Title: Matrices for Repeat-Sales Price Indexes
Description: A small package for calculating the matrices in Shiller (1991, <doi:10.1016/S1051-1377(05)80028-2>) that serve as the foundation for many repeat-sales price indexes.
Author: Steve Martin [aut, cre, cph]
Maintainer: Steve Martin <stevemartin041@gmail.com>
Diff between rsmatrix versions 0.2.3 dated 2022-03-15 and 0.2.4 dated 2022-08-13
rsmatrix-0.2.3/rsmatrix/NEWS |only rsmatrix-0.2.4/rsmatrix/DESCRIPTION | 6 ++-- rsmatrix-0.2.4/rsmatrix/MD5 | 16 +++++------ rsmatrix-0.2.4/rsmatrix/NAMESPACE | 1 rsmatrix-0.2.4/rsmatrix/NEWS.md |only rsmatrix-0.2.4/rsmatrix/R/rs_matrix.R | 13 ++++++++- rsmatrix-0.2.4/rsmatrix/man/rs_matrix.Rd | 6 ++-- rsmatrix-0.2.4/rsmatrix/man/rs_pairs.Rd | 2 - rsmatrix-0.2.4/rsmatrix/tests/tests_matrices.R | 16 +++++++---- rsmatrix-0.2.4/rsmatrix/tests/tests_matrices.Rout.save | 24 +++++++++++------ 10 files changed, 55 insertions(+), 29 deletions(-)
Title: The (Adaptive) LASSO and Elastic Net Penalized Least Squares,
Logistic Regression, Hybrid Huberized Support Vector Machines,
Squared Hinge Loss Support Vector Machines and Expectile
Regression using a Fast Generalized Coordinate Descent
Algorithm
Description: Implements a generalized coordinate descent (GCD) algorithm
for computing the solution paths of the hybrid Huberized support vector
machine (HHSVM) and its generalizations. Supported models include the
(adaptive) LASSO and elastic net penalized least squares, logistic
regression, HHSVM, squared hinge loss SVM and expectile regression.
Author: Yi Yang <yi.yang6@mcgill.ca>, Yuwen Gu <yuwen.gu@uconn.edu>, Hui Zou
<hzou@stat.umn.edu>
Maintainer: Yi Yang <yi.yang6@mcgill.ca>
Diff between gcdnet versions 1.0.5 dated 2017-11-20 and 1.0.6 dated 2022-08-13
gcdnet-1.0.5/gcdnet/src/registerDynamicSymbol.c |only gcdnet-1.0.6/gcdnet/ChangeLog | 86 +- gcdnet-1.0.6/gcdnet/DESCRIPTION | 31 gcdnet-1.0.6/gcdnet/MD5 | 105 +-- gcdnet-1.0.6/gcdnet/NAMESPACE | 71 +- gcdnet-1.0.6/gcdnet/R/coef.cv.gcdnet.R | 71 +- gcdnet-1.0.6/gcdnet/R/coef.erpath.R | 42 - gcdnet-1.0.6/gcdnet/R/coef.gcdnet.R | 80 ++ gcdnet-1.0.6/gcdnet/R/coef.hsvmpath.R | 42 - gcdnet-1.0.6/gcdnet/R/coef.logitpath.R | 42 - gcdnet-1.0.6/gcdnet/R/coef.lspath.R | 43 - gcdnet-1.0.6/gcdnet/R/coef.sqsvmpath.R | 42 - gcdnet-1.0.6/gcdnet/R/cv.erpath.R | 58 - gcdnet-1.0.6/gcdnet/R/cv.gcdnet.R | 183 ++++- gcdnet-1.0.6/gcdnet/R/cv.hsvmpath.R | 63 +- gcdnet-1.0.6/gcdnet/R/cv.logitpath.R | 70 +- gcdnet-1.0.6/gcdnet/R/cv.lspath.R | 59 - gcdnet-1.0.6/gcdnet/R/cv.sqsvmpath.R | 66 +- gcdnet-1.0.6/gcdnet/R/erpath.R | 47 - gcdnet-1.0.6/gcdnet/R/gcdnet-package.R |only gcdnet-1.0.6/gcdnet/R/gcdnet.R | 432 +++++++++++-- gcdnet-1.0.6/gcdnet/R/hsvmpath.R | 54 - gcdnet-1.0.6/gcdnet/R/logitpath.R | 47 - gcdnet-1.0.6/gcdnet/R/loss.R | 7 gcdnet-1.0.6/gcdnet/R/lspath.R | 41 - gcdnet-1.0.6/gcdnet/R/plot.cv.gcdnet.R | 105 ++- gcdnet-1.0.6/gcdnet/R/plot.gcdnet.R | 153 +++- gcdnet-1.0.6/gcdnet/R/predict.cv.gcdnet.R | 66 +- gcdnet-1.0.6/gcdnet/R/predict.erpath.R | 37 - gcdnet-1.0.6/gcdnet/R/predict.gcdnet.R | 78 ++ gcdnet-1.0.6/gcdnet/R/predict.hsvmpath.R | 38 - gcdnet-1.0.6/gcdnet/R/predict.logitpath.R | 38 - gcdnet-1.0.6/gcdnet/R/predict.lspath.R | 37 - gcdnet-1.0.6/gcdnet/R/predict.sqsvmpath.R | 38 - gcdnet-1.0.6/gcdnet/R/print.gcdnet.R | 47 + gcdnet-1.0.6/gcdnet/R/sqsvmpath.R | 47 - gcdnet-1.0.6/gcdnet/R/utilities.R | 292 ++++----- gcdnet-1.0.6/gcdnet/man/FHT.Rd | 43 - gcdnet-1.0.6/gcdnet/man/coef.Rd |only gcdnet-1.0.6/gcdnet/man/coef.cv.gcdnet.Rd | 91 +- gcdnet-1.0.6/gcdnet/man/coef.gcdnet.Rd | 90 +- gcdnet-1.0.6/gcdnet/man/cv.gcdnet.Rd | 183 +++-- gcdnet-1.0.6/gcdnet/man/gcdnet.Rd | 444 ++++++++------ gcdnet-1.0.6/gcdnet/man/plot.cv.gcdnet.Rd | 77 +- gcdnet-1.0.6/gcdnet/man/plot.gcdnet.Rd | 72 +- gcdnet-1.0.6/gcdnet/man/predict.Rd |only gcdnet-1.0.6/gcdnet/man/predict.cv.gcdnet.Rd | 92 +- gcdnet-1.0.6/gcdnet/man/predict.gcdnet.Rd | 100 +-- gcdnet-1.0.6/gcdnet/man/print.gcdnet.Rd | 61 + gcdnet-1.0.6/gcdnet/src/auxiliary.f90 | 168 +++-- gcdnet-1.0.6/gcdnet/src/erlassoNET.f90 | 752 +++++++++++------------- gcdnet-1.0.6/gcdnet/src/hsvmlassoNET.f90 | 751 +++++++++++------------ gcdnet-1.0.6/gcdnet/src/init.c |only gcdnet-1.0.6/gcdnet/src/loglassoNET.f90 | 663 ++++++++++----------- gcdnet-1.0.6/gcdnet/src/lslassoNET.f90 | 655 ++++++++++---------- gcdnet-1.0.6/gcdnet/src/sqsvmlassoNET.f90 | 676 ++++++++++----------- 56 files changed, 4388 insertions(+), 3288 deletions(-)
Title: Analyzing Zero-Inflated and Zero-Altered Data
Description: Computes maximum likelihood estimate of general, zero inflated, and zero altered models for discrete and continuous distributions. Computes Kolmogorov-Smirnov (KS) test and
likelihood ratio test for general, zero-inflated, and zero-altered data.
It obtains the inverse of fisher information matrix and confidence interval for the parameters of general, zero inflated, and zero altered models. It simulate random deviates from zero inflated or hurdle models to obtain maximum likelihood estimate.
It is based on the work of Aldirawi et al. (2022) <doi:10.1007/s42519-021-00230-y>.
Author: Niloufar Dousti Mousavi [aut, cre, cph],
Hani Aldirawi [aut, cph],
Jie Yang [aut, cph]
Maintainer: Niloufar Dousti Mousavi <sdoust2@uic.edu>
Diff between AZIAD versions 0.0.1 dated 2022-03-11 and 0.0.2 dated 2022-08-13
AZIAD-0.0.1/AZIAD/man/lrt.B.Rd |only AZIAD-0.0.2/AZIAD/DESCRIPTION | 8 AZIAD-0.0.2/AZIAD/MD5 | 19 - AZIAD-0.0.2/AZIAD/NAMESPACE | 1 AZIAD-0.0.2/AZIAD/R/main.R | 656 +++++++++++++------------------------- AZIAD-0.0.2/AZIAD/man/kstest.A.Rd | 2 AZIAD-0.0.2/AZIAD/man/kstest.B.Rd | 2 AZIAD-0.0.2/AZIAD/man/lrt.A.Rd | 5 AZIAD-0.0.2/AZIAD/man/new.mle.Rd | 2 AZIAD-0.0.2/AZIAD/man/ofp.Rd | 2 AZIAD-0.0.2/AZIAD/man/zih.mle.Rd | 2 11 files changed, 255 insertions(+), 444 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake <jefflaake@gmail.com> with code contributions from Eldar
Rakhimberdiev, Ben Augustine, Daniel Turek, Brett McClintock, and Jim Hines and example data and analysis
from Bret Collier, Jay Rotella, David Pavlacky, Andrew Paul, Luke Eberhart-
[...truncated...]
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 2.2.7 dated 2019-11-06 and 3.0.0 dated 2022-08-13
RMark-2.2.7/RMark/R/read.mark.binary.linux.R |only RMark-2.2.7/RMark/man/read.mark.binary.Rd |only RMark-3.0.0/RMark/DESCRIPTION | 12 RMark-3.0.0/RMark/MD5 | 289 +- RMark-3.0.0/RMark/NAMESPACE | 1 RMark-3.0.0/RMark/NEWS | 63 RMark-3.0.0/RMark/R/PIMS.R | 2 RMark-3.0.0/RMark/R/RMark-package.R | 562 ++-- RMark-3.0.0/RMark/R/TransitionMatrix.R | 4 RMark-3.0.0/RMark/R/add.design.data.R | 9 RMark-3.0.0/RMark/R/adjust.chat.R | 8 RMark-3.0.0/RMark/R/adjust.parameter.count.R | 4 RMark-3.0.0/RMark/R/compute.design.data.R | 6 RMark-3.0.0/RMark/R/covariate.predictions.r | 35 RMark-3.0.0/RMark/R/create.model.list.R | 2 RMark-3.0.0/RMark/R/deltamethod.r | 2 RMark-3.0.0/RMark/R/export.MARK.r | 10 RMark-3.0.0/RMark/R/export.chdata.R | 6 RMark-3.0.0/RMark/R/export.model.r | 7 RMark-3.0.0/RMark/R/extract.mark.output.R | 18 RMark-3.0.0/RMark/R/fill.covariates.R | 4 RMark-3.0.0/RMark/R/get.real.R | 4 RMark-3.0.0/RMark/R/make.design.data.R | 34 RMark-3.0.0/RMark/R/make.mark.model.R | 104 RMark-3.0.0/RMark/R/mark.R | 31 RMark-3.0.0/RMark/R/mark.wrapper.R | 4 RMark-3.0.0/RMark/R/mark.wrapper.parallel.r | 10 RMark-3.0.0/RMark/R/merge.mark.r | 4 RMark-3.0.0/RMark/R/model.average.list.r | 8 RMark-3.0.0/RMark/R/model.average.marklist.R | 16 RMark-3.0.0/RMark/R/model.table.R | 5 RMark-3.0.0/RMark/R/popan.r | 12 RMark-3.0.0/RMark/R/predict_real.R | 4 RMark-3.0.0/RMark/R/process.data.R | 2 RMark-3.0.0/RMark/R/read.mark.binary.R | 177 - RMark-3.0.0/RMark/R/release.gof.R | 20 RMark-3.0.0/RMark/R/remove.mark.r | 2 RMark-3.0.0/RMark/R/rerun.mark.R | 16 RMark-3.0.0/RMark/R/run.mark.model.R | 4 RMark-3.0.0/RMark/R/store.r | 4 RMark-3.0.0/RMark/R/utility.r | 10 RMark-3.0.0/RMark/R/var.components.R | 4 RMark-3.0.0/RMark/R/var.components.reml.r | 2 RMark-3.0.0/RMark/inst/CITATION | 2 RMark-3.0.0/RMark/inst/DerivedPar.txt | 6 RMark-3.0.0/RMark/inst/models.txt | 1 RMark-3.0.0/RMark/inst/parameters.txt | 7 RMark-3.0.0/RMark/man/ABeginnersGuide.Rd | 276 +- RMark-3.0.0/RMark/man/Blackduck.Rd | 176 - RMark-3.0.0/RMark/man/Burnham.Rd | 194 - RMark-3.0.0/RMark/man/Density.Rd | 186 - RMark-3.0.0/RMark/man/Donovan.7.Rd | 86 RMark-3.0.0/RMark/man/Donovan.8.Rd | 88 RMark-3.0.0/RMark/man/IELogitNormalMR.Rd | 84 RMark-3.0.0/RMark/man/LogitNormalMR.Rd | 64 RMark-3.0.0/RMark/man/MS_popan.Rd | 112 RMark-3.0.0/RMark/man/MStruncate.Rd | 74 RMark-3.0.0/RMark/man/NSpeciesOcc.Rd | 62 RMark-3.0.0/RMark/man/NicholsMSOccupancy.Rd | 156 - RMark-3.0.0/RMark/man/PIMS.Rd | 86 RMark-3.0.0/RMark/man/Paradise_shelduck.Rd | 152 - RMark-3.0.0/RMark/man/PoissonMR.Rd | 64 RMark-3.0.0/RMark/man/Poisson_twoMR.Rd | 64 RMark-3.0.0/RMark/man/RDMultScalOcc.Rd | 176 - RMark-3.0.0/RMark/man/RDOccupancy.Rd | 647 ++--- RMark-3.0.0/RMark/man/RDSalamander.Rd | 88 RMark-3.0.0/RMark/man/TransitionMatrix.Rd | 266 +- RMark-3.0.0/RMark/man/Whatsnew.Rd | 2612 +++++++++++----------- RMark-3.0.0/RMark/man/add.design.data.Rd | 279 +- RMark-3.0.0/RMark/man/adjust.parameter.count.Rd | 128 - RMark-3.0.0/RMark/man/adjust.value.Rd | 174 - RMark-3.0.0/RMark/man/brownie.Rd | 142 - RMark-3.0.0/RMark/man/cleanup.Rd | 126 - RMark-3.0.0/RMark/man/collect.model.names.Rd | 100 RMark-3.0.0/RMark/man/collect.models.Rd | 167 - RMark-3.0.0/RMark/man/compute.design.data.Rd | 205 - RMark-3.0.0/RMark/man/compute.link.Rd | 104 RMark-3.0.0/RMark/man/compute.links.from.reals.Rd | 115 RMark-3.0.0/RMark/man/compute.real.Rd | 216 - RMark-3.0.0/RMark/man/convert.inp.Rd | 284 +- RMark-3.0.0/RMark/man/convert.link.to.real.Rd | 84 RMark-3.0.0/RMark/man/covariate.predictions.Rd | 629 ++--- RMark-3.0.0/RMark/man/crdms.Rd | 199 - RMark-3.0.0/RMark/man/create.mark.mcmc.Rd | 84 RMark-3.0.0/RMark/man/create.model.list.Rd | 228 - RMark-3.0.0/RMark/man/deer.Rd | 243 +- RMark-3.0.0/RMark/man/deltamethod.special.Rd | 124 - RMark-3.0.0/RMark/man/deriv_inverse.link.Rd | 82 RMark-3.0.0/RMark/man/dipper.Rd | 654 ++--- RMark-3.0.0/RMark/man/edwards.eberhardt.Rd | 208 - RMark-3.0.0/RMark/man/example.data.Rd | 116 RMark-3.0.0/RMark/man/export.MARK.Rd | 171 - RMark-3.0.0/RMark/man/export.chdata.Rd | 118 RMark-3.0.0/RMark/man/export.model.Rd | 103 RMark-3.0.0/RMark/man/extract.indices.Rd | 272 +- RMark-3.0.0/RMark/man/extract.mark.output.Rd | 108 RMark-3.0.0/RMark/man/fill.covariates.Rd | 152 - RMark-3.0.0/RMark/man/find.covariates.Rd | 118 RMark-3.0.0/RMark/man/get.link.Rd | 102 RMark-3.0.0/RMark/man/get.real.Rd | 253 +- RMark-3.0.0/RMark/man/import.chdata.Rd | 183 - RMark-3.0.0/RMark/man/inverse.link.Rd | 102 RMark-3.0.0/RMark/man/killdeer.Rd | 153 - RMark-3.0.0/RMark/man/larksparrow.Rd | 231 - RMark-3.0.0/RMark/man/make.design.data.Rd | 773 +++--- RMark-3.0.0/RMark/man/make.mark.model.Rd | 912 +++---- RMark-3.0.0/RMark/man/make.time.factor.Rd | 112 RMark-3.0.0/RMark/man/mallard.Rd | 516 ++-- RMark-3.0.0/RMark/man/mark.Rd | 620 ++--- RMark-3.0.0/RMark/man/mark.wrapper.Rd | 200 - RMark-3.0.0/RMark/man/mark.wrapper.parallel.Rd | 276 +- RMark-3.0.0/RMark/man/mata.wald.Rd | 242 +- RMark-3.0.0/RMark/man/merge.mark.Rd | 66 RMark-3.0.0/RMark/man/merge_design.covariates.Rd | 166 - RMark-3.0.0/RMark/man/model.average.Rd | 62 RMark-3.0.0/RMark/man/model.average.list.Rd | 296 +- RMark-3.0.0/RMark/man/model.average.marklist.Rd | 384 +-- RMark-3.0.0/RMark/man/model.table.Rd | 277 +- RMark-3.0.0/RMark/man/mstrata.Rd | 193 - RMark-3.0.0/RMark/man/popan.derived.Rd | 248 +- RMark-3.0.0/RMark/man/predict_real.Rd | 192 - RMark-3.0.0/RMark/man/print.mark.Rd | 92 RMark-3.0.0/RMark/man/print.marklist.Rd | 94 RMark-3.0.0/RMark/man/print.summary.mark.Rd | 52 RMark-3.0.0/RMark/man/process.ch.Rd | 76 RMark-3.0.0/RMark/man/process.data.Rd | 373 +-- RMark-3.0.0/RMark/man/readMarkVcv.Rd |only RMark-3.0.0/RMark/man/release.gof.Rd | 81 RMark-3.0.0/RMark/man/remove.mark.Rd | 68 RMark-3.0.0/RMark/man/rerun.mark.Rd | 330 +- RMark-3.0.0/RMark/man/robust.Rd | 326 +- RMark-3.0.0/RMark/man/run.mark.model.Rd | 236 + RMark-3.0.0/RMark/man/run.models.Rd | 90 RMark-3.0.0/RMark/man/salamander.Rd | 82 RMark-3.0.0/RMark/man/setup.model.Rd | 100 RMark-3.0.0/RMark/man/setup.parameters.Rd | 181 - RMark-3.0.0/RMark/man/skagit.Rd | 186 - RMark-3.0.0/RMark/man/splitCH.Rd | 94 RMark-3.0.0/RMark/man/store.Rd | 60 RMark-3.0.0/RMark/man/strip.comments.Rd | 56 RMark-3.0.0/RMark/man/summary.mark.Rd | 182 - RMark-3.0.0/RMark/man/summary_ch.Rd | 170 - RMark-3.0.0/RMark/man/valid.parameters.Rd | 56 RMark-3.0.0/RMark/man/var.components.Rd | 172 - RMark-3.0.0/RMark/man/var.components.reml.Rd | 175 - RMark-3.0.0/RMark/man/weta.Rd | 208 - RMark-3.0.0/RMark/man/wwdo.popan.Rd | 289 +- 147 files changed, 11928 insertions(+), 11443 deletions(-)
Title: Data Visualization for IP Addresses and Networks
Description: A 'ggplot2' extension that enables visualization of IP
(Internet Protocol) addresses and networks. The address space is
mapped onto the Cartesian coordinate system using a space-filling
curve. Offers full support for both IPv4 and IPv6 (Internet Protocol
versions 4 and 6) address spaces.
Author: David Hall [aut, cre]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ggip versions 0.2.0 dated 2020-10-11 and 0.2.1 dated 2022-08-13
ggip-0.2.0/ggip/tests/testthat/test-stop-bad-aes-type.txt |only ggip-0.2.0/ggip/tests/testthat/test-stop-bad-coord.txt |only ggip-0.2.0/ggip/tests/testthat/test-stop-missing-aes.txt |only ggip-0.2.0/ggip/tests/testthat/test-stop-missing-coord.txt |only ggip-0.2.1/ggip/DESCRIPTION | 21 - ggip-0.2.1/ggip/MD5 | 28 -- ggip-0.2.1/ggip/NEWS.md | 5 ggip-0.2.1/ggip/README.md | 4 ggip-0.2.1/ggip/build/vignette.rds |binary ggip-0.2.1/ggip/inst/doc/ggip.html | 179 ++++++++----- ggip-0.2.1/ggip/inst/doc/visualizing-ip-data.html | 143 +++++++--- ggip-0.2.1/ggip/man/ggip-package.Rd | 8 ggip-0.2.1/ggip/src/RcppExports.cpp | 5 ggip-0.2.1/ggip/tests/testthat/Rplots.pdf |binary ggip-0.2.1/ggip/tests/testthat/_snaps |only ggip-0.2.1/ggip/tests/testthat/test-error.R | 16 - ggip-0.2.1/ggip/tests/testthat/test-ip_to_cartesian.R | 38 +- 17 files changed, 274 insertions(+), 173 deletions(-)
Title: Working with Audio and Video in R
Description: Bindings to 'FFmpeg' <http://www.ffmpeg.org/> AV library for working with
audio and video in R. Generates high quality video from images or R graphics with
custom audio. Also offers high performance tools for reading raw audio, creating
'spectrograms', and converting between countless audio / video formats. This package
interfaces directly to the C API and does not require any command line utilities.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between av versions 0.7.0 dated 2022-02-08 and 0.8.0 dated 2022-08-13
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 4 ++++ man/formats.Rd | 2 +- src/fft.c | 34 +++++++++++++++++++++++++++++++++- src/info.c | 12 ++++++++++++ src/video.c | 34 +++++++++++++++++++++++++++++++--- src/winfunc.c | 1 + 8 files changed, 93 insertions(+), 16 deletions(-)
Title: Functions to Simulate Haplotypes
Description: Simulate haplotypes through meioses. Allows specification
of population parameters.
Author: Albart Coster [aut, cre],
John Bastiaansen [aut]
Maintainer: Albart Coster <albart@dairyconsult.nl>
Diff between HaploSim versions 1.8.4.1 dated 2022-06-22 and 1.8.4.2 dated 2022-08-13
HaploSim-1.8.4.1/HaploSim/inst |only HaploSim-1.8.4.2/HaploSim/DESCRIPTION | 12 ++++++------ HaploSim-1.8.4.2/HaploSim/MD5 | 3 +-- 3 files changed, 7 insertions(+), 8 deletions(-)
Title: Arbitrary Dimensional Clifford Algebras
Description: A suite of routines for Clifford algebras, using the
'Map' class of the Standard Template Library. Canonical
reference: Hestenes (1987, ISBN 90-277-1673-0, "Clifford algebra
to geometric calculus"). Special cases including Lorentz transforms,
quaternion multiplication, and Grassman algebra, are discussed.
Conformal geometric algebra theory is implemented. Uses 'disordR'
discipline.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between clifford versions 1.0-7 dated 2022-05-02 and 1.0-8 dated 2022-08-13
DESCRIPTION | 9 +++++---- MD5 | 24 ++++++++++++------------ build/clifford.pdf |binary build/partial.rdb |binary build/vignette.rds |binary inst/doc/clifford.pdf |binary inst/doc/hitzer.pdf |binary man/Extract.Rd | 3 ++- man/Ops.clifford.Rd | 10 +++++----- man/clifford.Rd | 2 +- man/grade.Rd | 30 ++++++++++++++++++++---------- man/signature.Rd | 10 ++++------ src/clifford.h | 6 +++--- 13 files changed, 52 insertions(+), 42 deletions(-)
Title: Pedigree Functions
Description: Pedigree related functions.
Author: Albart Coster [aut, cre]
Maintainer: Albart Coster <albart@dairyconsult.nl>
Diff between pedigree versions 1.4.1 dated 2022-06-24 and 1.4.2 dated 2022-08-13
pedigree-1.4.1/pedigree/R/OldcountGen.R |only pedigree-1.4.1/pedigree/R/read.Hendixpedigree.R |only pedigree-1.4.1/pedigree/R/read.IPGpedigree.R |only pedigree-1.4.2/pedigree/DESCRIPTION | 14 - pedigree-1.4.2/pedigree/MD5 | 18 - pedigree-1.4.2/pedigree/NAMESPACE | 20 + pedigree-1.4.2/pedigree/R/drivers.r | 242 ++++++++++++------------ pedigree-1.4.2/pedigree/man/gblup.Rd | 113 ++++++----- pedigree-1.4.2/pedigree/man/makeA.Rd | 63 +++--- pedigree-1.4.2/pedigree/man/makeAinv.Rd | 67 +++--- pedigree-1.4.2/pedigree/src/Pedigree.cpp | 14 - pedigree-1.4.2/pedigree/src/pedigree_init.c |only 12 files changed, 285 insertions(+), 266 deletions(-)
Title: Access Google Sheets using the Sheets API V4
Description: Interact with Google Sheets through the Sheets API v4
<https://developers.google.com/sheets/api>. "API" is an acronym for
"application programming interface"; the Sheets API allows users to
interact with Google Sheets programmatically, instead of via a web
browser. The "v4" refers to the fact that the Sheets API is currently
at version 4. This package can read and write both the metadata and
the cell data in a Sheet.
Author: Jennifer Bryan [cre, aut] ,
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between googlesheets4 versions 1.0.0 dated 2021-07-21 and 1.0.1 dated 2022-08-13
googlesheets4-1.0.0/googlesheets4/tests/testthat/_snaps/argument-checkers.md |only googlesheets4-1.0.0/googlesheets4/tests/testthat/test-argument-checkers.R |only googlesheets4-1.0.0/googlesheets4/tests/testthat/test-utils-sheet-geometry.R |only googlesheets4-1.0.1/googlesheets4/DESCRIPTION | 30 - googlesheets4-1.0.1/googlesheets4/MD5 | 187 ++++------ googlesheets4-1.0.1/googlesheets4/NAMESPACE | 1 googlesheets4-1.0.1/googlesheets4/NEWS.md | 16 googlesheets4-1.0.1/googlesheets4/R/cell-specification.R | 32 - googlesheets4-1.0.1/googlesheets4/R/ctype.R | 51 +- googlesheets4-1.0.1/googlesheets4/R/get_cells.R | 18 googlesheets4-1.0.1/googlesheets4/R/googlesheets4-package.R | 2 googlesheets4-1.0.1/googlesheets4/R/gs4_auth.R | 77 +--- googlesheets4-1.0.1/googlesheets4/R/gs4_create.R | 62 +-- googlesheets4-1.0.1/googlesheets4/R/gs4_example.R | 32 + googlesheets4-1.0.1/googlesheets4/R/gs4_find.R | 22 - googlesheets4-1.0.1/googlesheets4/R/gs4_formula.R | 68 +-- googlesheets4-1.0.1/googlesheets4/R/gs4_get.R | 6 googlesheets4-1.0.1/googlesheets4/R/gs4_share.R | 12 googlesheets4-1.0.1/googlesheets4/R/make_column.R | 23 - googlesheets4-1.0.1/googlesheets4/R/range_add_named.R | 31 - googlesheets4-1.0.1/googlesheets4/R/range_add_protection.R | 156 ++++---- googlesheets4-1.0.1/googlesheets4/R/range_add_validation.R | 96 ++--- googlesheets4-1.0.1/googlesheets4/R/range_autofit.R | 66 +-- googlesheets4-1.0.1/googlesheets4/R/range_delete.R | 63 +-- googlesheets4-1.0.1/googlesheets4/R/range_flood.R | 70 +-- googlesheets4-1.0.1/googlesheets4/R/range_read.R | 135 ++++--- googlesheets4-1.0.1/googlesheets4/R/range_read_cells.R | 18 googlesheets4-1.0.1/googlesheets4/R/range_spec.R | 5 googlesheets4-1.0.1/googlesheets4/R/range_speedread.R | 43 +- googlesheets4-1.0.1/googlesheets4/R/range_write.R | 74 +-- googlesheets4-1.0.1/googlesheets4/R/request_generate.R | 4 googlesheets4-1.0.1/googlesheets4/R/request_make.R | 5 googlesheets4-1.0.1/googlesheets4/R/schema_GridCoordinate.R | 6 googlesheets4-1.0.1/googlesheets4/R/schema_Spreadsheet.R | 18 googlesheets4-1.0.1/googlesheets4/R/sheet_add.R | 63 +-- googlesheets4-1.0.1/googlesheets4/R/sheet_append.R | 54 +- googlesheets4-1.0.1/googlesheets4/R/sheet_copy.R | 87 ++-- googlesheets4-1.0.1/googlesheets4/R/sheet_delete.R | 37 + googlesheets4-1.0.1/googlesheets4/R/sheet_freeze.R | 31 - googlesheets4-1.0.1/googlesheets4/R/sheet_properties.R | 10 googlesheets4-1.0.1/googlesheets4/R/sheet_relocate.R | 76 ++-- googlesheets4-1.0.1/googlesheets4/R/sheet_rename.R | 26 - googlesheets4-1.0.1/googlesheets4/R/sheet_resize.R | 45 +- googlesheets4-1.0.1/googlesheets4/R/sheet_write.R | 72 +-- googlesheets4-1.0.1/googlesheets4/R/sheets_id-class.R | 10 googlesheets4-1.0.1/googlesheets4/R/utils-cell-ranges.R | 38 +- googlesheets4-1.0.1/googlesheets4/R/utils-sheet.R | 49 +- googlesheets4-1.0.1/googlesheets4/R/utils-ui.R | 74 ++- googlesheets4-1.0.1/googlesheets4/R/utils.R | 92 +++- googlesheets4-1.0.1/googlesheets4/README.md | 45 +- googlesheets4-1.0.1/googlesheets4/inst/WORDLIST | 2 googlesheets4-1.0.1/googlesheets4/man/cell-specification.Rd | 32 - googlesheets4-1.0.1/googlesheets4/man/googlesheets4-configuration.Rd | 52 +- googlesheets4-1.0.1/googlesheets4/man/googlesheets4-package.Rd | 10 googlesheets4-1.0.1/googlesheets4/man/gs4_auth.Rd | 38 +- googlesheets4-1.0.1/googlesheets4/man/gs4_auth_configure.Rd | 4 googlesheets4-1.0.1/googlesheets4/man/gs4_create.Rd | 58 +-- googlesheets4-1.0.1/googlesheets4/man/gs4_deauth.Rd | 14 googlesheets4-1.0.1/googlesheets4/man/gs4_find.Rd | 22 - googlesheets4-1.0.1/googlesheets4/man/gs4_formula.Rd | 64 +-- googlesheets4-1.0.1/googlesheets4/man/gs4_get.Rd | 6 googlesheets4-1.0.1/googlesheets4/man/gs4_token.Rd | 16 googlesheets4-1.0.1/googlesheets4/man/range_autofit.Rd | 58 +-- googlesheets4-1.0.1/googlesheets4/man/range_delete.Rd | 30 - googlesheets4-1.0.1/googlesheets4/man/range_flood.Rd | 70 +-- googlesheets4-1.0.1/googlesheets4/man/range_read.Rd | 26 - googlesheets4-1.0.1/googlesheets4/man/range_read_cells.Rd | 18 googlesheets4-1.0.1/googlesheets4/man/range_speedread.Rd | 40 +- googlesheets4-1.0.1/googlesheets4/man/range_write.Rd | 66 +-- googlesheets4-1.0.1/googlesheets4/man/request_generate.Rd | 3 googlesheets4-1.0.1/googlesheets4/man/request_make.Rd | 2 googlesheets4-1.0.1/googlesheets4/man/sheet_add.Rd | 50 +- googlesheets4-1.0.1/googlesheets4/man/sheet_append.Rd | 54 +- googlesheets4-1.0.1/googlesheets4/man/sheet_copy.Rd | 66 +-- googlesheets4-1.0.1/googlesheets4/man/sheet_delete.Rd | 30 - googlesheets4-1.0.1/googlesheets4/man/sheet_properties.Rd | 10 googlesheets4-1.0.1/googlesheets4/man/sheet_relocate.Rd | 54 +- googlesheets4-1.0.1/googlesheets4/man/sheet_rename.Rd | 26 - googlesheets4-1.0.1/googlesheets4/man/sheet_resize.Rd | 42 +- googlesheets4-1.0.1/googlesheets4/man/sheet_write.Rd | 72 +-- googlesheets4-1.0.1/googlesheets4/man/spread_sheet.Rd | 14 googlesheets4-1.0.1/googlesheets4/tests/spelling.R | 9 googlesheets4-1.0.1/googlesheets4/tests/testthat/_snaps/range_read.md |only googlesheets4-1.0.1/googlesheets4/tests/testthat/_snaps/schemas.md | 17 googlesheets4-1.0.1/googlesheets4/tests/testthat/_snaps/sheet_add.md | 5 googlesheets4-1.0.1/googlesheets4/tests/testthat/_snaps/sheets_id-class.md | 21 - googlesheets4-1.0.1/googlesheets4/tests/testthat/_snaps/utils-ui.md | 3 googlesheets4-1.0.1/googlesheets4/tests/testthat/helper.R | 23 - googlesheets4-1.0.1/googlesheets4/tests/testthat/test-get_cells.R |only googlesheets4-1.0.1/googlesheets4/tests/testthat/test-range_autofit.R | 6 googlesheets4-1.0.1/googlesheets4/tests/testthat/test-range_read.R | 68 +++ googlesheets4-1.0.1/googlesheets4/tests/testthat/test-range_write.R | 19 - googlesheets4-1.0.1/googlesheets4/tests/testthat/test-rectangle.R | 14 googlesheets4-1.0.1/googlesheets4/tests/testthat/test-schemas.R | 3 googlesheets4-1.0.1/googlesheets4/tests/testthat/test-sheet_copy.R | 3 googlesheets4-1.0.1/googlesheets4/tests/testthat/test-utils-cell-ranges.R | 28 - googlesheets4-1.0.1/googlesheets4/tests/testthat/test-utils-sheet.R | 1 97 files changed, 1862 insertions(+), 1645 deletions(-)
Title: Time Feature Extrapolation Using Spectral Analysis and
Jack-Knife Resampling
Description: Proposes application of spectral analysis and jack-knife resampling for multivariate sequence forecasting. The application allows for a fast random search in a compact space of hyper-parameters composed by Sequence Length and Jack-Knife Leave-N-Out.
Author: Giancarlo Vercellino
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between spooky versions 1.3.0 dated 2022-06-03 and 1.4.0 dated 2022-08-13
DESCRIPTION | 8 - MD5 | 10 - NAMESPACE | 2 NEWS.md | 4 R/main.R | 355 ++++++++++++++++++++++++++++++---------------------------- man/spooky.Rd | 3 6 files changed, 202 insertions(+), 180 deletions(-)
Title: Modelization for Functional AutoRegressive Processes
Description: Modelizations and previsions functions for
Functional AutoRegressive processes using
nonparametric methods: functional kernel,
estimation of the covariance operator in
a subspace, ...
Author: Damon Julien <julien.damon@gmail.com>
Guillas Serge
Maintainer: Damon Julien <julien.damon@gmail.com>
Diff between far versions 0.6-5 dated 2015-07-20 and 0.6-6 dated 2022-08-13
DESCRIPTION | 8 MD5 | 21 NEWS | 13 R/far.R | 1413 +++++++++++++++++++++++------------------------- R/fdata.R | 1079 ++++++++++++++++++------------------ R/kerfon.R | 329 +++++------ R/zzz.R | 52 - TODO | 14 man/simul.far.Rd | 268 ++++----- man/simul.far.wiener.Rd | 170 ++--- man/simul.farx.Rd | 398 ++++++------- src/far_init.c |only 12 files changed, 1879 insertions(+), 1886 deletions(-)
Title: Automatic Sequence Prediction by Expansion of the Distance
Matrix
Description: Each sequence is predicted by expanding the distance matrix. The compact set of hyper-parameters is tuned through random search.
Author: Giancarlo Vercellino
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between tetragon versions 1.2.0 dated 2022-06-06 and 1.3.0 dated 2022-08-13
DESCRIPTION | 9 - MD5 | 10 - NAMESPACE | 2 NEWS.md | 7 R/main.R | 438 +++++++++++++++++++++++++++++++------------------------- man/tetragon.Rd | 3 6 files changed, 269 insertions(+), 200 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.2.4 dated 2022-02-23 and 0.2.5 dated 2022-08-13
DESCRIPTION | 8 - MD5 | 20 +- NEWS.md | 130 ++++++++-------- README.md | 38 +--- build/vignette.rds |binary inst/CITATION | 21 +- inst/doc/tidyBdE.Rmd | 24 --- inst/doc/tidyBdE.html | 388 +++++++++++++++++++++++++++++++++++-------------- man/bde_indicators.Rd | 12 - man/tidyBdE-package.Rd | 2 vignettes/tidyBdE.Rmd | 24 --- 11 files changed, 397 insertions(+), 270 deletions(-)
Title: Evaluation of Surrogate Endpoints in Clinical Trials
Description: In a clinical trial, it frequently occurs that the most credible outcome to evaluate the effectiveness of a new therapy (the true endpoint) is difficult to measure. In such a situation, it can be an effective strategy to replace the true endpoint by a (bio)marker that is easier to measure and that allows for a prediction of the treatment effect on the true endpoint (a surrogate endpoint). The package 'Surrogate' allows for an evaluation of the appropriateness of a candidate surrogate endpoint based on the meta-analytic, information-theoretic, and causal-inference frameworks. Part of this software has been developed using funding provided from the European Union's Seventh Framework Programme for research, technological development and demons [...truncated...]
Author: Wim Van der Elst, Fenny Ong, Paul Meyvisch, Alvaro Florez Poveda, Ariel Alonso, Hannah M. Ensor, Christopher J. Weir & Geert Molenberghs
Maintainer: Wim Van der Elst <Wim.vanderelst@gmail.com>
Diff between Surrogate versions 2.3 dated 2022-07-08 and 2.4 dated 2022-08-13
DESCRIPTION | 6 - MD5 | 10 +- man/Schizo.Rd | 51 ++++++------ man/Schizo_BinCont.Rd | 7 - man/Schizo_PANSS.Rd | 62 +++++++-------- man/SurvSurv.Rd | 202 +++++++++++++++++++++++++------------------------- 6 files changed, 168 insertions(+), 170 deletions(-)
Title: Parallel Digital Soil Mapping using Machine Learning
Description: Parallel computing, multi-core CPU is used to efficiently compute
and process multi-dimensional soil data.This package includes the
parallelized 'Quantile Regression Forests' algorithm for Digital Soil Mapping
and is mainly dependent on the package 'quantregForest' and 'snowfall'.
Detailed references to the R package and the web site are described in the
methods, as detailed in the method documentation.
Author: Xiaodong Song [aut],
Peicong Tang [aut, cre],
Wentao Zhu [aut],
Gaoqiang Ge [aut],
Jun Zhu [aut],
Ganlin Zhang [aut]
Maintainer: Peicong Tang <peicongtang0409@163.com>
Diff between ParallelDSM versions 0.3.4 dated 2022-07-05 and 0.3.5 dated 2022-08-13
DESCRIPTION | 6 - MD5 | 14 +-- R/GetPredictorSubset.R | 3 R/InsepectionVariable.R | 2 R/ParallelInit.R | 200 +++++++++++++++++------------------------------ man/ParallelComputing.Rd | 2 man/ParallelInit.Rd | 60 ++++++++------ man/ParallelInit_Test.Rd | 44 ++++------ 8 files changed, 143 insertions(+), 188 deletions(-)
Title: Automated Classification of Mass Spectra
Description: Functions to classify mass spectra in known categories, and to determine discriminant mass-over-charge values. It includes easy-to-use functions for pre-processing mass spectra, functions to determine discriminant mass-over-charge values (m/z) from a library of mass spectra corresponding to different categories, and functions to predict the category (species, phenotypes, etc.) associated to a mass spectrum from a list of selected mass-over-charge values. Three vignettes illustrating how to use the functions of this package from real data sets are also available online to help users: <https://agodmer.github.io/MSclassifR_examples/Vignettes/Vignettemsclassifr_Ecrobiav3.html>, <https://agodmer.github.io/MSclassifR_examples/Vignettes/V [...truncated...]
Author: Alexandre Godmer [aut, cre],
Quentin Giai Gianetto [aut]
Maintainer: Alexandre Godmer <alexandre.godmer@aphp.fr>
Diff between MSclassifR versions 0.2.0 dated 2022-02-25 and 0.3.0 dated 2022-08-13
MSclassifR-0.2.0/MSclassifR/R/Predict_LogReg.R |only MSclassifR-0.2.0/MSclassifR/man/Predict_LogReg.Rd |only MSclassifR-0.3.0/MSclassifR/DESCRIPTION | 15 MSclassifR-0.3.0/MSclassifR/MD5 | 36 + MSclassifR-0.3.0/MSclassifR/NAMESPACE | 45 +- MSclassifR-0.3.0/MSclassifR/R/LogReg.R | 269 ++++++++++++-- MSclassifR-0.3.0/MSclassifR/R/PeakDetection.R | 6 MSclassifR-0.3.0/MSclassifR/R/PredictFastClass.R |only MSclassifR-0.3.0/MSclassifR/R/PredictLogReg.R |only MSclassifR-0.3.0/MSclassifR/R/SelectionVar.R | 203 ++++++++-- MSclassifR-0.3.0/MSclassifR/R/SelectionVarStat.R |only MSclassifR-0.3.0/MSclassifR/R/SignalProcessing.R | 17 MSclassifR-0.3.0/MSclassifR/build/partial.rdb |binary MSclassifR-0.3.0/MSclassifR/man/CitrobacterRKImetadata.Rd | 2 MSclassifR-0.3.0/MSclassifR/man/CitrobacterRKIspectra.Rd | 2 MSclassifR-0.3.0/MSclassifR/man/LogReg.Rd | 185 +++++++-- MSclassifR-0.3.0/MSclassifR/man/MSclassifR.Rd | 2 MSclassifR-0.3.0/MSclassifR/man/PeakDetection.Rd | 22 - MSclassifR-0.3.0/MSclassifR/man/PredictFastClass.Rd |only MSclassifR-0.3.0/MSclassifR/man/PredictLogReg.Rd |only MSclassifR-0.3.0/MSclassifR/man/SelectionVar.Rd | 112 +++-- MSclassifR-0.3.0/MSclassifR/man/SelectionVarStat.Rd |only MSclassifR-0.3.0/MSclassifR/man/SignalProcessing.Rd | 35 + 23 files changed, 719 insertions(+), 232 deletions(-)
Title: Download Map Data from GISCO API - Eurostat
Description: Tools to download data from the GISCO (Geographic Information
System of the Commission) Eurostat database
<https://ec.europa.eu/eurostat/web/gisco>. Global and European map
data available. This package is in no way officially related to or
endorsed by Eurostat.
Author: Diego Hernangomez [aut, cre, cph]
,
EuroGeographics [cph] ,
Vincent Arel-Bundock [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 0.3.1 dated 2021-10-06 and 0.3.2 dated 2022-08-13
giscoR-0.3.1/giscoR/inst/doc/giscoR.R |only giscoR-0.3.1/giscoR/vignettes/africa.png |only giscoR-0.3.1/giscoR/vignettes/asia.png |only giscoR-0.3.1/giscoR/vignettes/choro.png |only giscoR-0.3.2/giscoR/DESCRIPTION | 8 giscoR-0.3.2/giscoR/MD5 | 47 - giscoR-0.3.2/giscoR/NEWS.md | 6 giscoR-0.3.2/giscoR/R/giscoR-package.R | 70 -- giscoR-0.3.2/giscoR/README.md | 53 -- giscoR-0.3.2/giscoR/build/vignette.rds |binary giscoR-0.3.2/giscoR/data/gisco_coastallines.rda |binary giscoR-0.3.2/giscoR/data/gisco_countries.rda |binary giscoR-0.3.2/giscoR/data/gisco_countrycode.rda |binary giscoR-0.3.2/giscoR/data/gisco_db.rda |binary giscoR-0.3.2/giscoR/data/gisco_nuts.rda |binary giscoR-0.3.2/giscoR/data/tgs00026.rda |binary giscoR-0.3.2/giscoR/inst/CITATION | 21 giscoR-0.3.2/giscoR/inst/COPYRIGHTS | 10 giscoR-0.3.2/giscoR/inst/doc/giscoR.Rmd | 72 +- giscoR-0.3.2/giscoR/inst/doc/giscoR.html | 259 +++++++++- giscoR-0.3.2/giscoR/man/figures/logo.png |binary giscoR-0.3.2/giscoR/man/giscoR-package.Rd | 68 -- giscoR-0.3.2/giscoR/tests/testthat/_snaps/gisco_attributions.md | 9 giscoR-0.3.2/giscoR/tests/testthat/test-gisco_attributions.R | 5 giscoR-0.3.2/giscoR/vignettes/africa-1.png |only giscoR-0.3.2/giscoR/vignettes/country-1.png |only giscoR-0.3.2/giscoR/vignettes/giscoR-1.png |only giscoR-0.3.2/giscoR/vignettes/giscoR.Rmd | 72 +- 28 files changed, 421 insertions(+), 279 deletions(-)
Title: Surrogate-Assisted Feature Extraction
Description: Provides a model agnostic tool for white-box model trained on features extracted from a black-box model. For more information see: Gosiewska et al. (2020) <doi:10.1016/j.dss.2021.113556>.
Author: Alicja Gosiewska [aut, cre],
Anna Gierlak [aut],
Przemyslaw Biecek [aut, ths],
Michal Burdukiewicz [ctb]
Maintainer: Alicja Gosiewska <alicjagosiewska@gmail.com>
Diff between rSAFE versions 0.1.3 dated 2022-02-08 and 0.1.4 dated 2022-08-13
DESCRIPTION | 8 - MD5 | 25 +-- NEWS.md | 4 R/safe_extraction.R | 3 R/safely_detect_interactions.R | 2 R/safely_select_variables.R | 2 R/safely_transform_categorical.R | 2 R/safely_transform_continuous.R | 2 R/safely_transform_data.R | 2 build/partial.rdb |only build/vignette.rds |binary inst/doc/example_apartments.html | 264 ++++++++++++++++++++++++++++++++--- inst/doc/example_hr.html | 294 +++++++++++++++++++++++++++++++++++---- man/rSAFE-package.Rd | 4 14 files changed, 542 insertions(+), 70 deletions(-)
Title: Administrative Boundaries of Spain
Description: Administrative Boundaries of Spain at several levels
(Autonomous Communities, Provinces, Municipalities) based on the
'GISCO' 'Eurostat' database <https://ec.europa.eu/eurostat/web/gisco>
and 'CartoBase SIANE' from 'Instituto Geografico Nacional'
<https://www.ign.es/>. It also provides a 'leaflet' plugin and the
ability of downloading and processing static tiles.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between mapSpain versions 0.6.1 dated 2022-02-25 and 0.6.2 dated 2022-08-13
DESCRIPTION | 17 + MD5 | 108 ++++++------ NAMESPACE | 3 NEWS.md | 261 +++++++++++++++-------------- R/addProviderEspTiles.R | 3 R/data.R | 2 R/esp_getTiles.R | 3 R/esp_get_capimun.R | 3 R/esp_get_ccaa.R | 3 R/esp_get_comarca.R |only R/esp_get_country.R | 5 R/esp_get_prov.R | 7 R/esp_get_simplified.R |only R/layer_spatraster.R | 64 ++----- R/mapSpain-package.R | 76 -------- R/sysdata.rda |binary README.md | 18 +- build/partial.rdb |binary build/vignette.rds |binary data/esp_codelist.rda |binary data/esp_munic.sf.rda |binary data/esp_nuts.sf.rda |binary data/leaflet.providersESP.df.rda |binary data/pobmun19.rda |binary inst/CITATION | 11 + inst/WORDLIST | 272 ++++++++++++++++++++++++++++++- inst/doc/imagery.html | 1 inst/doc/mapSpain.Rmd | 14 - inst/doc/mapSpain.html | 17 + inst/examples/esp_munic_sf.R | 3 man/addProviderEspTiles.Rd | 18 -- man/esp_codelist.Rd | 6 man/esp_getTiles.Rd | 4 man/esp_get_can_box.Rd | 4 man/esp_get_capimun.Rd | 7 man/esp_get_ccaa.Rd | 16 + man/esp_get_comarca.Rd |only man/esp_get_country.Rd | 15 + man/esp_get_gridmap.Rd | 4 man/esp_get_munic.Rd | 4 man/esp_get_nuts.Rd | 4 man/esp_get_prov.Rd | 19 +- man/esp_get_simplified.Rd |only man/esp_munic.sf.Rd | 3 man/layer_spatraster.Rd | 51 +---- man/leaflet.providersESP.df.Rd | 3 man/mapSpain-package.Rd | 72 +------- tests/testthat/test-esp_getTiles.R | 6 tests/testthat/test-esp_get_comarca.R |only tests/testthat/test-esp_get_simplified.R |only tests/testthat/test-layer_spatraster.R | 20 -- vignettes/basic-1.png |binary vignettes/basic-2.png |binary vignettes/basic-3.png |binary vignettes/choro-1.png |binary vignettes/giscoR-1.png |binary vignettes/mapSpain.Rmd | 14 - vignettes/thematic-1.png |binary 58 files changed, 640 insertions(+), 521 deletions(-)
Title: A Tidy Tool for Phylogenetic Tree Data Manipulation
Description: Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
Author: Guangchuang Yu [aut, cre, cph]
,
Bradley Jones [ctb],
Zebulun Arendsee [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between tidytree versions 0.3.9 dated 2022-03-04 and 0.4.0 dated 2022-08-13
DESCRIPTION | 11 ++++++----- MD5 | 13 +++++++------ NEWS.md | 4 ++++ R/zzz.R | 3 +++ build/vignette.rds |binary inst/CITATION |only inst/doc/tidytree.html | 35 +++++++++++++++++++++++++++++------ man/reexports.Rd | 2 +- 8 files changed, 50 insertions(+), 18 deletions(-)
Title: Companion Package for the Book "Data Integration, Manipulation
and Visualization of Phylogenetic Trees" by Guangchuang Yu
(2022, ISBN:9781032233574)
Description: The companion package that provides all the datasets used in the book
"Data Integration, Manipulation and Visualization of Phylogenetic Trees" by Guangchuang Yu (2022, ISBN:9781032233574).
Author: Guangchuang Yu [aut, cre, cph]
,
Shuangbin Xu [aut] ,
Lin Li [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between TDbook versions 0.0.5 dated 2022-03-03 and 0.0.6 dated 2022-08-13
DESCRIPTION | 11 ++++++----- MD5 | 9 +++++---- R/TDbook-package.R | 5 +++-- build/partial.rdb |binary inst/CITATION |only man/TDbook-package.Rd | 4 +++- 6 files changed, 17 insertions(+), 12 deletions(-)
Title: Spectral Irradiance Data for Lamps
Description: Spectral emission data for some frequently used lamps including
bulbs and flashlights based on led emitting diodes (LEDs) but excluding
LEDs available as electronic components. Original spectral irradiance data
for incandescent-, LED- and discharge lamps are included. They are
complemented by data on the effect of temperature on the emission by
fluorescent tubes. Part of the 'r4photobiology' suite, Aphalo P. J. (2015)
<doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Lasse Ylianttila [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyLamps versions 0.5.0 dated 2022-03-11 and 0.5.1 dated 2022-08-13
DESCRIPTION | 13 +-- MD5 | 34 ++++---- NEWS.md | 6 + R/lamp-brands.r | 4 - R/macam.r | 2 R/qp-uvb313-temp.r | 2 build/partial.rdb |binary build/vignette.rds |binary data/lamps-mspct.rda |binary data/ledsavers.rda |binary data/qp-uvb313-temp-mspct.rda |binary data/qp-uvb313-temp-spct.rda |binary inst/doc/user-guide.html | 149 +++++++++++++++++++++------------------ man/lamp_brands.Rd | 4 - man/lamp_colors.Rd | 6 - man/macam_lamps.Rd | 2 man/photobiologyLamps-package.Rd | 4 - man/qp_uvb313_temp.spct.Rd | 2 18 files changed, 124 insertions(+), 104 deletions(-)
More information about photobiologyLamps at CRAN
Permanent link
Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar
energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy
Resource) data are freely available for download with varying spatial
resolutions dependent on the original data and with several temporal
resolutions depending on the POWER parameter and community. This work is
funded through the 'NASA' Earth Science Directorate Applied Science Program.
For more on the data themselves, the methodologies used in creating, a web-
based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] ,
Scott Chamberlain [rev] ,
Hazel Kavili [rev] ,
Alison Boyer [rev] ,
Fernando Miguez [ctb] ,
Maelle Salmon [ctb] ,
Phillip D. Alderman [ctb] ` must use `I` for literal data as of
vroom 1.5.0.', see https://github.com/ropens [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 4.0.7 dated 2022-04-09 and 4.0.8 dated 2022-08-13
DESCRIPTION | 8 - MD5 | 32 ++-- NEWS.md | 33 ++--- R/sysdata.rda |binary README.md | 34 ++--- build/vignette.rds |binary inst/doc/nasapower.Rmd | 39 +++--- inst/doc/nasapower.html | 187 ++++++++++++++--------------- man/nasapower-package.Rd | 4 tests/fixtures/adjusted_air_pressure.yml | 25 ++- tests/fixtures/adjusted_wind_elevation.yml | 27 ++-- tests/fixtures/climatology_ag_point.yml | 23 +-- tests/fixtures/daily_ag_point.yml | 25 ++- tests/fixtures/daily_sb_point_LST.yml | 23 +-- tests/fixtures/daily_sb_point_UTC.yml | 27 ++-- tests/fixtures/temporal_api-warning.yml | 27 ++-- vignettes/nasapower.Rmd | 39 +++--- 17 files changed, 286 insertions(+), 267 deletions(-)
Title: Intergovernmental Organizations Database
Description: Tools to extract information from the Intergovernmental
Organizations ('IGO') Database , version 3, provided by the Correlates
of War Project <https://correlatesofwar.org/>. See also Pevehouse, J.
C. et al. (2020). Version 3 includes information from 1815 to 2014.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between igoR versions 0.1.3 dated 2021-10-20 and 0.1.4 dated 2022-08-13
igoR-0.1.3/igoR/build/partial.rdb |only igoR-0.1.3/igoR/inst/pkgdown |only igoR-0.1.4/igoR/DESCRIPTION | 11 - igoR-0.1.4/igoR/MD5 | 55 ++--- igoR-0.1.4/igoR/NEWS.md | 60 +++--- igoR-0.1.4/igoR/R/data.R | 4 igoR-0.1.4/igoR/R/igo_dyadic.R | 2 igoR-0.1.4/igoR/R/sysdata.rda |binary igoR-0.1.4/igoR/README.md | 101 +++------- igoR-0.1.4/igoR/build/vignette.rds |binary igoR-0.1.4/igoR/data/igo_year_format3.rda |binary igoR-0.1.4/igoR/data/state_year_format3.rda |binary igoR-0.1.4/igoR/data/states2016.rda |binary igoR-0.1.4/igoR/inst/CITATION | 44 +--- igoR-0.1.4/igoR/inst/REFERENCES.bib |only igoR-0.1.4/igoR/inst/doc/igoR.Rmd | 15 - igoR-0.1.4/igoR/inst/doc/igoR.html | 272 +++++++++++++++++++++++++--- igoR-0.1.4/igoR/inst/doc/mapping.Rmd | 41 ++-- igoR-0.1.4/igoR/inst/doc/mapping.html | 238 ++++++++++++++++++++++-- igoR-0.1.4/igoR/man/figures/logo.png |binary igoR-0.1.4/igoR/man/igoR-package.Rd | 4 igoR-0.1.4/igoR/man/igo_dyadic.Rd | 2 igoR-0.1.4/igoR/man/igo_year_format3.Rd | 2 igoR-0.1.4/igoR/man/state_year_format3.Rd | 2 igoR-0.1.4/igoR/vignettes/AustShared-1.png |binary igoR-0.1.4/igoR/vignettes/NAShared-1.png |binary igoR-0.1.4/igoR/vignettes/UNMaps-1.png |binary igoR-0.1.4/igoR/vignettes/igoR.Rmd | 15 - igoR-0.1.4/igoR/vignettes/mapping.Rmd | 41 ++-- igoR-0.1.4/igoR/vignettes/refs_igo.bib | 95 ++------- 30 files changed, 681 insertions(+), 323 deletions(-)
Title: Estimate Hierarchical Feature Regression Models
Description: Provides functions for the estimation, plotting, predicting and cross-validation of hierarchical feature regression models as described in Pfitzinger (2021) <arXiv:2107.04831>.
Author: Johann Pfitzinger [aut, cre]
Maintainer: Johann Pfitzinger <johann.pfitzinger@gmail.com>
Diff between hfr versions 0.5.0 dated 2022-01-05 and 0.6.0 dated 2022-08-13
hfr-0.5.0/hfr/README.md |only hfr-0.6.0/hfr/DESCRIPTION | 10 +++--- hfr-0.6.0/hfr/MD5 | 45 +++++++++++++-------------- hfr-0.6.0/hfr/NAMESPACE | 4 ++ hfr-0.6.0/hfr/NEWS.md | 6 +++ hfr-0.6.0/hfr/R/cv.hfr.R | 28 +++++++++++++--- hfr-0.6.0/hfr/R/hfr.R | 26 +++++++++++++-- hfr-0.6.0/hfr/R/internal.R | 60 +++++++++++++++++++++++++++--------- hfr-0.6.0/hfr/R/plot.cv.hfr.R | 4 +- hfr-0.6.0/hfr/R/plot.hfr.R | 23 ++++++++++++- hfr-0.6.0/hfr/R/predict.cv.hfr.R | 2 - hfr-0.6.0/hfr/R/predict.hfr.R | 2 - hfr-0.6.0/hfr/R/print.cv.hfr.R | 2 - hfr-0.6.0/hfr/R/print.hfr.R | 2 - hfr-0.6.0/hfr/R/se.avg.R | 6 +-- hfr-0.6.0/hfr/man/cv.hfr.Rd | 10 ++++-- hfr-0.6.0/hfr/man/hfr.Rd | 20 ++++++++++-- hfr-0.6.0/hfr/man/plot.cv.hfr.Rd | 2 - hfr-0.6.0/hfr/man/plot.hfr.Rd | 11 +++++- hfr-0.6.0/hfr/man/predict.cv.hfr.Rd | 2 - hfr-0.6.0/hfr/man/predict.hfr.Rd | 2 - hfr-0.6.0/hfr/man/print.cv.hfr.Rd | 2 - hfr-0.6.0/hfr/man/print.hfr.Rd | 2 - hfr-0.6.0/hfr/man/se.avg.Rd | 4 +- 24 files changed, 198 insertions(+), 77 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity ('RH') are calculated from the
original data usin [...truncated...]
Author: Adam H. Sparks [aut, cre] ,
Tomislav Hengl [aut] ,
Andrew Nelson [aut] ,
Hugh Parsonage [cph, ctb] ,
Taras Kaduk [ctb] ,
Gwenael Giboire [ctb] ,
Lukasz Pawlik [ctb] ,
Ross Darnell [ctb] ,
Tyler Widdison [ctb] ` did not
return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 3.1.5 dated 2022-05-07 and 3.1.6 dated 2022-08-13
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 10 + README.md | 4 build/vignette.rds |binary inst/WORDLIST | 3 inst/doc/GSODR.Rmd | 179 +++++++++++---------- inst/doc/GSODR.html | 352 +++++++++++++++++++++---------------------- inst/extdata/isd_diff.rda |binary inst/extdata/isd_history.rda |binary man/GSODR-package.Rd | 4 vignettes/GSODR.Rmd | 179 +++++++++++---------- 12 files changed, 393 insertions(+), 368 deletions(-)
Title: An Introduction to Statistics for Geoscientists
Description: A collection of datasets and simplified functions for an introductory (geo)statistics module at University College London. Provides functionality for compositional, directional and spatial data, including ternary diagrams, Wulff and Schmidt stereonets, and ordinary kriging interpolation. Implements logistic and (additive and centred) logratio transformations. Computes vector averages and concentration parameters for the von-Mises distribution. Includes a collection of natural and synthetic fractals, and a simulator for deterministic chaos using a magnetic pendulum example. The main purpose of these functions is pedagogical. Researchers can find more complete alternatives for these tools in other packages such as 'compositions', 'robComposit [...truncated...]
Author: Pieter Vermeesch [aut, cre]
Maintainer: Pieter Vermeesch <p.vermeesch@ucl.ac.uk>
Diff between geostats versions 1.4 dated 2022-03-07 and 1.5 dated 2022-08-13
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/fractals.R | 2 +- R/transformations.R | 2 +- man/alr.Rd | 2 +- man/pendulum.Rd | 2 +- 6 files changed, 14 insertions(+), 14 deletions(-)
Title: Organize & Run Build Scripts Comfortably
Description: Working with reproducible reports or any other
similar projects often require to run the script that builds the
output file in a specified way. 'buildr' can help you organize, modify
and comfortably run those scripts. The package provides a set of
functions that interactively guides you through the process and that
are available as 'RStudio' Addin, meaning you can set up the keyboard
shortcuts, enabling you to choose and run the desired build script
with one keystroke anywhere anytime.
Author: Jan Netik [aut, cre]
Maintainer: Jan Netik <netikja@gmail.com>
Diff between buildr versions 0.1.0 dated 2021-01-10 and 0.1.1 dated 2022-08-13
DESCRIPTION | 12 MD5 | 49 +-- NAMESPACE | 70 ++--- NEWS.md | 48 ++- R/aim.R | 190 +++++++------- R/build.R | 84 +++--- R/buildr-package.R | 16 - R/edit_makefile.R | 60 ++-- R/edit_shortcuts.R | 48 +-- R/init.R | 184 +++++++------- R/utils-pipe.R | 22 - R/utils.R | 348 +++++++++++++------------- README.md | 194 +++++++-------- build/vignette.rds |binary inst/WORDLIST | 28 +- inst/doc/know_your_buildr.R | 16 - inst/doc/know_your_buildr.Rmd | 182 +++++++------- inst/doc/know_your_buildr.html | 530 +++++++++++++++++++++++++++++++---------- inst/rstudio/addins.dcf | 30 +- man/aim.Rd | 82 +++--- man/build.Rd | 80 +++--- man/buildr-package.Rd | 57 +--- man/edit_shortcuts.Rd | 54 ++-- man/figures/card.png |only man/init.Rd | 156 ++++++------ vignettes/know_your_buildr.Rmd | 182 +++++++------- 26 files changed, 1499 insertions(+), 1223 deletions(-)
More information about CalibrationCurves at CRAN
Permanent link