Title: Statistical Inference in High Dimensional Regression
Description: Inference procedures in the high-dimensional setting for
(1) linear functionals in generalized linear regression ('Cai et al.' (2019) <arXiv:1904.12891>, 'Guo et al.' (2020) <arXiv:2012.07133>, 'Cai et al.' (2021)),
(2) individual treatment effects in generalized linear regression,
(3) quadratic functionals in linear regression ('Guo et al.' (2019) <arXiv:1909.01503>).
Author: Prabrisha Rakshit, Zhenyu Wang, Tony Cai, Zijian Guo
Maintainer: Zijian Guo <zijguo@stat.rutgers.edu>
Diff between SIHR versions 0.2.0 dated 2021-10-07 and 1.0.0 dated 2022-07-25
SIHR-0.2.0/SIHR/R/GLM_binary.R |only SIHR-0.2.0/SIHR/R/LF_linear.R |only SIHR-0.2.0/SIHR/R/LF_logistic.R |only SIHR-0.2.0/SIHR/R/Source_GLM.R |only SIHR-0.2.0/SIHR/R/Source_Linear.R |only SIHR-0.2.0/SIHR/build |only SIHR-0.2.0/SIHR/inst/REFERENCES.bib |only SIHR-0.2.0/SIHR/inst/doc |only SIHR-0.2.0/SIHR/man/Direction_fixedtuning.Rd |only SIHR-0.2.0/SIHR/man/Direction_searchtuning.Rd |only SIHR-0.2.0/SIHR/man/GLM_binary.Rd |only SIHR-0.2.0/SIHR/man/ITE_Logistic.Rd |only SIHR-0.2.0/SIHR/man/LF_logistic.Rd |only SIHR-0.2.0/SIHR/vignettes |only SIHR-1.0.0/SIHR/DESCRIPTION | 26 SIHR-1.0.0/SIHR/MD5 | 50 - SIHR-1.0.0/SIHR/NAMESPACE | 46 - SIHR-1.0.0/SIHR/R/ITE.R |only SIHR-1.0.0/SIHR/R/LF.R |only SIHR-1.0.0/SIHR/R/Methods.R |only SIHR-1.0.0/SIHR/R/Projection_Directions.R | 178 ++--- SIHR-1.0.0/SIHR/R/QF.R | 377 +++++------ SIHR-1.0.0/SIHR/R/check.R |only SIHR-1.0.0/SIHR/R/helpers.R |only SIHR-1.0.0/SIHR/README.md | 858 +++++++++++--------------- SIHR-1.0.0/SIHR/inst/references.bib |only SIHR-1.0.0/SIHR/man/ITE.Rd | 146 ++-- SIHR-1.0.0/SIHR/man/LF.Rd | 114 +-- SIHR-1.0.0/SIHR/man/QF.Rd | 108 +-- SIHR-1.0.0/SIHR/man/ci.ITE.Rd |only SIHR-1.0.0/SIHR/man/ci.LF.Rd |only SIHR-1.0.0/SIHR/man/ci.QF.Rd |only SIHR-1.0.0/SIHR/man/ci.Rd |only SIHR-1.0.0/SIHR/man/print.summary.ITE.Rd |only SIHR-1.0.0/SIHR/man/print.summary.LF.Rd |only SIHR-1.0.0/SIHR/man/print.summary.QF.Rd |only SIHR-1.0.0/SIHR/man/summary.ITE.Rd |only SIHR-1.0.0/SIHR/man/summary.LF.Rd |only SIHR-1.0.0/SIHR/man/summary.QF.Rd |only 39 files changed, 885 insertions(+), 1018 deletions(-)
Title: Spatial Data Analysis
Description: Methods for spatial data analysis with raster and vector data. Raster methods allow for low-level data manipulation as well as high-level global, local, zonal, and focal computation. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is very similar to the 'raster' package; but 'terra' can do more, is easier to use, and it is faster.
Author: Robert J. Hijmans [cre, aut] ,
Roger Bivand [ctb] ,
Karl Forner [ctb],
Jeroen Ooms [ctb] ,
Edzer Pebesma [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.5-34 dated 2022-06-09 and 1.6-3 dated 2022-07-25
terra-1.5-34/terra/R/gridDistance.R |only terra-1.5-34/terra/man/subset-vector.Rd |only terra-1.6-3/terra/DESCRIPTION | 11 terra-1.6-3/terra/MD5 | 417 ++++++++-------- terra-1.6-3/terra/NAMESPACE | 3 terra-1.6-3/terra/NEWS.md | 47 + terra-1.6-3/terra/R/Agenerics.R | 25 terra-1.6-3/terra/R/Arith_generics.R | 91 +-- terra-1.6-3/terra/R/RGB.R | 16 terra-1.6-3/terra/R/SpatRasterDataset.R | 20 terra-1.6-3/terra/R/SpatVectorCollection.R | 8 terra-1.6-3/terra/R/Zdeprecated.R | 17 terra-1.6-3/terra/R/aggregate.R | 74 +- terra-1.6-3/terra/R/animate.R | 2 terra-1.6-3/terra/R/app.R | 36 - terra-1.6-3/terra/R/approximate.R | 6 terra-1.6-3/terra/R/arith.R | 4 terra-1.6-3/terra/R/autocor.R | 22 terra-1.6-3/terra/R/cells.R | 24 terra-1.6-3/terra/R/clean.R | 2 terra-1.6-3/terra/R/click.R | 26 terra-1.6-3/terra/R/coerce.R | 242 +++++---- terra-1.6-3/terra/R/colors.R | 48 + terra-1.6-3/terra/R/crosstab.R | 10 terra-1.6-3/terra/R/crs.R | 47 - terra-1.6-3/terra/R/deprecated.R |only terra-1.6-3/terra/R/dimensions.R | 52 - terra-1.6-3/terra/R/distance.R | 28 - terra-1.6-3/terra/R/draw.R | 16 terra-1.6-3/terra/R/expand.R | 4 terra-1.6-3/terra/R/extent.R | 140 ++--- terra-1.6-3/terra/R/extract.R | 79 +-- terra-1.6-3/terra/R/focal.R | 12 terra-1.6-3/terra/R/gcp.R | 6 terra-1.6-3/terra/R/gdal.R | 8 terra-1.6-3/terra/R/generics.R | 421 +++++++++------- terra-1.6-3/terra/R/geom.R | 237 +++++++-- terra-1.6-3/terra/R/hist.R | 18 terra-1.6-3/terra/R/ifelse.R | 8 terra-1.6-3/terra/R/image.R | 4 terra-1.6-3/terra/R/init.R | 4 terra-1.6-3/terra/R/inset.R | 10 terra-1.6-3/terra/R/interpolate.R | 6 terra-1.6-3/terra/R/lapp.R | 38 + terra-1.6-3/terra/R/layerCor.R | 2 terra-1.6-3/terra/R/levels.R | 207 +++---- terra-1.6-3/terra/R/lines.R | 6 terra-1.6-3/terra/R/makeVRT.R | 40 - terra-1.6-3/terra/R/match.R | 5 terra-1.6-3/terra/R/math.R | 14 terra-1.6-3/terra/R/merge.R | 23 terra-1.6-3/terra/R/mergeTime.R | 26 terra-1.6-3/terra/R/messages.R | 10 terra-1.6-3/terra/R/names.R | 73 +- terra-1.6-3/terra/R/ncdf.R | 70 +- terra-1.6-3/terra/R/options.R | 24 terra-1.6-3/terra/R/pack.R | 62 +- terra-1.6-3/terra/R/plot.R | 44 - 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terra-1.6-3/terra/man/focalCpp.Rd | 4 terra-1.6-3/terra/man/freq.Rd | 3 terra-1.6-3/terra/man/geometry.Rd | 11 terra-1.6-3/terra/man/global.Rd | 2 terra-1.6-3/terra/man/gridDistance.Rd | 7 terra-1.6-3/terra/man/image.Rd | 2 terra-1.6-3/terra/man/inplace.Rd | 3 terra-1.6-3/terra/man/lapp.Rd | 17 terra-1.6-3/terra/man/mask.Rd | 4 terra-1.6-3/terra/man/merge.Rd | 1 terra-1.6-3/terra/man/names.Rd | 2 terra-1.6-3/terra/man/plet.Rd |only terra-1.6-3/terra/man/plot.Rd | 42 - terra-1.6-3/terra/man/project.Rd | 6 terra-1.6-3/terra/man/rast.Rd | 8 terra-1.6-3/terra/man/rasterize.Rd | 1 terra-1.6-3/terra/man/rectify.Rd | 2 terra-1.6-3/terra/man/resample.Rd | 6 terra-1.6-3/terra/man/sapp.Rd | 14 terra-1.6-3/terra/man/segregate.Rd | 6 terra-1.6-3/terra/man/selectHigh.Rd | 2 terra-1.6-3/terra/man/shade.Rd | 4 terra-1.6-3/terra/man/sharedPaths.Rd | 8 terra-1.6-3/terra/man/simplify.Rd | 11 terra-1.6-3/terra/man/sort.Rd |only terra-1.6-3/terra/man/subset.Rd | 56 +- terra-1.6-3/terra/man/subst.Rd | 10 terra-1.6-3/terra/man/tapp.Rd | 8 terra-1.6-3/terra/man/terra-package.Rd | 133 ++--- terra-1.6-3/terra/man/terraOptions.Rd | 2 terra-1.6-3/terra/man/terrain.Rd | 4 terra-1.6-3/terra/man/time.Rd | 31 - terra-1.6-3/terra/man/union.Rd | 6 terra-1.6-3/terra/man/unique.Rd | 8 terra-1.6-3/terra/man/vect.Rd | 2 terra-1.6-3/terra/man/voronoi.Rd | 3 terra-1.6-3/terra/man/vrt.Rd | 2 terra-1.6-3/terra/man/writeRaster.Rd | 6 terra-1.6-3/terra/man/zonal.Rd | 34 + terra-1.6-3/terra/src/NA.h | 2 terra-1.6-3/terra/src/RcppFunctions.cpp | 52 - terra-1.6-3/terra/src/RcppModule.cpp | 190 +++++-- terra-1.6-3/terra/src/arith.cpp | 62 +- terra-1.6-3/terra/src/crs.cpp | 12 terra-1.6-3/terra/src/crs.h | 17 terra-1.6-3/terra/src/date.h | 2 terra-1.6-3/terra/src/distRaster.cpp | 441 ++++++++-------- terra-1.6-3/terra/src/distance.cpp | 10 terra-1.6-3/terra/src/distance.h | 2 terra-1.6-3/terra/src/extract.cpp | 198 +++++-- terra-1.6-3/terra/src/file_utils.cpp | 25 terra-1.6-3/terra/src/file_utils.h | 17 terra-1.6-3/terra/src/focal.cpp | 68 +- terra-1.6-3/terra/src/gcp.cpp | 4 terra-1.6-3/terra/src/gdal_algs.cpp | 166 +++--- terra-1.6-3/terra/src/gdal_multidimensional.cpp | 138 +++-- terra-1.6-3/terra/src/gdalio.cpp | 83 +-- terra-1.6-3/terra/src/gdalio.h | 19 terra-1.6-3/terra/src/geos_methods.cpp | 360 +++++++++---- terra-1.6-3/terra/src/geos_spat.h | 17 terra-1.6-3/terra/src/geosphere.cpp | 82 +-- terra-1.6-3/terra/src/graticule.cpp | 2 terra-1.6-3/terra/src/math_utils.cpp | 4 terra-1.6-3/terra/src/math_utils.h | 2 terra-1.6-3/terra/src/mediancut.cpp | 17 terra-1.6-3/terra/src/memory.cpp | 14 terra-1.6-3/terra/src/ncdf.cpp | 2 terra-1.6-3/terra/src/ram.cpp | 17 terra-1.6-3/terra/src/ram.h | 17 terra-1.6-3/terra/src/raster_methods.cpp | 625 +++++++++++++++++------- terra-1.6-3/terra/src/raster_stats.cpp | 277 +++++++--- terra-1.6-3/terra/src/rasterize.cpp | 98 +-- terra-1.6-3/terra/src/read.cpp | 12 terra-1.6-3/terra/src/read_gdal.cpp | 184 +++---- terra-1.6-3/terra/src/read_ogr.cpp | 94 ++- terra-1.6-3/terra/src/recycle.h | 2 terra-1.6-3/terra/src/sample.cpp | 56 +- terra-1.6-3/terra/src/spatBase.cpp | 123 +++- terra-1.6-3/terra/src/spatBase.h | 2 terra-1.6-3/terra/src/spatDataframe.cpp | 457 +++++++++++++---- terra-1.6-3/terra/src/spatDataframe.h | 30 - terra-1.6-3/terra/src/spatFactor.cpp |only terra-1.6-3/terra/src/spatFactor.h | 166 +----- terra-1.6-3/terra/src/spatRaster.cpp | 152 +++-- terra-1.6-3/terra/src/spatRaster.h | 34 - terra-1.6-3/terra/src/spatRasterMultiple.h | 2 terra-1.6-3/terra/src/spatSources.cpp | 53 +- terra-1.6-3/terra/src/spatTime.cpp | 24 terra-1.6-3/terra/src/spatTime.h | 31 + terra-1.6-3/terra/src/spatVector.cpp | 83 ++- terra-1.6-3/terra/src/spatVector.h | 45 + terra-1.6-3/terra/src/string_utils.cpp | 10 terra-1.6-3/terra/src/string_utils.h | 16 terra-1.6-3/terra/src/vecmath.cpp | 2 terra-1.6-3/terra/src/vecmath.h | 3 terra-1.6-3/terra/src/vector_methods.cpp | 168 +++++- terra-1.6-3/terra/src/write.cpp | 22 terra-1.6-3/terra/src/write_gdal.cpp | 107 ++-- terra-1.6-3/terra/src/write_ogr.cpp | 92 ++- 214 files changed, 6538 insertions(+), 3868 deletions(-)
Title: Forecasting Functions for Time Series and Linear Models
Description: Methods and tools for displaying and analysing
univariate time series forecasts including exponential smoothing
via state space models and automatic ARIMA modelling.
Author: Rob Hyndman [aut, cre, cph] ,
George Athanasopoulos [aut] ,
Christoph Bergmeir [aut] ,
Gabriel Caceres [aut] ,
Leanne Chhay [aut],
Kirill Kuroptev [aut],
Mitchell O'Hara-Wild [aut] ,
Fotios Petropoulos [aut] ,
Slava Razbash [aut],
Earo Wang [aut] ,
F [...truncated...]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between forecast versions 8.16 dated 2022-01-09 and 8.17.0 dated 2022-07-25
forecast-8.16/forecast/man/accuracy.Rd |only forecast-8.16/forecast/man/forecast.Rd |only forecast-8.16/forecast/tests/testthat/Rplots.pdf |only forecast-8.17.0/forecast/DESCRIPTION | 40 +++-- forecast-8.17.0/forecast/MD5 | 87 ++++++------ forecast-8.17.0/forecast/NAMESPACE | 3 forecast-8.17.0/forecast/NEWS.md | 6 forecast-8.17.0/forecast/R/DM2.R | 58 +++++--- forecast-8.17.0/forecast/R/HoltWintersNew.R | 5 forecast-8.17.0/forecast/R/arfima.R | 2 forecast-8.17.0/forecast/R/arima.R | 6 forecast-8.17.0/forecast/R/attach.R | 20 +- forecast-8.17.0/forecast/R/bats.R | 6 forecast-8.17.0/forecast/R/calendar.R | 4 forecast-8.17.0/forecast/R/checkresiduals.R | 10 - forecast-8.17.0/forecast/R/clean.R | 6 forecast-8.17.0/forecast/R/dshw.r | 17 +- forecast-8.17.0/forecast/R/errors.R | 10 - forecast-8.17.0/forecast/R/ets.R | 19 +- forecast-8.17.0/forecast/R/etsforecast.R | 4 forecast-8.17.0/forecast/R/findfrequency.R |only forecast-8.17.0/forecast/R/forecast-package.R | 11 + forecast-8.17.0/forecast/R/forecast.R | 101 --------------- forecast-8.17.0/forecast/R/forecast2.R | 6 forecast-8.17.0/forecast/R/lm.R | 4 forecast-8.17.0/forecast/R/mforecast.R | 4 forecast-8.17.0/forecast/R/modelAR.R | 4 forecast-8.17.0/forecast/R/mstl.R | 4 forecast-8.17.0/forecast/R/naive.R | 2 forecast-8.17.0/forecast/R/newarima2.R | 8 - forecast-8.17.0/forecast/R/nnetar.R | 4 forecast-8.17.0/forecast/R/simulate.R | 2 forecast-8.17.0/forecast/R/simulate_tbats.R |only forecast-8.17.0/forecast/R/spline.R | 2 forecast-8.17.0/forecast/R/tbats.R | 6 forecast-8.17.0/forecast/build/vignette.rds |binary forecast-8.17.0/forecast/inst/doc/JSS2008.pdf |binary forecast-8.17.0/forecast/man/accuracy.default.Rd |only forecast-8.17.0/forecast/man/bizdays.Rd | 2 forecast-8.17.0/forecast/man/dm.test.Rd | 32 ++-- forecast-8.17.0/forecast/man/ets.Rd | 4 forecast-8.17.0/forecast/man/findfrequency.Rd | 2 forecast-8.17.0/forecast/man/forecast-package.Rd | 53 ++++++- forecast-8.17.0/forecast/man/forecast.ts.Rd |only forecast-8.17.0/forecast/man/reexports.Rd | 4 forecast-8.17.0/forecast/man/simulate.ets.Rd | 13 + forecast-8.17.0/forecast/tests/testthat/test-calendar.R | 6 forecast-8.17.0/forecast/tests/testthat/test-newarima2.R | 4 48 files changed, 297 insertions(+), 284 deletions(-)
Title: Raster-Based Spatial Stratification Algorithms
Description: Algorithms for the spatial stratification of landscapes, sampling and modeling of
spatially-varying phenomena. These algorithms offer a simple framework for the stratification
of geographic space based on raster layers representing landscape factors and/or factor scales.
The stratification process follows a hierarchical approach, which is based on first level units
(i.e., classification units) and second-level units (i.e., stratification units). Nonparametric
techniques allow to measure the correspondence between the geographic space and the landscape
configuration represented by the units. These correspondence metrics are useful to define
sampling schemes and to model the spatial variability of environmental phenomena. The
theoretical background of the algorithms and code examples are presented in Fuentes, Dorantes,
and Tipton (2021). <doi:10.31223/X50S57>.
Author: Bryan A. Fuentes [aut, cre] ,
Minerva J. Dorantes [aut] ,
John R. Tipton [aut] ,
Robert J. Hijmans [ctb] ,
Andrew G. Brown [ctb]
Maintainer: Bryan A. Fuentes <bryandrep@gmail.com>
Diff between rassta versions 1.0.3 dated 2022-02-25 and 1.0.4 dated 2022-07-25
DESCRIPTION | 24 +- MD5 | 58 +++--- NEWS.md | 55 ++++-- R/dummies.r | 71 +++++--- R/locations.r | 331 ++++++++++++++++++++------------------ R/observation.r | 134 +++++++-------- R/predict_functions.r | 407 +++++++++++++++++++++++++++++++---------------- R/select_functions.r | 2 R/signature.r | 36 +--- R/similarity.r | 64 +++---- R/som_pam.r | 65 ++++--- R/strata.r | 33 +-- README.md | 9 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/classunits.html | 278 ++++++++++++++++++++++++++++++-- inst/doc/modeling.Rmd | 6 inst/doc/modeling.html | 256 +++++++++++++++++++++++++++-- inst/doc/sampling.html | 286 ++++++++++++++++++++++++++++++--- inst/doc/signature.html | 297 +++++++++++++++++++++++++++++++--- inst/doc/similarity.html | 231 +++++++++++++++++++++++++- inst/doc/stratunits.html | 255 ++++++++++++++++++++++++++++- man/dummies.Rd | 2 man/locations.Rd | 13 - man/observation.Rd | 8 man/predict_functions.Rd | 97 ++++++++--- man/select_functions.Rd | 2 man/som_pam.Rd | 31 ++- man/strata.Rd | 12 - vignettes/modeling.Rmd | 6 30 files changed, 2377 insertions(+), 692 deletions(-)
Title: Parametric Time-to-Event Analysis with Variable Incubation
Phases
Description: Fit parametric models for time-to-event data that show an initial
'incubation period', i.e., a variable delay phase where the hazard is zero. The
delayed Weibull distribution serves as the foundational data model. The
specific method of 'MPSE' (maximum product of spacings estimation) is used for parameter
estimation. Bootstrap confidence intervals for parameters and significance
tests in a two group setting are provided.
Author: Matthias Kuhn [aut, cre]
Maintainer: Matthias Kuhn <matthias.kuhn@tu-dresden.de>
Diff between incubate versions 1.1.8 dated 2022-05-04 and 1.2.0 dated 2022-07-25
incubate-1.1.8/incubate/man/geomSpaceFactory.Rd |only incubate-1.1.8/incubate/man/near.Rd |only incubate-1.2.0/incubate/DESCRIPTION | 22 incubate-1.2.0/incubate/MD5 | 61 incubate-1.2.0/incubate/NAMESPACE | 3 incubate-1.2.0/incubate/NEWS.md | 20 incubate-1.2.0/incubate/R/data.R | 2 incubate-1.2.0/incubate/R/delay.R | 12 incubate-1.2.0/incubate/R/delay_estimation.R | 631 ++++++---- incubate-1.2.0/incubate/R/delay_test.R | 144 +- incubate-1.2.0/incubate/R/incubate-package.R | 4 incubate-1.2.0/incubate/R/utils.R | 21 incubate-1.2.0/incubate/README.md | 49 incubate-1.2.0/incubate/data/stankovic.rda |binary incubate-1.2.0/incubate/inst |only incubate-1.2.0/incubate/man/DelayedExponential.Rd | 4 incubate-1.2.0/incubate/man/DelayedWeibull.Rd | 6 incubate-1.2.0/incubate/man/as_percent.Rd |only incubate-1.2.0/incubate/man/bsDataStep.Rd | 8 incubate-1.2.0/incubate/man/confint.incubate_fit.Rd | 14 incubate-1.2.0/incubate/man/delay_fit.Rd | 5 incubate-1.2.0/incubate/man/delay_model.Rd | 10 incubate-1.2.0/incubate/man/figures/README-example_fit-1.png |binary incubate-1.2.0/incubate/man/figures/README-example_inf-1.png |binary incubate-1.2.0/incubate/man/getPars.Rd | 13 incubate-1.2.0/incubate/man/objFunFactory.Rd |only incubate-1.2.0/incubate/man/power_diff.Rd | 2 incubate-1.2.0/incubate/man/stankovic.Rd | 2 incubate-1.2.0/incubate/man/test_GOF.Rd | 5 incubate-1.2.0/incubate/man/test_diff.Rd | 6 incubate-1.2.0/incubate/man/transform.incubate_fit.Rd |only incubate-1.2.0/incubate/tests/testthat/test-delay_estimation.R | 64 - incubate-1.2.0/incubate/tests/testthat/test-delay_test.R | 13 33 files changed, 658 insertions(+), 463 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-01 0.2.15
2022-06-22 0.2.6
2022-06-18 0.2.5
2022-04-26 0.2.3
2021-08-22 0.1.38
2021-08-14 0.1.37
2021-03-29 0.1.29
2021-03-17 0.1.28
2021-03-09 0.1.19
2021-03-05 0.1.10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-27 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-02 0.2.32
2022-03-21 0.2.28
2021-08-13 0.2.17
2021-06-04 0.2.11