Title: Create a Collection of 'tidymodels' Workflows
Description: A workflow is a combination of a model and preprocessors
(e.g, a formula, recipe, etc.) (Kuhn and Silge (2021)
<https://www.tmwr.org/>). In order to try different combinations of
these, an object can be created that contains many workflows. There
are functions to create workflows en masse as well as training them
and visualizing the results.
Author: Max Kuhn [aut] ,
Simon Couch [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between workflowsets versions 0.2.1 dated 2022-03-15 and 1.0.0 dated 2022-07-12
DESCRIPTION | 34 +++--- MD5 | 43 ++++---- NAMESPACE | 14 +- NEWS.md | 8 + R/0_imports.R | 14 ++ R/extract.R | 17 +++ R/options.R | 2 R/pull.R | 2 R/update.R | 4 R/workflow_set.R | 110 ++++++++++++++++++++- R/zzz.R | 8 - build/vignette.rds |binary inst/doc/evaluating-different-predictor-sets.html | 3 man/extract_workflow_set_result.Rd | 8 + man/reexports.Rd | 4 man/update_workflow_model.Rd | 4 man/workflow_set.Rd | 20 +++ man/workflowsets-package.Rd | 9 + tests/testthat/_snaps/workflow_set.md | 110 +++++++++++++++++++++ tests/testthat/helper-extract_parameter_set.R |only tests/testthat/test-extract.R | 92 +++++++++++++++++ tests/testthat/test-options.R | 2 tests/testthat/test-workflow_set.R | 114 ++++++++++++++++++++++ 23 files changed, 556 insertions(+), 66 deletions(-)
Title: An Interface to IBGE's SIDRA API
Description: Allows the user to connect with IBGE's (Instituto Brasileiro de
Geografia e Estatistica, see <https://www.ibge.gov.br/> for more information)
SIDRA API in a flexible way. SIDRA is the acronym to "Sistema IBGE de
Recuperacao Automatica" and is the system where IBGE turns available
aggregate data from their researches.
Author: Renato Prado Siqueira [aut, cre]
Maintainer: Renato Prado Siqueira <rpradosiqueira@gmail.com>
Diff between sidrar versions 0.2.8 dated 2022-06-03 and 0.2.9 dated 2022-07-12
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/get_sidra.R | 25 ++++++++++--------------- inst/doc/Introduction_to_sidrar.html | 4 ++-- 5 files changed, 24 insertions(+), 25 deletions(-)
Title: Mapping Fisheries Data and Spatial Analysis Tools
Description: This software has evolved from fisheries research conducted at the
Pacific Biological Station (PBS) in 'Nanaimo', British Columbia, Canada. It
extends the R language to include two-dimensional plotting features similar
to those commonly available in a Geographic Information System (GIS).
Embedded C code speeds algorithms from computational geometry, such as
finding polygons that contain specified point events or converting between
longitude-latitude and Universal Transverse Mercator (UTM) coordinates.
Additionally, we include 'C++' code developed by Angus Johnson for the
'Clipper' library, data for a global shoreline, and other data sets in the
public domain. Under the user's R library directory '.libPaths()',
specifically in './PBSmapping/doc', a complete user's guide is offered and
should be consulted to use package functions effectively.
Author: Jon T. Schnute [aut],
Nicholas Boers [aut],
Rowan Haigh [aut, cre],
Alex Couture-Beil [ctb],
Denis Chabot [ctb],
Chris Grandin [ctb],
Angus Johnson [ctb],
Paul Wessel [ctb],
Franklin Antonio [ctb],
Nicholas J. Lewin-Koh [ctb],
Roger Bivand [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSmapping versions 2.73.0 dated 2021-01-13 and 2.73.1 dated 2022-07-12
DESCRIPTION | 10 MD5 | 42 R/PBSmapping.r | 5784 +++++++++++++++++++++++-------------------------- R/dotFuns.r | 292 +- inst/doc/ChangeLog.txt | 12 man/RGB2RYB.Rd | 6 man/addCompass.Rd | 6 man/bcBathymetry.Rd | 6 man/convUL.Rd | 20 src/PBSmapping.c | 2 src/PBSmapping.h | 2 src/clipperWrapper.cpp | 6 src/clipperWrapper.h | 6 src/convGSHHS.c | 2 src/convGSHHS.h | 2 src/conversions.c | 2 src/conversions.h | 2 src/floating.h | 2 src/globals.h | 2 src/init.c | 2 src/polygons.c | 2 src/polygons.h | 2 22 files changed, 3015 insertions(+), 3197 deletions(-)
Title: Tools for Clinical Research
Description: Every research team have their own script for data management, statistics and
most importantly hemodynamic indices. The purpose is to standardize scripts
utilized in clinical research. The hemodynamic indices can be used in a long-format dataframe,
and add both periods of interest (trigger-periods), and delete artifacts with deleter-files.
Transfer function analysis (Claassen et al. (2016) <doi:10.1177/0271678X15626425>) and
Mx (Czosnyka et al. (1996) <doi:10.1161/01.str.27.10.1829>) can be calculated using this package.
Author: Markus Harboe Olsen [cre, aut],
Christian Riberholt [ctb],
Ronan Berg [ctb],
Kirsten Moeller [ctb],
Janus Christian Jakobsen [ctb],
Aksel Karl Georg Jensen [ctb]
Maintainer: Markus Harboe Olsen <oel@oelfam.com>
Diff between clintools versions 0.9.5 dated 2022-07-06 and 0.9.6 dated 2022-07-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/dilations.R | 40 ++++++++++++++++++++++++++++++++-------- man/dilations.Rd | 7 +++++-- 5 files changed, 49 insertions(+), 17 deletions(-)
Title: Accessing Statistics Canada Data Table and Vectors
Description: Searches for, accesses, and retrieves new-format and old-format Statistics Canada data
tables, as well as individual vectors, as tidy data frames. This package deals with encoding issues, allows for
bilingual English or French language data retrieval, and bundles convenience functions
to make it easier to work with retrieved table data. Optional caching features are provided.
Author: Jens von Bergmann [cre],
Dmitry Shkolnik [aut]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cansim versions 0.3.11 dated 2022-05-10 and 0.3.12 dated 2022-07-12
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------ NEWS.md | 4 ++ R/cansim.R | 46 +++++++++++++++++++------------- R/cansim_helpers.R | 22 +++++++++++++-- R/cansim_sql.R | 17 +++++++++-- README.md | 4 +- build/vignette.rds |binary inst/doc/cansim.html | 8 ++--- inst/doc/working_with_large_tables.html | 14 ++++----- 10 files changed, 91 insertions(+), 50 deletions(-)
Title: Solvers for Maximum Weight Connected Subgraph Problem and Its
Variants
Description: Algorithms for solving various Maximum
Weight Connected Subgraph Problems, including variants with
budget constraints, cardinality constraints, weighted edges and signals.
The package represents an R interface to high-efficient solvers based on
relax-and-cut approach (Álvarez-Miranda E., Sinnl M. (2017) <doi:10.1016/j.cor.2017.05.015>)
mixed-integer programming (Loboda A., Artyomov M., and Sergushichev A. (2016) <doi:10.1007/978-3-319-43681-4_17>)
and simulated annealing.
Author: Alexander Loboda [aut, cre],
Nikolay Poperechnyi [aut],
Eduardo Alvarez-Miranda [aut],
Markus Sinnl [aut],
Alexey Sergushichev [aut],
Paul Hosler Jr. [cph] ,
www.hamcrest.org [cph] ,
Barak Naveh and Contributors [cph] ,
The Apache Software Foundation [...truncated...]
Maintainer: Alexander Loboda <aleks.loboda@gmail.com>
Diff between mwcsr versions 0.1.2 dated 2021-12-19 and 0.1.6 dated 2022-07-12
DESCRIPTION | 6 MD5 | 22 - R/signal_solvers.R | 11 R/solution.R | 2 R/virgo.R | 15 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/tutorial.html | 595 ++++++++++++++++++++++++++++++++++--------- inst/java/virgo-solver.jar |binary tests/testthat/test_rmwcs.R | 8 tests/testthat/test_sgmwcs.R | 14 + tests/testthat/test_virgo.R | 9 12 files changed, 540 insertions(+), 142 deletions(-)
Title: Deployment Interface for R Markdown Documents and Shiny
Applications
Description: Programmatic deployment interface for 'RPubs', 'shinyapps.io', and
'RStudio Connect'. Supported content types include R Markdown documents,
Shiny applications, Plumber APIs, plots, and static web content.
Author: Aron Atkins [aut, cre],
Jonathan McPherson [aut],
JJ Allaire [aut],
RStudio [cph, fnd]
Maintainer: Aron Atkins <aron@rstudio.com>
Diff between rsconnect versions 0.8.26 dated 2022-05-31 and 0.8.27 dated 2022-07-12
rsconnect-0.8.26/rsconnect/R/dependencies.R |only rsconnect-0.8.27/rsconnect/DESCRIPTION | 11 rsconnect-0.8.27/rsconnect/MD5 | 27 rsconnect-0.8.27/rsconnect/NEWS.md | 20 rsconnect-0.8.27/rsconnect/R/appDependencies.R |only rsconnect-0.8.27/rsconnect/R/bundle.R | 682 +++++----- rsconnect-0.8.27/rsconnect/R/deployApp.R | 94 + rsconnect-0.8.27/rsconnect/R/utils.R | 16 rsconnect-0.8.27/rsconnect/R/writeManifest.R |only rsconnect-0.8.27/rsconnect/README.md | 2 rsconnect-0.8.27/rsconnect/man/appDependencies.Rd | 4 rsconnect-0.8.27/rsconnect/man/deployApp.Rd | 2 rsconnect-0.8.27/rsconnect/man/writeManifest.Rd | 2 rsconnect-0.8.27/rsconnect/tests/testthat/static-with-quarto-yaml |only rsconnect-0.8.27/rsconnect/tests/testthat/test-bundle.R | 85 + rsconnect-0.8.27/rsconnect/tests/testthat/test-connect.R | 6 16 files changed, 575 insertions(+), 376 deletions(-)
Title: Recurrent Neural Network
Description: Implementation of a Recurrent Neural Network architectures in native R, including Long Short-Term Memory (Hochreiter and Schmidhuber, <doi:10.1162/neco.1997.9.8.1735>), Gated Recurrent Unit (Chung et al., <arXiv:1412.3555>) and vanilla RNN.
Author: Bastiaan Quast [aut, cre] ,
Dimitri Fichou [aut]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between rnn versions 1.6.0 dated 2022-06-19 and 1.8.0 dated 2022-07-12
rnn-1.6.0/rnn/R/run.finance_demo.R |only rnn-1.6.0/rnn/R/run.rnn_demo.R |only rnn-1.6.0/rnn/inst/shinyapps |only rnn-1.6.0/rnn/man/figures |only rnn-1.6.0/rnn/man/run.finance_demo.Rd |only rnn-1.6.0/rnn/man/run.rnn_demo.Rd |only rnn-1.8.0/rnn/DESCRIPTION | 8 rnn-1.8.0/rnn/MD5 | 159 +-- rnn-1.8.0/rnn/NAMESPACE | 29 rnn-1.8.0/rnn/NEWS.md | 193 ++-- rnn-1.8.0/rnn/R/backprop_r.R | 718 ++++++++-------- rnn-1.8.0/rnn/R/bin2int.R | 44 - rnn-1.8.0/rnn/R/clean_r.R | 88 +- rnn-1.8.0/rnn/R/epoch_functions.R | 50 - rnn-1.8.0/rnn/R/init_r.R | 238 ++--- rnn-1.8.0/rnn/R/int2bin.R | 36 rnn-1.8.0/rnn/R/loss_functions.R | 48 - rnn-1.8.0/rnn/R/predictr.R | 656 +++++++-------- rnn-1.8.0/rnn/R/rnn.R | 14 rnn-1.8.0/rnn/R/trainr.R | 426 ++++----- rnn-1.8.0/rnn/R/update_r.R | 194 ++-- rnn-1.8.0/rnn/README.md | 160 +-- rnn-1.8.0/rnn/build/vignette.rds |binary rnn-1.8.0/rnn/inst/CITATION | 30 rnn-1.8.0/rnn/inst/doc/GRU_units.R | 374 ++++---- rnn-1.8.0/rnn/inst/doc/GRU_units.Rmd | 536 ++++++------ rnn-1.8.0/rnn/inst/doc/GRU_units.html | 674 +++++++-------- rnn-1.8.0/rnn/inst/doc/LSTM_units.R | 288 +++--- rnn-1.8.0/rnn/inst/doc/LSTM_units.Rmd | 454 +++++----- rnn-1.8.0/rnn/inst/doc/LSTM_units.html | 688 +++++++-------- rnn-1.8.0/rnn/inst/doc/basic_rnn.R | 278 +++--- rnn-1.8.0/rnn/inst/doc/basic_rnn.Rmd | 326 +++---- rnn-1.8.0/rnn/inst/doc/basic_rnn.html | 996 +++++++++++------------ rnn-1.8.0/rnn/inst/doc/rnn.R | 188 ++-- rnn-1.8.0/rnn/inst/doc/rnn.Rmd | 316 +++---- rnn-1.8.0/rnn/inst/doc/rnn.html | 982 +++++++++++----------- rnn-1.8.0/rnn/inst/doc/rnn_units.R | 256 ++--- rnn-1.8.0/rnn/inst/doc/rnn_units.Rmd | 358 ++++---- rnn-1.8.0/rnn/inst/doc/rnn_units.html | 608 +++++++------- rnn-1.8.0/rnn/inst/doc/sinus.R | 94 +- rnn-1.8.0/rnn/inst/doc/sinus.Rmd | 142 +-- rnn-1.8.0/rnn/inst/doc/sinus.html | 810 +++++++++--------- rnn-1.8.0/rnn/man/backprop_gru.Rd | 50 - rnn-1.8.0/rnn/man/backprop_lstm.Rd | 50 - rnn-1.8.0/rnn/man/backprop_r.Rd | 50 - rnn-1.8.0/rnn/man/backprop_rnn.Rd | 50 - rnn-1.8.0/rnn/man/bin2int.Rd | 50 - rnn-1.8.0/rnn/man/clean_lstm.Rd | 34 rnn-1.8.0/rnn/man/clean_r.Rd | 34 rnn-1.8.0/rnn/man/clean_rnn.Rd | 34 rnn-1.8.0/rnn/man/epoch_annealing.Rd | 34 rnn-1.8.0/rnn/man/epoch_print.Rd | 34 rnn-1.8.0/rnn/man/init_gru.Rd | 34 rnn-1.8.0/rnn/man/init_lstm.Rd | 34 rnn-1.8.0/rnn/man/init_r.Rd | 34 rnn-1.8.0/rnn/man/init_rnn.Rd | 34 rnn-1.8.0/rnn/man/int2bin.Rd | 54 - rnn-1.8.0/rnn/man/loss_L1.Rd | 34 rnn-1.8.0/rnn/man/predict_gru.Rd | 50 - rnn-1.8.0/rnn/man/predict_lstm.Rd | 50 - rnn-1.8.0/rnn/man/predict_rnn.Rd | 50 - rnn-1.8.0/rnn/man/predictr.Rd | 144 +-- rnn-1.8.0/rnn/man/rnn.Rd | 34 rnn-1.8.0/rnn/man/trainr.Rd | 184 ++-- rnn-1.8.0/rnn/man/update_adagrad.Rd | 34 rnn-1.8.0/rnn/man/update_r.Rd | 34 rnn-1.8.0/rnn/man/update_sgd.Rd | 34 rnn-1.8.0/rnn/tests/testthat.R | 8 rnn-1.8.0/rnn/tests/testthat/test-rnn.R | 124 +- rnn-1.8.0/rnn/vignettes/GRU_units.Rmd | 536 ++++++------ rnn-1.8.0/rnn/vignettes/LSTM.R | 456 +++++----- rnn-1.8.0/rnn/vignettes/LSTM_units.Rmd | 454 +++++----- rnn-1.8.0/rnn/vignettes/Oscilation_problem.R | 164 +-- rnn-1.8.0/rnn/vignettes/basic_rnn.Rmd | 326 +++---- rnn-1.8.0/rnn/vignettes/rnn.Rmd | 316 +++---- rnn-1.8.0/rnn/vignettes/rnn_units.Rmd | 358 ++++---- rnn-1.8.0/rnn/vignettes/shakespear_character.R | 168 +-- rnn-1.8.0/rnn/vignettes/sinus.Rmd | 142 +-- rnn-1.8.0/rnn/vignettes/test_lstm.R | 198 ++-- rnn-1.8.0/rnn/vignettes/test_seq_to_seq_unsync.R | 116 +- 80 files changed, 8038 insertions(+), 8045 deletions(-)
Title: Patient Reported Outcomes Regression Analysis
Description: Offers a variety of tools, such as specific plots and regression model approaches, for analyzing different patient reported questionnaires. Specially, mixed-effects models based on the beta-binomial distribution are implemented to deal with binomial data with over-dispersion (see Najera-Zuloaga J., Lee D.-J. and Arostegui I. (2018) <doi:10.1177/0962280217690413>).
Author: Josu Najera-Zuloaga <josunajera@gmail.com>, Dae-Jin Lee <dlee@bcamath.org>, Inmaculada Arostegui <inmaculada.arostegui@ehu.eus>
Maintainer: Josu Najera-Zuloaga <josunajera@gmail.com>
Diff between PROreg versions 1.1 dated 2020-06-13 and 1.2 dated 2022-07-12
DESCRIPTION | 13 - MD5 | 8 R/BBmm.R | 22 - R/BBreg.R | 670 ++++++++++++++++++++++++++++++------------------------------ man/BBmm.Rd | 73 +++++- 5 files changed, 417 insertions(+), 369 deletions(-)
Title: Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Description: The universal storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.14.0 dated 2022-06-23 and 0.14.1 dated 2022-07-12
DESCRIPTION | 6 - MD5 | 64 ++++++++--------- NEWS.md | 25 ++++++ R/DataFrame.R | 11 ++ R/Filter.R | 1 R/Group.R | 3 R/Query.R | 2 R/QueryCondition.R | 2 R/RcppExports.R | 8 +- R/TileDBArray.R | 63 ++++++++++++----- R/Utils.R | 4 - R/batchedQuery.R | 32 ++++++-- build/vignette.rds |binary inst/include/tiledb.h | 22 ----- inst/tinytest/test_dataframe.R | 12 ++- inst/tinytest/test_filestore.R | 3 inst/tinytest/test_filter.R | 7 + inst/tinytest/test_query.R | 4 - inst/tinytest/test_querycondition.R | 47 ++++++++++++ inst/tinytest/test_shmem.R | 15 ++++ inst/tinytest/test_tiledbarray.R | 2 inst/tinytest/test_timetravel.R | 3 man/tiledb_group_remove_member.Rd | 4 - src/RcppExports.cpp | 18 ++-- src/libtiledb.cpp | 100 ++++++++++++++++++--------- src/libtiledb.h | 16 ++-- src/nullable.cpp | 111 ++++++++++++++++++------------ src/shmem.cpp | 6 + tests/tinytest.R | 10 -- tools/ci/valgrind/buildAndCheckPackage.sh | 4 + tools/ci/valgrind/installDependencies.sh | 85 +++++++++++----------- tools/ci/valgrind/showTestLogs.sh | 2 tools/tiledbVersion.txt | 4 - 33 files changed, 453 insertions(+), 243 deletions(-)
Title: Robust Bayesian Meta-Analyses
Description: A framework for estimating ensembles of meta-analytic models
(assuming either presence or absence of the effect, heterogeneity, and
publication bias). The RoBMA framework uses Bayesian model-averaging to
combine the competing meta-analytic models into a model ensemble, weights
the posterior parameter distributions based on posterior model probabilities
and uses Bayes factors to test for the presence or absence of the
individual components (e.g., effect vs. no effect; Bartoš et al., 2021,
<doi:10.31234/osf.io/kvsp7>; Maier, Bartoš & Wagenmakers, in press,
<doi:10.31234/osf.io/u4cns>). Users can define a wide range of non-informative
or informative prior distributions for the effect size, heterogeneity,
and publication bias components (including selection models and PET-PEESE).
The package provides convenient functions for summary, visualizations, and
fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Eric-Jan Wagenmakers [ths] ,
Joris Goosen [ctb],
Matthew Denwood [cph] ,
Martyn Plummer [cph]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBMA versions 2.2.2 dated 2022-04-20 and 2.3.0 dated 2022-07-12
DESCRIPTION | 14 - MD5 | 68 +++++---- NEWS.md | 8 + R/check-input-and-settings.R | 10 + R/check-priors-and-models.R | 12 - R/diagnostics.R | 2 R/fit-and-marglik.R | 90 +++++++++--- R/main.R | 13 + R/tools.R | 3 R/transformations.R | 2 R/utilities.R | 2 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 8 - inst/doc/CustomEnsembles.html | 45 +++--- inst/doc/MedicineBMA.html | 14 - inst/doc/ReproducingBMA.html | 12 - man/RoBMA.Rd | 3 man/check_setup.Rd | 3 man/figures/README-fig_PETPEESE-1.png |binary man/figures/README-fig_forest-1.png |binary man/figures/README-fig_mu-1.png |binary man/figures/README-fig_mu_chain-1.png |binary man/figures/README-fig_mu_ind-1.png |binary man/figures/README-fig_tau-1.png |binary man/figures/README-fig_weightfunction-1.png |binary man/prior_informed.Rd | 2 src/Makevars.in | 1 src/Makevars.ucrt | 202 ++++++++++++++-------------- src/Makevars.win | 12 - src/RoBMA.cc | 6 src/distributions/DWN.cc |only src/distributions/DWN.h |only src/distributions/DWWN1.cc |only src/distributions/DWWN1.h |only src/distributions/DWWN2.cc |only src/distributions/DWWN2.h |only 38 files changed, 316 insertions(+), 218 deletions(-)
Title: Kinetic Evaluation of Chemical Degradation Data
Description: Calculation routines based on the FOCUS Kinetics Report (2006,
2014). Includes a function for conveniently defining differential equation
models, model solution based on eigenvalues if possible or using numerical
solvers. If a C compiler (on windows: 'Rtools') is installed, differential
equation models are solved using automatically generated C functions.
Heteroscedasticity can be taken into account using variance by variable or
two-component error models as described by Ranke and Meinecke (2018)
<doi:10.3390/environments6120124>. Interfaces to several nonlinear
mixed-effects model packages are available, some of which are described by
Ranke et al. (2021) <doi:10.3390/environments8080071>. Please note that no
warranty is implied for correctness of results or fitness for a particular
purpose.
Author: Johannes Ranke [aut, cre, cph]
,
Katrin Lindenberger [ctb] ),
Rene Lehmann [ctb] and invilr),
Eurofins Regulatory AG [cph]
Maintainer: Johannes Ranke <johannes.ranke@jrwb.de>
Diff between mkin versions 1.1.0 dated 2022-03-14 and 1.1.1 dated 2022-07-12
DESCRIPTION | 10 MD5 | 82 NEWS.md | 24 R/CAKE_export.R | 11 R/dimethenamid_2018.R | 75 R/mean_degparms.R | 10 R/mkinfit.R | 2 R/mkinmod.R | 4 R/mkinpredict.R | 3 R/plot.mixed.mmkin.R | 18 R/plot.mkinfit.R | 17 R/saem.R | 32 README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/FOCUS_D.html | 12 inst/doc/FOCUS_L.html | 68 inst/doc/FOCUS_L.rmd | 6 inst/doc/mkin.html | 4 inst/doc/twa.html | 2 man/CAKE_export.Rd | 4 man/dimethenamid_2018.Rd | 75 man/mean_degparms.Rd | 12 man/mkinds.Rd | 12 man/mkindsg.Rd | 12 man/plot.mixed.mmkin.Rd | 4 man/plot.mkinfit.Rd | 3 tests/testthat/FOCUS_2006_D.csf | 114 tests/testthat/FOCUS_2006_D.rds |binary tests/testthat/_snaps/plot/mixed-model-fit-for-mmkin-object.svg | 4 tests/testthat/_snaps/plot/mixed-model-fit-for-nlme-object.svg | 8 tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-mkin-transformations.svg | 2332 +++++----- tests/testthat/_snaps/plot/mixed-model-fit-for-saem-object-with-saemix-transformations.svg | 4 tests/testthat/setup_script.R | 2 tests/testthat/test_CAKE_export.R | 13 tests/testthat/test_nlme.R | 4 tests/testthat/test_saemix_parent.R | 12 vignettes/FOCUS_L.rmd | 6 vignettes/web_only/benchmarks.html | 468 +- vignettes/web_only/benchmarks.rmd | 63 vignettes/web_only/dimethenamid_2018.html | 75 vignettes/web_only/dimethenamid_2018.rmd | 22 42 files changed, 2045 insertions(+), 1590 deletions(-)
Title: Version-Control for CRAN, GitHub, and GitLab Packages
Description: Make R scripts reproducible, by ensuring that
every time a given script is run, the same version of the used packages are
loaded (instead of whichever version the user running the script happens to
have installed). This is achieved by using the command
groundhog.library() instead of the base command library(), and including a
date in the call. The date is used to call on the same version of the
package every time (the most recent version available at that date).
Load packages from CRAN, GitHub, or Gitlab.
Author: Uri Simonsohn [aut, cre] ,
Hugo Gruson [ctb, aut]
Maintainer: Uri Simonsohn <urisohn@gmail.com>
Diff between groundhog versions 1.5.0 dated 2021-09-07 and 2.0.0 dated 2022-07-12
groundhog-1.5.0/groundhog/R/install.source.R |only groundhog-1.5.0/groundhog/R/remove.conflict.R |only groundhog-1.5.0/groundhog/man/reinstall.conflicts.Rd |only groundhog-1.5.0/groundhog/man/see.unistalled.conflicts.Rd |only groundhog-2.0.0/groundhog/DESCRIPTION | 20 groundhog-2.0.0/groundhog/MD5 | 80 groundhog-2.0.0/groundhog/NAMESPACE | 6 groundhog-2.0.0/groundhog/R/check.snowball.conflict.R | 428 ++--- groundhog-2.0.0/groundhog/R/estimate.seconds.left.R | 7 groundhog-2.0.0/groundhog/R/get.active.R | 64 groundhog-2.0.0/groundhog/R/get.baton.R |only groundhog-2.0.0/groundhog/R/get.current.packages.R | 6 groundhog-2.0.0/groundhog/R/get.date.for.install.binary.R | 50 groundhog-2.0.0/groundhog/R/get.dependencies.R | 11 groundhog-2.0.0/groundhog/R/get.groundhog.folder.R | 9 groundhog-2.0.0/groundhog/R/get.snowball.R | 102 - groundhog-2.0.0/groundhog/R/get.snowball.remote.R |only groundhog-2.0.0/groundhog/R/get.version.R | 8 groundhog-2.0.0/groundhog/R/groundhog.install.R |only groundhog-2.0.0/groundhog/R/groundhog.library.R | 197 +- groundhog-2.0.0/groundhog/R/groundhog.library.single.R | 451 +---- groundhog-2.0.0/groundhog/R/groundhog.library.single.remote.R |only groundhog-2.0.0/groundhog/R/install.snowball.R | 341 ++- groundhog-2.0.0/groundhog/R/installation.feedback.R | 41 groundhog-2.0.0/groundhog/R/load.cran.toc.R | 137 - groundhog-2.0.0/groundhog/R/localize.R |only groundhog-2.0.0/groundhog/R/meta.groundhog.R | 2 groundhog-2.0.0/groundhog/R/mran.is.up.R |only groundhog-2.0.0/groundhog/R/r.version.check.R | 26 groundhog-2.0.0/groundhog/R/remote_functions.R |only groundhog-2.0.0/groundhog/R/toc.R | 9 groundhog-2.0.0/groundhog/R/update_cran.toc_if.needed.R | 64 groundhog-2.0.0/groundhog/R/utils.R | 856 ++++++++-- groundhog-2.0.0/groundhog/R/validate.clone_date.R |only groundhog-2.0.0/groundhog/R/validate.pkg_vrs.R |only groundhog-2.0.0/groundhog/R/validate_R.R |only groundhog-2.0.0/groundhog/R/verify.snowball.loaded.R |only groundhog-2.0.0/groundhog/R/zzz.R | 136 - groundhog-2.0.0/groundhog/README.md | 45 groundhog-2.0.0/groundhog/inst/cran.times.rds |binary groundhog-2.0.0/groundhog/inst/cran.toc.rds |binary groundhog-2.0.0/groundhog/inst/missing.mran.dates.rds |binary groundhog-2.0.0/groundhog/man/cross.toc.Rd | 70 groundhog-2.0.0/groundhog/man/get.groundhog.folder.Rd | 56 groundhog-2.0.0/groundhog/man/get.snowball.Rd | 66 groundhog-2.0.0/groundhog/man/groundhog.library.Rd | 87 - groundhog-2.0.0/groundhog/man/meta.groundhog.Rd | 44 groundhog-2.0.0/groundhog/man/mran.is.up.Rd |only groundhog-2.0.0/groundhog/man/toc.Rd | 58 49 files changed, 2097 insertions(+), 1380 deletions(-)
Title: Self-Attention Algorithm
Description: Self-Attention algorithm helper functions and demonstration vignettes of increasing depth on how to construct the Self-Attention algorithm, this is based on Vaswani et al. (2017) <doi:10.48550/arXiv.1706.03762>, Dan Jurafsky and James H. Martin (2022, ISBN:978-0131873216) <https://web.stanford.edu/~jurafsky/slp3/> "Speech and Language Processing (3rd ed.)" and Alex Graves (2020) <https://www.youtube.com/watch?v=AIiwuClvH6k> "Attention and Memory in Deep Learning".
Author: Bastiaan Quast [aut, cre]
Maintainer: Bastiaan Quast <bquast@gmail.com>
Diff between attention versions 0.1.0 dated 2022-06-24 and 0.2.0 dated 2022-07-12
DESCRIPTION | 8 MD5 | 52 +- NAMESPACE | 10 NEWS.md | 9 R/ComputeWeights.R | 70 +-- R/RowMax.R | 68 +- R/SoftMax.R | 50 +- R/attention.R | 100 ++-- README.md | 10 build/vignette.rds |binary inst/doc/complete_attention.R | 130 ++--- inst/doc/complete_attention.Rmd | 208 ++++---- inst/doc/complete_attention.html | 906 +++++++++++++++++++-------------------- inst/doc/simple_attention.R | 110 ++-- inst/doc/simple_attention.Rmd | 182 +++---- inst/doc/simple_attention.html | 864 ++++++++++++++++++------------------- man/ComputeWeights.Rd | 76 +-- man/RowMax.Rd | 84 +-- man/SoftMax.Rd | 70 +-- man/attention.Rd | 122 ++--- tests/testthat.R | 24 - tests/testthat/ComputeWeights.R | 48 +- tests/testthat/RowMax.R | 22 tests/testthat/SoftMax.R | 20 tests/testthat/test-name.R | 6 vignettes/complete_attention.Rmd | 208 ++++---- vignettes/simple_attention.Rmd | 182 +++---- 27 files changed, 1824 insertions(+), 1815 deletions(-)
Title: Continuous-Time Movement Modeling
Description: Functions for identifying, fitting, and applying continuous-space, continuous-time stochastic movement models to animal tracking data.
The package is described in Calabrese et al (2016) <doi:10.1111/2041-210X.12559>, with models and methods based on those introduced in
Fleming & Calabrese et al (2014) <doi:10.1086/675504>,
Fleming et al (2014) <doi:10.1111/2041-210X.12176>,
Fleming et al (2015) <doi:10.1103/PhysRevE.91.032107>,
Fleming et al (2015) <doi:10.1890/14-2010.1>,
Fleming et al (2016) <doi:10.1890/15-1607>,
Péron & Fleming et al (2016) <doi:10.1186/s40462-016-0084-7>,
Fleming & Calabrese (2017) <doi:10.1111/2041-210X.12673>,
Péron et al (2017) <doi:10.1002/ecm.1260>,
Fleming et al (2017) <doi:10.1016/j.ecoinf.2017.04.008>,
Fleming et al (2018) <doi:10.1002/eap.1704>,
Winner & Noonan et al (2018) <doi:10.1111/2041-210X.13027>,
Fleming et al (2019) <doi:10.1111/2041-210X.13270>,
Noonan & Fleming et al (2019) <doi:10.1186/s40462-019-0177-1>,
Fleming et al (2020) <doi:10.1101/2020.06.12.130195>,
Noonan et al (2021) <doi:10.1111/2041-210X.13597>,
and
Fleming et al (2022) <doi:10.1111/2041-210X.13815>.
Author: Christen H. Fleming [aut, cre],
Justin M. Calabrese [aut],
Xianghui Dong [ctb],
Kevin Winner [ctb],
Bjoern Reineking [ctb],
Guillaume Peron [ctb],
Michael J. Noonan [ctb],
Bart Kranstauber [ctb],
Eliezer Gurarie [ctb],
Kamran Safi [ctb],
Paul C. Cross [...truncated...]
Maintainer: Christen H. Fleming <flemingc@si.edu>
Diff between ctmm versions 0.6.1 dated 2021-07-28 and 1.0.0 dated 2022-07-12
ctmm-0.6.1/ctmm/R/meta.R |only ctmm-1.0.0/ctmm/DESCRIPTION | 19 ctmm-1.0.0/ctmm/MD5 | 194 ++-- ctmm-1.0.0/ctmm/NAMESPACE | 17 ctmm-1.0.0/ctmm/NEWS.md | 61 + ctmm-1.0.0/ctmm/R/1.R | 12 ctmm-1.0.0/ctmm/R/QP.R | 3 ctmm-1.0.0/ctmm/R/acf.R | 3 ctmm-1.0.0/ctmm/R/cluster.R | 2 ctmm-1.0.0/ctmm/R/color.R | 23 ctmm-1.0.0/ctmm/R/convex.R |only ctmm-1.0.0/ctmm/R/covm.R | 79 + ctmm-1.0.0/ctmm/R/ctmm.R | 6 ctmm-1.0.0/ctmm/R/ctpm.R | 342 +++----- ctmm-1.0.0/ctmm/R/diffusion.R | 228 +++-- ctmm-1.0.0/ctmm/R/distance.R | 33 ctmm-1.0.0/ctmm/R/dt.R |only ctmm-1.0.0/ctmm/R/emulate.R | 13 ctmm-1.0.0/ctmm/R/encounter.R | 25 ctmm-1.0.0/ctmm/R/export.R | 47 - ctmm-1.0.0/ctmm/R/extent.R | 26 ctmm-1.0.0/ctmm/R/fit.R | 68 + ctmm-1.0.0/ctmm/R/generic.R | 141 +-- ctmm-1.0.0/ctmm/R/grid.R | 5 ctmm-1.0.0/ctmm/R/homerange.R |only ctmm-1.0.0/ctmm/R/kalman.R | 2 ctmm-1.0.0/ctmm/R/kde.R | 248 +++++ ctmm-1.0.0/ctmm/R/krige.R | 112 -- ctmm-1.0.0/ctmm/R/lasso.R | 17 ctmm-1.0.0/ctmm/R/likelihood.R | 50 + ctmm-1.0.0/ctmm/R/math.R |only ctmm-1.0.0/ctmm/R/matrix.R | 132 ++- ctmm-1.0.0/ctmm/R/mean.R | 41 ctmm-1.0.0/ctmm/R/mean.UD.R |only ctmm-1.0.0/ctmm/R/mean.ctmm.R |only ctmm-1.0.0/ctmm/R/meta.chisq.R | 198 +++- ctmm-1.0.0/ctmm/R/meta.normal.R | 431 ++++++---- ctmm-1.0.0/ctmm/R/modes.R | 184 +--- ctmm-1.0.0/ctmm/R/npr.R |only ctmm-1.0.0/ctmm/R/numDeriv.R | 12 ctmm-1.0.0/ctmm/R/occurrence.R |only ctmm-1.0.0/ctmm/R/optim.R | 18 ctmm-1.0.0/ctmm/R/outlier.R | 49 - ctmm-1.0.0/ctmm/R/overlap.R | 112 +- ctmm-1.0.0/ctmm/R/parameters.R | 48 + ctmm-1.0.0/ctmm/R/plot.telemetry.R | 206 ++++ ctmm-1.0.0/ctmm/R/plot.variogram.R | 21 ctmm-1.0.0/ctmm/R/plot3d.R |only ctmm-1.0.0/ctmm/R/projection.R | 3 ctmm-1.0.0/ctmm/R/quant.R |only ctmm-1.0.0/ctmm/R/rsf.R | 1256 ++++++++++++++++++++++++++---- ctmm-1.0.0/ctmm/R/select.R | 59 + ctmm-1.0.0/ctmm/R/speed.R | 31 ctmm-1.0.0/ctmm/R/speeds.R | 21 ctmm-1.0.0/ctmm/R/split.R | 21 ctmm-1.0.0/ctmm/R/stats.R | 204 ++++ ctmm-1.0.0/ctmm/R/summary.ctmm.R | 324 ++++++- ctmm-1.0.0/ctmm/R/telemetry.R | 141 ++- ctmm-1.0.0/ctmm/R/tensor.R | 48 + ctmm-1.0.0/ctmm/R/time.R |only ctmm-1.0.0/ctmm/R/uere.R | 24 ctmm-1.0.0/ctmm/R/units.R | 65 + ctmm-1.0.0/ctmm/R/variogram.R | 30 ctmm-1.0.0/ctmm/R/variogram.test.R | 85 +- ctmm-1.0.0/ctmm/README.md | 2 ctmm-1.0.0/ctmm/TODO | 69 + ctmm-1.0.0/ctmm/build/partial.rdb |binary ctmm-1.0.0/ctmm/build/vignette.rds |binary ctmm-1.0.0/ctmm/inst/doc/akde.R | 49 - ctmm-1.0.0/ctmm/inst/doc/akde.Rmd | 61 + ctmm-1.0.0/ctmm/inst/doc/akde.html | 72 + ctmm-1.0.0/ctmm/inst/doc/error.html | 66 - ctmm-1.0.0/ctmm/inst/doc/periodogram.html | 107 +- ctmm-1.0.0/ctmm/inst/doc/variogram.Rmd | 2 ctmm-1.0.0/ctmm/inst/doc/variogram.html | 69 - ctmm-1.0.0/ctmm/man/RSF.fit.Rd |only ctmm-1.0.0/ctmm/man/akde.Rd | 22 ctmm-1.0.0/ctmm/man/as.telemetry.Rd | 3 ctmm-1.0.0/ctmm/man/bandwidth.Rd | 24 ctmm-1.0.0/ctmm/man/ctmm-FAQ.Rd | 5 ctmm-1.0.0/ctmm/man/ctmm-package.Rd | 17 ctmm-1.0.0/ctmm/man/ctmm.fit.Rd | 6 ctmm-1.0.0/ctmm/man/dt.plot.Rd |only ctmm-1.0.0/ctmm/man/encounter.Rd | 17 ctmm-1.0.0/ctmm/man/export.Rd | 9 ctmm-1.0.0/ctmm/man/homerange.Rd | 25 ctmm-1.0.0/ctmm/man/mean.Rd | 31 ctmm-1.0.0/ctmm/man/mean.variogram.Rd | 3 ctmm-1.0.0/ctmm/man/meta.Rd | 39 ctmm-1.0.0/ctmm/man/npr.Rd |only ctmm-1.0.0/ctmm/man/occurrence.Rd | 13 ctmm-1.0.0/ctmm/man/outlie.Rd | 2 ctmm-1.0.0/ctmm/man/overlap.Rd | 9 ctmm-1.0.0/ctmm/man/periodogram.Rd | 4 ctmm-1.0.0/ctmm/man/plot.telemetry.Rd | 47 - ctmm-1.0.0/ctmm/man/projection.Rd | 14 ctmm-1.0.0/ctmm/man/revisitation.Rd |only ctmm-1.0.0/ctmm/man/select.Rd | 6 ctmm-1.0.0/ctmm/man/speed.Rd | 12 ctmm-1.0.0/ctmm/man/summary.UD.Rd | 13 ctmm-1.0.0/ctmm/man/summary.ctmm.Rd | 10 ctmm-1.0.0/ctmm/man/variogram.Rd | 4 ctmm-1.0.0/ctmm/man/variogram.fit.Rd | 4 ctmm-1.0.0/ctmm/man/video.Rd | 2 ctmm-1.0.0/ctmm/vignettes/akde.Rmd | 61 + ctmm-1.0.0/ctmm/vignettes/variogram.Rmd | 2 106 files changed, 4600 insertions(+), 1841 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
mikefc [cph] ,
Yann Collet [cph] ,
RStudio [cph, fnd]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between rlang versions 1.0.3 dated 2022-06-27 and 1.0.4 dated 2022-07-12
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ R/session.R | 27 +++++++++++---------------- src/version.c | 2 +- tests/testthat/_snaps/session.md | 8 -------- tests/testthat/test-session.R | 25 ++++++++++++++++++++++++- 7 files changed, 54 insertions(+), 35 deletions(-)
Title: Intensive Care Unit Data with R
Description: Focused on (but not exclusive to) data sets hosted on PhysioNet
(<https://physionet.org>), 'ricu' provides utilities for download, setup
and access of intensive care unit (ICU) data sets. In addition to
functions for running arbitrary queries against available data sets, a
system for defining clinical concepts and encoding their representations
in tabular ICU data is presented.
Author: Nicolas Bennett [aut, cre],
Drago Plecko [aut],
Ida-Fong Ukor [aut]
Maintainer: Nicolas Bennett <r@nbenn.ch>
Diff between ricu versions 0.5.2 dated 2022-04-26 and 0.5.3 dated 2022-07-12
DESCRIPTION | 12 +++--- MD5 | 64 +++++++++++++++++----------------- NEWS.md | 4 ++ R/callback-sep3.R | 4 +- R/concept-load.R | 1 R/concept-utils.R | 14 ------- R/config-utils.R | 2 - R/tbl-base.R | 8 ++-- R/utils-ts.R | 14 ++++++- README.md | 14 +++---- build/vignette.rds |binary inst/doc/jss.R | 10 ++--- inst/doc/jss.Rmd | 10 ++--- inst/doc/jss.pdf |binary inst/extdata/config/concept-dict.R | 1 inst/extdata/config/concept-dict.json | 4 ++ man/attach_src.Rd | 6 ++- man/callback_itm.Rd | 12 ++++-- man/change_id.Rd | 16 +++++--- man/col_renamer.Rd | 5 -- man/concept_dictionary.Rd | 18 ++++++--- man/data_env.Rd | 34 ++++++++++++------ man/download.Rd | 16 +++++--- man/file_utils.Rd | 6 ++- man/label_sep3.Rd | 4 +- man/label_si.Rd | 18 ++++++--- man/load_src_cfg.Rd | 36 ++++++++++++------- man/ricu-package.Rd | 4 +- man/ts_utils.Rd | 4 ++ tests/testthat/_snaps/config.md | 2 - tests/testthat/helpers.R | 2 - tests/testthat/test-utils-ts.R | 3 + vignettes/jss.Rmd | 10 ++--- 33 files changed, 211 insertions(+), 147 deletions(-)
Title: Generalized Linear Mixed Models using Template Model Builder
Description: Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
Author: Mollie Brooks [aut, cre] ,
Ben Bolker [aut] ,
Kasper Kristensen [aut],
Martin Maechler [aut] ,
Arni Magnusson [aut] ,
Maeve McGillycuddy [ctb],
Hans Skaug [aut],
Anders Nielsen [aut] ,
Casper Berg [aut] ,
Koen van Bentham [aut],
Nafis Sadat [ctb] ,
D [...truncated...]
Maintainer: Mollie Brooks <mollieebrooks@gmail.com>
Diff between glmmTMB versions 1.1.3 dated 2022-03-13 and 1.1.4 dated 2022-07-12
DESCRIPTION | 70 ++++++------ MD5 | 74 ++++++------- NAMESPACE | 1 R/VarCorr.R | 2 R/diagnose.R | 84 ++++++++++----- R/family.R | 24 ++-- R/glmmTMB.R | 2 R/methods.R | 179 ++++++++++++++++++-------------- R/predict.R | 55 +++++++-- R/utils.R | 111 +++++++++++++++++-- build/partial.rdb |binary inst/Matrix-version | 2 inst/NEWS.Rd | 22 +++ inst/TMB-version | 2 inst/doc/covstruct.html | 7 - inst/doc/covstruct.rmd | 4 inst/doc/glmmTMB.pdf |binary inst/doc/mcmc.html | 4 inst/doc/miscEx.html | 4 inst/doc/model_evaluation.pdf |binary inst/doc/parallel.html | 4 inst/doc/sim.html | 4 inst/doc/troubleshooting.html | 4 inst/vignette_data/model_evaluation.rda |binary man/VarCorr.glmmTMB.Rd | 2 man/checkDepPackageVersion.Rd |only man/confint.glmmTMB.Rd | 11 + man/get_cor.Rd | 2 man/nbinom2.Rd | 4 man/predict.glmmTMB.Rd | 8 - src/glmmTMB.cpp | 7 - src/init.h | 2 src/utils.cpp | 15 -- tests/testthat/test-VarCorr.R | 2 tests/testthat/test-bootMer.R | 4 tests/testthat/test-diagnose.R |only tests/testthat/test-methods.R | 106 ++++++++++++++++-- tests/testthat/test-predict.R | 12 +- vignettes/covstruct.rmd | 4 39 files changed, 559 insertions(+), 279 deletions(-)
Title: Computing Comorbidity Scores
Description: Computing comorbidity indices and scores such as the weighted Charlson
score (Charlson, 1987 <doi:10.1016/0021-9681(87)90171-8>) and the Elixhauser
comorbidity score (Elixhauser, 1998 <doi:10.1097/00005650-199801000-00004>)
using ICD-9-CM or ICD-10 codes (Quan, 2005 <doi:10.1097/01.mlr.0000182534.19832.83>).
Australian and Swedish modifications of the Charlson Comorbidity Index are available
as well (Sundararajan, 2004 <doi:10.1016/j.jclinepi.2004.03.012> and Ludvigsson, 2021
<doi:10.2147/CLEP.S282475>).
Author: Alessandro Gasparini [aut, cre]
,
Hojjat Salmasian [ctb] ,
Jonathan Williman [ctb] ,
Sing Yi Chia [ctb] ,
Edmund Teo [ctb]
Maintainer: Alessandro Gasparini <alessandro.gasparini@ki.se>
Diff between comorbidity versions 1.0.2 dated 2022-04-06 and 1.0.3 dated 2022-07-12
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++---------- NEWS.md | 4 ++++ R/comorbidity.R | 16 ---------------- R/matchit.R | 4 ++-- R/zzz.R | 6 +++--- README.md | 5 +---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/A-introduction.html | 8 ++++---- inst/doc/B-comorbidity-scores.html | 4 ++-- tests/testthat/test-#55.R |only 12 files changed, 31 insertions(+), 45 deletions(-)
Title: A Framework for Enterprise Shiny Applications
Description: A framework that supports creating and extending enterprise Shiny applications using best practices.
Author: Kamil Zyla [aut, cre],
Jakub Nowicki [aut],
Tymoteusz Makowski [aut],
Marek Rogala [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Kamil Zyla <kamil@appsilon.com>
Diff between rhino versions 1.0.0 dated 2022-04-19 and 1.1.0 dated 2022-07-12
DESCRIPTION | 8 - MD5 | 13 +- R/app.R | 63 +++++++---- R/config.R | 10 + inst/as_top_level.R |only inst/templates/app_structure/dot.rscignore |only inst/templates/github_ci/dot.github/workflows/rhino-test.yml | 2 inst/templates/node/dot.stylelintrc.json | 8 - tests/testthat/test-app.R |only 9 files changed, 68 insertions(+), 36 deletions(-)
Title: Calculating Likelihoods by Pedigree Paring
Description: A fast and general implementation of the Elston-Stewart algorithm
that can calculate the likelihoods of large and complex pedigrees.
References for the Elston-Stewart algorithm are
Elston & Stewart (1971) <doi:10.1159/000152448>,
Lange & Elston (1975) <doi:10.1159/000152714> and
Cannings et al. (1978) <doi:10.2307/1426718>.
Author: James Dowty [aut, cre],
Kevin Wong [aut]
Maintainer: James Dowty <jgdowty@gmail.com>
Diff between clipp versions 1.1.0 dated 2021-09-07 and 1.1.1 dated 2022-07-12
DESCRIPTION | 8 +++++--- MD5 | 22 +++++++++++++++++----- R/check_dat.R | 2 +- R/dat_small.R | 1 + build |only data/dat_small.rda |binary inst |only man/dat_small.Rd | 1 + vignettes |only 9 files changed, 25 insertions(+), 9 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-10 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-03-05 1.1.15
2017-08-25 1.1.14
2016-01-07 1.1.13
2015-05-04 1.1.11
2015-01-03 1.1.10
2013-03-18 1.1.9
2012-10-29 1.1.8
2012-06-01 1.1.7
2012-05-08 1.1.6
2012-04-07 1.1.5
2012-03-23 1.1.4
2012-03-04 1.1.3
2012-01-20 1.1.2
2011-03-01 1.1.1
2011-01-25 1.1.0
2010-12-10 1.0.5
2010-11-05 1.0.4
2007-10-03 1.0.3
2007-05-10 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-12 5.0
2020-03-03 4.5
2018-09-18 4.4
2017-09-20 4.3
2016-08-30 4.2
2016-07-28 4.1
2016-05-20 4.0
2016-04-23 3.2
2016-04-08 3.0
2016-04-06 2.2
2016-03-01 2.1
2016-02-22 2.0
2016-01-26 1.0
2016-01-13 0.3
2015-12-11 0.2
2015-10-29 0.1