Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.1.2 dated 2021-06-16 and 3.2.0 dated 2022-06-30
Cyclops-3.1.2/Cyclops/man/printCyclopsRowIds.Rd |only Cyclops-3.2.0/Cyclops/DESCRIPTION | 8 Cyclops-3.2.0/Cyclops/MD5 | 85 +- Cyclops-3.2.0/Cyclops/NEWS.md | 9 Cyclops-3.2.0/Cyclops/R/DataManagement.R | 6 Cyclops-3.2.0/Cyclops/R/ModelFit.R | 70 +- Cyclops-3.2.0/Cyclops/R/NewDataConversion.R | 5 Cyclops-3.2.0/Cyclops/R/ParameterizedPrior.R | 6 Cyclops-3.2.0/Cyclops/R/RcppExports.R | 20 Cyclops-3.2.0/Cyclops/R/Simulation.R | 123 +-- Cyclops-3.2.0/Cyclops/README.md | 9 Cyclops-3.2.0/Cyclops/man/fitCyclopsModel.Rd | 3 Cyclops-3.2.0/Cyclops/src/RcppCyclopsInterface.cpp | 35 - Cyclops-3.2.0/Cyclops/src/RcppCyclopsInterface.h | 2 Cyclops-3.2.0/Cyclops/src/RcppExports.cpp | 42 - Cyclops-3.2.0/Cyclops/src/RcppModelData.cpp | 28 Cyclops-3.2.0/Cyclops/src/cyclops/CcdInterface.cpp | 2 Cyclops-3.2.0/Cyclops/src/cyclops/CyclicCoordinateDescent.cpp | 349 +++++----- Cyclops-3.2.0/Cyclops/src/cyclops/CyclicCoordinateDescent.h | 4 Cyclops-3.2.0/Cyclops/src/cyclops/Types.h | 6 Cyclops-3.2.0/Cyclops/src/cyclops/engine/AbstractModelSpecifics.h | 2 Cyclops-3.2.0/Cyclops/src/cyclops/engine/ModelSpecifics.h | 91 ++ Cyclops-3.2.0/Cyclops/src/cyclops/engine/ModelSpecifics.hpp | 142 ++++ Cyclops-3.2.0/Cyclops/src/cyclops/io/OutputWriter.h | 1 Cyclops-3.2.0/Cyclops/src/cyclops/priors/CovariatePrior.cpp | 28 Cyclops-3.2.0/Cyclops/src/cyclops/priors/CovariatePrior.h | 72 +- Cyclops-3.2.0/Cyclops/src/cyclops/priors/JointPrior.h | 26 Cyclops-3.2.0/Cyclops/src/cyclops/priors/NewCovariatePrior.h | 7 Cyclops-3.2.0/Cyclops/tests/testthat/test-RcppDataModel.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-covariateRegularization.R | 10 Cyclops-3.2.0/Cyclops/tests/testthat/test-cv.R | 4 Cyclops-3.2.0/Cyclops/tests/testthat/test-fastBarUpdate.R | 2 Cyclops-3.2.0/Cyclops/tests/testthat/test-finiteMLE.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-int64.R | 12 Cyclops-3.2.0/Cyclops/tests/testthat/test-multitypePoisson.R | 8 Cyclops-3.2.0/Cyclops/tests/testthat/test-parameterizedPriors.R | 29 Cyclops-3.2.0/Cyclops/tests/testthat/test-profileLikelihood.R | 22 Cyclops-3.2.0/Cyclops/tests/testthat/test-simulation.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-smallBernoulli.R | 26 Cyclops-3.2.0/Cyclops/tests/testthat/test-smallCox.R | 14 Cyclops-3.2.0/Cyclops/tests/testthat/test-smallFineGray.R | 4 Cyclops-3.2.0/Cyclops/tests/testthat/test-smallMM.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-smallNormal.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-smallPoisson.R | 69 + Cyclops-3.2.0/Cyclops/tests/testthat/test-sorting.R |only Cyclops-3.2.0/Cyclops/tests/testthat/test-weighted_cv.R | 2 Cyclops-3.2.0/Cyclops/tests/testthat/test-weighting.R | 10 47 files changed, 967 insertions(+), 426 deletions(-)
Title: The Generalized Semi-Supervised Elastic-Net
Description: Implements the generalized semi-supervised elastic-net. This method extends the supervised elastic-net problem, and thus it is a practical solution to the problem of feature selection in semi-supervised contexts. Its mathematical formulation is presented from a general perspective, covering a wide range of models. We focus on linear and logistic responses, but the implementation could be easily extended to other losses in generalized linear models. We develop a flexible and fast implementation, written in 'C++' using 'RcppArmadillo' and integrated into R via 'Rcpp' modules. See Culp, M. 2013 <doi:10.1080/10618600.2012.657139> for references on the Joint Trained Elastic-Net.
Author: Juan C. Laria [aut, cre] ,
Line H. Clemmensen [aut]
Maintainer: Juan C. Laria <juank.laria@gmail.com>
Diff between s2net versions 1.0.1 dated 2020-01-16 and 1.0.4 dated 2022-06-30
DESCRIPTION | 9 - MD5 | 29 ++- R/extJT.R | 6 R/predict_Rcpp_s2net.R | 2 R/s2Data.R | 2 README.md | 33 +--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/supervised.html | 334 +++++++++++---------------------------------- inst/rstudio |only man/data_auto_mpg.Rd | 2 man/figures/s2net-deck.jpg |only man/s2netRcpp-package.Rd | 2 man/simulate_extra.Rd | 2 man/simulate_groups.Rd | 2 src/RcppExports.cpp | 5 16 files changed, 133 insertions(+), 295 deletions(-)
Title: PRO-CTCAE Scoring, Analysis, and Graphical Tools
Description: A collection of tools to facilitate standardized analysis
and graphical procedures when using the National Cancer Institute’s
Patient-Reported Outcomes version of the Common Terminology Criteria for
Adverse Events (PRO-CTCAE).
Author: Blake Langlais [aut, cre],
Brie Noble [ctb],
Molly Klanderman [ctb],
Amylou Dueck [aut]
Maintainer: Blake Langlais <langlais.blake@mayo.edu>
Diff between ProAE versions 0.2.9 dated 2022-05-31 and 0.2.10 dated 2022-06-30
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- R/toxAUC.R | 7 +++++-- R/toxSummary.R | 6 ++++-- inst/CITATION | 4 ++-- man/toxAUC.Rd | 2 +- 6 files changed, 24 insertions(+), 18 deletions(-)
Title: Building and Estimating Structural Equation Models
Description: A powerful, easy to syntax for specifying and estimating complex
Structural Equation Models. Models can be estimated using Partial
Least Squares Path Modeling or Covariance-Based Structural Equation
Modeling or covariance based Confirmatory Factor Analysis. Methods described in Ray, Danks, and Valdez (2021).
Author: Soumya Ray [aut, ths],
Nicholas Patrick Danks [aut, cre],
Andre Calero Valdez [aut],
Juan Manuel Velasquez Estrada [ctb],
James Uanhoro [ctb],
Johannes Nakayama [ctb],
Lilian Koyan [ctb],
Laura Burbach [ctb],
Arturo Heynar Cano Bejar [ctb],
Susanne A [...truncated...]
Maintainer: Nicholas Patrick Danks <nicholasdanks@hotmail.com>
Diff between seminr versions 2.3.0 dated 2022-01-04 and 2.3.1 dated 2022-06-30
DESCRIPTION | 10 MD5 | 99 - NAMESPACE | 2 R/boot_utils.R |only R/compute_safe.R |only R/estimate_bootstrap.R | 400 ++-- R/estimate_cbsem.R | 40 R/estimate_factor_scores.R | 4 R/estimate_pls.R | 14 R/estimate_pls_mga.R | 15 R/estimate_simplePLS.R | 10 R/evaluate_measurement_model.R | 24 R/evaluate_reliability.R | 38 R/evaluate_validity.R | 37 R/feature_consistent.R | 4 R/feature_higher_order.R | 41 R/feature_plspredict.R | 20 R/inspect_mmMatrix.R | 14 R/library.R | 74 R/plot_dot.R | 43 R/report_descriptives.R | 2 R/report_lavaan.R | 14 R/specify_constructs.R | 8 build/vignette.rds |binary demo/seminr-pls-ecsi.R | 18 inst/doc/SEMinR.Rmd | 2 inst/doc/SEMinR.html | 877 +++++++--- man/boot_paths_df.Rd |only man/rho_A.Rd | 6 man/standardize_safely.Rd |only man/unit_weights.Rd |only tests/fixtures/V_3_6_0/cbsem-interaction-2stage-factor_scores.csv | 500 ++--- tests/fixtures/V_3_6_0/cbsem-interaction-2stage-paths-coefficients.csv | 10 tests/fixtures/V_3_6_0/cbsem-interaction-2stage-quality-reliability.csv | 6 tests/fixtures/V_3_6_0/cbsem-interaction-pi-factor_scores.csv | 500 ++--- tests/fixtures/V_3_6_0/item_cors.csv | 39 tests/fixtures/V_3_6_0/item_stats.csv | 37 tests/fixtures/V_3_6_0/loadings3.csv |only tests/fixtures/V_3_6_0/missing_cases_item_descriptives.csv | 81 tests/fixtures/V_3_6_0/plsc-interaction-reliability.csv | 8 tests/fixtures/V_3_6_0/weights3.csv |only tests/testthat/test-cbsem-higher-order.R | 69 tests/testthat/test-cbsem-interactions.R | 2 tests/testthat/test-cbsem.R | 7 tests/testthat/test-consistent.R | 4 tests/testthat/test-descriptive-stats.R | 8 tests/testthat/test-measure.r | 47 tests/testthat/test-plot-basics.R | 2 tests/testthat/test-plot-bootstrapped.R | 1 tests/testthat/test-plot-hoc-2stage-interaction.R | 2 tests/testthat/test-plot-hoc.R | 34 tests/testthat/test-pls-mga.R | 1 tests/testthat/test-summary-cbsem.R | 5 vignettes/SEMinR.Rmd | 2 54 files changed, 2001 insertions(+), 1180 deletions(-)
Title: Access the 'Quickbase' JSON API
Description: Programmatically access the 'Quickbase' JSON API <https://developer.quickbase.com>.
You supply parameters for an API call, 'qbr' delivers an http request to the
API endpoint and returns its response. Outputs follow 'tidyverse' philosophy.
Author: John Erdmann [aut, cre],
Keene State College [cph, fnd]
Maintainer: John Erdmann <john.erdmann@keene.edu>
Diff between qbr versions 1.0.0 dated 2022-05-18 and 1.1.0 dated 2022-06-30
qbr-1.0.0/qbr/R/qb_run.R |only qbr-1.1.0/qbr/DESCRIPTION | 6 - qbr-1.1.0/qbr/MD5 | 25 +++++-- qbr-1.1.0/qbr/NAMESPACE | 10 +++ qbr-1.1.0/qbr/NEWS.md | 17 ++++- qbr-1.1.0/qbr/R/qb_apps.R |only qbr-1.1.0/qbr/R/qb_reports.R |only qbr-1.1.0/qbr/R/qb_users.R |only qbr-1.1.0/qbr/R/qb_usertoken.R |only qbr-1.1.0/qbr/README.md | 109 +++++++++++++++++++++++++++++++--- qbr-1.1.0/qbr/man/clone_token.Rd |only qbr-1.1.0/qbr/man/copy_app.Rd |only qbr-1.1.0/qbr/man/deactivate_token.Rd |only qbr-1.1.0/qbr/man/delete_app.Rd |only qbr-1.1.0/qbr/man/delete_token.Rd |only qbr-1.1.0/qbr/man/get_app_events.Rd |only qbr-1.1.0/qbr/man/get_report.Rd |only qbr-1.1.0/qbr/man/get_reports.Rd |only qbr-1.1.0/qbr/man/get_users.Rd |only qbr-1.1.0/qbr/man/qb_run.Rd | 32 ++++----- qbr-1.1.0/qbr/man/run_report.Rd |only 21 files changed, 165 insertions(+), 34 deletions(-)
Title: Algebraic Tools for the Analysis of Multiple Social Networks
Description: Algebraic procedures for the analysis of multiple social networks are delivered with this
package as described in Ostoic (2020) <DOI:10.18637/jss.v092.i11>. Among other things, it
makes it possible to create and manipulate multiplex, multimode, and multilevel network data
with different formats. There are effective ways available to treat multiple networks with
routines that combine algebraic systems like the partially ordered semigroup or the semiring
structure with the relational bundles occurring in different types of multivariate network
data sets. It also provides an algebraic approach for affiliation networks through Galois
derivations between families of the pairs of subsets in the two domains.
Author: Antonio Rivero Ostoic [aut, cre]
Maintainer: Antonio Rivero Ostoic <multiplex@post.com>
Diff between multiplex versions 2.9.8 dated 2022-02-09 and 2.9.9 dated 2022-06-30
multiplex-2.9.8/multiplex/R/zbindd.R |only multiplex-2.9.8/multiplex/man/zbindd.Rd |only multiplex-2.9.9/multiplex/DESCRIPTION | 10 - multiplex-2.9.9/multiplex/MD5 | 66 +++--- multiplex-2.9.9/multiplex/NAMESPACE | 7 multiplex-2.9.9/multiplex/R/fact.R | 6 multiplex-2.9.9/multiplex/R/mlvl.R | 86 +++++---- multiplex-2.9.9/multiplex/R/read.srt.R | 2 multiplex-2.9.9/multiplex/R/strng.R | 2 multiplex-2.9.9/multiplex/R/transf.R | 37 ++- multiplex-2.9.9/multiplex/R/zbind.R | 162 +++++++++++------ multiplex-2.9.9/multiplex/inst/doc/TwoModeNetworks.pdf |binary multiplex-2.9.9/multiplex/man/diagram.Rd | 4 multiplex-2.9.9/multiplex/man/dichot.Rd | 5 multiplex-2.9.9/multiplex/man/expos.Rd | 8 multiplex-2.9.9/multiplex/man/fltr.Rd | 2 multiplex-2.9.9/multiplex/man/incubs.Rd | 12 - multiplex-2.9.9/multiplex/man/mlvl.Rd | 36 ++- multiplex-2.9.9/multiplex/man/multiplex-package.Rd | 4 multiplex-2.9.9/multiplex/man/neighb.Rd | 21 +- multiplex-2.9.9/multiplex/man/prev.Rd | 6 multiplex-2.9.9/multiplex/man/rbox.Rd | 4 multiplex-2.9.9/multiplex/man/read.gml.Rd | 2 multiplex-2.9.9/multiplex/man/read.srt.Rd | 11 - multiplex-2.9.9/multiplex/man/reduc.Rd | 2 multiplex-2.9.9/multiplex/man/rel.sys.Rd | 6 multiplex-2.9.9/multiplex/man/rm.isol.Rd | 6 multiplex-2.9.9/multiplex/man/semigroup.Rd | 14 - multiplex-2.9.9/multiplex/man/semiring.Rd | 2 multiplex-2.9.9/multiplex/man/signed.Rd | 6 multiplex-2.9.9/multiplex/man/strings.Rd | 4 multiplex-2.9.9/multiplex/man/summaryBundles.Rd | 9 multiplex-2.9.9/multiplex/man/transf.Rd | 11 - multiplex-2.9.9/multiplex/man/wordT.Rd | 18 + multiplex-2.9.9/multiplex/man/zbind.Rd | 31 ++- 35 files changed, 375 insertions(+), 227 deletions(-)
Title: Work with 'YouTube API'
Description: Provide function for get data from 'YouTube Data API'
<https://developers.google.com/youtube/v3/docs/>, 'YouTube Analytics API'
<https://developers.google.com/youtube/analytics/reference/> and
'YouTube Reporting API' <https://developers.google.com/youtube/reporting/v1/reports>.
Author: Alexey Seleznev [aut, cre] ,
Netpeak [cph]
Maintainer: Alexey Seleznev <selesnow@gmail.com>
Diff between rytstat versions 0.2.1 dated 2021-12-07 and 0.3.0 dated 2022-06-30
DESCRIPTION | 8 - MD5 | 36 +++--- NAMESPACE | 2 NEWS.md | 86 +++++++++------ R/ryt_get_channel_activities.R | 210 +++++++++++++++++++++++++------------- R/ryt_get_channels.R | 102 ++++++++++++++++-- R/ryt_get_playlist_items.R | 62 ++++++++++- R/ryt_get_playlist_items_helper.R | 16 +- R/ryt_get_playlists.R | 72 +++++++++++-- R/ryt_get_video_details.R | 153 +++++++++++++++++++++++++++ R/ryt_get_videos_details_helper.R | 143 +++++++++++++------------ R/ryt_search.R |only README.md | 58 +++++++++- man/ryt_get_channel_activities.Rd | 91 ++++++++++++++++ man/ryt_get_channels.Rd | 106 ++++++++++++++++++- man/ryt_get_playlist_items.Rd | 67 +++++++++++- man/ryt_get_playlists.Rd | 69 ++++++++++++ man/ryt_get_video_details.Rd | 180 ++++++++++++++++++++++++++++++++ man/ryt_search.Rd |only man/rytstat-package.Rd | 4 20 files changed, 1214 insertions(+), 251 deletions(-)
Title: Finding the Number of Significant Principal Components
Description: Implements methods to automate the Auer-Gervini graphical
Bayesian approach for determining the number of significant
principal components. Automation uses clustering, change points, or
simple statistical models to distinguish "long" from "short" steps
in a graph showing the posterior number of components as a function
of a prior parameter. See <doi:10.1101/237883>.
Author: Kevin R. Coombes, Min Wang
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between PCDimension versions 1.1.11 dated 2019-05-06 and 1.1.13 dated 2022-06-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/00-Auer-Gervini.R | 2 +- build/vignette.rds |binary data/spca.rda |binary inst/doc/PCDimension.pdf |binary 6 files changed, 10 insertions(+), 10 deletions(-)
Title: Doubly Debiased Lasso (DDL)
Description: Statistical inference for the regression coefficients in high-dimensional linear models with hidden confounders. The Doubly Debiased Lasso method was proposed in <arXiv:2004.03758>.
Author: Domagoj Ćevid [aut],
Chengzhu Huang [aut],
Zijian Guo [aut, cre],
Peter Buehlmann [aut]
Maintainer: Zijian Guo <zijguo@stat.rutgers.edu>
Diff between DDL versions 1.0.0 dated 2022-04-15 and 1.0.1 dated 2022-06-30
DESCRIPTION | 6 +- MD5 | 16 ++++--- NAMESPACE | 3 + R/DDL.R | 100 +++++++++++++++++++++++++---------------------- R/method.R |only R/utils.R | 9 ++-- README.md | 83 ++++++++++++++++++++++++++++++++++----- man/DDL.Rd | 19 ++++---- man/ci.DDL.Rd |only man/print.summary.DDL.Rd |only man/summary.DDL.Rd |only 11 files changed, 157 insertions(+), 79 deletions(-)
Title: Cross-National Data on Sub-National Violence
Description: Tools to download and merge data files on sub-national conflict, violence and protests from <http://www.x-sub.org>.
Author: Yuri Zhukov [aut, cre],
Christian Davenport [aut],
Nadiya Kostyuk [aut]
Maintainer: Yuri Zhukov <zhukov@umich.edu>
Diff between xSub versions 3.0.1 dated 2020-06-15 and 3.0.2 dated 2022-06-30
DESCRIPTION | 8 ++-- MD5 | 4 +- R/get_xSub.R | 101 +++++++++++++++++++++++++++++------------------------------ 3 files changed, 57 insertions(+), 56 deletions(-)
Title: Statistical Data Analysis for Randomized Block Design
Experiments
Description: Functions for analysis of bulk data generated from experiments in Randomized block design as per Panse and Sukhatme (1954) <https://books.google.co.in/books?id=Efo9AAAAYAAJ>. Computes analysis of variance; Descriptive statistics parameter like Mean, Minimum, Maximum, CV, Standard error of mean, Standard Error of deviation, CD; Genetic parameter statistics Genotypic Coefficient of Variation, Phenotypic Coefficient of Variation, Heritability in broad sense, Genetic Advance and Genetic Advance per cent mean; Variance and Co-variance matrix of genotypic, phenotypic and environmental; Correlation of genotypic, phenotypic and environmental. Further includes directly publication ready tables.
Author: Nitesh Shirur Devaraja [aut, cre],
Parashuram Patroti [aut],
Shilpa Parashuram [aut],
Aravind J [ctb] ,
Sunil Kumar [ctb]
Maintainer: Nitesh Shirur Devaraja <mail@niteshgpb.in>
Diff between TraitStats versions 1.0.1 dated 2021-01-06 and 1.0.2 dated 2022-06-30
DESCRIPTION | 12 +++++------- MD5 | 4 ++-- man/traitstatsgenpar.Rd | 40 ++++++++++++++++++++-------------------- 3 files changed, 27 insertions(+), 29 deletions(-)
Title: Clustering and Visualizing Distance Matrices
Description: Defines the classes used to explore, cluster and
visualize distance matrices, especially those arising from binary
data. See Abrams and colleagues, 2021, <doi:10.1093/bioinformatics/btab037>.
Author: Kevin R. Coombes, Caitlin E. Coombes
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between Mercator versions 1.1.1 dated 2021-07-16 and 1.1.2 dated 2022-06-30
DESCRIPTION | 8 +- MD5 | 32 +++++------ NAMESPACE | 3 - NEWS | 7 ++ R/04-vis.R | 7 +- TODO | 3 - build/vignette.rds |binary data/CML1000.rda |binary data/CML500.rda |binary data/fakedata.rda |binary data/lgfFeatures.rda |binary inst/doc/mercVis.html | 119 ++++++++++++++++++++--------------------- inst/doc/mercator.html | 56 +++++++++---------- inst/doc/umap-som.html | 89 +++++++++++++++--------------- man/Mercator-class.Rd | 4 + tests/test-04vis.Rout.save | 12 ++-- tests/test-05recolor.Rout.save | 54 +++++++++--------- 17 files changed, 205 insertions(+), 189 deletions(-)
Title: Seeking and Finding Clones in Copy Number and Sequencing Data
Description: Defines the classes and functions used to simulate and
to analyze data sets describing copy number variants and,
optionally, sequencing mutations in order to detect clonal subsets.
See Zucker et al. (2019) <doi:10.1093/bioinformatics/btz057>.
Author: Kevin R. Coombes, Mark Zucker
Maintainer: Kevin R. Coombes <krc@silicovore.com>
Diff between CloneSeeker versions 1.0.10 dated 2020-04-27 and 1.0.11 dated 2022-06-30
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/04-algorithm.R | 2 +- R/sysdata.rda |binary build/vignette.rds |binary inst/doc/CloneSeeker.pdf |binary 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Time-Varying Coefficient for Single and Multi-Equation
Regressions
Description: Fitting time-varying coefficient models for single and multi-equation regressions, using kernel smoothing techniques.
Author: Isabel Casas [aut, cre],
Ruben Fernandez-Casal [aut]
Maintainer: Isabel Casas <casasis@gmail.com>
Diff between tvReg versions 0.5.6 dated 2021-09-22 and 0.5.7 dated 2022-06-30
DESCRIPTION | 12 MD5 | 38 +- NEWS.md | 170 +++++----- R/confint_tvReg.R | 2 R/forecast_tvReg.R | 789 +++++++++++++++++++++++++------------------------- R/tvAR.R | 6 R/tvCov.R | 384 ++++++++++++------------ R/tvPLM.R | 376 +++++++++++------------ R/tvReg-package.R | 422 +++++++++++++------------- R/tvSURE.R | 672 +++++++++++++++++++++--------------------- inst/doc/tvReg.html | 27 - man/CEES.Rd | 2 man/OECD.Rd | 6 man/RV.Rd | 2 man/confint.tvReg.Rd | 2 man/forecast-tvReg.Rd | 4 man/tvAR.Rd | 6 man/tvCov.Rd | 2 man/tvPLM.Rd | 6 man/tvSURE.Rd | 10 20 files changed, 1473 insertions(+), 1465 deletions(-)
Title: Applied Latent Semantic Analysis (LSA) Functions
Description: Provides functions that allow for convenient working with vector space models of semantics/distributional semantic models/word embeddings.
Originally built for LSA models (hence the name), but can be used for all such vector-based models.
For actually building a vector semantic space, use the package 'lsa' or other specialized software.
Downloadable semantic spaces can be found at <https://sites.google.com/site/fritzgntr/software-resources>.
Author: Fritz Guenther [aut, cre]
Maintainer: Fritz Guenther <fritz.guenther@uni-tuebingen.de>
Diff between LSAfun versions 0.6.2 dated 2022-05-01 and 0.6.3 dated 2022-06-30
LSAfun-0.6.2/LSAfun/R/breakdown.r |only LSAfun-0.6.2/LSAfun/man/breakdown.Rd |only LSAfun-0.6.3/LSAfun/ChangeLog | 5 + LSAfun-0.6.3/LSAfun/DESCRIPTION | 10 +-- LSAfun-0.6.3/LSAfun/MD5 | 92 ++++++++++++++---------------- LSAfun-0.6.3/LSAfun/NAMESPACE | 1 LSAfun-0.6.3/LSAfun/R/Cosine.r | 9 -- LSAfun-0.6.3/LSAfun/R/MultipleChoice.r | 5 - LSAfun-0.6.3/LSAfun/R/Predication.r | 18 +---- LSAfun-0.6.3/LSAfun/R/asym.R | 12 --- LSAfun-0.6.3/LSAfun/R/choose.target.r | 7 -- LSAfun-0.6.3/LSAfun/R/coherence.r | 5 - LSAfun-0.6.3/LSAfun/R/compose.r | 8 -- LSAfun-0.6.3/LSAfun/R/conSIM.r | 12 --- LSAfun-0.6.3/LSAfun/R/costring.r | 15 ---- LSAfun-0.6.3/LSAfun/R/distance.r | 11 --- LSAfun-0.6.3/LSAfun/R/genericSummary.R | 4 - LSAfun-0.6.3/LSAfun/R/multicos.r | 6 - LSAfun-0.6.3/LSAfun/R/multicostring.r | 16 ----- LSAfun-0.6.3/LSAfun/R/multidocs.r | 17 +---- LSAfun-0.6.3/LSAfun/R/neighbors.r | 5 - LSAfun-0.6.3/LSAfun/R/pairwise.r | 6 - LSAfun-0.6.3/LSAfun/R/plausibility.r | 5 - LSAfun-0.6.3/LSAfun/R/plot_doclist.r | 8 -- LSAfun-0.6.3/LSAfun/R/plot_neighbors.r | 14 +--- LSAfun-0.6.3/LSAfun/R/plot_wordlist.r | 8 -- LSAfun-0.6.3/LSAfun/man/Cosine.Rd | 6 - LSAfun-0.6.3/LSAfun/man/LSAfun-package.Rd | 2 LSAfun-0.6.3/LSAfun/man/MultipleChoice.Rd | 13 ++-- LSAfun-0.6.3/LSAfun/man/Predication.Rd | 7 -- LSAfun-0.6.3/LSAfun/man/asym.Rd | 6 - LSAfun-0.6.3/LSAfun/man/choose.target.Rd | 6 - LSAfun-0.6.3/LSAfun/man/coherence.Rd | 10 +-- LSAfun-0.6.3/LSAfun/man/compose.Rd | 6 - LSAfun-0.6.3/LSAfun/man/conSIM.Rd | 6 - LSAfun-0.6.3/LSAfun/man/costring.Rd | 10 +-- LSAfun-0.6.3/LSAfun/man/distance.Rd | 6 - LSAfun-0.6.3/LSAfun/man/genericSummary.Rd | 5 - LSAfun-0.6.3/LSAfun/man/multicos.Rd | 6 - LSAfun-0.6.3/LSAfun/man/multicostring.Rd | 12 +-- LSAfun-0.6.3/LSAfun/man/multidocs.Rd | 15 ++-- LSAfun-0.6.3/LSAfun/man/neighbors.Rd | 6 - LSAfun-0.6.3/LSAfun/man/normalize.Rd | 2 LSAfun-0.6.3/LSAfun/man/pairwise.Rd | 6 - LSAfun-0.6.3/LSAfun/man/plausibility.Rd | 6 - LSAfun-0.6.3/LSAfun/man/plot_doclist.Rd | 14 ++-- LSAfun-0.6.3/LSAfun/man/plot_neighbors.Rd | 5 - LSAfun-0.6.3/LSAfun/man/plot_wordlist.Rd | 5 - 48 files changed, 181 insertions(+), 278 deletions(-)
Title: Distance-Based Common Spatial Patterns
Description: A way to apply Distance-Based Common Spatial Patterns
(DB-CSP) techniques in different fields, both classical Common Spatial
Patterns (CSP) as well as DB-CSP. The method is composed of two
phases: applying the DB-CSP algorithm and performing a classification.
The main idea behind the CSP is to use a linear transform to project
data into low-dimensional subspace with a projection matrix, in such a
way that each row consists of weights for signals. This transformation
maximizes the variance of two-class signal matrices.The dbcsp object
is created to compute the projection vectors. For exploratory and
descriptive purpose, plot and boxplot functions can be used. Functions
train, predict and selectQ are implemented for the classification
step.
Author: Itziar Irigoien [aut],
Concepcion Arenas [aut],
Itsaso Rodriguez-Moreno [cre, aut]
Maintainer: Itsaso Rodriguez-Moreno <itsaso.rodriguez@ehu.eus>
Diff between dbcsp versions 0.0.2.0 dated 2022-02-17 and 0.0.2.1 dated 2022-06-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 ++++++++ R/CSP.R | 14 ++++++++++++-- R/compB.R | 8 ++++++-- 5 files changed, 34 insertions(+), 12 deletions(-)
Title: Advanced Optimizers for Torch
Description: Optimizers for 'torch' deep learning library. These
functions include recent results published in the literature and are
not part of the optimizers offered in 'torch'. Prospective users
should test these optimizers with their data, since performance
depends on the specific problem being solved. The packages includes
the following optimizers: (a) 'adabelief' by Zhuang et al (2020),
<arXiv:2010.07468>; (b) 'adabound' by Luo et al.(2019),
<arXiv:1902.09843>; (c) 'adahessian' by Yao et al.(2021)
<arXiv:2006.00719>; (d) 'adamw' by Loshchilov & Hutter (2019),
<arXiv:1711.05101>; (e) 'madgrad' by Defazio and Jelassi (2021),
<arXiv:2101.11075>; (f) 'nadam' by Dozat (2019),
<https://openreview.net/pdf/OM0jvwB8jIp57ZJjtNEZ.pdf>; (g) 'qhadam' by
Ma and Yarats(2019), <arXiv:1810.06801>; (h) 'radam' by Liu et al.
(2019), <arXiv:1908.03265>; (i) 'swats' by Shekar and Sochee (2018),
<arXiv:1712.07628>; (j) 'yogi' by Zaheer et al.(2019),
<https:://papers.nips.cc/paper/8186-adaptive-methods-for-nonconvex-optimization>.
Author: Gilberto Camara [aut, cre],
Rolf Simoes [aut],
Daniel Falbel [aut],
Felipe Souza [aut],
Alber Sanchez [aut]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between torchopt versions 0.1.1 dated 2022-04-25 and 0.1.2 dated 2022-06-30
DESCRIPTION | 27 ++++---- MD5 | 35 ++++++----- NAMESPACE | 1 NEWS.md | 11 +++ R/adabelief.R | 2 R/adabound.R | 2 R/adahessian.R |only R/adamw.R | 2 R/madgrad.R | 1 R/nadam.R | 2 R/qhadam.R | 4 - R/radam.R | 2 R/swats.R | 2 R/utils-testopt.R | 51 ++++++++++++---- R/yogi.R | 2 inst/WORDLIST | 109 +++++++++++++++++++++++++++++++++++- man/optim_adahessian.Rd |only man/test_optim.Rd | 12 ++- man/torchopt-package.Rd | 2 tests/testthat/test-utils-testopt.R |only 20 files changed, 206 insertions(+), 61 deletions(-)
Title: Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations
Description: Genomic alterations including single nucleotide substitution,
copy number alteration, etc. are the major force for cancer
initialization and development. Due to the specificity of molecular
lesions caused by genomic alterations, we can generate characteristic
alteration spectra, called 'signature' (Wang, Shixiang, et al. (2021)
<DOI:10.1371/journal.pgen.1009557> & Alexandrov, Ludmil B., et al.
(2020) <DOI:10.1038/s41586-020-1943-3> & Steele Christopher D., et al.
(2022) <DOI:10.1038/s41586-022-04738-6>). This package helps users to
extract, analyze and visualize signatures from genomic alteration
records, thus providing new insight into cancer study.
Author: Shixiang Wang [aut, cre] ,
Ziyu Tao [aut] ,
Huimin Li [aut] ,
Tao Wu [aut] ,
Xue-Song Liu [aut, ctb] ,
Anand Mayakonda [ctb]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between sigminer versions 2.1.4 dated 2022-04-26 and 2.1.5 dated 2022-06-30
DESCRIPTION | 80 LICENSE | 4 MD5 | 448 ++--- NAMESPACE | 316 +-- NEWS.md | 797 ++++----- R/CN-mutex-classification-method.R | 1262 +++++++------- R/RcppExports.R | 30 R/add_h_arrow.R | 102 - R/add_labels.R | 176 +- R/assert.R | 14 R/bayesianNMF.R | 558 +++--- R/best_practice.R | 2674 +++++++++++++++---------------- R/best_practice_helper.R | 1944 +++++++++++----------- R/class.R | 262 +-- R/cosine.R | 64 R/data.R | 348 ++-- R/enrich_component_strand_bias.R | 202 +- R/find_enriched_signature.R | 106 - R/generate_matrices.R | 1784 ++++++++++---------- R/get.R | 1010 +++++------ R/get_Aneuploidy_score.R | 226 +- R/get_adj_p.R | 204 +- R/get_bayesian_result.R | 162 - R/get_cn_freq_table.R | 166 - R/get_cn_ploidy.R | 100 - R/get_genome_annotation.R | 124 - R/get_group_comparison.R | 260 +-- R/get_groups.R | 474 ++--- R/get_intersect_size.R | 64 R/get_pLOH_score.R | 148 - R/get_reconstructed_similarity.R | 146 - R/get_shannon_diversity_index.R | 100 - R/get_sig_cancer_type_index.R | 244 +- R/get_sig_db.R | 348 ++-- R/get_sig_exposure.R | 140 - R/get_sig_feature_association.R | 522 +++--- R/get_sig_optimal_exposure.R | 104 - R/get_sig_similarity.R | 602 +++--- R/get_sv.R | 594 +++--- R/get_tidy_association.R | 134 - R/globalVariables.R | 20 R/group_enrichment.R | 540 +++--- R/handle_hyper_mutation.R | 108 - R/hello.R | 38 R/helper_create_chunks.R | 22 R/helper_create_colormap.R | 42 R/helper_derive_cn_features.R | 822 ++++----- R/helper_join_segments.R | 408 ++-- R/helper_normalize_by_feature.R | 86 R/helper_scale_nmf_matrix.R | 56 R/helper_sort_signature.R | 106 - R/output.R | 878 +++++----- R/read_copynumber.R | 978 +++++------ R/read_copynumber_ascat.R | 112 - R/read_copynumber_seqz.R | 82 R/read_maf.R | 82 R/read_vcf.R | 410 ++-- R/same_size_clustering.R | 328 +-- R/scoring.R | 458 ++--- R/show_catalogue.R | 164 - R/show_cn_circos.R | 280 +-- R/show_cn_components.R | 142 - R/show_cn_distribution.R | 326 +-- R/show_cn_features.R | 134 - R/show_cn_freq_circos.R | 460 ++--- R/show_cn_group_profile.R | 576 +++--- R/show_cn_profile.R | 474 ++--- R/show_cor.R | 244 +- R/show_cosmic_signature.R | 94 - R/show_cosmic_signature_profile.R | 214 +- R/show_group_comparison.R | 548 +++--- R/show_group_distribution.R | 398 ++-- R/show_group_enrichment.R | 389 ++-- R/show_group_mapping.R | 200 +- R/show_groups.R | 34 R/show_sig_bootstrap.R | 754 ++++---- R/show_sig_consensusmap.R | 56 R/show_sig_exposure.R | 476 ++--- R/show_sig_feature_corrplot.R | 504 ++--- R/show_sig_fit.R | 172 - R/show_sig_profile.R | 1478 ++++++++--------- R/show_sig_profile_heatmap.R | 612 +++---- R/show_sig_profile_loop.R | 146 - R/sig_auto_extract.R | 620 +++---- R/sig_convert.R | 312 +-- R/sig_estimate.R | 878 +++++----- R/sig_extract.R | 350 ++-- R/sig_fit.R | 1212 +++++++------- R/sig_fit_bootstrap.R | 566 +++--- R/sig_fit_bootstrap_batch.R | 462 ++--- R/sig_tally.R | 1137 ++++++------- R/sig_unify_extract.R | 190 +- R/sigflow.R | 6 R/sigminer.R | 66 R/signature_obj_operation.R | 274 +-- R/sigprofiler.R | 726 ++++---- R/simulation.R | 204 +- R/transform_seg_table.R | 232 +- R/utils-pipe.R | 22 R/utils-tidy-eval.R | 94 - R/utils.R | 520 +++--- R/utils_mem.R | 88 - R/zzz.R | 30 README.md | 407 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 58 inst/doc/cnsignature.R |only inst/doc/cnsignature.Rmd |only inst/doc/cnsignature.html |only inst/doc/sigminer.R | 114 - inst/doc/sigminer.Rmd | 194 +- inst/doc/sigminer.html | 853 ++++----- inst/extdata/CN40-Map.txt | 82 inst/extdata/CN48-Map.txt | 98 - inst/extdata/CNS_signatures_TCGA.rds |binary inst/extdata/metastatic_tumor.segtab.txt | 404 ++-- inst/extdata/test1.vcf | 200 +- inst/extdata/test2.vcf | 200 +- inst/extdata/test3.vcf | 200 +- inst/py/nmf.py | 182 +- man/CN.features.Rd | 36 man/CopyNumber-class.Rd | 56 man/MAF-class.Rd | 66 man/add_h_arrow.Rd | 106 - man/add_labels.Rd | 164 - man/bp.Rd | 806 ++++----- man/centromeres.hg19.Rd | 36 man/centromeres.hg38.Rd | 36 man/centromeres.mm10.Rd | 36 man/centromeres.mm9.Rd | 48 man/chromsize.hg19.Rd | 36 man/chromsize.hg38.Rd | 36 man/chromsize.mm10.Rd | 36 man/chromsize.mm9.Rd | 36 man/cosine.Rd | 54 man/cytobands.hg19.Rd | 36 man/cytobands.hg38.Rd | 36 man/cytobands.mm10.Rd | 36 man/cytobands.mm9.Rd | 36 man/enrich_component_strand_bias.Rd | 34 man/figures/README-unnamed-chunk-9-1.png |binary man/get_Aneuploidy_score.Rd | 120 - man/get_adj_p.Rd | 186 +- man/get_bayesian_result.Rd | 64 man/get_cn_freq_table.Rd | 66 man/get_cn_ploidy.Rd | 54 man/get_genome_annotation.Rd | 94 - man/get_group_comparison.Rd | 152 - man/get_groups.Rd | 154 - man/get_intersect_size.Rd | 64 man/get_pLOH_score.Rd | 92 - man/get_shannon_diversity_index.Rd | 82 man/get_sig_cancer_type_index.Rd | 80 man/get_sig_db.Rd | 160 - man/get_sig_exposure.Rd | 108 - man/get_sig_feature_association.Rd | 106 - man/get_sig_rec_similarity.Rd | 38 man/get_sig_similarity.Rd | 268 +-- man/get_tidy_association.Rd | 50 man/group_enrichment.Rd | 193 +- man/handle_hyper_mutation.Rd | 44 man/hello.Rd | 28 man/output_bootstrap.Rd | 80 man/output_fit.Rd | 80 man/output_sig.Rd | 80 man/output_tally.Rd | 44 man/pipe.Rd | 24 man/read_copynumber.Rd | 242 +- man/read_copynumber_ascat.Rd | 38 man/read_copynumber_seqz.Rd | 44 man/read_maf.Rd | 64 man/read_sv_as_rs.Rd | 74 man/read_vcf.Rd | 84 man/read_xena_variants.Rd | 64 man/report_bootstrap_p_value.Rd | 38 man/same_size_clustering.Rd | 100 - man/scoring.Rd | 156 - man/show_catalogue.Rd | 112 - man/show_cn_circos.Rd | 130 - man/show_cn_components.Rd | 102 - man/show_cn_distribution.Rd | 104 - man/show_cn_features.Rd | 100 - man/show_cn_freq_circos.Rd | 136 - man/show_cn_group_profile.Rd | 194 +- man/show_cn_profile.Rd | 148 - man/show_cor.Rd | 146 - man/show_cosmic.Rd | 66 man/show_cosmic_sig_profile.Rd | 114 - man/show_group_comparison.Rd | 232 +- man/show_group_distribution.Rd | 194 +- man/show_group_enrichment.Rd | 127 - man/show_group_mapping.Rd | 118 - man/show_groups.Rd | 44 man/show_sig_bootstrap.Rd | 426 ++-- man/show_sig_consensusmap.Rd | 86 man/show_sig_exposure.Rd | 178 +- man/show_sig_feature_corrplot.Rd | 162 - man/show_sig_fit.Rd | 160 - man/show_sig_profile.Rd | 374 ++-- man/show_sig_profile_heatmap.Rd | 202 +- man/show_sig_profile_loop.Rd | 102 - man/sig_auto_extract.Rd | 260 +-- man/sig_convert.Rd | 96 - man/sig_estimate.Rd | 422 ++-- man/sig_extract.Rd | 154 - man/sig_fit.Rd | 330 +-- man/sig_fit_bootstrap.Rd | 286 +-- man/sig_fit_bootstrap_batch.Rd | 144 - man/sig_operation.Rd | 128 - man/sig_tally.Rd | 362 ++-- man/sig_unify_extract.Rd | 132 - man/sigminer.Rd | 32 man/sigprofiler.Rd | 196 +- man/simulated_catalogs.Rd | 50 man/simulation.Rd | 132 - man/subset.CopyNumber.Rd | 52 man/tidyeval.Rd | 104 - man/transcript.hg19.Rd | 36 man/transcript.hg38.Rd | 36 man/transcript.mm10.Rd | 36 man/transcript.mm9.Rd | 36 man/transform_seg_table.Rd | 118 - man/use_color_style.Rd | 60 src/calc_cosine.cpp | 3 vignettes/cnsignature.Rmd |only vignettes/sigminer.Rmd | 194 +- 227 files changed, 27437 insertions(+), 27375 deletions(-)
Title: Landscape and Range Expansion Simulation
Description: Tools to generate random landscape graphs, evaluate species
occurrence in dynamic landscapes, simulate future landscape occupation and
evaluate range expansion when new empty patches are available (e.g. as a
result of climate change). References: Mestre, F., Canovas, F., Pita, R.,
Mira, A., Beja, P. (2016) <doi:10.1016/j.envsoft.2016.03.007>; Mestre, F.,
Risk, B., Mira, A., Beja, P., Pita, R. (2017)
<doi:10.1016/j.ecolmodel.2017.06.013>; Mestre, F., Pita, R., Mira, A., Beja,
P. (2020) <doi:10.1186/s12898-019-0273-5>.
Author: Frederico Mestre, Fernando Canovas, Benjamin Risk, Ricardo Pita,
Antonio Mira, Pedro Beja.
Maintainer: Frederico Mestre <mestre.frederico@gmail.com>
Diff between MetaLandSim versions 1.0.9 dated 2022-01-27 and 1.0.10 dated 2022-06-30
MetaLandSim-1.0.10/MetaLandSim/DESCRIPTION | 8 MetaLandSim-1.0.10/MetaLandSim/MD5 | 65 - MetaLandSim-1.0.10/MetaLandSim/R/MetaLandSim.GUI.R | 18 MetaLandSim-1.0.10/MetaLandSim/R/addpoints.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/attr_age_unique_landscape.R | 6 MetaLandSim-1.0.10/MetaLandSim/R/cluster.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/cluster.id.R | 12 MetaLandSim-1.0.10/MetaLandSim/R/components.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/edge.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/extract.graph.R | 11 MetaLandSim-1.0.10/MetaLandSim/R/manage_expansion_sim.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/matrix.graph.R | 4 MetaLandSim-1.0.10/MetaLandSim/R/metrics.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/min_distance.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/plotL.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/plot_expansion.R | 4 MetaLandSim-1.0.10/MetaLandSim/R/plot_graph.R | 15 MetaLandSim-1.0.10/MetaLandSim/R/range_expansion.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/range_raster.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/remove.species.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/removepoints.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/rland.graph.R | 2 MetaLandSim-1.0.10/MetaLandSim/R/simulate_graph.R | 6 MetaLandSim-1.0.10/MetaLandSim/R/span.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/species.graph.R | 3 MetaLandSim-1.0.10/MetaLandSim/R/spom.r | 4 MetaLandSim-1.0.10/MetaLandSim/R/summary_landscape.R | 4 MetaLandSim-1.0.10/MetaLandSim/R/summary_metapopulation.R | 4 MetaLandSim-1.0.10/MetaLandSim/inst/doc/landscape_simulation-knitr.pdf |binary MetaLandSim-1.0.10/MetaLandSim/inst/doc/parameter_estimation-knitr.pdf |binary MetaLandSim-1.0.10/MetaLandSim/inst/doc/range_expansion-knitr.pdf |binary MetaLandSim-1.0.10/MetaLandSim/man/parameter.estimate.Rd | 177 +-- MetaLandSim-1.0.10/MetaLandSim/man/spom.Rd | 475 ++++------ MetaLandSim-1.0.9/MetaLandSim/R/vmm.R |only 34 files changed, 443 insertions(+), 414 deletions(-)
Title: Construct Modeling Packages
Description: Building modeling packages is hard. A large amount of effort
generally goes into providing an implementation for a new method that
is efficient, fast, and correct, but often less emphasis is put on the
user interface. A good interface requires specialized knowledge about
S3 methods and formulas, which the average package developer might not
have. The goal of 'hardhat' is to reduce the burden around building
new modeling packages by providing functionality for preprocessing,
predicting, and validating input.
Author: Davis Vaughan [aut, cre],
Max Kuhn [aut],
RStudio [cph, fnd]
Maintainer: Davis Vaughan <davis@rstudio.com>
Diff between hardhat versions 1.1.0 dated 2022-06-10 and 1.2.0 dated 2022-06-30
hardhat-1.1.0/hardhat/tests/testthat/_snaps/mold-recipe.md |only hardhat-1.2.0/hardhat/DESCRIPTION | 8 hardhat-1.2.0/hardhat/MD5 | 37 - hardhat-1.2.0/hardhat/NEWS.md | 27 + hardhat-1.2.0/hardhat/R/blueprint-recipe-default.R | 260 +++++----- hardhat-1.2.0/hardhat/R/blueprint-recipe.R | 30 - hardhat-1.2.0/hardhat/R/util.R | 26 - hardhat-1.2.0/hardhat/R/validation.R | 6 hardhat-1.2.0/hardhat/build/hardhat.pdf |binary hardhat-1.2.0/hardhat/inst/doc/forge.html | 10 hardhat-1.2.0/hardhat/inst/doc/package.html | 6 hardhat-1.2.0/hardhat/man/default_recipe_blueprint.Rd | 74 +- hardhat-1.2.0/hardhat/man/new-blueprint.Rd | 14 hardhat-1.2.0/hardhat/man/new-default-blueprint.Rd | 14 hardhat-1.2.0/hardhat/tests/testthat/_snaps/forge-recipe.md |only hardhat-1.2.0/hardhat/tests/testthat/_snaps/shrink.md |only hardhat-1.2.0/hardhat/tests/testthat/data-raw/hardhat-0.2.0.R | 31 + hardhat-1.2.0/hardhat/tests/testthat/data/hardhat-0.2.0-post-mold-recipe-nonstandard-role.rds |only hardhat-1.2.0/hardhat/tests/testthat/helper-recipes.R |only hardhat-1.2.0/hardhat/tests/testthat/test-forge-recipe.R | 200 +++++-- hardhat-1.2.0/hardhat/tests/testthat/test-mold-recipe.R | 147 +++-- hardhat-1.2.0/hardhat/tests/testthat/test-shrink.R | 8 22 files changed, 522 insertions(+), 376 deletions(-)
More information about TimeVarConcurrentModel at CRAN
Permanent link
Title: Utility Functions
Description: Base R sometimes requires verbose statements for simple,
often recurring tasks, such as printing text without trailing
space, ending with newline. This package aims at providing
shorthands for such tasks.
Author: Tobias Schmidt [aut, cre]
Maintainer: Tobias Schmidt <tobias.schmidt331@gmail.com>
Diff between toscutil versions 2.1.0 dated 2022-02-22 and 2.5.0 dated 2022-06-30
toscutil-2.1.0/toscutil/README.md |only toscutil-2.5.0/toscutil/DESCRIPTION | 11 +- toscutil-2.5.0/toscutil/MD5 | 42 ++++++++-- toscutil-2.5.0/toscutil/NAMESPACE | 20 ++++ toscutil-2.5.0/toscutil/R/caller.R |only toscutil-2.5.0/toscutil/R/cat2.R | 41 ++++++++- toscutil-2.5.0/toscutil/R/catf.R |only toscutil-2.5.0/toscutil/R/function_locals.R |only toscutil-2.5.0/toscutil/R/home.R |only toscutil-2.5.0/toscutil/R/imports.R |only toscutil-2.5.0/toscutil/R/locals.R |only toscutil-2.5.0/toscutil/R/now.R | 13 +-- toscutil-2.5.0/toscutil/R/now_ms.R |only toscutil-2.5.0/toscutil/R/predict.numeric.R | 2 toscutil-2.5.0/toscutil/R/stub.R |only toscutil-2.5.0/toscutil/R/xdg.R |only toscutil-2.5.0/toscutil/man/caller.Rd |only toscutil-2.5.0/toscutil/man/cat2.Rd | 20 +++- toscutil-2.5.0/toscutil/man/catf.Rd |only toscutil-2.5.0/toscutil/man/config_dir.Rd |only toscutil-2.5.0/toscutil/man/config_file.Rd |only toscutil-2.5.0/toscutil/man/data_dir.Rd |only toscutil-2.5.0/toscutil/man/function_locals.Rd |only toscutil-2.5.0/toscutil/man/home.Rd |only toscutil-2.5.0/toscutil/man/locals.Rd |only toscutil-2.5.0/toscutil/man/norm_path.Rd |only toscutil-2.5.0/toscutil/man/now.Rd | 11 +- toscutil-2.5.0/toscutil/man/now_ms.Rd |only toscutil-2.5.0/toscutil/man/stub.Rd |only toscutil-2.5.0/toscutil/man/xdg_config_home.Rd |only toscutil-2.5.0/toscutil/man/xdg_data_home.Rd |only toscutil-2.5.0/toscutil/tests/testthat/test-caller.R |only toscutil-2.5.0/toscutil/tests/testthat/test-function_locals.R |only toscutil-2.5.0/toscutil/tests/testthat/test-now.R |only toscutil-2.5.0/toscutil/tests/testthat/test-now_ms.R |only toscutil-2.5.0/toscutil/tests/testthat/test-stub.R |only 36 files changed, 124 insertions(+), 36 deletions(-)
Title: Estimate Number of Latent Factors and Factor Matrix for Factor
Analysis
Description: These functions estimate the latent factors of a given matrix, no matter it is high-dimensional or not. It tries to first estimate the number of factors using bi-cross-validation and then estimate the latent factor matrix and the noise variances. For more information about the method, see Art B. Owen and Jingshu Wang 2015 archived article on factor model (<arXiv:1503.03515>).
Author: Art B. Owen [aut],
Jingshu Wang [aut, cre]
Maintainer: Jingshu Wang <wangjingshususan@gmail.com>
Diff between esaBcv versions 1.2.1 dated 2015-05-29 and 1.2.1.1 dated 2022-06-30
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NAMESPACE | 5 +++-- data/simdat.rda |binary 4 files changed, 10 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-05-14 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2012-06-20 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-11-25 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-03-30 1.5
2015-02-01 1.4
2014-11-29 1.3
2014-10-11 1.02
2014-03-06 1.01
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2014-08-25 2.1
2014-08-21 2.0.1
2010-11-05 2.0
2010-07-29 1.4
2010-04-14 1.3
2008-09-29 1.2
2007-08-14 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2013-09-15 4.3
2013-05-05 4.1
2013-02-13 4.0
2013-02-12 3.2.2
2012-12-21 3.2.1
2012-08-07 3.2
2012-06-09 3.1
2011-08-10 2.0
2011-04-24 1.1-9
2010-10-16 1.1-8
2010-07-24 1.1-7
2010-06-03 1.1-5
2010-03-01 1.1-4
2009-12-18 1.1-3
2009-11-11 1.1-2
2009-10-26 1.1-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-10-03 1.0
Title: Stabilizing Regression and Variable Selection
Description: Contains an implementation of 'StabilizedRegression', a regression framework for heterogeneous data introduced in Pfister et al. (2021) <arXiv:1911.01850>. The procedure uses averaging to estimate a regression of a set of predictors X on a response variable Y by enforcing stability with respect to a given environment variable. The resulting regression leads to a variable selection procedure which allows to distinguish between stable and unstable predictors. The package further implements a visualization technique which illustrates the trade-off between stability and predictiveness of individual predictors.
Author: Niklas Pfister [aut, cre],
Evan Williams [ctb]
Maintainer: Niklas Pfister <np@math.ku.dk>
Diff between StabilizedRegression versions 1.0 dated 2020-03-13 and 1.1 dated 2022-06-30
DESCRIPTION | 11 +++++------ MD5 | 16 ++++++++-------- R/StabilizedRegression.R | 6 ++++++ R/linear_regressor.R | 7 +------ R/plot.SRanalysis.R | 4 +++- man/SRanalysis.Rd | 6 +++--- man/StabilizedRegression.Rd | 4 ++-- man/linear_regressor.Rd | 20 ++++++++++++-------- man/plot.SRanalysis.Rd | 4 +++- 9 files changed, 43 insertions(+), 35 deletions(-)
More information about StabilizedRegression at CRAN
Permanent link
Title: Parse 'ActiGraph' 'GT3X'/'GT3X+' 'Accelerometer' Data
Description: Implements a high performance C++ parser
for 'ActiGraph' 'GT3X'/'GT3X+' data format (with extension '.gt3x')
for 'accelerometer' samples. Activity samples can be easily read into a
matrix or data.frame. This allows for storing the raw 'accelerometer'
samples in the original binary format to reserve space.
Author: Tuomo Nieminen [aut, cre],
John Muschelli [aut] ,
Patrick Bos [ctb] ,
Vincent van Hees [ctb]
Maintainer: Tuomo Nieminen <tuomo.a.nieminen@gmail.com>
Diff between read.gt3x versions 1.0.2 dated 2021-01-13 and 1.2.0 dated 2022-06-30
DESCRIPTION | 24 +- MD5 | 45 ++-- NAMESPACE | 1 NEWS.md | 13 + R/RcppExports.R | 6 R/gt3x_info.R | 13 + R/gt3x_sample_data.R | 9 R/readGT3X.R | 47 +++- README.md | 419 ++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/batch_loading_gt3x.R |only inst/doc/batch_loading_gt3x.Rmd |only inst/doc/batch_loading_gt3x.html |only inst/doc/read_gt3x.html | 291 ++++++++++++--------------- man/gt3x_datapath.Rd | 1 man/parseGT3X.Rd | 6 man/parse_gt3x_info.Rd | 8 man/read.gt3x.Rd | 8 src/RcppExports.cpp | 15 + src/parseGT3X.cpp | 106 +++++++-- tests/testthat.R | 44 ---- tests/testthat/helper_tests.R |only tests/testthat/test-read_MRA.R | 34 +++ tests/testthat/test-reordering.R | 3 tests/testthat/test_read_new.R | 56 +++++ vignettes/batch_loading_gt3x.Rmd |only 26 files changed, 665 insertions(+), 484 deletions(-)
Title: Economics and Pricing Tools
Description: Functions to aid in micro and macro economic analysis and handling of price and
currency data. Includes extraction of relevant inflation and exchange rate data from World Bank
API, data cleaning/parsing, and standardisation. Inflation adjustment
calculations as found in Principles of Macroeconomics by Gregory Mankiw et al (2014). Current
and historical end of day exchange rates for 171 currencies from the European Central Bank
Statistical Data Warehouse (2020) <https://sdw.ecb.europa.eu/curConverter.do>.
Author: Steve Condylios [aut, cre]
Maintainer: Steve Condylios <steve.condylios@gmail.com>
Diff between priceR versions 0.1.6 dated 2021-05-25 and 0.1.62 dated 2022-06-30
DESCRIPTION | 15 MD5 | 11 README.md | 137 +++-- man/figures |only tests/testthat/helper-adjust_for_inflation.R | 24 tests/testthat/test_adjust_for_inflation.R | 728 +++++++++++++-------------- 6 files changed, 489 insertions(+), 426 deletions(-)
Title: Permutation Tests for Regression, (Repeated Measures)
ANOVA/ANCOVA and Comparison of Signals
Description: Functions to compute p-values based on permutation tests. Regression, ANOVA and ANCOVA, omnibus F-tests, marginal unilateral and bilateral t-tests are available. Several methods to handle nuisance variables are implemented (Kherad-Pajouh, S., & Renaud, O. (2010) <doi:10.1016/j.csda.2010.02.015> ; Kherad-Pajouh, S., & Renaud, O. (2014) <doi:10.1007/s00362-014-0617-3> ; Winkler, A. M., Ridgway, G. R., Webster, M. A., Smith, S. M., & Nichols, T. E. (2014) <doi:10.1016/j.neuroimage.2014.01.060>). An extension for the comparison of signals issued from experimental conditions (e.g. EEG/ERP signals) is provided. Several corrections for multiple testing are possible, including the cluster-mass statistic (Maris, E., & Oostenveld, R. (2007) <doi:10.1016/j.jneumeth.2007.03.024>) and the threshold-free cluster enhancement (Smith, S. M., & Nichols, T. E. (2009) <doi:10.1016/j.neuroimage.2008.03.061>).
Author: Jaromil Frossard [aut, cre],
Olivier Renaud [aut]
Maintainer: Jaromil Frossard <jaromil.frossard@gmail.com>
Diff between permuco versions 1.1.1 dated 2021-10-22 and 1.1.2 dated 2022-06-30
DESCRIPTION | 14 +++++++------- MD5 | 17 +++++++++-------- NEWS.md | 6 +++++- R/clusterlm.R | 3 ++- R/clusterlm_fix.R | 2 +- R/clusterlm_rnd.R | 2 +- R/compute_clusterdepth_tr.R |only README.md | 4 ++++ build/vignette.rds |binary src/clusterdepth.cpp | 16 ++++++++-------- 10 files changed, 37 insertions(+), 27 deletions(-)
Title: Moderation Analysis for Two-Instance Repeated Measures Designs
Description: Multiple moderation analysis for two-instance repeated measures designs, with up to three simultaneous moderators (dichotomous and/or continuous) with additive or multiplicative relationship. Includes analyses of simple slopes and conditional effects at (automatically determined or manually set) values of the moderator(s), as well as an implementation of the Johnson-Neyman procedure for determining regions of significance in single moderator models. Based on Montoya, A. K. (2018) "Moderation analysis in two-instance repeated measures designs: Probing methods and multiple moderator models" <doi:10.3758/s13428-018-1088-6> .
Author: Matthias Forstmann [aut, cre]
Maintainer: Matthias Forstmann <matthias.forstmann@uzh.ch>
Diff between mod2rm versions 0.1.0 dated 2022-05-19 and 0.2.1 dated 2022-06-30
CHANGELOG |only DESCRIPTION | 14 +- MD5 | 13 +- NAMESPACE | 17 ++ R/mod2rm.r | 292 +++++++++++++++++++++++++++++++++----------------- R/summary.mod2rm.r | 218 ++++++++++++++++++++++++++++++------- man/mod2rm.Rd | 51 ++++++-- man/summary.mod2rm.Rd | 42 +++++-- 8 files changed, 476 insertions(+), 171 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.4-1 dated 2022-03-31 and 1.4-2 dated 2022-06-30
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 3 ++- R/R.R | 14 +++++++++++++- R/ctm.R | 2 +- R/distr.R | 45 ++++++++++++++++++++++++++++++++++++++++++--- R/mlt.R | 8 ++++---- build/partial.rdb |binary inst/NEWS.Rd | 18 ++++++++++++++++++ man/R.Rd | 6 ++++-- man/ctm.Rd | 4 +++- tests/glm-Ex.R | 3 ++- tests/glm-Ex.Rout.save | 14 ++++++-------- tests/polr-Ex.R | 18 +++++++++--------- tests/polr-Ex.Rout.save | 48 ++++++++++++++++++++---------------------------- 15 files changed, 142 insertions(+), 77 deletions(-)
Title: Sample Generalized Random Dot Product Graphs in Linear Time
Description: Samples generalized random product graph, a generalization of
a broad class of network models. Given matrices X, S, and Y with with
non-negative entries, samples a matrix with expectation X S Y^T and
independent Poisson or Bernoulli entries using the fastRG algorithm of
Rohe et al. (2017) <https://www.jmlr.org/papers/v19/17-128.html>. The
algorithm first samples the number of edges and then puts them down
one-by-one. As a result it is O(m) where m is the number of edges, a
dramatic improvement over element-wise algorithms that which require
O(n^2) operations to sample a random graph, where n is the number of
nodes.
Author: Alex Hayes [aut, cre, cph] ,
Karl Rohe [aut, cph],
Jun Tao [aut],
Xintian Han [aut],
Norbert Binkiewicz [aut]
Maintainer: Alex Hayes <alexpghayes@gmail.com>
Diff between fastRG versions 0.3.0 dated 2021-02-26 and 0.3.1 dated 2022-06-30
fastRG-0.3.0/fastRG/R/expected.R |only fastRG-0.3.0/fastRG/tests/testthat/test-degenerate-sbms.R |only fastRG-0.3.1/fastRG/DESCRIPTION | 55 +-- fastRG-0.3.1/fastRG/LICENSE | 4 fastRG-0.3.1/fastRG/MD5 | 86 +++-- fastRG-0.3.1/fastRG/NAMESPACE | 18 - fastRG-0.3.1/fastRG/NEWS.md | 20 + fastRG-0.3.1/fastRG/R/directed_dcsbm.R |only fastRG-0.3.1/fastRG/R/directed_erdos_renyi.R | 71 +--- fastRG-0.3.1/fastRG/R/directed_factor_model.R | 71 ++++ fastRG-0.3.1/fastRG/R/expected-degrees.R |only fastRG-0.3.1/fastRG/R/expected-spectra.R |only fastRG-0.3.1/fastRG/R/sample_edgelist.R | 77 ++--- fastRG-0.3.1/fastRG/R/sample_igraph.R | 37 -- fastRG-0.3.1/fastRG/R/sample_sparse.R | 43 -- fastRG-0.3.1/fastRG/R/sample_tidygraph.R | 30 -- fastRG-0.3.1/fastRG/R/undirected_chung_lu.R |only fastRG-0.3.1/fastRG/R/undirected_dcsbm.R | 67 +++- fastRG-0.3.1/fastRG/R/undirected_erdos_renyi.R | 61 ---- fastRG-0.3.1/fastRG/R/undirected_factor_model.R | 53 +++ fastRG-0.3.1/fastRG/R/undirected_mmsbm.R |only fastRG-0.3.1/fastRG/R/undirected_overlapping_sbm.R |only fastRG-0.3.1/fastRG/R/undirected_planted_partition.R | 16 - fastRG-0.3.1/fastRG/R/undirected_sbm.R | 128 +------- fastRG-0.3.1/fastRG/R/utils.R |only fastRG-0.3.1/fastRG/README.md | 121 ++++---- fastRG-0.3.1/fastRG/man/chung_lu.Rd |only fastRG-0.3.1/fastRG/man/dcsbm.Rd | 41 ++ fastRG-0.3.1/fastRG/man/directed_dcsbm.Rd |only fastRG-0.3.1/fastRG/man/directed_erdos_renyi.Rd | 50 +++ fastRG-0.3.1/fastRG/man/directed_factor_model.Rd | 27 + fastRG-0.3.1/fastRG/man/eigs_sym.undirected_factor_model.Rd |only fastRG-0.3.1/fastRG/man/erdos_renyi.Rd | 34 +- fastRG-0.3.1/fastRG/man/expected_edges.Rd | 24 + fastRG-0.3.1/fastRG/man/mmsbm.Rd |only fastRG-0.3.1/fastRG/man/overlapping_sbm.Rd |only fastRG-0.3.1/fastRG/man/planted_partition.Rd | 37 +- fastRG-0.3.1/fastRG/man/reexports.Rd | 4 fastRG-0.3.1/fastRG/man/sample_edgelist.Rd | 68 ---- fastRG-0.3.1/fastRG/man/sample_edgelist.matrix.Rd | 35 +- fastRG-0.3.1/fastRG/man/sample_igraph.Rd | 73 +---- fastRG-0.3.1/fastRG/man/sample_sparse.Rd | 55 --- fastRG-0.3.1/fastRG/man/sample_tidygraph.Rd | 88 +----- fastRG-0.3.1/fastRG/man/sbm.Rd | 48 ++- fastRG-0.3.1/fastRG/man/svds.directed_factor_model.Rd |only fastRG-0.3.1/fastRG/man/svds.undirected_factor_model.Rd |only fastRG-0.3.1/fastRG/man/undirected_factor_model.Rd | 25 + fastRG-0.3.1/fastRG/tests/testthat/test-allow_self_loops.R | 23 - fastRG-0.3.1/fastRG/tests/testthat/test-degree-scaling.R | 145 +++++++++- fastRG-0.3.1/fastRG/tests/testthat/test-poisson_edges.R | 21 - fastRG-0.3.1/fastRG/tests/testthat/test-sample_tidygraph.R |only fastRG-0.3.1/fastRG/tests/testthat/test-sampling-index-bug.R |only fastRG-0.3.1/fastRG/tests/testthat/test-undirected-overlapping-sbms.R |only fastRG-0.3.1/fastRG/tests/testthat/test-undirected-sbms.R |only 54 files changed, 934 insertions(+), 822 deletions(-)
Title: Parallel Implementation of 'ETERNA 3.40' for Prediction and
Analysis of Earth Tides
Description: This is a port of 'Fortran ETERNA 3.4'
<http://igets.u-strasbg.fr/soft_and_tool.php> by H.G. Wenzel
for calculating synthetic Earth tides using the
Hartmann and Wenzel (1994) <doi:10.1029/95GL03324> or
Kudryavtsev (2004) <doi:10.1007/s00190-003-0361-2> tidal catalogs.
Author: Jonathan Kennel [aut, cre, trl],
Beth Parker [ths],
Wenzel Hans-Georg [ctb]
Maintainer: Jonathan Kennel <jkennel@uoguelph.ca>
Diff between earthtide versions 0.0.12 dated 2022-04-20 and 0.0.14 dated 2022-06-30
DESCRIPTION | 8 - MD5 | 34 ++-- NEWS.md | 3 R/datasets.R | 104 ++++++------- R/earthtide-package.R | 12 - R/earthtide_class.R | 338 ++++++++++++++++++++++----------------------- R/prepare_station.R | 4 R/sysdata.rda |binary README.md | 73 ++++++--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 5 inst/doc/introduction.Rmd | 4 inst/doc/introduction.html | 287 +++++++++++++++++++++++++++++++++++--- man/Earthtide_class.Rd | 50 +++--- man/earthtide-package.Rd | 8 - man/get_iers.Rd | 8 - vignettes/introduction.Rmd | 4 18 files changed, 603 insertions(+), 339 deletions(-)
Title: Bayesian Seemingly Unrelated Regression
Description: Bayesian seemingly unrelated regression with general variable selection and dense/sparse covariance matrix. The sparse seemingly unrelated regression is described in Bottolo et al. (2021) <doi:10.1111/rssc.12490>, the software paper is in Zhao et al. (2021) <doi:10.18637/jss.v100.i11>, and the model with random effects is described in Zhao et al. (2021) <arXiv:2101.05899>.
Author: Marco Banterle [aut],
Zhi Zhao [aut, cre],
Leonardo Bottolo [ctb],
Sylvia Richardson [ctb],
Waldir Leoncio [ctb],
Alex Lewin [aut],
Manuela Zucknick [ctb]
Maintainer: Zhi Zhao <zhi.zhao@medisin.uio.no>
Diff between BayesSUR versions 2.0-1 dated 2021-11-30 and 2.1-0 dated 2022-06-30
DESCRIPTION | 12 +++++------ MD5 | 23 +++++++++++----------- NEWS.md |only R/BayesSUR.R | 2 - R/getEstimator.R | 2 - R/plotCPO.R | 4 +-- inst/doc/BayesSUR.pdf |binary man/BayesSUR.Rd | 2 - man/plotCPO.Rd | 4 +-- src/ESS_Sampler.h | 21 +++++++++++++++++--- src/SUR_Chain.cpp | 7 ++++-- src/SUR_Chain.h | 3 ++ src/drive.cpp | 51 +++++++++++++++++++++++++++++++++++++++----------- 13 files changed, 91 insertions(+), 40 deletions(-)
Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of
satellites given a known state vector. The package includes implementations
of the SGP4 and SDP4 simplified perturbation models to propagate orbital
state vectors, as well as utilities to read TLE files and convert coordinates
between different frames of reference. Several of the functionalities of the
package (including the high-precision numerical orbit propagator) require
the coefficients and data included in the 'asteRiskData' package, available
in a 'drat' repository. To install this data package, run
'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'.
Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.com/NORAD/documentation/spacetrk.pdf>.
David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>.
Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] ,
Daniel Ayala [aut] ,
David Ruiz [aut] ,
Lara Selles Vidal [aut]
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between asteRisk versions 1.4.0 dated 2022-03-08 and 1.4.1 dated 2022-06-30
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++++++----------- NAMESPACE | 3 +++ NEWS | 3 +++ R/auxiliaryFunctions.R | 4 ++++ R/checks.R | 10 ++++++++++ R/fileParsers.R | 3 +++ R/hpop_acceleration.R | 5 +++++ inst/RJournalExamples |only inst/doc/asteRisk.html | 23 +++++++---------------- man/deg2rad.Rd |only man/rad2deg.Rd |only man/readGLONASSNavigationRINEX.Rd | 10 +++++----- man/readGPSNavigationRINEX.Rd | 10 +++++----- man/readTLE.Rd | 14 +++++++------- man/revDay2radMin.Rd |only 16 files changed, 74 insertions(+), 47 deletions(-)