Title: Handling Fuzzy Spatial Data
Description: Support for fuzzy spatial objects, their operations, and fuzzy spatial inference models based on Spatial Plateau Algebra.
It employs fuzzy set theory and fuzzy logic as foundation to deal with spatial fuzziness.
It implements underlying concepts defined in the following research papers:
(i) "Spatial Plateau Algebra: An Executable Type System for Fuzzy Spatial Data Types" <doi:10.1109/FUZZ-IEEE.2018.8491565>;
(ii) "A Systematic Approach to Creating Fuzzy Region Objects from Real Spatial Data Sets" <doi:10.1109/FUZZ-IEEE.2019.8858878>;
(iii) "Fuzzy Inference on Fuzzy Spatial Objects (FIFUS) for Spatial Decision Support Systems" <doi:10.1109/FUZZ-IEEE.2017.8015707>.
Author: Anderson Carniel [rth, aut, cre]
,
Felippe Galdino [rtm, aut] ,
Juliana Philippsen [rtm, aut],
Markus Schneider [rth]
Maintainer: Anderson Carniel <accarniel@ufscar.br>
Diff between fsr versions 1.0.1 dated 2022-01-25 and 1.0.2 dated 2022-07-04
DESCRIPTION | 10 - MD5 | 12 +- NEWS.md | 15 ++ R/builder_functions.R | 96 +++++++++++----- R/spa_functions.R | 292 ++++++++++++++++++++++++++------------------------ README.md | 8 - man/spa_creator.Rd | 12 +- 7 files changed, 256 insertions(+), 189 deletions(-)
Title: Syntax Highlighting and Automatic Linking
Description: Syntax highlighting of R code, specifically designed for the
needs of 'RMarkdown' packages like 'pkgdown', 'hugodown', and
'bookdown'. It includes linking of function calls to their
documentation on the web, and automatic translation of ANSI escapes in
output to the equivalent HTML.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between downlit versions 0.4.1 dated 2022-06-24 and 0.4.2 dated 2022-07-04
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/link.R | 14 +++++++++++++- R/topic-index.R | 9 +++++++++ R/zzz.R | 3 +++ tests/testthat/test-link.R | 20 +++++++++++++++----- tests/testthat/test-topic-index.R | 5 +++++ 8 files changed, 64 insertions(+), 18 deletions(-)
Title: Transformation Models with Mixed Effects
Description: Likelihood-based estimation of mixed-effects transformation models using the Template
Model Builder ('TMB', Kristensen et al., 2016, <doi:10.18637/jss.v070.i05>). The technical details
of transformation models are given in Hothorn et al. (2018, <doi:10.1111/sjos.12291>). Likelihood
contributions of exact, randomly censored (left, right, interval) and truncated observations are
supported. The random effects are assumed to be normally distributed on the scale of the
transformation function, the marginal likelihood is evaluated using the Laplace approximation,
and the gradients are calculated with automatic differentiation (Tamasi and Hothorn, 2021,
<doi:10.32614/RJ-2021-075>). Penalized smooth shift terms can be defined using 'mgcv'.
Author: Balint Tamasi [aut, cre] ,
Torsten Hothorn [ctb]
Maintainer: Balint Tamasi <balint.tamasi@uzh.ch>
Diff between tramME versions 1.0.1 dated 2022-04-25 and 1.0.2 dated 2022-07-04
tramME-1.0.1/tramME/man/dot-cctm.Rd |only tramME-1.0.1/tramME/man/dot-idx.Rd |only tramME-1.0.1/tramME/man/dot-parallel_default.Rd |only tramME-1.0.1/tramME/man/edf_smooth.Rd |only tramME-1.0.1/tramME/man/fitmod.Rd |only tramME-1.0.1/tramME/man/fitmod.tramME.Rd |only tramME-1.0.1/tramME/man/is.pd.Rd |only tramME-1.0.1/tramME/man/offset-set-.tramME.Rd |only tramME-1.0.1/tramME/man/offset-set.Rd |only tramME-1.0.1/tramME/man/offset.Rd |only tramME-1.0.1/tramME/man/offset.default.Rd |only tramME-1.0.1/tramME/man/offset.tramME.Rd |only tramME-1.0.1/tramME/man/optim_tramTMB.Rd |only tramME-1.0.1/tramME/man/smooth_terms.Rd |only tramME-1.0.1/tramME/man/weights-set-.tramME.Rd |only tramME-1.0.1/tramME/man/weights-set.Rd |only tramME-1.0.1/tramME/man/weights.tramME.Rd |only tramME-1.0.1/tramME/vignettes/algae_mcdf.rda |only tramME-1.0.2/tramME/DESCRIPTION | 10 tramME-1.0.2/tramME/MD5 | 59 tramME-1.0.2/tramME/NAMESPACE | 3 tramME-1.0.2/tramME/NEWS.md | 5 tramME-1.0.2/tramME/R/methods.R | 92 - tramME-1.0.2/tramME/R/smooth.R | 14 tramME-1.0.2/tramME/R/tramTMB.R | 26 tramME-1.0.2/tramME/R/util.R | 166 - tramME-1.0.2/tramME/build/vignette.rds |binary tramME-1.0.2/tramME/inst/doc/RJ-2021-075.pdf |binary tramME-1.0.2/tramME/inst/doc/mixed-effects-additive-models.R | 340 +++- tramME-1.0.2/tramME/inst/doc/mixed-effects-additive-models.Rnw | 844 +++++++++- tramME-1.0.2/tramME/inst/doc/mixed-effects-additive-models.pdf |binary tramME-1.0.2/tramME/man/edf_smooth.tramME.Rd | 1 tramME-1.0.2/tramME/man/smooth_terms.tramME.Rd | 1 tramME-1.0.2/tramME/tests/methods.R | 30 tramME-1.0.2/tramME/vignettes/CS-resid.rda |binary tramME-1.0.2/tramME/vignettes/mixed-effects-additive-models.Rnw | 844 +++++++++- tramME-1.0.2/tramME/vignettes/mosquito_models.rda |binary tramME-1.0.2/tramME/vignettes/ref.bib | 159 + tramME-1.0.2/tramME/vignettes/sim1.rda |only tramME-1.0.2/tramME/vignettes/sim2.rda |only tramME-1.0.2/tramME/vignettes/urchin.rda |only 41 files changed, 2219 insertions(+), 375 deletions(-)
Title: Power Calculation for Stepped Wedge Designs
Description: Tools for power and sample size
calculation as well as design diagnostics for
longitudinal mixed model settings, with a focus on stepped wedge designs.
All calculations are oracle estimates i.e. assume random effect variances
to be known (or guessed) in advance.
The method is introduced in Hussey and Hughes (2007) <doi:10.1016/j.cct.2006.05.007>,
extensions are discussed in Li et al. (2020) <doi:10.1177/0962280220932962>.
Author: Philipp Mildenberger [aut, cre]
,
Federico Marini [ctb]
Maintainer: Philipp Mildenberger <pmildenb@uni-mainz.de>
Diff between SteppedPower versions 0.3.1 dated 2021-12-16 and 0.3.2 dated 2022-07-04
SteppedPower-0.3.1/SteppedPower/man/compute_wlsPower.Rd |only SteppedPower-0.3.1/SteppedPower/man/plot.wlsPower.Rd |only SteppedPower-0.3.1/SteppedPower/man/print.wlsPower.Rd |only SteppedPower-0.3.1/SteppedPower/man/wlsPower.Rd |only SteppedPower-0.3.2/SteppedPower/DESCRIPTION | 8 SteppedPower-0.3.2/SteppedPower/LICENSE | 4 SteppedPower-0.3.2/SteppedPower/MD5 | 50 SteppedPower-0.3.2/SteppedPower/NAMESPACE | 9 SteppedPower-0.3.2/SteppedPower/NEWS.md | 14 SteppedPower-0.3.2/SteppedPower/R/InformationContent.R |only SteppedPower-0.3.2/SteppedPower/R/closed_formulae.R | 10 SteppedPower-0.3.2/SteppedPower/R/construct_CovMat.R | 2 SteppedPower-0.3.2/SteppedPower/R/construct_DesMat.R | 2 SteppedPower-0.3.2/SteppedPower/R/wlsPower.R | 188 SteppedPower-0.3.2/SteppedPower/README.md | 2 SteppedPower-0.3.2/SteppedPower/build/vignette.rds |binary SteppedPower-0.3.2/SteppedPower/inst/doc/Getting_Started.R | 50 SteppedPower-0.3.2/SteppedPower/inst/doc/Getting_Started.Rmd | 64 SteppedPower-0.3.2/SteppedPower/inst/doc/Getting_Started.html | 2721 +++++++++- SteppedPower-0.3.2/SteppedPower/man/VarClosed_Kasza.Rd | 8 SteppedPower-0.3.2/SteppedPower/man/VarClosed_Li.Rd | 2 SteppedPower-0.3.2/SteppedPower/man/compute_InfoContent.Rd |only SteppedPower-0.3.2/SteppedPower/man/compute_glsPower.Rd |only SteppedPower-0.3.2/SteppedPower/man/glsPower.Rd |only SteppedPower-0.3.2/SteppedPower/man/plot.glsPower.Rd |only SteppedPower-0.3.2/SteppedPower/man/plot_CellWeights.Rd | 9 SteppedPower-0.3.2/SteppedPower/man/plot_InfoContent.Rd | 7 SteppedPower-0.3.2/SteppedPower/man/print.glsPower.Rd |only SteppedPower-0.3.2/SteppedPower/tests/testthat.R | 8 SteppedPower-0.3.2/SteppedPower/tests/testthat/test_CovMat.R | 44 SteppedPower-0.3.2/SteppedPower/vignettes/Getting_Started.Rmd | 64 31 files changed, 2847 insertions(+), 419 deletions(-)
Title: Implementation of the Potential Model
Description: Provides functions to compute the potential model as defined by
Stewart (1941) <doi:10.1126/science.93.2404.89>. Several options are available
to customize the model, such as the possibility to fine-tune the distance
friction functions or to use custom distance matrices. Some computations are
parallelized to improve their efficiency.
Author: Timothee Giraud [cre, aut] ,
Hadrien Commenges [aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between potential versions 0.1.0 dated 2020-11-18 and 0.2.0 dated 2022-07-04
DESCRIPTION | 14 MD5 | 43 +- NAMESPACE | 5 NEWS.md |only R/create_grid.R | 1 R/create_matrix.R | 3 R/equipotential.R | 76 ---- R/potential.R | 5 README.md | 61 ++- build/partial.rdb |only build/vignette.rds |binary inst/doc/potential.R | 155 ++++----- inst/doc/potential.Rmd | 155 ++++----- inst/doc/potential.html | 779 +++++++++++++++++++++++++++------------------- inst/tinytest/test_curv.R | 34 +- man/create_matrix.Rd | 2 man/equipotential.Rd | 15 man/figures/demo-1.png |binary man/figures/demox-1.png |only man/figures/logo.png |only man/potential.Rd | 4 vignettes/potential.Rmd | 155 ++++----- vignettes/references.bib | 2 vignettes/smooth-1.png |binary vignettes/web_only |only 25 files changed, 832 insertions(+), 677 deletions(-)
Title: Prepare American Psychological Association Journal Articles with
R Markdown
Description: Tools to create dynamic, submission-ready manuscripts, which
conform to American Psychological Association manuscript guidelines. We
provide R Markdown document formats for manuscripts (PDF and Word) and
revision letters (PDF). Helper functions facilitate reporting statistical
analyses or create publication-ready tables and plots.
Author: Frederik Aust [aut, cre] ,
Marius Barth [aut] ,
Birk Diedenhofen [ctb],
Christoph Stahl [ctb],
Joseph V. Casillas [ctb],
Rudolf Siegel [ctb]
Maintainer: Frederik Aust <frederik.aust@uni-koeln.de>
Diff between papaja versions 0.1.0 dated 2022-06-23 and 0.1.1 dated 2022-07-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/partial.rdb |binary inst/NEWS.md | 6 +++++- inst/doc/extending_apa_print.html | 12 ++++++------ tests/testthat/test_custom_effect_sizes.R | 22 ++++++++++++++++------ 6 files changed, 36 insertions(+), 22 deletions(-)
Title: Algorithms for Bundling Edges in Networks and Visualizing Flow
and Metro Maps
Description: Implements several algorithms for bundling edges in networks and flow and metro map layouts. This includes force directed edge bundling <doi:10.1111/j.1467-8659.2009.01450.x>, a flow algorithm based on Steiner trees<doi:10.1080/15230406.2018.1437359> and a multicriteria optimization method for metro map layouts <doi:10.1109/TVCG.2010.24>.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between edgebundle versions 0.3.1 dated 2022-01-23 and 0.4.0 dated 2022-07-04
DESCRIPTION | 8 +++---- MD5 | 12 +++++------ NAMESPACE | 2 + NEWS.md | 5 ++++ R/flow_tnss.R | 55 +++++++++++++++++++++++++++++++++++++++++++++++++--- man/tnss_tree.Rd | 2 - src/forceBundle.cpp | 4 +-- 7 files changed, 72 insertions(+), 16 deletions(-)
Title: R to Symbolic Data Analysis
Description: Symbolic Data Analysis (SDA) was proposed by professor Edwin Diday in 1987, the main purpose of SDA is to substitute the set of rows (cases) in the data table for a concept (second order statistical unit). This package implements, to the symbolic case, certain techniques of automatic classification, as well as some linear models.
Author: Oldemar Rodriguez [aut, cre],
Jose Emmanuel Chacon [cph],
Carlos Aguero [cph],
Jorge Arce [cph]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between RSDA versions 3.0.9 dated 2021-01-27 and 3.0.12 dated 2022-07-04
RSDA-3.0.12/RSDA/DESCRIPTION | 12 RSDA-3.0.12/RSDA/MD5 | 76 +- RSDA-3.0.12/RSDA/NAMESPACE | 2 RSDA-3.0.12/RSDA/R/RSDA.R | 4 RSDA-3.0.12/RSDA/R/centers_interval.R | 6 RSDA-3.0.12/RSDA/R/dist_vect.R | 6 RSDA-3.0.12/RSDA/R/dist_vect_matrix.R | 6 RSDA-3.0.12/RSDA/R/neighbors_vertex.R | 6 RSDA-3.0.12/RSDA/R/norm_vect.R | 6 RSDA-3.0.12/RSDA/R/sds_to_rsda.R | 690 ++++++++++++------------ RSDA-3.0.12/RSDA/R/sym_interval_pc.R | 6 RSDA-3.0.12/RSDA/R/sym_interval_pc_limits.R | 6 RSDA-3.0.12/RSDA/R/sym_var.R | 3 RSDA-3.0.12/RSDA/R/symbolic_objects.R | 12 RSDA-3.0.12/RSDA/R/variance_princ_curve.R | 6 RSDA-3.0.12/RSDA/R/vertex_interval.R | 6 RSDA-3.0.12/RSDA/build/vignette.rds |binary RSDA-3.0.12/RSDA/inst/doc/introduction.R | 16 RSDA-3.0.12/RSDA/inst/doc/introduction.Rmd | 16 RSDA-3.0.12/RSDA/inst/doc/introduction.html | 364 ++++++++++-- RSDA-3.0.12/RSDA/man/RSDA.Rd | 4 RSDA-3.0.12/RSDA/man/SDS.to.RSDA.Rd | 4 RSDA-3.0.12/RSDA/man/Symbolic_median.Rd |only RSDA-3.0.12/RSDA/man/centers.interval.Rd | 6 RSDA-3.0.12/RSDA/man/cor.Rd | 3 RSDA-3.0.12/RSDA/man/cov.Rd | 3 RSDA-3.0.12/RSDA/man/dist.vect.Rd | 6 RSDA-3.0.12/RSDA/man/dist.vect.matrix.Rd | 6 RSDA-3.0.12/RSDA/man/neighbors.vertex.Rd | 6 RSDA-3.0.12/RSDA/man/norm.vect.Rd | 6 RSDA-3.0.12/RSDA/man/sd.Rd | 3 RSDA-3.0.12/RSDA/man/sym.interval.pc.Rd | 6 RSDA-3.0.12/RSDA/man/sym.interval.pc.limits.Rd | 6 RSDA-3.0.12/RSDA/man/sym.var.Rd | 2 RSDA-3.0.12/RSDA/man/var.Rd | 3 RSDA-3.0.12/RSDA/man/variance.princ.curve.Rd | 6 RSDA-3.0.12/RSDA/man/vertex.interval.Rd | 6 RSDA-3.0.12/RSDA/vignettes/hani3101.sds | 96 +-- RSDA-3.0.12/RSDA/vignettes/introduction.Rmd | 16 RSDA-3.0.9/RSDA/man/median.symbolic_interval.Rd |only 40 files changed, 837 insertions(+), 600 deletions(-)
Title: Spatial and Spatio-Temporal Semiparametric Regression Models
with Spatial Lags
Description: Estimation and inference of spatial and spatio-temporal
semiparametric models including spatial or spatio-temporal non-parametric
trends, parametric and non-parametric covariates and, possibly, a spatial
lag for the dependent variable and temporal correlation in the noise.
The spatio-temporal trend can be decomposed in ANOVA way including main and
interaction functional terms. Use of SAP algorithm to estimate the spatial
or spatio-temporal trend and non-parametric covariates. The methodology of
these models can be found in next references
Basile, R. et al. (2014), <doi:10.1016/j.jedc.2014.06.011>;
Rodriguez-Alvarez, M.X. et al. (2015) <doi:10.1007/s11222-014-9464-2> and,
particularly referred to the focus of the package, Minguez, R.,
Basile, R. and Durban, M. (2020) <doi:10.1007/s10260-019-00492-8>.
Author: Roman Minguez [aut, cre] ,
Roberto Basile [aut] ,
Maria Durban [aut] ,
Gonzalo Espana-Heredia [aut]
Maintainer: Roman Minguez <roman.minguez@uclm.es>
Diff between pspatreg versions 1.0.3 dated 2022-06-07 and 1.0.4 dated 2022-07-04
DESCRIPTION | 8 - MD5 | 26 +++- NAMESPACE | 250 ++++++++++++++++++++-------------------- R/datasets.R | 39 ++++++ R/plot_sp3d.R | 1 data/prod_it.RData |only demo |only inst/doc/A_pspatregPackage.html | 4 man/lwsp_it.Rd |only man/plot_sp3d.Rd | 1 man/prod_it.Rd |only 11 files changed, 190 insertions(+), 139 deletions(-)
More information about IntervalQuestionStat at CRAN
Permanent link
Title: Extending 'dendrogram' Functionality in R
Description: Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Author: Tal Galili [aut, cre, cph] ,
Yoav Benjamini [ths],
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] ,
Marco Gallotta [ctb] ,
Johan Renaudie [ctb] ,
The R Core Team [ctb] ,
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvat [...truncated...]
Maintainer: Tal Galili <tal.galili@gmail.com>
Diff between dendextend versions 1.15.2 dated 2021-10-28 and 1.16.0 dated 2022-07-04
ChangeLog | 117 ++ DESCRIPTION | 17 MD5 | 78 - NEWS | 18 NEWS.md | 18 R/ape.R | 24 R/bk_method.R | 13 R/branches_attr_by.R | 1 R/color_branches.R | 15 R/cut_lower_fun.R | 13 R/cutree.dendrogram.R | 16 R/data.R | 34 R/dendlist.R | 2 R/pvclust.R | 21 R/set.dendrogram.R | 28 R/zzz.R | 86 - README.md | 7 build/vignette.rds |binary inst/doc/Cluster_Analysis.Rmd | 2 inst/doc/Cluster_Analysis.html | 995 ++++++++++++-------- inst/doc/FAQ.R | 1 inst/doc/FAQ.Rmd | 1 inst/doc/FAQ.html | 701 +++++++------- inst/doc/Quick_Introduction.html | 97 - inst/doc/dendextend.R | 15 inst/doc/dendextend.Rmd | 21 inst/doc/dendextend.html | 1920 +++++++++++++++++++++++---------------- man/FM_index_permutation.Rd | 11 man/as.phylo.dendrogram.Rd | 24 man/branches_attr_by_clusters.Rd | 1 man/color_branches.Rd | 4 man/cut_lower_fun.Rd | 11 man/heights_per_k.dendrogram.Rd | 14 man/khan.Rd | 34 man/na_locf.Rd | 21 man/set.Rd | 37 tests/testthat/test-rotate.R | 15 vignettes/Cluster_Analysis.Rmd | 2 vignettes/FAQ.Rmd | 1 vignettes/dendextend.Rmd | 21 40 files changed, 2565 insertions(+), 1892 deletions(-)
Title: Read and Write CSV Files with Selected Conventions
Description: Reads and writes CSV with selected conventions.
Uses the same generic function for reading and writing to promote consistent formats.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between csv versions 0.6.1 dated 2021-07-13 and 0.6.2 dated 2022-07-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/csv.R | 6 +++--- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Extract and Visualize Motif Information from MEME Software
Description: Extract and visualize motif information from XML file from MEME software.
In biology, a motif is a nucleotide or amino acid sequence pattern that is widespread
and usually assumed to be related to specifical biological functions.
There exist many software was used to discover motif sequences from a set of nucleotide
or amino acid sequences. MEME is almost the most used software to detect motif.
It's difficult for biologists to extract and visualize the location of a motif
on sequences from the results from MEME software.
Author: Xiang LI
Maintainer: Xiang LI <lixiang117423@foxmail.com>
Diff between ggmotif versions 0.1.3 dated 2022-06-19 and 0.1.4 dated 2022-07-04
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/getMotifFromMEME.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Latent Variable Analysis
Description: Fit a variety of latent variable models, including confirmatory
factor analysis, structural equation modeling and latent growth curve models.
Author: Yves Rosseel [aut, cre] ,
Terrence D. Jorgensen [aut] ,
Nicholas Rockwood [aut] ,
Daniel Oberski [ctb],
Jarrett Byrnes [ctb],
Leonard Vanbrabant [ctb],
Victoria Savalei [ctb],
Ed Merkle [ctb],
Michael Hallquist [ctb],
Mijke Rhemtulla [ctb],
Myrsini K [...truncated...]
Maintainer: Yves Rosseel <Yves.Rosseel@UGent.be>
Diff between lavaan versions 0.6-11 dated 2022-03-31 and 0.6-12 dated 2022-07-04
lavaan-0.6-11/lavaan/R/lav_object_print.R |only lavaan-0.6-11/lavaan/README |only lavaan-0.6-12/lavaan/DESCRIPTION | 6 lavaan-0.6-12/lavaan/MD5 | 108 +- lavaan-0.6-12/lavaan/NAMESPACE | 1 lavaan-0.6-12/lavaan/R/lav_bootstrap.R | 231 +++- lavaan-0.6-12/lavaan/R/lav_bootstrap_lrt.R | 47 lavaan-0.6-12/lavaan/R/lav_data.R | 5 lavaan-0.6-12/lavaan/R/lav_data_patterns.R | 147 +- lavaan-0.6-12/lavaan/R/lav_data_print.R | 220 ++-- lavaan-0.6-12/lavaan/R/lav_fit_measures.R | 48 lavaan-0.6-12/lavaan/R/lav_matrix.R | 16 lavaan-0.6-12/lavaan/R/lav_model.R | 34 lavaan-0.6-12/lavaan/R/lav_model_compute.R | 8 lavaan-0.6-12/lavaan/R/lav_model_estimate.R | 50 lavaan-0.6-12/lavaan/R/lav_model_gradient.R | 77 + lavaan-0.6-12/lavaan/R/lav_model_h1_information.R | 63 - lavaan-0.6-12/lavaan/R/lav_model_implied.R | 72 + lavaan-0.6-12/lavaan/R/lav_model_information.R | 3 lavaan-0.6-12/lavaan/R/lav_model_loglik.R | 86 + lavaan-0.6-12/lavaan/R/lav_model_vcov.R | 19 lavaan-0.6-12/lavaan/R/lav_modification.R | 4 lavaan-0.6-12/lavaan/R/lav_mvnorm_cluster.R | 2 lavaan-0.6-12/lavaan/R/lav_mvreg_cluster.R | 1071 +++++++++++++++++++-- lavaan-0.6-12/lavaan/R/lav_object_generate.R | 5 lavaan-0.6-12/lavaan/R/lav_object_inspect.R | 21 lavaan-0.6-12/lavaan/R/lav_object_methods.R | 181 ++- lavaan-0.6-12/lavaan/R/lav_object_summary.R |only lavaan-0.6-12/lavaan/R/lav_objective.R | 46 lavaan-0.6-12/lavaan/R/lav_options.R | 78 - lavaan-0.6-12/lavaan/R/lav_partable.R | 113 +- lavaan-0.6-12/lavaan/R/lav_partable_check.R | 4 lavaan-0.6-12/lavaan/R/lav_partable_flat.R | 180 ++- lavaan-0.6-12/lavaan/R/lav_partable_unrestricted.R | 7 lavaan-0.6-12/lavaan/R/lav_partable_utils.R | 11 lavaan-0.6-12/lavaan/R/lav_partable_vnames.R | 27 lavaan-0.6-12/lavaan/R/lav_print.R | 324 ++++++ lavaan-0.6-12/lavaan/R/lav_representation_lisrel.R | 129 +- lavaan-0.6-12/lavaan/R/lav_representation_ram.R | 10 lavaan-0.6-12/lavaan/R/lav_residuals.R | 1 lavaan-0.6-12/lavaan/R/lav_samplestats.R | 350 ++++++ lavaan-0.6-12/lavaan/R/lav_samplestats_gamma.R | 15 lavaan-0.6-12/lavaan/R/lav_samplestats_icov.R | 3 lavaan-0.6-12/lavaan/R/lav_standardize.R | 12 lavaan-0.6-12/lavaan/R/lav_start.R | 137 ++ lavaan-0.6-12/lavaan/R/lav_syntax.R | 17 lavaan-0.6-12/lavaan/R/lav_test.R | 37 lavaan-0.6-12/lavaan/R/lav_test_LRT.R | 11 lavaan-0.6-12/lavaan/R/lav_test_browne.R |only lavaan-0.6-12/lavaan/R/lav_test_diff.R | 18 lavaan-0.6-12/lavaan/R/lav_test_print.R |only lavaan-0.6-12/lavaan/R/lav_utils.R | 40 lavaan-0.6-12/lavaan/R/xxx_lavaan.R | 90 + lavaan-0.6-12/lavaan/README.md |only lavaan-0.6-12/lavaan/build/partial.rdb |binary lavaan-0.6-12/lavaan/man/bootstrap.Rd | 34 lavaan-0.6-12/lavaan/man/lavOptions.Rd | 29 lavaan-0.6-12/lavaan/man/model.syntax.Rd | 15 58 files changed, 3467 insertions(+), 796 deletions(-)
Title: Extra Graphical Utilities Based on Lattice
Description: Building on the infrastructure provided by the lattice
package, this package provides several new high-level
functions and methods, as well as additional utilities
such as panel and axis annotation functions.
Author: Deepayan Sarkar <deepayan.sarkar@r-project.org>, Felix Andrews <felix@nfrac.org>
Maintainer: Deepayan Sarkar <deepayan.sarkar@r-project.org>
Diff between latticeExtra versions 0.6-29 dated 2019-12-19 and 0.6-30 dated 2022-07-04
latticeExtra-0.6-29/latticeExtra/data/EastAuClimate.txt |only latticeExtra-0.6-30/latticeExtra/DESCRIPTION | 13 - latticeExtra-0.6-30/latticeExtra/MD5 | 43 ++--- latticeExtra-0.6-30/latticeExtra/NAMESPACE | 1 latticeExtra-0.6-30/latticeExtra/R/c.trellis.R | 3 latticeExtra-0.6-30/latticeExtra/R/tileplot.R | 27 +-- latticeExtra-0.6-30/latticeExtra/data/EastAuClimate.txt.gz |only latticeExtra-0.6-30/latticeExtra/inst/NEWS | 6 latticeExtra-0.6-30/latticeExtra/man/SeatacWeather.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/USAge.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/USCancerRates.Rd | 6 latticeExtra-0.6-30/latticeExtra/man/ancestry.Rd | 4 latticeExtra-0.6-30/latticeExtra/man/biocAccess.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/c.trellis.Rd | 56 +++--- latticeExtra-0.6-30/latticeExtra/man/gvhd10.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/horizonplot.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/mapplot.Rd | 107 ++++++------- latticeExtra-0.6-30/latticeExtra/man/panel.voronoi.Rd | 43 +++-- latticeExtra-0.6-30/latticeExtra/man/panel.xblocks.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/postdoc.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/rootogram.Rd | 2 latticeExtra-0.6-30/latticeExtra/man/theEconomist.theme.Rd | 6 latticeExtra-0.6-30/latticeExtra/man/tileplot.Rd | 4 latticeExtra-0.6-30/latticeExtra/tests/c.trellis.R |only 24 files changed, 185 insertions(+), 150 deletions(-)
Title: Variational Mode Decomposition
Description: 'RcppArmadillo' implementation for the Matlab code of the 'Variational Mode Decomposition' and 'Two-Dimensional Variational Mode Decomposition'. For more information, see (i) 'Variational Mode Decomposition' by K. Dragomiretskiy and D. Zosso in IEEE Transactions on Signal Processing, vol. 62, no. 3, pp. 531-544, Feb.1, 2014, <doi:10.1109/TSP.2013.2288675>; (ii) 'Two-Dimensional Variational Mode Decomposition' by Dragomiretskiy, K., Zosso, D. (2015), In: Tai, XC., Bae, E., Chan, T.F., Lysaker, M. (eds) Energy Minimization Methods in Computer Vision and Pattern Recognition. EMMCVPR 2015. Lecture Notes in Computer Science, vol 8932. Springer, <doi:10.1007/978-3-319-14612-6_15>.
Author: Lampros Mouselimis [aut, cre] ,
Dominique Zosso [cph] ,
Konstantin Dragomiretskiy [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between VMDecomp versions 1.0.0 dated 2022-06-09 and 1.0.1 dated 2022-07-04
DESCRIPTION | 13 ++-- MD5 | 11 ++-- NAMESPACE | 3 + NEWS.md | 6 ++ R/estimate_K.R |only README.md | 106 ++++++++++++++++++++++++++++++++++++++- man/estimate_k_modes.Rd |only tests/testthat/test-estimate_K.R |only 8 files changed, 126 insertions(+), 13 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.15 dated 2022-03-14 and 2.4.16 dated 2022-07-04
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/efronRSquared.r | 5 +++-- R/pairwiseNominalIndependence.r | 31 ++++++++++++++++++++++++++----- R/scheirerRayHare.r | 5 ++++- man/efronRSquared.Rd | 5 +++-- man/pairwiseNominalIndependence.Rd | 14 +++++++++++++- man/scheirerRayHare.Rd | 3 +++ 8 files changed, 63 insertions(+), 22 deletions(-)
Title: 'Explorable Multiverse' Data Analysis and Reports
Description: Implement 'multiverse' style analyses (Steegen S., Tuerlinckx F, Gelman A., Vanpaemal, W., 2016)
<doi:10.1177/1745691616658637>, (Dragicevic P., Jansen Y., Sarma A., Kay M., Chevalier F., 2019) <doi:10.1145/3290605.3300295>
to show the robustness of statistical inference. 'Multiverse analysis' is a philosophy of
statistical reporting where paper authors report the outcomes of many different statistical
analyses in order to show how fragile or robust their findings are.
The 'multiverse' package (Sarma A., Kale A., Moon M., Taback N., Chevalier F., Hullman J., Kay M., 2021) <doi:10.31219/osf.io/yfbwm>
allows users to concisely and flexibly implement 'multiverse-style'
analysis, which involve declaring alternate ways of performing an analysis step, in R and R Notebooks.
Author: Abhraneel Sarma [aut, cre],
Matthew Kay [aut],
Michael Moon [ctb],
Mark Miller [ctb],
Alex Kale [ctb],
Nathan Taback [ctb],
Fanny Chevalier [ctb],
Jessica Hullman [ctb],
Pierre Dragicevic [ctb],
Yvonne Jansen [ctb]
Maintainer: Abhraneel Sarma <abhraneel@u.northwestern.edu>
Diff between multiverse versions 0.5.0 dated 2021-06-01 and 0.6.1 dated 2022-07-04
multiverse-0.5.0/multiverse/R/conditions.R |only multiverse-0.5.0/multiverse/inst/css |only multiverse-0.5.0/multiverse/inst/js |only multiverse-0.5.0/multiverse/man/figures/model-1-vis-1.gif |only multiverse-0.5.0/multiverse/man/figures/model-3-vis-1.gif |only multiverse-0.5.0/multiverse/man/figures/model-4-vis-1.gif |only multiverse-0.5.0/multiverse/man/figures/model-5-vis-1.gif |only multiverse-0.5.0/multiverse/man/figures/model-6-vis-1.gif |only multiverse-0.5.0/multiverse/tests/testthat/test-conditions.R |only multiverse-0.5.0/multiverse/vignettes/multiverse-addins.png |only multiverse-0.6.1/multiverse/DESCRIPTION | 25 multiverse-0.6.1/multiverse/MD5 | 166 multiverse-0.6.1/multiverse/NAMESPACE | 6 multiverse-0.6.1/multiverse/NEWS.md | 16 multiverse-0.6.1/multiverse/R/accessors.R | 17 multiverse-0.6.1/multiverse/R/branch.R | 135 multiverse-0.6.1/multiverse/R/conditionals.R |only multiverse-0.6.1/multiverse/R/durante.R | 7 multiverse-0.6.1/multiverse/R/execute.R | 105 multiverse-0.6.1/multiverse/R/extract.R | 6 multiverse-0.6.1/multiverse/R/get_code.R | 9 multiverse-0.6.1/multiverse/R/inside.R | 117 multiverse-0.6.1/multiverse/R/multiverse-package.R | 8 multiverse-0.6.1/multiverse/R/multiverse.R | 17 multiverse-0.6.1/multiverse/R/multiverse_code_block.R | 31 multiverse-0.6.1/multiverse/R/parse_multiverse.R | 41 multiverse-0.6.1/multiverse/R/utils.R | 28 multiverse-0.6.1/multiverse/R/vis_correlation.R | 2 multiverse-0.6.1/multiverse/README.md | 1221 multiverse-0.6.1/multiverse/build/partial.rdb |binary multiverse-0.6.1/multiverse/build/vignette.rds |binary multiverse-0.6.1/multiverse/inst/doc/branch.R | 370 multiverse-0.6.1/multiverse/inst/doc/branch.Rmd | 407 multiverse-0.6.1/multiverse/inst/doc/branch.html | 929 multiverse-0.6.1/multiverse/inst/doc/conditions.R | 952 multiverse-0.6.1/multiverse/inst/doc/conditions.Rmd | 2 multiverse-0.6.1/multiverse/inst/doc/conditions.html | 343 multiverse-0.6.1/multiverse/inst/doc/durante-multiverse-analysis.R | 51 multiverse-0.6.1/multiverse/inst/doc/durante-multiverse-analysis.Rmd | 29 multiverse-0.6.1/multiverse/inst/doc/durante-multiverse-analysis.html | 701 multiverse-0.6.1/multiverse/inst/doc/execution-multiverse.R |only multiverse-0.6.1/multiverse/inst/doc/execution-multiverse.Rmd |only multiverse-0.6.1/multiverse/inst/doc/execution-multiverse.html |only multiverse-0.6.1/multiverse/inst/doc/frequentist-multiverse-analysis.R | 1012 multiverse-0.6.1/multiverse/inst/doc/frequentist-multiverse-analysis.Rmd | 21 multiverse-0.6.1/multiverse/inst/doc/frequentist-multiverse-analysis.html | 594 multiverse-0.6.1/multiverse/inst/doc/hurricane.R |36391 ---------- multiverse-0.6.1/multiverse/inst/doc/hurricane.Rmd | 171 multiverse-0.6.1/multiverse/inst/doc/hurricane.html | 328 multiverse-0.6.1/multiverse/inst/doc/multiverse-in-rmd.R | 2 multiverse-0.6.1/multiverse/inst/doc/multiverse-in-rmd.Rmd | 21 multiverse-0.6.1/multiverse/inst/doc/multiverse-in-rmd.html | 396 multiverse-0.6.1/multiverse/inst/doc/visualising-multiverse.R | 33 multiverse-0.6.1/multiverse/inst/doc/visualising-multiverse.Rmd | 7 multiverse-0.6.1/multiverse/inst/doc/visualising-multiverse.html | 353 multiverse-0.6.1/multiverse/man/accessors.Rd | 4 multiverse-0.6.1/multiverse/man/branch.Rd | 135 multiverse-0.6.1/multiverse/man/conditionals.Rd |only multiverse-0.6.1/multiverse/man/durante.Rd | 7 multiverse-0.6.1/multiverse/man/execute.Rd | 14 multiverse-0.6.1/multiverse/man/extract_variables.Rd | 6 multiverse-0.6.1/multiverse/man/figures/00-default-analysis.png |only multiverse-0.6.1/multiverse/man/figures/00-reporting-strategies.png |only multiverse-0.6.1/multiverse/man/figures/02-branch.png |only multiverse-0.6.1/multiverse/man/figures/05-conditions.png |only multiverse-0.6.1/multiverse/man/figures/06-expand.png |only multiverse-0.6.1/multiverse/man/figures/durante-regression.gif |only multiverse-0.6.1/multiverse/man/figures/durante-regression2.gif |only multiverse-0.6.1/multiverse/man/figures/one_universe_result-1.png |only multiverse-0.6.1/multiverse/man/figures/universe-summary-1.png |binary multiverse-0.6.1/multiverse/man/get_code.Rd | 3 multiverse-0.6.1/multiverse/man/inside.Rd | 42 multiverse-0.6.1/multiverse/man/mulitiverse_code_block.Rd | 32 multiverse-0.6.1/multiverse/man/multiverse-package.Rd | 8 multiverse-0.6.1/multiverse/man/multiverse.Rd | 11 multiverse-0.6.1/multiverse/man/parse_multiverse.Rd | 6 multiverse-0.6.1/multiverse/man/vis_correlation.Rd | 2 multiverse-0.6.1/multiverse/tests/testthat/test-accessors.R | 65 multiverse-0.6.1/multiverse/tests/testthat/test-conditionals.R |only multiverse-0.6.1/multiverse/tests/testthat/test-execute.R | 154 multiverse-0.6.1/multiverse/tests/testthat/test-get_code.R | 5 multiverse-0.6.1/multiverse/tests/testthat/test-inside.R | 67 multiverse-0.6.1/multiverse/tests/testthat/test-multiverse.R | 8 multiverse-0.6.1/multiverse/tests/testthat/test-parse_multiverse.R | 12 multiverse-0.6.1/multiverse/tests/testthat/test-print.R |only multiverse-0.6.1/multiverse/tests/testthat/test-utils.R | 49 multiverse-0.6.1/multiverse/vignettes/branch.Rmd | 407 multiverse-0.6.1/multiverse/vignettes/conditions.Rmd | 2 multiverse-0.6.1/multiverse/vignettes/durante-multiverse-analysis.Rmd | 29 multiverse-0.6.1/multiverse/vignettes/execution-multiverse.Rmd |only multiverse-0.6.1/multiverse/vignettes/figures |only multiverse-0.6.1/multiverse/vignettes/frequentist-multiverse-analysis.Rmd | 21 multiverse-0.6.1/multiverse/vignettes/hurricane.Rmd | 171 multiverse-0.6.1/multiverse/vignettes/multiverse-in-rmd.Rmd | 21 multiverse-0.6.1/multiverse/vignettes/visualising-multiverse.Rmd | 7 95 files changed, 6393 insertions(+), 39965 deletions(-)
Title: The Machine Learning and AI Modeling Companion to 'healthyR'
Description: Hospital machine learning and ai data analysis workflow tools, modeling, and automations.
This library provides many useful tools to review common administrative
hospital data. Some of these include predicting length of stay, and readmits.
The aim is to provide a simple and consistent verb framework that takes the
guesswork out of everything.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.ai versions 0.0.7 dated 2022-04-29 and 0.0.8 dated 2022-07-04
DESCRIPTION | 12 LICENSE | 4 MD5 | 278 ++++--- NAMESPACE | 222 +++-- NEWS.md | 31 R/00_global_variables.R | 22 R/augment-hai-fourier-discrete.R | 208 ++--- R/augment-hai-fourier.R | 206 ++--- R/augment-hai-hyperbolic.R | 192 ++--- R/augment-hai-polynomial.R | 232 +++--- R/augment-hai-scale-zero-one.R | 152 ++-- R/augment-hai-scale-zscore.R | 158 ++-- R/augment-hai-windorized-move.R | 164 ++-- R/augment-hai-winsorized-truncate.R | 164 ++-- R/auto-kmeans-predict.R | 156 ++-- R/auto-kmeans.R | 426 +++++------ R/boilerplate-c50.R |only R/boilerplate-cubist.R |only R/boilerplate-earth.R |only R/boilerplate-glmnet.R |only R/boilerplate-knn.R | 467 ++++++------ R/boilerplate-metrics-collection.R |only R/boilerplate-rangers.R |only R/boilerplate-svm_poly.R |only R/boilerplate-svm_rbf.R |only R/boilerplate-xgboost.R |only R/control-chart.R | 314 ++++---- R/data-prep-c50.R |only R/data-prep-cubist.R |only R/data-prep-earth.R |only R/data-prep-glmnet.R |only R/data-prep-knn.R | 94 +- R/data-prep-ranger.R |only R/data-prep-svm_poly.R |only R/data-prep-svm_rbf.R |only R/data-prep-xgboost.R |only R/get-juiced-data.R | 138 +-- R/hai-data-impute-missing.R | 466 ++++++------ R/hai-data-poly.R | 174 ++-- R/hai-data-scale.R | 324 ++++---- R/hai-data-transform.R | 406 +++++----- R/hai-data-trig.R | 230 +++--- R/hai-range-statistic.R | 70 - R/hai-skewed-features.R | 156 ++-- R/kmean-funcs.R | 1022 +++++++++++++-------------- R/metric-sets.R | 132 +-- R/pallette-color-blind.R |only R/pca-data.R | 474 ++++++------ R/plot-hai-density-histogram.R | 226 ++--- R/plot-hai-density-qq.R | 248 +++--- R/plot-hai-density.R | 244 +++--- R/plot-hai-histogram-facet.R | 236 +++--- R/step-hai-fourier-discrete.R | 430 +++++------ R/step-hai-fourier.R | 430 +++++------ R/step-hai-hyperbolic.R | 400 +++++----- R/step-hai-scale-zero-one.R | 358 ++++----- R/step-hai-scale-zscore.R | 364 ++++----- R/step-hai-winsorized-move.R | 392 +++++----- R/step-hai-winsorized-truncate.R | 392 +++++----- R/tbl-hai-distribution-comparison.R | 424 +++++------ R/tbl-hai-get-density-data.R | 184 ++-- R/tbl-hai-get-dist-data.R | 176 ++-- R/utils-pipe.R | 28 R/utils-tidy-eval.R | 96 +- R/vec-hai-fourier-discrete.R | 186 ++-- R/vec-hai-fourier.R | 176 ++-- R/vec-hai-hyperbolic.R | 160 ++-- R/vec-hai-kurtosis.R | 108 +- R/vec-hai-scale-zero-one.R | 120 +-- R/vec-hai-scale-zscore.R | 126 +-- R/vec-hai-skewness.R | 108 +- R/vec-hai-winsorized-move.R | 140 +-- R/vec-hai-winsorized-truncate.R | 130 +-- R/zzz.R | 258 +++--- build/vignette.rds |binary inst/doc/auto-kmeans.Rmd | 258 +++--- inst/doc/auto-kmeans.html | 14 inst/doc/getting-started.Rmd | 386 +++++----- inst/doc/getting-started.html | 207 ++--- man/color_blind.Rd |only man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/get_juiced_data.Rd | 116 +-- man/hai_auto_c50.Rd |only man/hai_auto_cubist.Rd |only man/hai_auto_earth.Rd |only man/hai_auto_glmnet.Rd |only man/hai_auto_knn.Rd | 172 ++-- man/hai_auto_ranger.Rd |only man/hai_auto_svm_poly.Rd |only man/hai_auto_svm_rbf.Rd |only man/hai_auto_wflw_metrics.Rd |only man/hai_auto_xgboost.Rd |only man/hai_c50_data_prepper.Rd |only man/hai_control_chart.Rd | 176 ++-- man/hai_cubist_data_prepper.Rd |only man/hai_data_impute.Rd | 334 ++++---- man/hai_data_poly.Rd | 160 ++-- man/hai_data_scale.Rd | 266 +++---- man/hai_data_transform.Rd | 354 ++++----- man/hai_data_trig.Rd | 188 ++-- man/hai_default_classification_metric_set.Rd | 58 - man/hai_default_regression_metric_set.Rd | 58 - man/hai_density_hist_plot.Rd | 132 +-- man/hai_density_plot.Rd | 144 +-- man/hai_density_qq_plot.Rd | 150 +-- man/hai_distribution_comparison_tbl.Rd | 176 ++-- man/hai_earth_data_prepper.Rd |only man/hai_fourier_augment.Rd | 170 ++-- man/hai_fourier_discrete_augment.Rd | 172 ++-- man/hai_fourier_discrete_vec.Rd | 180 ++-- man/hai_fourier_vec.Rd | 168 ++-- man/hai_get_density_data_tbl.Rd | 94 +- man/hai_get_dist_data_tbl.Rd | 96 +- man/hai_glmnet_data_prepper.Rd |only man/hai_histogram_facet_plot.Rd | 120 +-- man/hai_hyperbolic_augment.Rd | 162 ++-- man/hai_hyperbolic_vec.Rd | 150 +-- man/hai_kmeans_automl.Rd | 184 ++-- man/hai_kmeans_automl_predict.Rd | 122 +-- man/hai_kmeans_mapped_tbl.Rd | 128 +-- man/hai_kmeans_obj.Rd | 116 +-- man/hai_kmeans_scree_data_tbl.Rd | 124 +-- man/hai_kmeans_scree_plt.Rd | 120 +-- man/hai_kmeans_tidy_tbl.Rd | 164 ++-- man/hai_kmeans_user_item_tbl.Rd | 132 +-- man/hai_knn_data_prepper.Rd | 111 +- man/hai_kurtosis_vec.Rd | 90 +- man/hai_polynomial_augment.Rd | 158 ++-- man/hai_range_statistic.Rd | 58 - man/hai_ranger_data_prepper.Rd |only man/hai_scale_color_colorblind.Rd |only man/hai_scale_fill_colorblind.Rd |only man/hai_scale_zero_one_augment.Rd | 122 +-- man/hai_scale_zero_one_vec.Rd | 128 +-- man/hai_scale_zscore_augment.Rd | 128 +-- man/hai_scale_zscore_vec.Rd | 128 +-- man/hai_skewed_features.Rd | 80 +- man/hai_skewness_vec.Rd | 90 +- man/hai_svm_poly_data_prepper.Rd |only man/hai_svm_rbf_data_prepper.Rd |only man/hai_winsorized_move_augment.Rd | 124 +-- man/hai_winsorized_move_vec.Rd | 130 +-- man/hai_winsorized_truncate_augment.Rd | 124 +-- man/hai_winsorized_truncate_vec.Rd | 130 +-- man/hai_xgboost_data_prepper.Rd |only man/pca_your_recipe.Rd | 204 ++--- man/pipe.Rd | 40 - man/required_pkgs.healthyR.ai.Rd | 126 +-- man/step_hai_fourier.Rd | 234 +++--- man/step_hai_fourier_discrete.Rd | 234 +++--- man/step_hai_hyperbolic.Rd | 220 ++--- man/step_hai_scale_zero_one.Rd | 196 ++--- man/step_hai_scale_zscore.Rd | 214 ++--- man/step_hai_winsorized_move.Rd | 218 ++--- man/step_hai_winsorized_truncate.Rd | 218 ++--- man/tidyeval.Rd | 108 +- vignettes/auto-kmeans.Rmd | 258 +++--- vignettes/getting-started.Rmd | 386 +++++----- 159 files changed, 11705 insertions(+), 11537 deletions(-)
Title: Functional Data Analysis
Description: These functions were developed to support functional data
analysis as described in Ramsay, J. O. and Silverman, B. W.
(2005) Functional Data Analysis. New York: Springer and in
Ramsay, J. O., Hooker, Giles, and Graves, Spencer (2009).
Functional Data Analysis with R and Matlab (Springer).
The package includes data sets and script files working many examples
including all but one of the 76 figures in this latter book. Matlab versions
are available by ftp from
<https://www.psych.mcgill.ca/misc/fda/downloads/FDAfuns/>.
Author: J. O. Ramsay <ramsay@psych.mcgill.ca> [aut,cre],
Spencer Graves <spencer.graves@effectivedefense.org> [ctb],
Giles Hooker <gjh27@cornell.edu> [ctb]
Maintainer: J. O. Ramsay <ramsay@psych.mcgill.ca>
Diff between fda versions 6.0.4 dated 2022-06-25 and 6.0.5 dated 2022-07-04
DESCRIPTION | 8 +-- MD5 | 6 +- inst/NEWS.Rd | 121 +++++++++++++++++++++------------------------- inst/doc/BasisBasics.html | 4 - 4 files changed, 65 insertions(+), 74 deletions(-)
Title: Get and Show Personal 'Google Scholar' Profile
Description: Provides functions to get personal 'Google Scholar'
profile data from web API and show it in table or figure format.
Author: Shixiang Wang [aut, cre]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between tinyscholar versions 0.1.5 dated 2022-06-01 and 0.1.6 dated 2022-07-04
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 4 R/scholar_search.R | 5 build/vignette.rds |binary inst/doc/tinyscholar.html | 355 +++++++++++++++++++++------------------------- 6 files changed, 182 insertions(+), 198 deletions(-)
Title: Create Custom Taxonomies Based on the NCBI Taxonomy and GBIF
Backbone Taxonomy
Description: The NCBI taxonomy is a popular resource for taxonomic studies but it only contains
data on species with sequence data whereas the GBIF has a more extensive coverage of
extinct species. Taxonbridge is useful for the creation and analysis of custom taxonomies
based on the NCBI taxonomy and GBIF backbone taxonomy.
Author: Werner Veldsman [aut, cre] ,
Giulia Campli [aut],
Sagane Dind [aut],
Valentine Rech de Laval [aut] ,
Harriet Drage [aut] ,
Robert Waterhouse [aut] ,
Marc Robinson-Rechavi [aut]
Maintainer: Werner Veldsman <wernerpieter.veldsman@unil.ch>
Diff between taxonbridge versions 1.2.1 dated 2022-05-02 and 1.2.2 dated 2022-07-04
DESCRIPTION | 27 ++++++++++++++++++++++----- MD5 | 13 +++++++------ NEWS.md | 5 +++++ R/load_methods.R | 33 ++++++++++++++++++++------------- README.md | 8 +++++++- inst/CITATION |only man/download_ncbi.Rd | 6 +++--- man/load_taxonomies.Rd | 2 +- 8 files changed, 65 insertions(+), 29 deletions(-)
Title: Design Shaded Contour Lines (or Tanaka) Maps
Description: The Tanaka method enhances the representation of topography on
a map using shaded contour lines. In this simplified implementation of
the method, north-west white contours represent illuminated topography
and south-east black contours represent shaded topography. See Tanaka
(1950) <doi:10.2307/211219>.
Author: Timothee Giraud [cre, aut]
Maintainer: Timothee Giraud <timothee.giraud@cnrs.fr>
Diff between tanaka versions 0.2.0 dated 2022-01-07 and 0.3.0 dated 2022-07-04
DESCRIPTION | 10 +++---- MD5 | 17 ++++++------ NAMESPACE | 10 +------ NEWS.md | 8 +++++ R/tanaka.R | 5 ++- R/tanaka_contour.R | 69 ++------------------------------------------------ README.md | 10 ++++--- man/figures |only man/tanaka.Rd | 23 ++++++++++------ man/tanaka_contour.Rd | 8 +++-- 10 files changed, 54 insertions(+), 106 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.3.2 dated 2022-06-23 and 1.3.3 dated 2022-07-04
DESCRIPTION | 6 +++--- MD5 | 42 +++++++++++++++++++++--------------------- NEWS.md | 6 ++++++ R/ichimoku-package.R | 2 +- R/iplot.R | 8 ++++---- R/sysdata.rda |binary README.md | 2 +- build/vignette.rds |binary inst/doc/reference.Rmd | 4 ++-- inst/doc/reference.html | 6 +++--- inst/doc/strategies.Rmd | 2 +- inst/doc/strategies.html | 2 +- inst/doc/utilities.Rmd | 2 +- inst/doc/utilities.html | 2 +- inst/doc/xoanda.Rmd | 2 +- inst/doc/xoanda.html | 2 +- man/ichimoku-package.Rd | 2 +- man/iplot.Rd | 6 +++--- vignettes/reference.Rmd | 4 ++-- vignettes/strategies.Rmd | 2 +- vignettes/utilities.Rmd | 2 +- vignettes/xoanda.Rmd | 2 +- 22 files changed, 56 insertions(+), 50 deletions(-)
Title: Fast Estimators for Design-Based Inference
Description: Fast procedures for small set of commonly-used, design-appropriate estimators with robust standard errors and confidence intervals. Includes estimators for linear regression, instrumental variables regression, difference-in-means, Horvitz-Thompson estimation, and regression improving precision of experimental estimates by interacting treatment with centered pre-treatment covariates introduced by Lin (2013) <doi:10.1214/12-AOAS583>.
Author: Graeme Blair [aut, cre],
Jasper Cooper [aut],
Alexander Coppock [aut],
Macartan Humphreys [aut],
Luke Sonnet [aut],
Neal Fultz [ctb],
Lily Medina [ctb],
Russell Lenth [ctb]
Maintainer: Graeme Blair <graeme.blair@gmail.com>
Diff between estimatr versions 0.30.6 dated 2022-01-31 and 1.0.0 dated 2022-07-04
DESCRIPTION | 14 +++++++------- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ R/estimatr_lm_lin.R | 2 +- R/estimatr_lm_robust.R | 2 +- build/partial.rdb |binary man/lm_robust.Rd | 2 +- tests/testthat/test-condition-pr-matrix.R | 2 ++ tests/testthat/test-iv-robust.R | 6 ++++++ tests/testthat/test-lh-robust.R | 10 ++++++++++ tests/testthat/test-s3-methods.R | 4 ++++ tests/testthat/test-stata-output.R | 2 ++ 12 files changed, 50 insertions(+), 21 deletions(-)
Title: Africa Macroeconomic Monitor Database API
Description: An R API providing access to a relational database with macroeconomic data for Africa.
The database contains >700 macroeconomic time series from mostly international sources,
grouped into 50 macroeconomic and development-related topics. Series are carefully selected
on the basis of data coverage for Africa, frequency, and relevance to the macro-development context.
The project is part of the 'Kiel Institute Africa Initiative'
<https://www.ifw-kiel.de/institute/initiatives/kielinstituteafricainitiative/>,
which, amongst other things, aims to develop a parsimonious database with highly relevant indicators
to monitor macroeconomic developments in Africa, accessible through a fast API and a web-based platform
at <https://africamonitor.ifw-kiel.de/>.
The database is maintained at the Kiel Institute for the World Economy <https://www.ifw-kiel.de/>.
Author: Sebastian Krantz [aut, cre]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between africamonitor versions 0.1.2 dated 2022-05-25 and 0.2.0 dated 2022-07-04
DESCRIPTION | 19 +++++++++++++------ MD5 | 6 +++--- NEWS.md | 9 ++++++--- R/accessdb.R | 4 ++-- 4 files changed, 24 insertions(+), 14 deletions(-)
Title: Smoothing Methods for Nonparametric Regression and Density
Estimation
Description: This is software linked to the book
'Applied Smoothing Techniques for Data Analysis -
The Kernel Approach with S-Plus Illustrations' Oxford University Press.
Author: Adrian Bowman and Adelchi Azzalini.
Ported to R by B. D. Ripley <ripley@stats.ox.ac.uk> up to version 2.0,
version 2.1 by Adrian Bowman and Adelchi Azzalini,
version 2.2 by Adrian Bowman.
Maintainer: Adrian Bowman <adrian.bowman@glasgow.ac.uk>
Diff between sm versions 2.2-5.7 dated 2021-09-13 and 2.2-5.7.1 dated 2022-07-04
sm-2.2-5.7.1/sm/DESCRIPTION | 8 - sm-2.2-5.7.1/sm/MD5 | 16 +- sm-2.2-5.7.1/sm/R/sm.r | 106 +++++++++--------- sm-2.2-5.7.1/sm/R/variogram.r | 180 +++++++++++++++---------------- sm-2.2-5.7.1/sm/data/geyser.tab.gz |only sm-2.2-5.7.1/sm/man/sm.ancova.Rd | 4 sm-2.2-5.7.1/sm/man/sm.discontinuity.Rd | 2 sm-2.2-5.7.1/sm/man/sm.sigma.Rd | 4 sm-2.2-5.7.1/sm/man/sm.sigma2.compare.Rd | 4 sm-2.2-5.7/sm/data/geyser.tab |only 10 files changed, 162 insertions(+), 162 deletions(-)
Title: Simple Interactive Controls for R using the 'tcltk' Package
Description: A set of functions to build simple
GUI controls for R functions. These are built on the 'tcltk' package.
Uses could include changing a parameter on a graph by animating it
with a slider or a "doublebutton", up to more sophisticated control
panels.
Some functions for specific graphical tasks, referred to as 'cartoons',
are provided.
Author: Bowman, Bowman, Gibson and Crawford
Maintainer: Adrian Bowman <adrian.bowman@glasgow.ac.uk>
Diff between rpanel versions 1.1-5 dated 2021-09-03 and 1.1-5.1 dated 2022-07-04
DESCRIPTION | 8 +-- MD5 | 14 ++--- R/rp-firth.r | 128 ++++++++++++++++++++++++++--------------------------- R/rp-mururoa.r | 126 ++++++++++++++++++++++++++-------------------------- R/rp-plot4d.r | 68 ++++++++++++++-------------- R/rp-regression3.r | 2 R/rp-surface.r | 48 +++++++++---------- man/rp.surface.Rd | 2 8 files changed, 198 insertions(+), 198 deletions(-)
Title: Helpers for Parameters in Black-Box Optimization, Tuning and
Machine Learning
Description: Functions for parameter descriptions and operations
in black-box optimization, tuning and machine learning. Parameters can
be described (type, constraints, defaults, etc.), combined to
parameter sets and can in general be programmed on. A useful OptPath
object (archive) to log function evaluations is also provided.
Author: Bernd Bischl [aut] ,
Michel Lang [aut] ,
Jakob Richter [cre, aut] ,
Jakob Bossek [aut],
Daniel Horn [aut],
Karin Schork [ctb],
Pascal Kerschke [aut]
Maintainer: Jakob Richter <code@jakob-r.de>
Diff between ParamHelpers versions 1.14 dated 2020-03-24 and 1.14.1 dated 2022-07-04
DESCRIPTION | 9 ++++----- MD5 | 6 +++--- R/renderOptPathPlot_helpers.R | 4 ++-- R/renderOptPathPlot_workers.R | 4 ++-- 4 files changed, 11 insertions(+), 12 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction
from noisy and high-dimensional data. It facilitates identification of patterns representing underlying
groups on all samples in a data set. Based on Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA.
(2017) Bioinformatics <doi:10.1093/bioinformatics/btw705> and Cacciatore S, Luchinat C, Tenori L. (2014)
Proc Natl Acad Sci USA <doi:10.1073/pnas.1220873111>.
Author: Stefano Cacciatore [aut, trl, cre]
,
Leonardo Tenori [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between KODAMA versions 1.9 dated 2022-04-01 and 2.0 dated 2022-07-04
DESCRIPTION | 10 MD5 | 58 - NAMESPACE | 63 - R/KOD.R | 2292 ++++++++++++++++++++++------------------------ R/RcppExports.R | 414 ++++---- build/vignette.rds |binary inst/doc/KODAMA.R | 28 inst/doc/KODAMA.Rmd | 1040 ++++++++++---------- inst/doc/KODAMA.pdf |binary man/KODAMA-internal.Rd | 38 man/KODAMA.Rd | 233 ++-- man/MetRef.Rd | 114 +- man/USA.Rd | 100 +- man/categorical.test.Rd | 114 +- man/continuous.test.Rd | 138 +- man/frequency_matching.Rd | 160 +-- man/k.test.Rd | 90 - man/lymphoma.Rd | 112 +- man/normalization.Rd | 140 +- man/pca.Rd | 98 - src/RcppExports.cpp | 29 src/prova.cpp | 236 ---- vignettes/KODAMA.Rmd | 1040 ++++++++++---------- vignettes/iris.pdf |binary vignettes/iris_knn_5.pdf |binary vignettes/kk1.pdf |binary vignettes/kk2.pdf |binary vignettes/kk4.pdf |binary vignettes/kk5.pdf |binary vignettes/mcplot.pdf |binary 30 files changed, 3129 insertions(+), 3418 deletions(-)
Title: Generalized Additive Models
Description: Functions for fitting and working with generalized
additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie
Maintainer: Trevor Hastie <hastie@stanford.edu>
Diff between gam versions 1.20.1 dated 2022-03-14 and 1.20.2 dated 2022-07-04
DESCRIPTION | 8 ++--- MD5 | 32 ++++++++++---------- R/gplot.matrix.R | 11 ++----- man/anova.gam.Rd | 2 - man/gam.Rd | 2 - man/gam.control.Rd | 2 - man/gam.scope.Rd | 2 - man/gam.smoothers.Rd | 2 - man/lo.Rd | 2 - man/na.gam.replace.Rd | 2 - man/plot.gam.Rd | 2 - man/predict.gam.Rd | 2 - man/random.Rd | 2 - man/s.Rd | 2 - man/step.gam.Rd | 2 - src/loessc.c | 78 +++++++++++++++++++++++++------------------------- src/modreg.h | 53 ++++++++++++++++----------------- 17 files changed, 100 insertions(+), 106 deletions(-)
Title: Point Forecast Reconciliation
Description: Classical (bottom-up and top-down), optimal and heuristic combination forecast
reconciliation procedures for cross-sectional, temporal, and cross-temporal linearly
constrained time series (Di Fonzo and Girolimetto, 2021) <doi:10.1016/j.ijforecast.2021.08.004>.
Author: Daniele Girolimetto [aut, cre, fnd],
Tommaso Di Fonzo [aut, fnd]
Maintainer: Daniele Girolimetto <daniele.girolimetto@phd.unipd.it>
Diff between FoReco versions 0.2.4 dated 2022-06-16 and 0.2.5 dated 2022-07-04
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 6 ++++++ R/FoReco-package.R | 4 ++-- R/lccrec.R | 8 ++++---- R/reco.R | 12 ++++-------- README.md | 5 +++-- build/FoReco.pdf |binary inst/doc/FoReco_package.html | 4 ++-- inst/doc/accuracy_indices.html | 4 ++-- man/FoReco-package.Rd | 4 ++-- man/lccrec.Rd | 8 ++++---- 12 files changed, 43 insertions(+), 40 deletions(-)
Title: Functions for Extreme Value Distributions
Description: Extends simulation, distribution, quantile and density
functions to univariate and multivariate parametric extreme
value distributions, and provides fitting functions which
calculate maximum likelihood estimates for univariate and
bivariate maxima models, and for univariate and bivariate
threshold models.
Author: Alec Stephenson. Function fbvpot by Chris Ferro.
Maintainer: Alec Stephenson <alec_stephenson@hotmail.com>
Diff between evd versions 2.3-6 dated 2022-04-12 and 2.3-6.1 dated 2022-07-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/profile.R | 40 ++++++++++++++++++++-------------------- man/plot.profile2d.evd.Rd | 2 +- 4 files changed, 28 insertions(+), 28 deletions(-)
Title: Graphical User Interface for Data Quality Assessment
Description: A graphical user interface (GUI) to the functions implemented in the R package 'DQAstats'.
Author: Lorenz A. Kapsner [cre, aut] ,
Jonathan M. Mang [aut] ,
MIRACUM - Medical Informatics in Research and Care in University
Medicine [fnd],
Universitaetsklinikum Erlangen [cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@uk-erlangen.de>
Diff between DQAgui versions 0.2.0 dated 2022-05-20 and 0.2.1 dated 2022-07-04
DQAgui-0.2.0/DQAgui/README.md |only DQAgui-0.2.1/DQAgui/DESCRIPTION | 12 DQAgui-0.2.1/DQAgui/MD5 | 37 DQAgui-0.2.1/DQAgui/R/app_utils.R | 1587 ++++---- DQAgui-0.2.1/DQAgui/R/launch_app.R | 195 - DQAgui-0.2.1/DQAgui/R/moduleAtempPlausibility.R | 6 DQAgui-0.2.1/DQAgui/R/moduleConfig.R | 3488 +++++++++--------- DQAgui-0.2.1/DQAgui/R/moduleDashboard.R | 1344 +++--- DQAgui-0.2.1/DQAgui/R/moduleDescriptive.R | 916 ++-- DQAgui-0.2.1/DQAgui/R/moduleLog.R | 480 +- DQAgui-0.2.1/DQAgui/R/moduleReport.R | 2 DQAgui-0.2.1/DQAgui/R/moduleUniquePlausibility.R | 4 DQAgui-0.2.1/DQAgui/inst/application/global.R | 89 DQAgui-0.2.1/DQAgui/inst/application/server.R | 753 +-- DQAgui-0.2.1/DQAgui/inst/application/ui.R | 20 DQAgui-0.2.1/DQAgui/man/get_db_settings.Rd | 6 DQAgui-0.2.1/DQAgui/man/launch_app.Rd | 10 DQAgui-0.2.1/DQAgui/tests/testthat/_snaps/shinyapp.md | 2768 ++++++-------- DQAgui-0.2.1/DQAgui/tests/testthat/test-lints.R | 66 DQAgui-0.2.1/DQAgui/tests/testthat/test-shinyapp.R | 73 20 files changed, 6032 insertions(+), 5824 deletions(-)
Title: Package for Community Ecology and Suitability Analysis
Description: Graphical User Interface (via the R-Commander) and utility functions (often based on the vegan package) for statistical analysis of biodiversity and ecological communities, including species accumulation curves, diversity indices, Renyi profiles, GLMs for analysis of species abundance and presence-absence, distance matrices, Mantel tests, and cluster, constrained and unconstrained ordination analysis. A book on biodiversity and community ecology analysis is available for free download from the website. In 2012, methods for (ensemble) suitability modelling and mapping were expanded in the package.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <R.KINDT@CGIAR.ORG>
Diff between BiodiversityR versions 2.14-2 dated 2022-04-29 and 2.14-2.1 dated 2022-07-04
BiodiversityR-2.14-2.1/BiodiversityR/DESCRIPTION | 8 +-- BiodiversityR-2.14-2.1/BiodiversityR/MD5 | 26 +++++----- BiodiversityR-2.14-2.1/BiodiversityR/R/ensemble.evaluate.R | 11 ++-- BiodiversityR-2.14-2.1/BiodiversityR/R/residualssurface.R | 4 - BiodiversityR-2.14-2.1/BiodiversityR/build/partial.rdb |binary BiodiversityR-2.14-2.1/BiodiversityR/data/BCI.env.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/CucurbitaClim.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/faramea.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/ifri.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/transfgradient.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/transfspecies.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/warcom.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/data/warenv.txt.gz |only BiodiversityR-2.14-2.1/BiodiversityR/man/residualssurface.Rd | 4 - BiodiversityR-2.14-2/BiodiversityR/data/BCI.env.txt |only BiodiversityR-2.14-2/BiodiversityR/data/CucurbitaClim.txt |only BiodiversityR-2.14-2/BiodiversityR/data/faramea.txt |only BiodiversityR-2.14-2/BiodiversityR/data/ifri.txt |only BiodiversityR-2.14-2/BiodiversityR/data/transfgradient.txt |only BiodiversityR-2.14-2/BiodiversityR/data/transfspecies.txt |only BiodiversityR-2.14-2/BiodiversityR/data/warcom.txt |only BiodiversityR-2.14-2/BiodiversityR/data/warenv.txt |only 22 files changed, 27 insertions(+), 26 deletions(-)
Title: R Utilities Accompanying the Software Package BayesX
Description: Functions for exploring and visualising estimation results
obtained with BayesX, a free software for estimating structured additive
regression models (<http://www.BayesX.org>). In addition,
functions that allow to read, write and manipulate map objects that are required in spatial
analyses performed with BayesX.
Author: Nikolaus Umlauf [aut, cre],
Thomas Kneib [aut],
Nadja Klein [aut],
Felix Heinzl [ctb],
Andreas Brezger [ctb],
Daniel Sabanes Bove [ctb]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between BayesX versions 0.3-1 dated 2019-08-24 and 0.3-1.1 dated 2022-07-04
BayesX-0.3-1.1/BayesX/DESCRIPTION | 8 +++--- BayesX-0.3-1.1/BayesX/MD5 | 9 +++--- BayesX-0.3-1.1/BayesX/NAMESPACE | 4 --- BayesX-0.3-1.1/BayesX/R/plotsurf.R | 44 +++++++++++----------------------- BayesX-0.3-1.1/BayesX/man/plotsurf.Rd | 11 -------- BayesX-0.3-1/BayesX/R/AAA.R |only 6 files changed, 24 insertions(+), 52 deletions(-)
Title: Seawater Carbonate Chemistry
Description: Calculates parameters of the seawater carbonate system and assists the design of ocean acidification perturbation experiments.
Author: Jean-Pierre Gattuso [aut, cre, cph],
Jean-Marie Epitalon [aut],
Heloise Lavigne [aut],
James Orr [aut],
Bernard Gentili [ctb],
Mathilde Hagens [ctb],
Andreas Hofmann [ctb],
Jens-Daniel Mueller [ctb],
Aurelien Proye [ctb],
James Rae [ctb],
Karline Soe [...truncated...]
Maintainer: Jean-Pierre Gattuso <jean-pierre.gattuso@imev-mer.fr>
Diff between seacarb versions 3.3.0 dated 2021-10-18 and 3.3.1 dated 2022-07-04
ChangeLog | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 6 +++--- man/derivnum.Rd | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Bayesian Optimization and Model-Based Optimization of Expensive
Black-Box Functions
Description: Flexible and comprehensive R toolbox for model-based optimization
('MBO'), also known as Bayesian optimization. It implements the Efficient
Global Optimization Algorithm and is designed for both single- and multi-
objective optimization with mixed continuous, categorical and conditional
parameters. The machine learning toolbox 'mlr' provide dozens of regression
learners to model the performance of the target algorithm with respect to
the parameter settings. It provides many different infill criteria to guide
the search process. Additional features include multi-point batch proposal,
parallel execution as well as visualization and sophisticated logging
mechanisms, which is especially useful for teaching and understanding of
algorithm behavior. 'mlrMBO' is implemented in a modular fashion, such that
single components can be easily replaced or adapted by the user for specific
use cases.
Author: Bernd Bischl [aut] ,
Jakob Richter [aut, cre] ,
Jakob Bossek [aut] ,
Daniel Horn [aut],
Michel Lang [aut] ,
Janek Thomas [aut]
Maintainer: Jakob Richter <code@jakob-r.de>
Diff between mlrMBO versions 1.1.5 dated 2020-10-23 and 1.1.5.1 dated 2022-07-04
DESCRIPTION | 11 MD5 | 10 R/doc_mbo_OptPath.R | 8 build/vignette.rds |binary inst/doc/mlrMBO.html | 758 ++++++++++++++++++++++++++++++++------------------- man/mbo_OptPath.Rd | 8 6 files changed, 505 insertions(+), 290 deletions(-)
Title: ICESat-2 Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry API' <https://openaltimetry.org/data/swagger-ui/> to download and process 'ATL03' (Global Geolocated Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice Freeboard), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects altimetry data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice freeboard, and vegetation canopy height begun by 'ICESat' in 2003.
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.1 dated 2022-03-05 and 1.0.2 dated 2022-07-04
IceSat2R-1.0.1/IceSat2R/inst/data_files/RGT_cycle_14.RDS |only IceSat2R-1.0.1/IceSat2R/inst/data_files/ne_10m_glaciated_areas.RDS |only IceSat2R-1.0.2/IceSat2R/DESCRIPTION | 8 IceSat2R-1.0.2/IceSat2R/MD5 | 105 ++- IceSat2R-1.0.2/IceSat2R/NAMESPACE | 1 IceSat2R-1.0.2/IceSat2R/NEWS.md | 15 IceSat2R-1.0.2/IceSat2R/R/API_utils.R | 145 +++++ IceSat2R-1.0.2/IceSat2R/R/IceSat2R.R | 25 IceSat2R-1.0.2/IceSat2R/R/data.R |only IceSat2R-1.0.2/IceSat2R/R/get_Atlas_data.R | 56 - IceSat2R-1.0.2/IceSat2R/R/get_Tracks_data.R | 18 IceSat2R-1.0.2/IceSat2R/R/global_grid.R | 2 IceSat2R-1.0.2/IceSat2R/R/mission_orbits.R | 287 +++++++--- IceSat2R-1.0.2/IceSat2R/R/shiny_app.R | 11 IceSat2R-1.0.2/IceSat2R/README.md | 147 ++++- IceSat2R-1.0.2/IceSat2R/build/vignette.rds |binary IceSat2R-1.0.2/IceSat2R/data |only IceSat2R-1.0.2/IceSat2R/inst/data_files/technical_specs_urls.csv | 2 IceSat2R-1.0.2/IceSat2R/inst/data_files/vignette_data/3d_plot.RDS |binary IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Atlas_products_PDF.R | 217 +++---- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Atlas_products_PDF.Rmd | 226 +++---- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Mission_Orbits_PDF.R | 71 -- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Mission_Orbits_PDF.Rmd | 106 --- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.R | 82 -- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.Rmd | 88 +-- IceSat2R-1.0.2/IceSat2R/inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary IceSat2R-1.0.2/IceSat2R/man/IceSat2R.Rd |only IceSat2R-1.0.2/IceSat2R/man/RGT_cycle_14.Rd |only IceSat2R-1.0.2/IceSat2R/man/available_RGTs.Rd | 4 IceSat2R-1.0.2/IceSat2R/man/available_nominal_orbits.Rd | 2 IceSat2R-1.0.2/IceSat2R/man/degrees_to_global_grid.Rd | 2 IceSat2R-1.0.2/IceSat2R/man/getTracks.Rd | 17 IceSat2R-1.0.2/IceSat2R/man/get_atlas_data.Rd | 54 - IceSat2R-1.0.2/IceSat2R/man/get_level3a_data.Rd | 2 IceSat2R-1.0.2/IceSat2R/man/latest_orbits.Rd | 4 IceSat2R-1.0.2/IceSat2R/man/ne_10m_glaciated_areas.Rd |only IceSat2R-1.0.2/IceSat2R/man/overall_mission_orbits.Rd | 11 IceSat2R-1.0.2/IceSat2R/man/revisit_time_RGTs.Rd | 7 IceSat2R-1.0.2/IceSat2R/man/select_aoi_global_grid.Rd | 11 IceSat2R-1.0.2/IceSat2R/man/switch_abb.Rd |only IceSat2R-1.0.2/IceSat2R/man/switch_full.Rd |only IceSat2R-1.0.2/IceSat2R/man/time_specific_orbits.Rd | 11 IceSat2R-1.0.2/IceSat2R/man/verify_RGTs.Rd |only IceSat2R-1.0.2/IceSat2R/man/vsi_kml_from_zip.Rd | 2 IceSat2R-1.0.2/IceSat2R/man/vsi_nominal_orbits_wkt.Rd | 6 IceSat2R-1.0.2/IceSat2R/man/vsi_time_specific_orbits_wkt.Rd | 4 IceSat2R-1.0.2/IceSat2R/tests/testthat/setup.R |only IceSat2R-1.0.2/IceSat2R/tests/testthat/test-API_utils.R |only IceSat2R-1.0.2/IceSat2R/tests/testthat/test-get_Atlas_data.R | 41 + IceSat2R-1.0.2/IceSat2R/tests/testthat/test-get_Tracks_data.R | 20 IceSat2R-1.0.2/IceSat2R/tests/testthat/test-global_grid.R |only IceSat2R-1.0.2/IceSat2R/tests/testthat/test-mission_orbits.R | 186 ++++++ IceSat2R-1.0.2/IceSat2R/tests/testthat/test-shiny_app.R | 6 IceSat2R-1.0.2/IceSat2R/vignettes/3d_plotly.png |binary IceSat2R-1.0.2/IceSat2R/vignettes/IceSat-2_Atlas_products_PDF.Rmd | 226 +++---- IceSat2R-1.0.2/IceSat2R/vignettes/IceSat-2_Mission_Orbits_PDF.Rmd | 106 --- IceSat2R-1.0.2/IceSat2R/vignettes/IceSat-2_Virtual_File_System_Orbits_PDF.Rmd | 88 +-- 59 files changed, 1365 insertions(+), 1057 deletions(-)
Title: Construction and Evaluation of Metamodels
Description: Estimation, validation and prediction of models of different types : linear models, additive models, MARS,PolyMARS and Kriging.
Author: D. Dupuy and C. Helbert
Maintainer: C. Helbert <Celine.Helbert@ec-lyon.fr>
Diff between DiceEval versions 1.5 dated 2020-05-05 and 1.5.1 dated 2022-07-04
DESCRIPTION | 9 +++----- MD5 | 10 ++++----- R/modelComparison.R | 52 ++++++++++++++++++++++++------------------------ inst/CITATION | 2 - man/DiceEval-package.Rd | 2 - man/formulaLm.rd | 2 - 6 files changed, 38 insertions(+), 39 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-11 0.7.0
2021-10-26 0.6.0
2021-07-02 0.5.0
2021-04-16 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-10 1.7
2020-12-09 1.6-7
2020-06-29 1.6-5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-11 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-02 0.1.0
Title: Helper Tools for Australian Hydrologists
Description: Functions to speed up work flow for hydrological analysis.
Focused on Australian climate data (SILO climate data), hydrological models (eWater Source) and in particular South Australia (<https://water.data.sa.gov.au> hydrological data).
Author: Matt Gibbs [aut, cre]
Maintainer: Matt Gibbs <gibbs.ms@gmail.com>
Diff between SWTools versions 0.2.3.1 dated 2022-03-30 and 0.2.4 dated 2022-07-04
DESCRIPTION | 6 +++--- MD5 | 20 +++++++++++--------- NAMESPACE | 1 + NEWS.md | 6 ++++++ R/SILO.R | 2 +- R/SILOFindSitesByShapefile.R | 14 +++++++++++++- R/SILOMorton.R | 2 +- R/SILOThiessenShp.R | 11 +++++++---- R/SILOWriteFunctionsforSource.R |only man/SILOSitesfromPolygon.Rd | 8 +++++++- man/SILOThiessenShp.Rd | 2 +- man/SILOWriteFunctionsforSource.Rd |only 12 files changed, 51 insertions(+), 21 deletions(-)
Title: Mesh Generation and Surface Tessellation
Description: Makes the 'Qhull' library <http://www.qhull.org>
available in R, in a similar manner as in Octave and MATLAB. Qhull
computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site
Delaunay triangulations, and furthest-site Voronoi diagrams. It
runs in 2D, 3D, 4D, and higher dimensions. It implements the
Quickhull algorithm for computing the convex hull. Qhull does not
support constrained Delaunay triangulations, or mesh generation of
non-convex objects, but the package does include some R functions
that allow for this.
Author: Jean-Romain Roussel [cph, ctb] ,
C. B. Barber [cph],
Kai Habel [cph, aut],
Raoul Grasman [cph, aut],
Robert B. Gramacy [cph, aut],
Pavlo Mozharovskyi [cph, aut],
David C. Sterratt [cph, aut, cre]
Maintainer: David C. Sterratt <david.c.sterratt@ed.ac.uk>
Diff between geometry versions 0.4.6 dated 2022-04-18 and 0.4.6.1 dated 2022-07-04
DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- R/convhulln.R | 32 ++++++++++++++++---------------- R/delaunayn.R | 26 +++++++++++++------------- R/distmesh2d.R | 30 +++++++++++++++--------------- R/distmeshnd.R | 22 +++++++++++----------- R/surf.tri.R | 14 +++++++------- build/vignette.rds |binary inst/doc/qhull-eg.pdf |binary man/convhulln.Rd | 4 ++-- man/delaunayn.Rd | 4 ++-- man/distmesh2d.Rd | 2 +- man/distmeshnd.Rd | 2 +- man/surf.tri.Rd | 2 +- 14 files changed, 86 insertions(+), 86 deletions(-)