++++++------- README.md | 48 +- build |only inst/CITATION | 24 + man/ARDL-package.Rd | 8 man/figures/README-lr-plot-1.png |binary 17 files changed, 1648 insertions(+), 1614 deletions(-)