Title: Financial Time Series Objects (Rmetrics)
Description: 'S4' classes and various tools for financial time series:
Basic functions such as scaling and sorting, subsetting,
mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Georgi N. Boshnakov [cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeSeries versions 3062.100 dated 2020-01-24 and 4021.104 dated 2022-07-16
ChangeLog | 6 ++ DESCRIPTION | 30 +++++++------ MD5 | 16 +++---- NAMESPACE | 90 +++++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/timeSeriesPlot.pdf |binary inst/doc/timeSeriesRefCard.pdf |binary man/00timeSeries-package.Rd | 2 man/methods-plot.Rd | 2 9 files changed, 111 insertions(+), 35 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package (see also Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>) can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>.
Various risk estimation and anonymisation methods are included. Note that the package
includes a graphical user interface (Meindl and Templ, 2019 <doi:10.3390/a12090191>) that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre] ,
Bernhard Meindl [aut],
Alexander Kowarik [aut] ,
Johannes Gussenbauer [aut]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.6.1 dated 2021-07-26 and 5.7.1 dated 2022-07-16
sdcMicro-5.6.1/sdcMicro/src/init.c |only sdcMicro-5.7.1/sdcMicro/DESCRIPTION | 32 sdcMicro-5.7.1/sdcMicro/MD5 | 80 sdcMicro-5.7.1/sdcMicro/NAMESPACE | 5 sdcMicro-5.7.1/sdcMicro/NEWS | 11 sdcMicro-5.7.1/sdcMicro/R/GUIfunctions.R | 30 sdcMicro-5.7.1/sdcMicro/R/RcppExports.R | 155 sdcMicro-5.7.1/sdcMicro/R/aux_functions.r | 115 sdcMicro-5.7.1/sdcMicro/R/createDat.R |only sdcMicro-5.7.1/sdcMicro/R/infoLoss.R |only sdcMicro-5.7.1/sdcMicro/R/localSupp.R | 4 sdcMicro-5.7.1/sdcMicro/R/recordSwap.R |only sdcMicro-5.7.1/sdcMicro/R/riskyCells.R | 5 sdcMicro-5.7.1/sdcMicro/R/sdcMicro-package.R | 7 sdcMicro-5.7.1/sdcMicro/R/zzz.R | 4 sdcMicro-5.7.1/sdcMicro/build/partial.rdb |binary sdcMicro-5.7.1/sdcMicro/build/vignette.rds |binary sdcMicro-5.7.1/sdcMicro/data/CASCrefmicrodata.rda |binary sdcMicro-5.7.1/sdcMicro/data/EIA.rda |binary sdcMicro-5.7.1/sdcMicro/data/Tarragona.rda |binary sdcMicro-5.7.1/sdcMicro/data/casc1.rda |binary sdcMicro-5.7.1/sdcMicro/data/francdat.rda |binary sdcMicro-5.7.1/sdcMicro/data/free1.rda |binary sdcMicro-5.7.1/sdcMicro/data/microData.rda |binary sdcMicro-5.7.1/sdcMicro/data/testdata.RData |binary sdcMicro-5.7.1/sdcMicro/data/testdata2.RData |binary sdcMicro-5.7.1/sdcMicro/inst/doc/recordSwapping.R |only sdcMicro-5.7.1/sdcMicro/inst/doc/recordSwapping.Rmd |only sdcMicro-5.7.1/sdcMicro/inst/doc/recordSwapping.html |only sdcMicro-5.7.1/sdcMicro/inst/doc/sdcMicro.html | 2208 ++++++++-- sdcMicro-5.7.1/sdcMicro/inst/doc/sdc_guidelines.pdf |binary sdcMicro-5.7.1/sdcMicro/inst/shiny/sdcApp/ui.R | 6 sdcMicro-5.7.1/sdcMicro/man/distributeDraws_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/distributeRandom_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/infoLoss.Rd |only sdcMicro-5.7.1/sdcMicro/man/orderData_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/randSample_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/recordSwap.Rd |only sdcMicro-5.7.1/sdcMicro/man/recordSwap_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/sampleDonor_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/sdcMicro-package.Rd | 7 sdcMicro-5.7.1/sdcMicro/man/setLevels_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/man/setRisk_cpp.Rd |only sdcMicro-5.7.1/sdcMicro/src/Makevars.makefile |only sdcMicro-5.7.1/sdcMicro/src/Makevars.win |only sdcMicro-5.7.1/sdcMicro/src/RcppExports.cpp | 222 + sdcMicro-5.7.1/sdcMicro/src/recordSwap |only sdcMicro-5.7.1/sdcMicro/src/recordSwap_R.cpp |only sdcMicro-5.7.1/sdcMicro/tests/testthat/test_infoLoss.R |only sdcMicro-5.7.1/sdcMicro/tests/testthat/test_recordSwap_inputs.R |only sdcMicro-5.7.1/sdcMicro/tests/testthat/test_recordSwap_outputs.R |only sdcMicro-5.7.1/sdcMicro/tests/testthat/test_recordSwap_sdcObj.R |only sdcMicro-5.7.1/sdcMicro/vignettes/diagram.png |only sdcMicro-5.7.1/sdcMicro/vignettes/recordSwapping.Rmd |only 54 files changed, 2508 insertions(+), 383 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 1.0.1 dated 2022-07-13 and 1.0.2 dated 2022-07-16
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/get_estimates.R | 24 ------------------------ R/hush.R | 7 ++++++- build/modelsummary.pdf |binary tests/testthat/test-pkg-lme4.R | 22 +++------------------- 7 files changed, 22 insertions(+), 53 deletions(-)
Title: Comprehensive Luminescence Dating Data Analysis
Description: A collection of various R functions for the purpose of Luminescence
dating data analysis. This includes, amongst others, data import, export,
application of age models, curve deconvolution, sequence analysis and
plotting of equivalent dose distributions.
Author: Sebastian Kreutzer [aut, trl, cre, dtc]
,
Christoph Burow [aut, trl, dtc]
,
Michael Dietze [aut] ,
Margret C. Fuchs [aut] ,
Christoph Schmidt [aut] ,
Manfred Fischer [aut, trl],
Johannes Friedrich [aut] ,
Norbert Mercier [aut] ,
Rachel K. Smedley [ct [...truncated...]
Maintainer: Sebastian Kreutzer <sebastian.kreutzer@uni-heidelberg.de>
Diff between Luminescence versions 0.9.19 dated 2022-03-10 and 0.9.20 dated 2022-07-16
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Luminescence-0.9.20/Luminescence/R/Risoe.BINfileData-class.R | 2 Luminescence-0.9.20/Luminescence/R/Risoe.BINfileData2RLum.Analysis.R | 2 Luminescence-0.9.20/Luminescence/R/Risoe.BINfileData2RLum.Data.Curve.R | 2 Luminescence-0.9.20/Luminescence/R/Second2Gray.R | 2 Luminescence-0.9.20/Luminescence/R/addins_RLum.R | 4 Luminescence-0.9.20/Luminescence/R/analyse_Al2O3C_CrossTalk.R | 2 Luminescence-0.9.20/Luminescence/R/analyse_Al2O3C_ITC.R | 46 Luminescence-0.9.20/Luminescence/R/analyse_Al2O3C_Measurement.R | 43 Luminescence-0.9.20/Luminescence/R/analyse_FadingMeasurement.R | 2 Luminescence-0.9.20/Luminescence/R/analyse_IRSAR.RF.R | 2 Luminescence-0.9.20/Luminescence/R/analyse_SAR.TL.R | 2 Luminescence-0.9.20/Luminescence/R/analyse_baSAR.R | 2 Luminescence-0.9.20/Luminescence/R/analyse_pIRIRSequence.R | 2 Luminescence-0.9.20/Luminescence/R/apply_CosmicRayRemoval.R | 2 Luminescence-0.9.20/Luminescence/R/bin_RLum.Data.R | 2 Luminescence-0.9.20/Luminescence/R/calc_AverageDose.R | 2 Luminescence-0.9.20/Luminescence/R/calc_FadingCorr.R | 2 Luminescence-0.9.20/Luminescence/R/calc_FuchsLang2001.R | 2 Luminescence-0.9.20/Luminescence/R/calc_Lamothe2003.R | 65 + Luminescence-0.9.20/Luminescence/R/calc_OSLLxTxRatio.R | 2 Luminescence-0.9.20/Luminescence/R/calc_SourceDoseRate.R | 2 Luminescence-0.9.20/Luminescence/R/calc_TLLxTxRatio.R | 2 Luminescence-0.9.20/Luminescence/R/calc_ThermalLifetime.R | 2 Luminescence-0.9.20/Luminescence/R/calc_WodaFuchs2008.R | 2 Luminescence-0.9.20/Luminescence/R/calc_gSGC.R | 2 Luminescence-0.9.20/Luminescence/R/calc_gSGC_feldspar.R | 2 Luminescence-0.9.20/Luminescence/R/combine_De_Dr.R | 6 Luminescence-0.9.20/Luminescence/R/convert_Activity2Concentration.R | 6 Luminescence-0.9.20/Luminescence/R/convert_BIN2CSV.R | 2 Luminescence-0.9.20/Luminescence/R/convert_Daybreak2CSV.R | 2 Luminescence-0.9.20/Luminescence/R/convert_PSL2CSV.R | 2 Luminescence-0.9.20/Luminescence/R/convert_RLum2Risoe.BINfileData.R | 2 Luminescence-0.9.20/Luminescence/R/convert_SG2MG.R | 2 Luminescence-0.9.20/Luminescence/R/convert_Wavelength2Energy.R | 2 Luminescence-0.9.20/Luminescence/R/convert_XSYG2CSV.R | 2 Luminescence-0.9.20/Luminescence/R/extract_IrradiationTimes.R | 2 Luminescence-0.9.20/Luminescence/R/extract_ROI.R | 2 Luminescence-0.9.20/Luminescence/R/fit_CWCurve.R | 2 Luminescence-0.9.20/Luminescence/R/fit_EmissionSpectra.R | 4 Luminescence-0.9.20/Luminescence/R/fit_LMCurve.R | 2 Luminescence-0.9.20/Luminescence/R/fit_ThermalQuenching.R | 2 Luminescence-0.9.20/Luminescence/R/get_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/get_Risoe.BINfileData.R | 2 Luminescence-0.9.20/Luminescence/R/internals_RLum.R | 98 +- Luminescence-0.9.20/Luminescence/R/length_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/merge_RLum.Analysis.R | 2 Luminescence-0.9.20/Luminescence/R/merge_RLum.Data.Curve.R | 96 -- Luminescence-0.9.20/Luminescence/R/merge_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/merge_RLum.Results.R | 2 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| 2 Luminescence-0.9.20/Luminescence/R/plot_Risoe.BINfileData.R | 2 Luminescence-0.9.20/Luminescence/R/plot_ViolinPlot.R | 2 Luminescence-0.9.20/Luminescence/R/read_BIN2R.R | 30 Luminescence-0.9.20/Luminescence/R/read_Daybreak2R.R | 2 Luminescence-0.9.20/Luminescence/R/read_SPE2R.R | 2 Luminescence-0.9.20/Luminescence/R/read_TIFF2R.R | 2 Luminescence-0.9.20/Luminescence/R/read_XSYG2R.R | 7 Luminescence-0.9.20/Luminescence/R/replicate_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/report_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/set_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/set_Risoe.BINfileData.R | 2 Luminescence-0.9.20/Luminescence/R/smooth_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/structure_RLum.R | 2 Luminescence-0.9.20/Luminescence/R/template_DRAC.R | 2 Luminescence-0.9.20/Luminescence/R/use_DRAC.R | 2 Luminescence-0.9.20/Luminescence/R/verify_SingleGrainData.R | 2 Luminescence-0.9.20/Luminescence/R/write_R2BIN.R | 183 --- 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Luminescence-0.9.20/Luminescence/man/analyse_baSAR.Rd | 10 Luminescence-0.9.20/Luminescence/man/analyse_pIRIRSequence.Rd | 4 Luminescence-0.9.20/Luminescence/man/analyse_portableOSL.Rd | 2 Luminescence-0.9.20/Luminescence/man/apply_CosmicRayRemoval.Rd | 4 Luminescence-0.9.20/Luminescence/man/apply_EfficiencyCorrection.Rd | 2 Luminescence-0.9.20/Luminescence/man/bin_RLum.Data.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_AliquotSize.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_AverageDose.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_CentralDose.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_CobbleDoseRate.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_CommonDose.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_CosmicDoseRate.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_FadingCorr.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_FastRatio.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_FiniteMixture.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_FuchsLang2001.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_HomogeneityTest.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_Huntley2006.Rd | 14 Luminescence-0.9.20/Luminescence/man/calc_IEU.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_Kars2008.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_Lamothe2003.Rd | 62 + Luminescence-0.9.20/Luminescence/man/calc_MaxDose.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_MinDose.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_OSLLxTxDecomposed.Rd | 8 Luminescence-0.9.20/Luminescence/man/calc_OSLLxTxRatio.Rd | 16 Luminescence-0.9.20/Luminescence/man/calc_SourceDoseRate.Rd | 10 Luminescence-0.9.20/Luminescence/man/calc_Statistics.Rd | 2 Luminescence-0.9.20/Luminescence/man/calc_TLLxTxRatio.Rd | 10 Luminescence-0.9.20/Luminescence/man/calc_ThermalLifetime.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_WodaFuchs2008.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_gSGC.Rd | 4 Luminescence-0.9.20/Luminescence/man/calc_gSGC_feldspar.Rd | 4 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Luminescence-0.9.20/Luminescence/man/fit_OSLLifeTimes.Rd | 2 Luminescence-0.9.20/Luminescence/man/fit_SurfaceExposure.Rd | 8 Luminescence-0.9.20/Luminescence/man/fit_ThermalQuenching.Rd | 4 Luminescence-0.9.20/Luminescence/man/get_Layout.Rd | 2 Luminescence-0.9.20/Luminescence/man/get_Quote.Rd | 2 Luminescence-0.9.20/Luminescence/man/get_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/get_Risoe.BINfileData.Rd | 4 Luminescence-0.9.20/Luminescence/man/get_rightAnswer.Rd | 2 Luminescence-0.9.20/Luminescence/man/length_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/merge_RLum.Analysis.Rd | 4 Luminescence-0.9.20/Luminescence/man/merge_RLum.Data.Curve.Rd | 6 Luminescence-0.9.20/Luminescence/man/merge_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/merge_RLum.Results.Rd | 4 Luminescence-0.9.20/Luminescence/man/merge_Risoe.BINfileData.Rd | 4 Luminescence-0.9.20/Luminescence/man/names_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_AbanicoPlot.Rd | 19 Luminescence-0.9.20/Luminescence/man/plot_DRCSummary.Rd | 10 Luminescence-0.9.20/Luminescence/man/plot_DRTResults.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_DetPlot.Rd | 2 Luminescence-0.9.20/Luminescence/man/plot_FilterCombinations.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_GrowthCurve.Rd | 6 Luminescence-0.9.20/Luminescence/man/plot_Histogram.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_KDE.Rd | 2 Luminescence-0.9.20/Luminescence/man/plot_NRt.Rd | 2 Luminescence-0.9.20/Luminescence/man/plot_OSLAgeSummary.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_RLum.Analysis.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_RLum.Data.Curve.Rd | 6 Luminescence-0.9.20/Luminescence/man/plot_RLum.Data.Image.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_RLum.Data.Spectrum.Rd | 14 Luminescence-0.9.20/Luminescence/man/plot_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_RLum.Results.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_ROI.Rd | 2 Luminescence-0.9.20/Luminescence/man/plot_RadialPlot.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_Risoe.BINfileData.Rd | 4 Luminescence-0.9.20/Luminescence/man/plot_ViolinPlot.Rd | 4 Luminescence-0.9.20/Luminescence/man/read_BIN2R.Rd | 12 Luminescence-0.9.20/Luminescence/man/read_Daybreak2R.Rd | 4 Luminescence-0.9.20/Luminescence/man/read_PSL2R.Rd | 2 Luminescence-0.9.20/Luminescence/man/read_RF2R.Rd | 2 Luminescence-0.9.20/Luminescence/man/read_SPE2R.Rd | 4 Luminescence-0.9.20/Luminescence/man/read_TIFF2R.Rd | 4 Luminescence-0.9.20/Luminescence/man/read_XSYG2R.Rd | 10 Luminescence-0.9.20/Luminescence/man/replicate_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/report_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/sTeve.Rd | 2 Luminescence-0.9.20/Luminescence/man/scale_GammaDose.Rd | 8 Luminescence-0.9.20/Luminescence/man/set_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/set_Risoe.BINfileData.Rd | 4 Luminescence-0.9.20/Luminescence/man/smooth_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/structure_RLum.Rd | 4 Luminescence-0.9.20/Luminescence/man/template_DRAC.Rd | 4 Luminescence-0.9.20/Luminescence/man/tune_Data.Rd | 2 Luminescence-0.9.20/Luminescence/man/use_DRAC.Rd | 4 Luminescence-0.9.20/Luminescence/man/verify_SingleGrainData.Rd | 4 Luminescence-0.9.20/Luminescence/man/write_R2BIN.Rd | 22 Luminescence-0.9.20/Luminescence/man/write_R2TIFF.Rd | 4 Luminescence-0.9.20/Luminescence/man/write_RLum2CSV.Rd | 2 Luminescence-0.9.20/Luminescence/tests/testthat/test_analyse_Al2O3C_Measurement.R | 4 Luminescence-0.9.20/Luminescence/tests/testthat/test_internals.R | 5 Luminescence-0.9.20/Luminescence/tests/testthat/test_merge_RLumDataCurve.R | 10 Luminescence-0.9.20/Luminescence/tests/testthat/test_plot_DRCSummary.R | 28 Luminescence-0.9.20/Luminescence/tests/testthat/test_plot_RLum.Data.Spectrum.R | 24 241 files changed, 1359 insertions(+), 1143 deletions(-)
Title: Topic-Specific Diagnostics for LDA and CTM Topic Models
Description: Calculates topic-specific diagnostics (e.g. mean token length, exclusivity) for
Latent Dirichlet Allocation and Correlated Topic Models fit using the 'topicmodels' package.
For more details, see Chapter 12 in Airoldi et al. (2014, ISBN:9781466504080),
pp 262-272 Mimno et al. (2011, ISBN:9781937284114), and Bischof et al. (2014) <arXiv:1206.4631v1>.
Author: Doug Friedman [aut, cre]
Maintainer: Doug Friedman <doug.nhp@gmail.com>
Diff between topicdoc versions 0.1.0 dated 2019-10-18 and 0.1.1 dated 2022-07-16
DESCRIPTION | 11 - MD5 | 21 +- NEWS.md |only R/topic_coherence.R | 2 README.md | 32 ++- build/vignette.rds |binary inst/doc/basic_usage.R | 8 inst/doc/basic_usage.html | 320 ++++++++-------------------------- man/doc_prominence.Rd | 7 man/figures/README-example_plot-1.png |binary man/topic_coherence.Rd | 5 man/topic_diagnostics.Rd | 8 12 files changed, 134 insertions(+), 280 deletions(-)
Title: 'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest
Neighbors
Description: 'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This
package provides a minimal R interface by relying on the 'Rcpp' package. See
<https://github.com/nmslib/hnswlib> for more on 'hnswlib'. 'hnswlib' is
released under Version 2.0 of the Apache License.
Author: James Melville [aut, cre],
Aaron Lun [ctb],
Samuel Granjeaud [ctb],
Dmitriy Selivanov [ctb],
Yuxing Liao [ctb]
Maintainer: James Melville <jlmelville@gmail.com>
Diff between RcppHNSW versions 0.3.0 dated 2020-09-06 and 0.4.0 dated 2022-07-16
DESCRIPTION | 11 MD5 | 24 NEWS.md | 122 - R/hnsw.R | 182 +- inst/include/RcppPerpendicular/RcppPerpendicular.h | 19 inst/include/bruteforce.h | 266 +-- inst/include/hnswalg.h | 1573 +++++++++++---------- inst/include/hnswlib.h | 184 +- inst/include/space_ip.h | 168 +- inst/include/space_l2.h | 160 +- inst/include/visited_list_pool.h | 1 man/hnsw_knn.Rd | 3 src/RcppExports.cpp | 5 13 files changed, 1661 insertions(+), 1057 deletions(-)
Title: Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Description: Analyze and model heteroskedastic behavior in financial time series.
Author: Diethelm Wuertz [aut],
Yohan Chalabi [aut],
Tobias Setz [aut,cre],
Chris Boudt [ctb],
Pierre Chausse [ctb],
Michal Miklovac [ctb],
Martin Maechler [aut]
Maintainer: Tobias Setz <tobias.setz@live.com>
Diff between fGarch versions 3042.83.2 dated 2020-03-07 and 4021.86 dated 2022-07-16
fGarch-3042.83.2/fGarch/data/dem2gbp.csv.bz2 |only fGarch-3042.83.2/fGarch/data/sp500dge.csv.bz2 |only fGarch-4021.86/fGarch/DESCRIPTION | 28 - fGarch-4021.86/fGarch/MD5 | 78 +-- fGarch-4021.86/fGarch/NAMESPACE | 76 ++- fGarch-4021.86/fGarch/R/dist-gedFit.R | 56 +- fGarch-4021.86/fGarch/R/dist-sgedFit.R | 4 fGarch-4021.86/fGarch/R/dist-snormFit.R | 4 fGarch-4021.86/fGarch/R/dist-sstdFit.R | 4 fGarch-4021.86/fGarch/R/dist-stdFit.R | 4 fGarch-4021.86/fGarch/R/garch-FitFromFormula.R | 7 fGarch-4021.86/fGarch/R/garch-FitFromSpec.R | 94 +-- fGarch-4021.86/fGarch/R/garch-FitInternal.R | 14 fGarch-4021.86/fGarch/R/garch-Hessian.R | 40 - fGarch-4021.86/fGarch/R/garch-Sim.R | 2 fGarch-4021.86/fGarch/R/loglik.R | 1 fGarch-4021.86/fGarch/R/methods-plot.R | 64 +- fGarch-4021.86/fGarch/R/zzz.R | 53 -- fGarch-4021.86/fGarch/data/dem2gbp.csv.gz |only fGarch-4021.86/fGarch/data/sp500dge.csv.gz |only fGarch-4021.86/fGarch/inst/NEWS.Rd |only fGarch-4021.86/fGarch/inst/unitTests/runit.formula-methods.R | 9 fGarch-4021.86/fGarch/inst/unitTests/runit.garchFit.R | 4 fGarch-4021.86/fGarch/inst/unitTests/runit.garchFit.aparch.R | 2 fGarch-4021.86/fGarch/inst/unitTests/runit.garchFit.faked.R | 10 fGarch-4021.86/fGarch/inst/unitTests/runit.sged.R | 2 fGarch-4021.86/fGarch/inst/unitTests/runit.snorm.R | 2 fGarch-4021.86/fGarch/inst/unitTests/runit.sstd.R | 2 fGarch-4021.86/fGarch/man/dist-snorm.Rd | 36 - fGarch-4021.86/fGarch/man/garchFit.Rd | 270 +++++------ fGarch-4021.86/fGarch/man/garchFitControl.Rd | 219 ++++---- fGarch-4021.86/fGarch/man/methods-coef.Rd | 36 - fGarch-4021.86/fGarch/man/methods-fitted.Rd | 48 - fGarch-4021.86/fGarch/man/methods-formula.Rd | 1 fGarch-4021.86/fGarch/man/methods-predict.Rd | 26 - fGarch-4021.86/fGarch/man/methods-residuals.Rd | 83 +-- fGarch-4021.86/fGarch/man/methods-show.Rd | 35 - fGarch-4021.86/fGarch/man/methods-summary.Rd | 21 fGarch-4021.86/fGarch/man/methods-volatility.Rd | 113 +--- fGarch-4021.86/fGarch/src/dist.f | 13 fGarch-4021.86/fGarch/src/init.c |only fGarch-4021.86/fGarch/src/llhGarch.f | 7 fGarch-4021.86/fGarch/src/math.f | 25 - 43 files changed, 694 insertions(+), 799 deletions(-)
Title: Workflow for Open Reproducible Code in Science
Description: Create reproducible and transparent research projects in 'R'.
This package is based on the Workflow for Open
Reproducible Code in Science (WORCS), a step-by-step procedure based on best
practices for
Open Science. It includes an 'RStudio' project template, several
convenience functions, and all dependencies required to make your project
reproducible and transparent. WORCS is explained in the tutorial paper
by Van Lissa, Brandmaier, Brinkman, Lamprecht, Struiksma, & Vreede (2021).
<doi:10.3233/DS-210031>.
Author: Caspar J. Van Lissa [aut, cre]
,
Aaron Peikert [aut] ,
Andreas M. Brandmaier [aut]
Maintainer: Caspar J. Van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between worcs versions 0.1.8 dated 2021-02-02 and 0.1.9 dated 2022-07-16
worcs-0.1.8/worcs/tests/testthat/test-test-closed_data.R |only worcs-0.1.9/worcs/DESCRIPTION | 28 worcs-0.1.9/worcs/MD5 | 128 - worcs-0.1.9/worcs/NAMESPACE | 19 worcs-0.1.9/worcs/R/add_synthetic.R | 26 worcs-0.1.9/worcs/R/check_installation.R |only worcs-0.1.9/worcs/R/citations.R | 46 worcs-0.1.9/worcs/R/codebook.R | 4 worcs-0.1.9/worcs/R/descriptives.R | 11 worcs-0.1.9/worcs/R/label_data.R |only worcs-0.1.9/worcs/R/save_load.R | 155 + worcs-0.1.9/worcs/R/synthetic.R | 8 worcs-0.1.9/worcs/R/worcs_checklist.R | 4 worcs-0.1.9/worcs/R/worcs_project.R | 213 +- worcs-0.1.9/worcs/build/partial.rdb |only worcs-0.1.9/worcs/build/vignette.rds |binary worcs-0.1.9/worcs/inst/doc/citation.html | 72 worcs-0.1.9/worcs/inst/doc/git_cloud.Rmd | 4 worcs-0.1.9/worcs/inst/doc/git_cloud.html | 151 + worcs-0.1.9/worcs/inst/doc/reproduce.Rmd | 4 worcs-0.1.9/worcs/inst/doc/reproduce.html | 101 - worcs-0.1.9/worcs/inst/doc/setup-docker.html | 73 worcs-0.1.9/worcs/inst/doc/setup.Rmd | 23 worcs-0.1.9/worcs/inst/doc/setup.html | 119 - worcs-0.1.9/worcs/inst/doc/workflow.Rmd | 16 worcs-0.1.9/worcs/inst/doc/workflow.html | 328 ++- worcs-0.1.9/worcs/inst/rstudio/addins.dcf | 6 worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by-nc-nd_4.0.txt | 806 ++++----- worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by-nc-sa_4.0.txt | 876 +++++----- worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by-nc_4.0.txt | 816 ++++----- worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by-nd_4.0.txt | 782 ++++---- worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by-sa_4.0.txt | 856 ++++----- worcs-0.1.9/worcs/inst/rstudio/templates/project/licenses/cc_by_4.0.txt | 792 ++++----- worcs-0.1.9/worcs/inst/rstudio/templates/project/worcs.dcf | 4 worcs-0.1.9/worcs/man/add_manuscript.Rd | 156 + worcs-0.1.9/worcs/man/add_preregistration.Rd | 117 - worcs-0.1.9/worcs/man/check_worcs.Rd | 60 worcs-0.1.9/worcs/man/check_worcs_installation.Rd |only worcs-0.1.9/worcs/man/cite_all.Rd | 78 worcs-0.1.9/worcs/man/cite_essential.Rd | 78 worcs-0.1.9/worcs/man/closed_data.Rd | 21 worcs-0.1.9/worcs/man/codebook.Rd | 140 - worcs-0.1.9/worcs/man/data_label.Rd |only worcs-0.1.9/worcs/man/data_unlabel.Rd |only worcs-0.1.9/worcs/man/descriptives.Rd | 44 worcs-0.1.9/worcs/man/export_project.Rd | 70 worcs-0.1.9/worcs/man/git_user.Rd | 72 worcs-0.1.9/worcs/man/has_git_user.Rd | 42 worcs-0.1.9/worcs/man/load_data.Rd | 139 - worcs-0.1.9/worcs/man/load_entrypoint.Rd | 84 worcs-0.1.9/worcs/man/open_data.Rd | 135 - worcs-0.1.9/worcs/man/skew_kurtosis.Rd | 60 worcs-0.1.9/worcs/man/synthetic.Rd | 9 worcs-0.1.9/worcs/man/worcs_badge.Rd | 82 worcs-0.1.9/worcs/man/worcs_checklist.Rd | 72 worcs-0.1.9/worcs/man/worcs_project.Rd | 154 - worcs-0.1.9/worcs/tests/testthat/test-add_manuscript.R | 46 worcs-0.1.9/worcs/tests/testthat/test-add_preregistration.R | 2 worcs-0.1.9/worcs/tests/testthat/test-citations.R | 8 worcs-0.1.9/worcs/tests/testthat/test-closed_data.R |only worcs-0.1.9/worcs/tests/testthat/test-codebook.R | 6 worcs-0.1.9/worcs/tests/testthat/test-descriptives.R | 1 worcs-0.1.9/worcs/tests/testthat/test-save_load_expression.R |only worcs-0.1.9/worcs/tests/testthat/test-worcs_project.R | 2 worcs-0.1.9/worcs/tests/testthat/test-worcsfile.R | 78 worcs-0.1.9/worcs/tests/testthat/test.yaml |only worcs-0.1.9/worcs/vignettes/git_cloud.Rmd | 4 worcs-0.1.9/worcs/vignettes/reproduce.Rmd | 4 worcs-0.1.9/worcs/vignettes/setup.Rmd | 23 worcs-0.1.9/worcs/vignettes/workflow.Rmd | 16 70 files changed, 4518 insertions(+), 3756 deletions(-)
Title: Single-Cell Integrator and Batch Effect Remover
Description: Remove batch effects by projecting query batches into the reference batch space.
Author: Dailin Gan [aut, cre] ,
Jun Li [aut]
Maintainer: Dailin Gan <dgan@nd.edu>
Diff between SCIBER versions 0.1.4 dated 2022-07-14 and 0.1.5 dated 2022-07-16
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/main.R | 8 +------- inst/doc/my-vignette.html | 2 +- man/SCIBER.Rd | 3 --- tests/testthat/test-SCIBER.R | 2 +- 6 files changed, 11 insertions(+), 20 deletions(-)
Title: Helper Package for Installing OpenCV with R
Description: Installs 'OpenCV' for use by other packages. 'OpenCV' <https://opencv.org/>
is library of programming functions mainly aimed at real-time computer
vision. This 'Lite' version contains the stable base version of 'OpenCV' and
does not contain any of its externally contributed modules.
Author: Simon Garnier [aut, cre] ,
Muschelli John [ctb]
Maintainer: Simon Garnier <garnier@njit.edu>
Diff between ROpenCVLite versions 4.55.2 dated 2022-05-18 and 4.60.1 dated 2022-07-16
ROpenCVLite-4.55.2/ROpenCVLite/inst/OpenCVModule.4.5.5.cmake |only ROpenCVLite-4.60.1/ROpenCVLite/DESCRIPTION | 8 ++-- ROpenCVLite-4.60.1/ROpenCVLite/MD5 | 10 ++--- ROpenCVLite-4.60.1/ROpenCVLite/NEWS.md | 12 ++++++ ROpenCVLite-4.60.1/ROpenCVLite/R/opencv.R | 22 +++++------ ROpenCVLite-4.60.1/ROpenCVLite/build/vignette.rds |binary ROpenCVLite-4.60.1/ROpenCVLite/inst/OpenCVModule.4.6.0.cmake |only 7 files changed, 32 insertions(+), 20 deletions(-)
Title: Robust Bayesian Meta-Analyses
Description: A framework for estimating ensembles of meta-analytic models
(assuming either presence or absence of the effect, heterogeneity, and
publication bias). The RoBMA framework uses Bayesian model-averaging to
combine the competing meta-analytic models into a model ensemble, weights
the posterior parameter distributions based on posterior model probabilities
and uses Bayes factors to test for the presence or absence of the
individual components (e.g., effect vs. no effect; Bartoš et al., 2021,
<doi:10.31234/osf.io/kvsp7>; Maier, Bartoš & Wagenmakers, in press,
<doi:10.31234/osf.io/u4cns>). Users can define a wide range of non-informative
or informative prior distributions for the effect size, heterogeneity,
and publication bias components (including selection models and PET-PEESE).
The package provides convenient functions for summary, visualizations, and
fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Eric-Jan Wagenmakers [ths] ,
Joris Goosen [ctb],
Matthew Denwood [cph] ,
Martyn Plummer [cph]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBMA versions 2.3.0 dated 2022-07-12 and 2.3.1 dated 2022-07-16
DESCRIPTION | 6 MD5 | 76 ++++++------ NEWS.md | 6 R/fit-and-marglik.R | 10 - R/utilities.R | 1 build/partial.rdb |binary inst/doc/CustomEnsembles.html | 4 inst/doc/MedicineBMA.html | 4 inst/doc/ReproducingBMA.html | 4 man/Anderson2010.Rd | 52 ++++---- man/Bem2011.Rd | 54 ++++---- man/Poulsen2006.Rd | 56 ++++----- man/RoBMA-package.Rd | 86 ++++++------- man/RoBMA_control.Rd | 142 +++++++++++----------- man/RoBMA_options.Rd | 54 ++++---- man/check_RoBMA.Rd | 40 +++--- man/check_setup.Rd | 224 ++++++++++++++++++------------------ man/combine_data.Rd | 216 +++++++++++++++++----------------- man/effect_sizes.Rd | 186 ++++++++++++++--------------- man/forest.Rd | 144 +++++++++++------------ man/interpret.Rd | 42 +++--- man/plot.RoBMA.Rd | 218 +++++++++++++++++------------------ man/plot_models.Rd | 164 +++++++++++++------------- man/print.RoBMA.Rd | 44 +++---- man/print.summary.RoBMA.Rd | 44 +++---- man/prior.Rd | 170 +++++++++++++-------------- man/prior_PEESE.Rd | 156 ++++++++++++------------- man/prior_PET.Rd | 156 ++++++++++++------------- man/prior_informed.Rd | 138 +++++++++++----------- man/prior_none.Rd | 80 ++++++------ man/prior_weightfunction.Rd | 108 ++++++++--------- man/sample_sizes.Rd | 120 +++++++++---------- man/standard_errors.Rd | 190 +++++++++++++++--------------- man/summary.RoBMA.Rd | 176 ++++++++++++++-------------- man/weighted_multivariate_normal.Rd | 72 +++++------ man/weighted_normal.Rd | 206 ++++++++++++++++----------------- src/distributions/DWN.cc | 2 src/distributions/DWWN1.cc | 2 src/distributions/DWWN2.cc | 2 39 files changed, 1730 insertions(+), 1725 deletions(-)
Title: Download and Parse Public Data Released by B3 Exchange
Description: Download and parse public files released by B3 and convert them
into useful formats and data structures common to data analysis
practitioners.
Author: Wilson Freitas [aut, cre],
Marcelo Perlin [aut]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between rb3 versions 0.0.4 dated 2022-06-22 and 0.0.5 dated 2022-07-16
DESCRIPTION | 6 +-- MD5 | 48 ++++++++++++------------- NEWS.md | 9 ++++ R/download-data.R | 10 ++++- R/marketdata.R | 8 ++-- R/scraper-futures.R | 4 +- R/scraper-indexes.R | 18 +++++---- R/scraper-yc.R | 6 +-- R/util.R | 10 ++++- inst/doc/Fetching-historical-future-rates.R | 6 +-- inst/doc/Fetching-historical-future-rates.Rmd | 6 +-- inst/doc/Fetching-historical-future-rates.html | 10 ++--- inst/doc/Fetching-historical-yield-curve.html | 6 +-- man/cachedir.Rd | 6 +++ man/clearcache.Rd | 2 + man/read_marketdata.Rd | 3 - tests/testthat/helper-help.R | 12 +++++- tests/testthat/test-PUWEB.R | 1 tests/testthat/test-bd_arbit.R | 1 tests/testthat/test-bdin.R | 1 tests/testthat/test-contrcad.R | 1 tests/testthat/test-convert_to.R | 2 + tests/testthat/test-indic.R | 1 tests/testthat/test-readers.R | 7 +++ vignettes/Fetching-historical-future-rates.Rmd | 6 +-- 25 files changed, 123 insertions(+), 67 deletions(-)
Title: Methods for Joint Dimension Reduction and Clustering
Description: A class of methods that combine dimension reduction and clustering of continuous, categorical or mixed-type data (Markos, Iodice D'Enza and van de Velden 2019; <DOI:10.18637/jss.v091.i10>). For continuous data, the package contains implementations of factorial K-means (Vichi and Kiers 2001; <DOI:10.1016/S0167-9473(00)00064-5>) and reduced K-means (De Soete and Carroll 1994; <DOI:10.1007/978-3-642-51175-2_24>); both methods that combine principal component analysis with K-means clustering. For categorical data, the package provides MCA K-means (Hwang, Dillon and Takane 2006; <DOI:10.1007/s11336-004-1173-x>), i-FCB (Iodice D'Enza and Palumbo 2013, <DOI:10.1007/s00180-012-0329-x>) and Cluster Correspondence Analysis (van de Velden, Iodice D'Enza and Palumbo 2017; <DOI:10.1007/s11336-016-9514-0>), which combine multiple correspondence analysis with K-means. For mixed-type data, it provides mixed Reduced K-means and mixed Factorial K-means (van de Velden, Iodice D'Enza and Markos 2019; <DOI:10.1002/wics.1456>), which combine PCA for mixed-type data with K-means.
Author: Angelos Markos [aut, cre], Alfonso Iodice D'Enza [aut], Michel van de Velden [aut]
Maintainer: Angelos Markos <amarkos@gmail.com>
Diff between clustrd versions 1.3.9 dated 2021-11-26 and 1.4.0 dated 2022-07-16
DESCRIPTION | 8 +- MD5 | 12 ++-- R/cluspca.R | 140 ++++++++++++++++++++++++++++++++------------------ R/cluspcamix.R | 147 +++++++++++++++++++++++++++++++++++------------------ R/clusval.R | 3 - R/plot.tuneclus.R | 6 +- R/print.tuneclus.R | 2 7 files changed, 204 insertions(+), 114 deletions(-)
Title: A Graphical EDA Tool
Description: An automated graphical exploratory data analysis (EDA) tool that introduces:
a.) wideplot graphics for exploring the structure of a dataset through a grid of variables
and graphic types.
b.) longplot graphics, which present the entire catalog of available graphics for representing
a particular variable using a grid of graphic types and variations on these types.
c.) plotup function, which presents a particular graphic for a specific variable of a dataset.
The plotup() function also makes it possible to obtain the code used to generate the graphic,
meaning that the user can adjust its properties as needed.
d.) matrixplot graphics that is a grid of a particular graphic showing bivariate relationships
between all pairs of variables of a certain(s) type(s) in a multivariate data set.
Author: Pere Millan-Martinez [aut, cre],
Ramon Oller Pique [ctb]
Maintainer: Pere Millan-Martinez <info@sciencegraph.org>
Diff between brinton versions 0.2.5 dated 2021-04-02 and 0.2.6 dated 2022-07-16
brinton-0.2.5/brinton/vignettes/figures/wideplot_esoph.jpeg |only brinton-0.2.6/brinton/DESCRIPTION | 14 brinton-0.2.6/brinton/MD5 | 76 +-- brinton-0.2.6/brinton/R/05_aux_functions.R | 9 brinton-0.2.6/brinton/R/20_basic_plots.R | 14 brinton-0.2.6/brinton/R/40_outputs.R | 29 + brinton-0.2.6/brinton/R/50_longplot.R | 31 - brinton-0.2.6/brinton/R/70_plotup.R | 177 +++++-- brinton-0.2.6/brinton/R/80_matrixplot.R | 148 +++++- brinton-0.2.6/brinton/README.md | 48 + brinton-0.2.6/brinton/build/vignette.rds |binary brinton-0.2.6/brinton/inst/doc/brinton.html | 293 +++++++----- brinton-0.2.6/brinton/inst/doc/specimen.html | 119 +--- brinton-0.2.6/brinton/vignettes/figures/2datetime_02-1.png |binary brinton-0.2.6/brinton/vignettes/figures/2factor_02-1.png |binary brinton-0.2.6/brinton/vignettes/figures/2factor_04-1.png |binary brinton-0.2.6/brinton/vignettes/figures/2ordered_02-1.png |binary brinton-0.2.6/brinton/vignettes/figures/2ordered_04-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_01-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_02-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_03-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_04-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_05-1.png |binary brinton-0.2.6/brinton/vignettes/figures/date-num_06-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-num_10-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-num_11-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-num_12-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-num_13-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-ord_03-1.png |binary brinton-0.2.6/brinton/vignettes/figures/fac-ord_05-1.png |binary brinton-0.2.6/brinton/vignettes/figures/num-ord_10-1.png |binary brinton-0.2.6/brinton/vignettes/figures/num-ord_11-1.png |binary brinton-0.2.6/brinton/vignettes/figures/num-ord_12-1.png |binary brinton-0.2.6/brinton/vignettes/figures/num-ord_13-1.png |binary brinton-0.2.6/brinton/vignettes/figures/readme_01s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_02s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_03s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_04s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_05s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_06s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_07s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_08s.png |only brinton-0.2.6/brinton/vignettes/figures/readme_09s.png |only brinton-0.2.6/brinton/vignettes/figures/wideplot_esoph.png |binary 44 files changed, 649 insertions(+), 309 deletions(-)
Title: Tools to Study Bone Compactness
Description: Bone Profiler is a scientific method and a software used to model
bone section for paleontological and ecological studies. See Girondot and Laurin
(2003) <https://www.researchgate.net/publication/280021178_Bone_profiler_A_tool_to_quantify_model_and_statistically_compare_bone-section_compactness_profiles>
and Gônet, Laurin and Girondot (2022) <https://palaeo-electronica.org/content/2022/3590-bone-section-compactness-model>.
Author: Marc Girondot <marc.girondot@gmail.com>
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between BoneProfileR versions 2.2 dated 2022-04-04 and 2.3 dated 2022-07-16
DESCRIPTION | 15 ++++++++------- MD5 | 18 +++++++++--------- NEWS | 9 ++++++++- R/BP_LnLCompactness.R | 2 +- R/BP_OpenImage.R | 2 +- R/BoneProfileR-package.R | 6 +++--- R/onAttach.R | 2 +- data/Erinaceus_europaeus.rda |binary inst/shiny/ui.R | 20 +++++++++++++++++++- man/BoneProfileR-package.Rd | 6 +++--- 10 files changed, 53 insertions(+), 27 deletions(-)
Title: Biological Geometries
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. 'biogeom' can quantify the conspecific or interspecific similarity of natural outlines, and provides information with important ecological and evolutionary implications for the growth and form of living organisms. Please see Shi et al. (2022) <doi:10.1111/nyas.14862> for details.
Author: Peijian Shi [aut, cre],
Johan Gielis [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between biogeom versions 1.0.6 dated 2022-07-03 and 1.0.7 dated 2022-07-16
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++++------- R/PE.R |only R/curvePE.R |only R/fitPE.R |only build/partial.rdb |binary man/GE.Rd | 30 +++++++++++++++--------------- man/PE.Rd |only man/TGE.Rd | 25 ++++++++++++------------- man/curveGE.Rd | 9 +++++---- man/curveNRGE.Rd | 6 +++--- man/curvePE.Rd |only man/curveovate.Rd | 5 +++-- man/fitPE.Rd |only 14 files changed, 55 insertions(+), 48 deletions(-)
Title: Variable Table for Variable Documentation
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>
Diff between vtable versions 1.3.3 dated 2021-08-05 and 1.3.4 dated 2022-07-16
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 5 R/helpers.R | 5 R/sumtable.R | 2 R/vtable.R | 19 - build/vignette.rds |binary inst/doc/dftotable.html | 318 +++++++++++++++-- inst/doc/labeltable.html | 499 ++++++++++++++++++++++++++- inst/doc/sumtable.html | 781 +++++++++++++++++++++++++++++++++++++++---- inst/doc/vtable.html | 213 +++++++++++ inst/doc/vtablefunction.html | 722 +++++++++++++++++++++++++++++++++++---- inst/doc/vtablehelpers.html | 336 ++++++++++++++++-- 13 files changed, 2673 insertions(+), 259 deletions(-)
Title: A Zero Dependency 'SVG' Icon Library for 'Shiny'
Description: An implementation of the 'Heroicons' icon library for 'shiny'
applications and other 'R' web-based projects. You can search, render,
and customize icons without 'CSS' or 'JavaScript' dependencies.
Author: David Ruvolo [aut, cre] ,
Adam Wathan [ctb, cph] ,
Steve Schoger [ctb, cph]
Maintainer: David Ruvolo <dcruvolo@gmail.com>
Diff between rheroicons versions 0.3.2 dated 2021-04-06 and 0.4.0 dated 2022-07-16
DESCRIPTION | 10 - MD5 | 18 - NEWS.md | 5 R/find_icon.R | 2 R/launch_gallery.R | 504 +++++++++++++++++++++++++---------------------------- R/rheroicon.R | 46 ++-- R/sysdata.rda |binary R/utils.R | 38 +-- README.md | 6 man/rheroicon.Rd | 2 10 files changed, 303 insertions(+), 328 deletions(-)
Title: Analyze and Create Elegant Directed Acyclic Graphs
Description: Tidy, analyze, and plot directed acyclic graphs (DAGs).
'ggdag' is built on top of 'dagitty', an R package that uses the
'DAGitty' web tool (<http://dagitty.net>) for creating and analyzing
DAGs. 'ggdag' makes it easy to tidy and plot 'dagitty' objects using
'ggplot2' and 'ggraph', as well as common analytic and graphical
functions, such as determining adjustment sets and node relationships.
Author: Malcolm Barrett [aut, cre]
Maintainer: Malcolm Barrett <malcolmbarrett@gmail.com>
Diff between ggdag versions 0.2.4 dated 2021-10-10 and 0.2.5 dated 2022-07-16
DESCRIPTION | 8 MD5 | 109 - NAMESPACE | 1 NEWS.md | 6 R/adjustment_sets.R | 66 - R/paths.R | 33 R/tidy_dag.R | 2 README.md | 59 - build/vignette.rds |binary inst/doc/bias-structures.html | 433 ++++++- inst/doc/intro-to-dags.Rmd | 4 inst/doc/intro-to-dags.html | 463 +++++++- inst/doc/intro-to-ggdag.html | 415 ++++++- man/figures/ggdag-1.png |binary man/figures/ggdag-2.png |binary man/figures/ggdag_geoms-1.png |binary man/paths.Rd | 25 tests/testthat/_snaps/adjustment_sets/ggdag-adjustment-set-renders-with-low-width.svg |only tests/testthat/_snaps/adjustment_sets/ggdag-adjustment-set-renders.svg | 406 +++---- tests/testthat/_snaps/canonical/ggdag-canonical-expands.svg | 78 - tests/testthat/_snaps/colliders/ggdag-collider-highlights-m.svg | 74 - tests/testthat/_snaps/drelationship/ggdag-dconnected-d-separates-x-and-y.svg | 74 - tests/testthat/_snaps/drelationship/ggdag-drelationship-d-connects-x-and-y.svg | 76 - tests/testthat/_snaps/drelationship/ggdag-drelationship-d-connects-xy-no-collider.svg | 74 - tests/testthat/_snaps/drelationship/ggdag-drelationship-d-separates-x-and-y.svg | 74 - tests/testthat/_snaps/drelationship/ggdag-dseparated-d-separates-x-and-y.svg | 74 - tests/testthat/_snaps/equivalence/ggdag-equivalent-class-plots-all-reversible-edges.svg | 68 - tests/testthat/_snaps/equivalence/ggdag-equivalent-class-plots-labels.svg | 564 +++++----- tests/testthat/_snaps/equivalence/ggdag-equivalent-class-plots-no-reversible-edges.svg | 114 +- tests/testthat/_snaps/equivalence/ggdag-equivalent-dags-plots-6-equivalent-dags.svg | 322 ++--- tests/testthat/_snaps/equivalence/ggdag-equivalent-dags-plots-no-equivalent-dags.svg | 114 +- tests/testthat/_snaps/exogenous/ggdag-exogenous-identifies-v-w1-w2-as-exogenous.svg | 114 +- tests/testthat/_snaps/geom_dag/geom-dag-edges-arc-is-arcy.svg | 132 +- tests/testthat/_snaps/geom_dag/geom-dag-edges-diagonal-is-arcy.svg | 130 +- tests/testthat/_snaps/geom_dag/geom-dag-edges-fan-is-fany.svg | 130 +- tests/testthat/_snaps/geom_dag/geom-dag-edges-link-is-straight.svg | 130 +- tests/testthat/_snaps/geom_dag/geom-dag-label-repel-repels-labels.svg | 86 - tests/testthat/_snaps/geom_dag/geom-dag-text-repel-repels-names.svg | 74 - tests/testthat/_snaps/ggdag/ggdag-classic-plots-basic-dag-classically.svg | 110 + tests/testthat/_snaps/ggdag/ggdag-plots-basic-dag.svg | 114 +- tests/testthat/_snaps/instrumental/ggdag-instrumental-identifies-i-and-i2-as-instrumental.svg | 124 +- tests/testthat/_snaps/paths/ggdag-paths-draws-2-open-paths.svg | 4 tests/testthat/_snaps/quick_plots/ggdag-collider-triangle-is-triangle-too.svg | 4 tests/testthat/_snaps/quick_plots/ggdag-confounder-triangle-is-triangle.svg | 4 tests/testthat/_snaps/relations/ggdag-ancestors-identifies-v-w1-and-z1.svg | 114 +- tests/testthat/_snaps/relations/ggdag-children-identifies-y-x-and-z1.svg | 114 +- tests/testthat/_snaps/relations/ggdag-descendants-identifies-y-x-and-z1.svg | 128 +- tests/testthat/_snaps/relations/ggdag-parents-identifies-z2-x-w1-and-w2.svg | 114 +- tests/testthat/_snaps/status/ggdag-status-x-as-exposure-y-as-outcome-and-l-as-latent.svg | 74 - tests/testthat/_snaps/themes/theme-dag-gray-grid.svg | 102 - tests/testthat/_snaps/themes/theme-dag-gray.svg | 102 - tests/testthat/_snaps/themes/theme-dag-grid.svg | 102 - tests/testthat/_snaps/themes/theme-dag.svg | 74 - tests/testthat/test-adjustment_sets.R | 9 tests/testthat/test-tidy_dag.R | 14 vignettes/intro-to-dags.Rmd | 4 56 files changed, 3443 insertions(+), 2400 deletions(-)
Title: Custom 'Bootstrap' 'Sass' Themes for 'shiny' and 'rmarkdown'
Description: Simplifies custom 'CSS' styling of both 'shiny' and 'rmarkdown' via 'Bootstrap' 'Sass'. Supports both 'Bootstrap' 3 and 4 as well as their various 'Bootswatch' themes. An interactive widget is also provided for previewing themes in real time.
Author: Carson Sievert [aut, cre] ,
Joe Cheng [aut],
RStudio [cph],
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Javi Aguilar [ctb, cph] ,
Thomas Park [ctb, cph] ,
PayPal [ctb, cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between bslib versions 0.3.1 dated 2021-10-06 and 0.4.0 dated 2022-07-16
bslib-0.3.1/bslib/inst/lib/bsw5/dist/cosmo/build.scss |only bslib-0.3.1/bslib/inst/yarn.lock |only bslib-0.4.0/bslib/DESCRIPTION | 22 bslib-0.4.0/bslib/MD5 | 280 +++++----- bslib-0.4.0/bslib/NEWS.md | 22 bslib-0.4.0/bslib/R/bs-current-theme.R | 7 bslib-0.4.0/bslib/R/bs-dependencies.R | 58 +- bslib-0.4.0/bslib/R/bs-global.R | 2 bslib-0.4.0/bslib/R/bs-theme-layers.R | 2 bslib-0.4.0/bslib/R/bs-theme-preview.R | 8 bslib-0.4.0/bslib/R/bs-theme.R | 106 --- bslib-0.4.0/bslib/R/navs-legacy.R | 8 bslib-0.4.0/bslib/R/onLoad.R | 24 bslib-0.4.0/bslib/R/staticimports.R |only bslib-0.4.0/bslib/R/sysdata.rda |binary bslib-0.4.0/bslib/R/utils.R | 54 - bslib-0.4.0/bslib/R/version-default.R | 2 bslib-0.4.0/bslib/R/versions.R | 2 bslib-0.4.0/bslib/README.md | 12 bslib-0.4.0/bslib/inst/bs3compat/_defaults.scss | 9 bslib-0.4.0/bslib/inst/bs3compat/_navbar_compat.scss | 26 bslib-0.4.0/bslib/inst/css-precompiled/3/bootstrap.min.css | 2 bslib-0.4.0/bslib/inst/css-precompiled/4/bootstrap.min.css | 2 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bslib-0.4.0/bslib/inst/lib/bs5/scss/_variables.scss | 48 + bslib-0.4.0/bslib/inst/lib/bs5/scss/bootstrap-grid.scss | 4 bslib-0.4.0/bslib/inst/lib/bs5/scss/bootstrap-reboot.scss | 6 bslib-0.4.0/bslib/inst/lib/bs5/scss/bootstrap-utilities.scss | 2 bslib-0.4.0/bslib/inst/lib/bs5/scss/bootstrap.scss | 2 bslib-0.4.0/bslib/inst/lib/bs5/scss/forms/_form-check.scss | 4 bslib-0.4.0/bslib/inst/lib/bs5/scss/forms/_form-select.scss | 2 bslib-0.4.0/bslib/inst/lib/bs5/scss/mixins/_grid.scss | 7 bslib-0.4.0/bslib/inst/lib/bs5/scss/mixins/_visually-hidden.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw4/dist/darkly/_variables.scss | 8 bslib-0.4.0/bslib/inst/lib/bsw4/dist/sandstone/_variables.scss | 5 bslib-0.4.0/bslib/inst/lib/bsw4/dist/slate/_variables.scss | 3 bslib-0.4.0/bslib/inst/lib/bsw4/dist/spacelab/_bootswatch.scss | 4 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cerulean/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cerulean/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cosmo/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cosmo/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cyborg/_bootswatch.scss | 4 bslib-0.4.0/bslib/inst/lib/bsw5/dist/cyborg/_variables.scss | 3 bslib-0.4.0/bslib/inst/lib/bsw5/dist/darkly/_bootswatch.scss | 16 bslib-0.4.0/bslib/inst/lib/bsw5/dist/darkly/_variables.scss | 101 +-- bslib-0.4.0/bslib/inst/lib/bsw5/dist/flatly/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/flatly/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/journal/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/journal/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/litera/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/litera/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/lumen/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/lumen/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/lux/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/lux/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/materia/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/materia/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/minty/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/minty/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/morph/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/morph/_variables.scss | 4 bslib-0.4.0/bslib/inst/lib/bsw5/dist/pulse/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/pulse/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/quartz/_bootswatch.scss | 19 bslib-0.4.0/bslib/inst/lib/bsw5/dist/quartz/_variables.scss | 9 bslib-0.4.0/bslib/inst/lib/bsw5/dist/sandstone/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/sandstone/_variables.scss | 7 bslib-0.4.0/bslib/inst/lib/bsw5/dist/simplex/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/simplex/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/sketchy/_bootswatch.scss | 16 bslib-0.4.0/bslib/inst/lib/bsw5/dist/sketchy/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/slate/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/slate/_variables.scss | 6 bslib-0.4.0/bslib/inst/lib/bsw5/dist/solar/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/solar/_variables.scss | 4 bslib-0.4.0/bslib/inst/lib/bsw5/dist/spacelab/_bootswatch.scss | 4 bslib-0.4.0/bslib/inst/lib/bsw5/dist/spacelab/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/superhero/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/superhero/_variables.scss | 5 bslib-0.4.0/bslib/inst/lib/bsw5/dist/united/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/united/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/vapor/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/vapor/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/yeti/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/yeti/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/zephyr/_bootswatch.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/dist/zephyr/_variables.scss | 2 bslib-0.4.0/bslib/inst/lib/bsw5/package.json | 2 bslib-0.4.0/bslib/inst/nav-spacer/nav-spacer.scss | 2 bslib-0.4.0/bslib/inst/package.json | 4 bslib-0.4.0/bslib/inst/themer-demo/app.R | 2 bslib-0.4.0/bslib/man/bs_dependency.Rd | 15 bslib-0.4.0/bslib/man/bs_global_theme.Rd | 2 bslib-0.4.0/bslib/man/bs_theme.Rd | 14 bslib-0.4.0/bslib/tests/testthat/_snaps/zzzz-bs-sass/bs5-imports | 2 bslib-0.4.0/bslib/tools/patches/006-bootswatch-cyborg-bs5.patch | 116 ++-- bslib-0.4.0/bslib/tools/patches/006-bootswatch-darkly-bs5.patch | 19 bslib-0.4.0/bslib/tools/patches/006-bootswatch-darkly.patch | 10 bslib-0.4.0/bslib/tools/patches/006-bootswatch-slate-bs5.patch | 170 +++--- bslib-0.4.0/bslib/tools/patches/006-bootswatch-slate.patch | 5 bslib-0.4.0/bslib/tools/patches/006-bootswatch-superhero-bs5.patch | 74 +- bslib-0.4.0/bslib/tools/patches/008-bootswatch-sketchy-bs5.patch | 32 - bslib-0.4.0/bslib/tools/patches/011-component-color-contrast-bs5.patch | 34 - bslib-0.4.0/bslib/tools/patches/021-add-navbar-bg-vars-bs4.patch | 8 bslib-0.4.0/bslib/tools/patches/021-add-navbar-bg-vars-bs5.patch | 8 bslib-0.4.0/bslib/tools/patches/023-shiny-forms-bs5.patch | 27 bslib-0.4.0/bslib/tools/patches/028-bsw-leverage-navbar-light-dark-bg.patch |only bslib-0.4.0/bslib/tools/patches/029-bootswatch-spacelab-navbar-bs3compat.patch |only bslib-0.4.0/bslib/tools/patches/030-bootswatch-sandstone-navbar.patch |only bslib-0.4.0/bslib/tools/yarn_install.R | 12 144 files changed, 799 insertions(+), 843 deletions(-)
Title: Manipulate and Visualize VCF Data
Description: Facilitates easy manipulation of variant call format (VCF) data.
Functions are provided to rapidly read from and write to VCF files. Once
VCF data is read into R a parser function extracts matrices of data. This
information can then be used for quality control or other purposes. Additional
functions provide visualization of genomic data. Once processing is complete
data may be written to a VCF file (*.vcf.gz). It also may be converted into
other popular R objects (e.g., genlight, DNAbin). VcfR provides a link between
VCF data and familiar R software.
Author: Brian J. Knaus [cre, aut] ,
Niklaus J. Grunwald [aut] ,
Eric C. Anderson [ctb],
David J. Winter [ctb],
Zhian N. Kamvar [ctb] ,
Javier F. Tabima [ctb]
Maintainer: Brian J. Knaus <briank.lists@gmail.com>
Diff between vcfR versions 1.12.0 dated 2020-09-01 and 1.13.0 dated 2022-07-16
DESCRIPTION | 8 - MD5 | 80 ++++++++------- NAMESPACE | 1 R/addID.R | 12 +- R/check_keys.R | 5 R/chromR_to_vcfR.R | 3 R/chromo_plot.R | 6 - R/create_chromR.R | 67 +++++++----- R/extract_gt.R | 141 ++++++++++++++------------ R/fasta_output.R | 3 R/genetic_diff.R | 6 - R/gt_to_popsum.R | 46 ++++---- R/io_vcfR.R | 60 +++++------ R/ordisample.R | 64 ++++++------ R/proc_chromR.R | 66 ++++++------ R/ranking.R | 3 R/rePOS.R | 38 +++---- R/summary_tables.R | 32 +++--- R/vcfR2DNAbin.R | 97 ++++++++++-------- R/vcfR2hapmap.R |only R/vcfR2migrate.R | 6 - R/vcfR_to_tidy_functions.R | 15 +- README.md | 15 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/converting_data.html | 199 +++++++++++++++++++++++--------------- inst/doc/intro_to_vcfR.html | 140 ++++++++++++++++++-------- inst/doc/vcf_data.html | 106 ++++++++++++++------ inst/doc/workflow.html | 46 ++++++++ man/check_keys.Rd | 2 man/ordisample.Rd | 2 man/pop_gen_sum.Rd | 4 man/summary_tables.Rd | 2 man/vcfR2hapmap.Rd |only man/vcfR_to_tidy_conversion.Rd | 2 src/Makevars | 3 src/NM2winNM.cpp | 3 src/RcppExports.cpp | 5 src/extract_gt.cpp | 3 src/freq_peak.cpp | 6 - src/read_vcfR.cpp | 3 src/vcfRCommon.cpp | 3 tests/testthat/test_vcfR2hapmap.R |only 43 files changed, 786 insertions(+), 517 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.32.2 dated 2021-12-03 and 0.32.3 dated 2022-07-16
sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.RData |only sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdb |only sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdx |only sdcTable-0.32.3/sdcTable/DESCRIPTION | 17 sdcTable-0.32.3/sdcTable/MD5 | 49 sdcTable-0.32.3/sdcTable/NAMESPACE | 2 sdcTable-0.32.3/sdcTable/R/0_imports.R | 2 sdcTable-0.32.3/sdcTable/R/createArgusInput.R | 4 sdcTable-0.32.3/sdcTable/R/getInfo.R | 4 sdcTable-0.32.3/sdcTable/R/helper_functions.r | 11 sdcTable-0.32.3/sdcTable/R/makeProblem.R | 3 sdcTable-0.32.3/sdcTable/R/protectTable.R | 27 sdcTable-0.32.3/sdcTable/R/protect_gauss.R |only sdcTable-0.32.3/sdcTable/R/runArgusBatchFile.R | 2 sdcTable-0.32.3/sdcTable/R/setInfo.R | 6 sdcTable-0.32.3/sdcTable/R/tauBatch_helpers.R | 19 sdcTable-0.32.3/sdcTable/build/vignette.rds |binary sdcTable-0.32.3/sdcTable/inst/doc/sdcTable.R | 5 sdcTable-0.32.3/sdcTable/inst/doc/sdcTable.html | 755 ++++++++-- sdcTable-0.32.3/sdcTable/inst/doc/sdcTable.rmd | 11 sdcTable-0.32.3/sdcTable/man/createArgusInput.Rd | 2 sdcTable-0.32.3/sdcTable/man/protectTable.Rd | 26 sdcTable-0.32.3/sdcTable/src/suppMultDimTable.cpp | 2 sdcTable-0.32.3/sdcTable/tests/testthat/test-protectTable.r | 16 sdcTable-0.32.3/sdcTable/vignettes/sdcTable.rmd | 11 sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/__packages | 1 sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.RData |only sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.rdb |only sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.rdx |only 29 files changed, 773 insertions(+), 202 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] ,
Jay Hesselberth [aut] ,
Maelle Salmon [aut] ,
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 2.0.5 dated 2022-06-23 and 2.0.6 dated 2022-07-16
DESCRIPTION | 12 ++-- MD5 | 66 ++++++++++++------------- NAMESPACE | 1 NEWS.md | 16 +++++- R/build-articles.R | 12 ++-- R/build-reference-index.R | 6 +- R/build.R | 9 +-- R/figure.R | 2 R/highlight.R | 3 - R/preview.R | 12 ++++ R/render.R | 3 - R/rmarkdown.R | 3 - R/test.R | 8 +-- R/topics.R | 8 +-- R/utils-yaml.R | 2 R/utils.R | 6 +- README.md | 2 build/pkgdown.pdf |binary inst/doc/customise.Rmd | 4 - inst/doc/customise.html | 4 - inst/doc/pkgdown.Rmd | 2 inst/doc/pkgdown.html | 4 - man/build_articles.Rd | 2 man/fig_settings.Rd | 2 man/preview_page.Rd |only man/test-crayon.Rd | 8 +-- tests/testthat/_snaps/build-reference-index.md | 3 - tests/testthat/_snaps/check.md | 3 - tests/testthat/assets/site-empty/vignettes |only tests/testthat/assets/vignette-with-crayon.Rmd | 2 tests/testthat/test-build-articles.R | 15 +++++ tests/testthat/test-topics.R | 20 ++++++- vignettes/customise.Rmd | 4 - vignettes/pkgdown.Rmd | 2 vignettes/test/rendering.Rmd | 10 +-- 35 files changed, 160 insertions(+), 96 deletions(-)
Title: Set 'RStudio' Preferences
Description: As of 'RStudio' v1.3, the preferences in the Global Options
dialog (and a number of other preferences that aren’t) are now saved
in simple, plain-text JSON files. This package provides an interface
for working with these 'RStudio' JSON preference files to easily make
modifications without using the point-and-click option menus. This is
particularly helpful when working on teams to ensure a unified
experience across machines and utilizing settings for best practices.
Author: Daniel D. Sjoberg [aut, cre, cph]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between rstudio.prefs versions 0.1.8 dated 2021-11-15 and 0.1.9 dated 2022-07-16
DESCRIPTION | 8 MD5 | 36 +- NEWS.md | 8 R/add_ins.R | 2 R/fetch_rstudio_prefs.R | 110 ++++---- R/pretty.R | 5 R/rstudio.prefs-package.R | 28 +- R/sysdata.rda |binary R/use_rstudio_keyboard_shortcut.R | 228 +++++++++-------- R/use_rstudio_prefs.R | 35 -- R/use_rstudio_secondary_repo.R | 255 +++++++++----------- R/utils.R | 6 man/repo_string_as_named_list.Rd | 56 ++-- man/use_rstudio_prefs.Rd | 10 man/use_rstudio_secondary_repo.Rd | 10 tests/testthat.R | 8 tests/testthat/test-pretty_print_updates.R | 12 tests/testthat/test-repo_string_as_named_list.R | 24 - tests/testthat/test-use_rstudio_keyboard_shortcut.R | 36 +- 19 files changed, 427 insertions(+), 450 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.0.4 dated 2022-06-22 and 1.0.5 dated 2022-07-16
DESCRIPTION | 6 MD5 | 71 NAMESPACE | 1 R/RcppExports.R | 4 R/bin_from_vol.R | 14 R/dicom_browser.R | 6 R/dicom_parser.R | 43 R/display_3D_contour.R | 19 R/display_3D_sections.R | 3 R/display_legend.R | 6 R/espadon_class.R | 40 R/espadon_hidden.R | 57 R/get_line.R | 2 R/get_plane.R | 2 R/get_value_from_ijk.R | 185 R/pal_RVV.R | 2 R/rt_indices_from_bin.R | 5 R/struct_from_bin.R | 28 R/struct_merge.R | 7 R/toy_load_patient.R | 29 R/vol_create.R | 4 R/vol_gradient.R |only R/vol_regrid.R | 76 build/espadon.pdf |15139 ++++++++++++++++++++--------------------- build/partial.rdb |binary inst/REFERENCES.bib | 3 inst/doc/espadon_overview.html | 4 man/dicom.browser.Rd | 6 man/dicom.parser.Rd | 9 man/display.legend.Rd | 5 man/espadon.class.Rd | 40 man/pal.RVV.Rd | 2 man/struct.from.bin.Rd | 11 man/vol.create.Rd | 4 man/vol.gradient.Rd |only src/RcppExports.cpp | 19 src/dicombrowser.cpp | 40 src/getvaluefromijkC.cpp |only 38 files changed, 8154 insertions(+), 7738 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>), univariate and multivariate (<doi:10.1186/s12711-022-00730-w>),
with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Author: Alencar Xavier, William Muir, David Habier, Kyle Kocak, Shizhong Xu, Katy Rainey.
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 2.0 dated 2022-02-14 and 2.1 dated 2022-07-16
bWGR-2.0/bWGR/src/mrr20220213.cpp |only bWGR-2.1/bWGR/DESCRIPTION | 14 - bWGR-2.1/bWGR/MD5 | 21 +- bWGR-2.1/bWGR/R/RcppExports.R | 342 +++++++++++++++++++----------------- bWGR-2.1/bWGR/R/mix.R | 2 bWGR-2.1/bWGR/man/bWGR.Rd | 8 bWGR-2.1/bWGR/man/mix.Rd | 3 bWGR-2.1/bWGR/man/mvr.Rd | 8 bWGR-2.1/bWGR/man/xtra.Rd | 26 ++ bWGR-2.1/bWGR/src/RcppExports.cpp | 129 +++++++++++++ bWGR-2.1/bWGR/src/eigen20220714.cpp |only bWGR-2.1/bWGR/src/emm20220213.cpp | 2 bWGR-2.1/bWGR/src/mrr20220709.cpp |only 13 files changed, 369 insertions(+), 186 deletions(-)
Title: Extras and Extensions for 'xaringan' Slides
Description: Extras and extensions for 'xaringan' slides. Navigate your
slides with tile view. Make your slides editable, live! Announce slide
changes with subtle tones. Animate slide transitions with
'animate.css'. Add tabbed panels to slides with 'panelset'. Use the
'Tachyons CSS' utility toolkit for rapid slide development. Scribble
on your slides. Add a copy button to your code chunks with
'clipboard'. Add a logo or top or bottom banner to every slide.
Broadcast slides to stay in sync with remote viewers. Include yourself
in your slides with 'webcam'. Plus a whole lot more!
Author: Garrick Aden-Buie [aut, cre] ,
Matthew T. Warkentin [aut] ,
Yotam Mann [cph] ,
Daniel Eden [cph] ,
Tachyons authors [cph],
Klaus Hartl, Fagner Brack, GitHub Contributors [cph] ,
Chris Andrejewski [cph] ,
Eric Londaits [cph] ,
Zeno Rocha [cph] ,
Nikit [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between xaringanExtra versions 0.6.0 dated 2022-06-07 and 0.7.0 dated 2022-07-16
DESCRIPTION | 6 MD5 | 22 NEWS.md | 21 R/banner.R | 4 R/share_again.R | 1 inst/editable/editable.css | 5 inst/editable/editable.js | 10 inst/jslib/fabric/fabric.js | 2439 ++++++++++++++++++++++++++-------------- inst/jslib/fabric/fabric.min.js | 2 inst/scribble/scribble.js | 12 inst/search/search.js | 306 ++--- man/use_banner.Rd | 14 12 files changed, 1823 insertions(+), 1019 deletions(-)
Title: Collection of Household Survey Packages Conducted by IBGE
Description: Provides access to packages developed for downloading, reading and analyzing microdata
from household surveys conducted by Brazilian Institute of Geography and Statistics - IBGE.
More information can be obtained from the official website <https://www.ibge.gov.br/>.
Author: Gabriel Assuncao [aut, cre],
Luna Hidalgo [aut],
Douglas Braga [ctb]
Maintainer: Gabriel Assuncao <pacotesipd@ibge.gov.br>
Diff between SIPDIBGE versions 0.1.6 dated 2021-11-30 and 0.1.7 dated 2022-07-16
DESCRIPTION | 10 +++++----- MD5 | 30 +++++++++++++++--------------- NAMESPACE | 1 - NEWS.md | 10 ++++++---- R/sipd_conflicts.R | 14 ++++++-------- R/sipd_deps.R | 12 +++++------- R/sipd_logo.R | 18 ++++++++---------- R/sipd_packages.R | 12 +++++------- R/sipd_sitrep.R | 28 +++++++++++++--------------- R/sipd_update.R | 14 ++++++-------- man/sipd_conflicts.Rd | 4 +--- man/sipd_deps.Rd | 4 +--- man/sipd_logo.Rd | 4 +--- man/sipd_packages.Rd | 4 +--- man/sipd_sitrep.Rd | 4 +--- man/sipd_update.Rd | 4 +--- 16 files changed, 75 insertions(+), 98 deletions(-)
Title: The Interpolate, Truncate, Project (ITP) Root-Finding Algorithm
Description: Implements the Interpolate, Truncate, Project (ITP) root-finding
algorithm developed by Oliveira and Takahashi (2021) <doi:10.1145/3423597>.
The user provides the function, from the real numbers to the real numbers,
and an interval with the property that the values of the function at its
endpoints have different signs. If the function is continuous over this
interval then the ITP method estimates the value at which the function is
equal to zero. If the function is discontinuous then a point of
discontinuity at which the function changes sign may be found.
The function can be supplied using either an R function or an external
pointer to a C++ function. Tuning parameters of the ITP algorithm can be
set by the user. Default values are set based on arguments in Oliveira and
Takahashi (2021).
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between itp versions 1.1.0 dated 2022-07-02 and 1.2.0 dated 2022-07-16
DESCRIPTION | 10 ++-- MD5 | 48 ++++++++++++---------- NAMESPACE | 1 NEWS.md | 42 +++++++++++-------- R/RcppExports.R | 63 +++++++++++++++++++++++++++++ R/itp-package.R | 4 - R/itp.R | 64 ++++++++++++++++++----------- README.md | 17 +++++++ build/partial.rdb |binary inst/doc/itp-vignette.R | 5 ++ inst/doc/itp-vignette.Rmd | 14 +++++- inst/doc/itp-vignette.html | 33 ++++++++++----- inst/include/itp_RcppExports.h | 42 +++++++++++++++++++ man/itp-internal.Rd | 7 ++- man/itp-package.Rd | 5 ++ man/itp.Rd | 27 ++++++------ man/itp_c.Rd |only src/RcppExports.cpp | 82 ++++++++++++++++++++++++++++++++++++++ src/itp.cpp | 13 +++--- src/itp_c.cpp |only src/user_fns.cpp | 7 +++ tests/testthat/test-R-vs-Cpp.R | 2 tests/testthat/test-continuous.R | 35 ++++++++++++++++ tests/testthat/test-errors-itpC.R |only tests/testthat/test-errors.R | 7 ++- tests/testthat/test-itp-vs-itpC.R |only vignettes/itp-vignette.Rmd | 14 +++++- 27 files changed, 431 insertions(+), 111 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] ,
Thomas Petzoldt [aut, cre] ,
R. Woodrow Setzer [aut] ,
Peter N. Brown [ctb] ,
George D. Byrne [ctb] ,
Ernst Hairer [ctb] ,
Alan C. Hindmarsh [ctb] ,
Cleve Moler [ctb] ,
Linda R. Petzold [ctb] ,
Youcef Saad [ctb] ,
Clement W. [...truncated...]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.32 dated 2022-04-14 and 1.33 dated 2022-07-16
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS | 15 ++++++++++----- build/partial.rdb |binary build/vignette.rds |binary data/ccl4data.rda |binary inst/doc/compiledCode.pdf |binary inst/doc/deSolve.pdf |binary src/rk_util.c | 6 ++++++ 9 files changed, 28 insertions(+), 17 deletions(-)
Title: World Development Indicators and Other World Bank Data
Description: Search and download data from over 40 databases hosted by the World Bank, including the World Development Indicators ('WDI'), International Debt Statistics, Doing Business, Human Capital Index, and Sub-national Poverty indicators.
Author: Vincent Arel-Bundock [aut, cre]
,
Etienne Bacher [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between WDI versions 2.7.6 dated 2022-02-25 and 2.7.7 dated 2022-07-16
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ data/WDI_data.RData |binary 4 files changed, 10 insertions(+), 6 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph]
,
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.3.5 dated 2022-03-28 and 1.3.6 dated 2022-07-16
DESCRIPTION | 16 - MD5 | 56 +++-- NEWS.md | 470 ++++++++++++++++++++++++++++--------------------- R/AAA_color_palette.R | 19 + R/Chameleon.R | 20 -- R/SupremeCourt.R | 15 + R/Townships.R | 6 R/dissplot.R | 134 +++++++------ R/ggpimage.R | 103 +++++----- R/grid_helpers.R | 3 R/pimage.R | 209 +++++++++++++-------- README.md | 222 ++++++++++++++--------- build/partial.rdb |binary build/vignette.rds |binary data/Chameleon.rda |binary data/Irish.rda |binary data/Munsingen.rda |binary data/Psych24.rda |binary data/SupremeCourt.rda |binary data/Townships.rda |binary data/Wood.rda |binary data/Zoo.rda |binary inst/README_files |only inst/doc/seriation.pdf |binary man/Chameleon.Rd | 17 - man/SupremeCourt.Rd | 19 + man/Townships.Rd | 5 man/dissplot.Rd | 116 ++++++------ man/pimage.Rd | 195 +++++++++++++------- 29 files changed, 945 insertions(+), 680 deletions(-)
Title: Syntactically Awesome Style Sheets ('Sass')
Description: An 'SCSS' compiler, powered by the 'LibSass' library. With this,
R developers can use variables, inheritance, and functions to generate
dynamic style sheets. The package uses the 'Sass CSS' extension language,
which is stable, powerful, and CSS compatible.
Author: Joe Cheng [aut],
Timothy Mastny [aut],
Richard Iannone [aut] ,
Barret Schloerke [aut] ,
Carson Sievert [aut, cre] ,
Christophe Dervieux [ctb] ,
RStudio [cph, fnd],
Sass Open Source Foundation [ctb, cph] ,
Greter Marcel [ctb, cph] ,
Mifsud Michael [ct [...truncated...]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between sass versions 0.4.1 dated 2022-03-25 and 0.4.2 dated 2022-07-16
sass-0.4.1/sass/src/init.c |only sass-0.4.2/sass/DESCRIPTION | 8 - sass-0.4.2/sass/MD5 | 36 +++---- sass-0.4.2/sass/NEWS.md | 9 + sass-0.4.2/sass/R/as_sass.R | 4 sass-0.4.2/sass/R/fonts.R | 2 sass-0.4.2/sass/R/layers.R | 11 +- sass-0.4.2/sass/README.md | 2 sass-0.4.2/sass/build/vignette.rds |binary sass-0.4.2/sass/inst/doc/sass.Rmd | 18 +-- sass-0.4.2/sass/inst/doc/sass.html | 20 ++-- sass-0.4.2/sass/man/FileCache.Rd | 96 ++++++++++----------- sass-0.4.2/sass/man/as_sass.Rd | 2 sass-0.4.2/sass/man/font_face.Rd | 18 ++- sass-0.4.2/sass/man/sass_import.Rd | 2 sass-0.4.2/sass/src/compile.h | 8 + sass-0.4.2/sass/src/init.cpp |only sass-0.4.2/sass/tests/testthat/test-cache.R | 13 +- sass-0.4.2/sass/tests/testthat/test-font-objects.R | 8 + sass-0.4.2/sass/vignettes/sass.Rmd | 18 +-- 20 files changed, 155 insertions(+), 120 deletions(-)
Title: R to Symbolic Data Analysis
Description: Symbolic Data Analysis (SDA) was proposed by professor Edwin Diday in 1987, the main purpose of SDA is to substitute the set of rows (cases) in the data table for a concept (second order statistical unit). This package implements, to the symbolic case, certain techniques of automatic classification, as well as some linear models.
Author: Oldemar Rodriguez [aut, cre],
Jose Emmanuel Chacon [cph],
Carlos Aguero [cph],
Jorge Arce [cph]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between RSDA versions 3.0.12 dated 2022-07-04 and 3.0.13 dated 2022-07-16
DESCRIPTION | 10 MD5 | 28 NAMESPACE | 10 R/RSDA.R | 7 R/sds_to_rsda.R | 690 +++++++++--------- R/sym_interval_tsne.R |only R/sym_interval_umap.R |only inst/doc/introduction.R | 60 + inst/doc/introduction.Rmd | 83 ++ inst/doc/introduction.html | 607 ++++++++++++++++ man/RSDA.Rd | 4 man/SDS.to.RSDA.Rd | 4 man/plot.sym_tsne.Rd |only man/plot.sym_umap.Rd |only man/sym.tsne.Rd |only man/sym.umap.Rd |only vignettes/hani3101.sds | 1654 ++++++++++++++++++++++----------------------- vignettes/introduction.Rmd | 83 ++ 18 files changed, 2000 insertions(+), 1240 deletions(-)
Title: R Bindings for Calling the 'Earth Engine' API
Description: Earth Engine <https://earthengine.google.com/> client library for R. All
of the 'Earth Engine' API classes, modules, and functions are made available. Additional
functions implemented include importing (exporting) of Earth Engine spatial objects,
extraction of time series, interactive map display, assets management interface,
and metadata display. See <https://r-spatial.github.io/rgee/> for further details.
Author: Cesar Aybar [aut, cre] ,
Wu Qiusheng [ctb] ,
Lesly Bautista [ctb] ,
Roy Yali [ctb] ,
Antony Barja [ctb] ,
Kevin Ushey [ctb],
Jeroen Ooms [ctb] ,
Tim Appelhans [ctb],
JJ Allaire [ctb],
Yuan Tang [ctb],
Samapriya Roy [ctb],
MariaElena Adauto [ctb] ,
Ga [...truncated...]
Maintainer: Cesar Aybar <csaybar@gmail.com>
Diff between rgee versions 1.1.3 dated 2022-03-16 and 1.1.4 dated 2022-07-16
DESCRIPTION | 6 MD5 | 45 +++--- NAMESPACE | 1 NEWS.md | 7 R/R6Map.R | 24 +-- R/ee_Initialize.R | 132 ++++++++++++++---- R/ee_check.R | 6 R/ee_extract.R | 10 + R/ee_get.R | 13 + R/ee_help.R | 2 R/ee_imagecollection.R | 5 R/ee_version.R | 2 inst/dataset.json | 2 inst/doc/rgee01.html | 159 +++++++++++++++------ inst/doc/rgee02.html | 77 ++++++++-- inst/doc/rgee03.html | 349 +++++++++++++++++++++++++++++++++++++----------- inst/doc/rgee04.html | 80 ++++++++--- inst/doc/rgee05.html | 169 ++++++++++++++++++----- inst/doc/rgee06.html | 65 ++++++-- inst/python/ee_utils.py | 15 +- man/Map.Rd | 6 man/R6Map.Rd | 10 - man/ee_Authenticate.Rd |only man/ee_Initialize.Rd | 25 ++- 24 files changed, 914 insertions(+), 296 deletions(-)
Title: Variable Selection in Partial Least Squares
Description: Interfaces and methods for variable selection in Partial Least
Squares. The methods include filter methods, wrapper methods and embedded
methods. Both regression and classification is supported.
Author: Kristian Hovde Liland [aut, cre]
,
Tahir Mehmood [ctb],
Solve Sæboe [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between plsVarSel versions 0.9.7 dated 2022-01-04 and 0.9.8 dated 2022-07-16
DESCRIPTION | 10 MD5 | 86 +- NAMESPACE | 145 ++-- NEWS | 52 - R/BVE.R | 258 +++---- R/GA.R | 196 ++--- R/IPW.R | 302 ++++----- R/REP.R | 308 ++++----- R/SPA.R | 310 ++++----- R/T2.R | 120 +-- R/UVE.R | 178 ++--- R/WVC.R | 206 +++--- R/covSel.R |only R/filters.R | 1232 ++++++++++++++++++------------------- R/lda_from_pls.R | 256 +++---- R/mvrV.R | 1580 ++++++++++++++++++++++++------------------------ R/plsVarSel.R | 54 - R/shaving.R | 560 ++++++++--------- R/stpls.R | 412 ++++++------ R/trunc.R | 1220 ++++++++++++++++++------------------- R/utilities.R | 570 ++++++++--------- README.md | 4 inst/CITATION | 30 man/T2_pls.Rd | 84 +- man/VIP.Rd | 182 ++--- man/WVC_pls.Rd | 76 +- man/bve_pls.Rd | 106 +-- man/covSel.Rd |only man/filterPLSR.Rd | 188 ++--- man/ga_pls.Rd | 128 +-- man/ipw_pls.Rd | 142 ++-- man/lda_from_pls.Rd | 82 +- man/lda_from_pls_cv.Rd | 90 +- man/mcuve_pls.Rd | 104 +-- man/mvrV.Rd | 116 +-- man/myImagePlot.Rd | 74 +- man/plsVarSel.Rd | 52 - man/rep_pls.Rd | 112 +-- man/setDA.Rd | 60 - man/shaving.Rd | 220 +++--- man/simulate_classes.Rd | 106 +-- man/spa_pls.Rd | 102 +-- man/stpls.Rd | 90 +- man/summary.mvrV.Rd | 62 - man/truncation.Rd | 118 +-- 45 files changed, 5195 insertions(+), 5188 deletions(-)
Title: Partial Least Squares and Principal Component Regression
Description: Multivariate regression methods
Partial Least Squares Regression (PLSR), Principal Component
Regression (PCR) and Canonical Powered Partial Least Squares (CPPLS).
Author: Kristian Hovde Liland [aut, cre],
Bjoern-Helge Mevik [aut],
Ron Wehrens [aut],
Paul Hiemstra [ctb]
Maintainer: Kristian Hovde Liland <kristian.liland@nmbu.no>
Diff between pls versions 2.8-0 dated 2021-09-03 and 2.8-1 dated 2022-07-16
DESCRIPTION | 12 MD5 | 102 - NAMESPACE | 1 R/cppls.fit.R | 1018 +++++------ R/crossval.R | 1086 +++++------ R/cvsegments.R | 422 ++-- R/data.R | 190 +- R/extract.R | 840 ++++----- R/jackknife.R | 456 ++-- R/kernelpls.fit.R | 416 ++-- R/msc.R | 144 - R/mvr.R | 690 +++---- R/mvrVal.R | 680 +++---- R/mvr_wrappers.R | 82 R/ncomp.R | 300 +-- R/oscorespls.fit.R | 462 ++--- R/plots.R | 2856 +++++++++++++++---------------- R/pls-package.R | 26 R/pls.options.R | 234 +- R/predict.mvr.R | 268 +- R/simpls.fit.R | 368 +-- R/stdize.R | 218 +- R/summaries.R | 244 +- R/svdpc.fit.R | 254 +- R/vcov.R |only R/widekernelpls.fit.R | 474 ++--- build/vignette.rds |binary inst/NEWS.Rd | 867 ++++----- inst/doc/pls-manual.R | 564 +++--- inst/doc/pls-manual.Rnw | 2518 +++++++++++++-------------- inst/doc/pls-manual.pdf |binary man/mvr.Rd | 3 man/vcov.mvr.Rd |only tests/RUnit/common/create_refmodels.R | 54 tests/RUnit/common/ref_multiresp.RData |binary tests/RUnit/common/ref_singresp.RData |binary tests/RUnit/common/runit.CV.R | 356 +-- tests/RUnit/common/runit.algorithms.R | 136 - tests/RUnit/common/runit.jackknife.R | 158 - tests/RUnit/common/runit.mvrVal.R | 862 ++++----- tests/RUnit/common/runit.options.R | 110 - tests/RUnit/common/runit.predict.R | 254 +- tests/RUnit/common/utils.R | 40 tests/RUnit/import/runit.fit.R | 42 tests/RUnit/import/runit.options.R | 36 tests/RUnit/library/runit.CV.R | 226 +- tests/RUnit/library/runit.mvr_wrappers.R | 90 tests/test_import.R | 64 tests/test_library.R | 60 tests/testthat.R | 8 tests/testthat/test_basic_pls.R | 246 +- vignettes/pls-manual.Rnw | 2518 +++++++++++++-------------- vignettes/pls-manual.bib | 488 ++--- 53 files changed, 10778 insertions(+), 10765 deletions(-)
Title: Search and Query CRAN R Packages
Description: Search CRAN metadata about packages by keyword, popularity,
recent activity, package name and more. Uses the 'R-hub' search server,
see <https://r-pkg.org> and the CRAN metadata database, that
contains information about CRAN packages. Note that this is _not_
a CRAN project.
Author: Gabor Csardi [aut, cre],
Maelle Salmon [aut] ,
R Consortium [fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgsearch versions 3.1.0 dated 2022-02-16 and 3.1.1 dated 2022-07-16
DESCRIPTION | 8 MD5 | 31 - NEWS.md | 4 R/aaa-rstudio-detect.R |only R/advanced_search.R | 4 R/api.R | 6 R/crandb-public-api.R | 28 - R/errors.R | 1137 ++++++++++++++++++++++++++++++-------------- man/advanced_search.Rd | 2 man/cran_events.Rd | 2 man/cran_new.Rd | 4 man/cran_package.Rd | 2 man/cran_package_history.Rd | 2 man/cran_packages.Rd | 2 man/pkg_search.Rd | 2 man/pkg_search_addin.Rd | 6 man/pkgsearch-package.Rd | 2 17 files changed, 830 insertions(+), 412 deletions(-)
Title: Noncompartmental Analysis for Pharmacokinetic Data
Description: Conduct a noncompartmental analysis with industrial strength.
Some features are
1) Use of CDISC SDTM terms
2) Automatic or manual slope selection
3) Supporting both 'linear-up linear-down' and 'linear-up log-down' method
4) Interval(partial) AUCs with 'linear' or 'log' interpolation method
* Reference: Gabrielsson J, Weiner D. Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications. 5th ed. 2016. (ISBN:9198299107).
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between NonCompart versions 0.5.1 dated 2022-06-15 and 0.6.0 dated 2022-07-16
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++++++--- R/Interpol.R | 1 - R/gAUC.R |only R/gIntAUC.R |only R/gInterpol.R |only R/tblAUC.R |only inst/doc/NonCompart-manual.pdf |binary man/gAUC.Rd |only man/gIntAUC.Rd |only man/gInterpol.Rd |only man/tblAUC.Rd |only 12 files changed, 15 insertions(+), 8 deletions(-)
Title: Actuarial Functions and Heavy Tailed Distributions
Description: Functions and data sets for actuarial science:
modeling of loss distributions; risk theory and ruin theory;
simulation of compound models, discrete mixtures and compound
hierarchical models; credibility theory. Support for many additional
probability distributions to model insurance loss size and
frequency: 23 continuous heavy tailed distributions; the
Poisson-inverse Gaussian discrete distribution; zero-truncated and
zero-modified extensions of the standard discrete distributions.
Support for phase-type distributions commonly used to compute ruin
probabilities. Main reference: <doi:10.18637/jss.v025.i07>.
Implementation of the Feller-Pareto family of distributions:
<doi:10.18637/jss.v103.i06>.
Author: Vincent Goulet [cre, aut],
Sebastien Auclair [ctb],
Christophe Dutang [aut],
Walter Garcia-Fontes [ctb],
Nicholas Langevin [ctb],
Xavier Milhaud [ctb],
Tommy Ouellet [ctb],
Alexandre Parent [ctb],
Mathieu Pigeon [aut],
Louis-Philippe Pouliot [ctb],
J [...truncated...]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between actuar versions 3.2-2 dated 2022-03-27 and 3.3-0 dated 2022-07-16
DESCRIPTION | 12 +++++++----- MD5 | 32 ++++++++++++++++++-------------- R/bstraub.R | 6 +++--- build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 43 +++++++++++++++++++++---------------------- inst/NEWS.Rd | 13 +++++++++++++ inst/doc/actuar.pdf |binary inst/doc/coverage.pdf |binary inst/doc/credibility.pdf |binary inst/doc/distributions.pdf |binary inst/doc/modeling.pdf |binary inst/doc/risk.pdf |binary inst/doc/simulation.pdf |binary man/FellerPareto.Rd | 14 ++++++++++---- man/PhaseType.Rd | 1 + man/actuar-package.Rd |only po/R-it.po |only po/it.po |only 19 files changed, 73 insertions(+), 48 deletions(-)
Title: Starter Kit for New Projects
Description: Get started with new projects by dropping a skeleton of a new
project into a new or existing directory, initialise git repositories,
and create reproducible environments with the 'renv' package. The
package allows for dynamically named files, folders, file content, as
well as the functionality to drop individual template files into
existing projects.
Author: Daniel D. Sjoberg [aut, cre] ,
Emily Vertosick [ctb]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between starter versions 0.1.9 dated 2022-04-20 and 0.1.10 dated 2022-07-16
DESCRIPTION | 31 - MD5 | 48 + NAMESPACE | 11 NEWS.md | 10 R/create_project.R | 786 +++++++++++++++--------------- R/create_symlink.R | 39 - R/data.R |only R/starter-package.R | 15 R/sysdata.rda |binary R/use_project_file.R | 6 R/utils-keepers.R |only R/utils-mappers.R |only R/utils-safely.R |only R/utils-walkers.R |only README.md | 144 ++--- build/vignette.rds |binary data |only inst/WORDLIST | 1 inst/doc/create_project.R | 2 inst/doc/create_project.Rmd | 460 ++++++++--------- inst/doc/create_project.html | 24 inst/project_templates/analysis_template |only inst/project_templates/default_rprofile.R | 5 man/project_templates.Rd |only man/starter-package.Rd | 5 vignettes/create_project.Rmd | 460 ++++++++--------- 26 files changed, 1041 insertions(+), 1006 deletions(-)
Title: Fixed Income Models, Calculations, Data Structures and
Instruments
Description: Fixed income mathematics made easy. A rich set of functions
that helps with calculations of interest rates and fixed income.
It has objects that abstract interest rates, compounding factors, day count rules,
forward rates and term structure of interest rates.
Many interpolation methods and parametric curve models commonly used by practitioners
are implemented.
Author: Wilson Freitas [aut, cre]
Maintainer: Wilson Freitas <wilson.freitas@gmail.com>
Diff between fixedincome versions 0.0.1 dated 2022-03-17 and 0.0.2 dated 2022-07-16
fixedincome-0.0.1/fixedincome/man/rates.Rd |only fixedincome-0.0.1/fixedincome/man/toyears.Rd |only fixedincome-0.0.2/fixedincome/DESCRIPTION | 12 fixedincome-0.0.2/fixedincome/MD5 | 79 ++- fixedincome-0.0.2/fixedincome/NAMESPACE | 9 fixedincome-0.0.2/fixedincome/NEWS.md | 35 + fixedincome-0.0.2/fixedincome/R/compound-method.R | 6 fixedincome-0.0.2/fixedincome/R/compounding-class.R | 30 - fixedincome-0.0.2/fixedincome/R/daycount-class.R | 113 +++-- fixedincome-0.0.2/fixedincome/R/forwardrate-class.R | 12 fixedincome-0.0.2/fixedincome/R/hidden.R | 3 fixedincome-0.0.2/fixedincome/R/interpolation-class.R | 31 + fixedincome-0.0.2/fixedincome/R/plot.R |only fixedincome-0.0.2/fixedincome/R/spotrate-class.R | 187 ++++++++- fixedincome-0.0.2/fixedincome/R/spotratecurve-class.R | 150 ++++--- fixedincome-0.0.2/fixedincome/R/spotratecurve-interpolation-nelsonsiegel.R |only fixedincome-0.0.2/fixedincome/R/spotratecurve-interpolation.R | 87 ---- fixedincome-0.0.2/fixedincome/R/term-class.R | 81 +++- fixedincome-0.0.2/fixedincome/R/utils.R | 141 ------- fixedincome-0.0.2/fixedincome/R/zzz.R | 8 fixedincome-0.0.2/fixedincome/README.md | 198 ++++++---- fixedincome-0.0.2/fixedincome/build |only fixedincome-0.0.2/fixedincome/inst |only fixedincome-0.0.2/fixedincome/man/SpotRate-class.Rd | 133 ++++++ fixedincome-0.0.2/fixedincome/man/Term-class.Rd | 36 + fixedincome-0.0.2/fixedincome/man/compounding.Rd | 2 fixedincome-0.0.2/fixedincome/man/figures |only fixedincome-0.0.2/fixedincome/man/hidden_aliases.Rd | 3 fixedincome-0.0.2/fixedincome/man/implied_rate.Rd |only fixedincome-0.0.2/fixedincome/man/interpolate.Rd | 1 fixedincome-0.0.2/fixedincome/man/spotrate-compare-method.Rd | 43 ++ fixedincome-0.0.2/fixedincome/man/term-conversion.Rd |only fixedincome-0.0.2/fixedincome/tests/testthat/test-compounding.R | 9 fixedincome-0.0.2/fixedincome/tests/testthat/test-daycount.R | 60 ++- fixedincome-0.0.2/fixedincome/tests/testthat/test-spotrate-class.R | 14 fixedincome-0.0.2/fixedincome/tests/testthat/test-spotratecurve.R | 6 fixedincome-0.0.2/fixedincome/tests/testthat/test-term.R | 54 +- fixedincome-0.0.2/fixedincome/vignettes |only 38 files changed, 984 insertions(+), 559 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-16 1.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-05 1.0.1
2022-05-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-18 1.0.3
2021-06-14 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-07 0.2.0
2018-10-19 0.1.1
2017-08-25 0.1.0