Title: Read Untidy Excel Files
Description: Imports non-tabular from Excel files into R. Exposes cell content,
position and formatting in a tidy structure for further manipulation.
Tokenizes Excel formulas. Supports '.xlsx' and '.xlsm' via the embedded
'RapidXML' C++ library <http://rapidxml.sourceforge.net>. Does not support
'.xlsb' or '.xls'.
Author: Duncan Garmonsway [aut, cre],
Hadley Wickham [ctb] ,
Jenny Bryan [ctb] ,
RStudio [cph] ,
Marcin Kalicinski [ctb, cph]
Maintainer: Duncan Garmonsway <nacnudus@gmail.com>
Diff between tidyxl versions 1.0.7 dated 2020-11-16 and 1.0.8 dated 2022-09-01
DESCRIPTION | 13 LICENSE |only MD5 | 50 +- NEWS.md | 13 R/xlsx_cells.R | 5 README.md | 224 ++++++------- build/vignette.rds |binary inst/doc/data-validation-rules.html | 407 ++++++++++++----------- inst/doc/smells.html | 285 +++++++++------- inst/doc/tidyxl.html | 530 ++++++++++++++++++------------- man/xlsx_cells.Rd | 5 src/RcppExports.cpp | 5 src/date.h | 1 src/xf.cpp | 8 src/xlsxbook.cpp | 77 ++-- src/xlsxbook.h | 3 src/xlsxcell.cpp | 7 src/xlsxsheet.cpp | 84 +++- src/xlsxsheet.h | 9 src/xlsxstyles.cpp | 55 ++- tests/testthat/cellStyleXfs-missing.xlsx |only tests/testthat/newEXCEL.xlsx |only tests/testthat/outlines.xlsx |only tests/testthat/test-compatibility.R | 10 tests/testthat/test-maybe_xlsx.R | 2 tests/testthat/test-outline-levels.R |only tests/testthat/test-richtext.R | 20 + tests/testthat/test-xlsx_cells.R | 6 tests/testthat/utf8-cities.xlsx |only 29 files changed, 1045 insertions(+), 774 deletions(-)
Title: Efficient Phylogenetics on Large Trees
Description: Efficient phylogenetic analyses on massive phylogenies comprising up to millions of tips. Functions include pruning, rerooting, calculation of most-recent common ancestors, calculating distances from the tree root and calculating pairwise distances. Calculation of phylogenetic signal and mean trait depth (trait conservatism), ancestral state reconstruction and hidden character prediction of discrete characters, simulating and fitting models of trait evolution, fitting and simulating diversification models, dating trees, comparing trees, and reading/writing trees in Newick format. Citation: Louca, Stilianos and Doebeli, Michael (2017) <doi:10.1093/bioinformatics/btx701>.
Author: Stilianos Louca
Maintainer: Stilianos Louca <louca@zoology.ubc.ca>
Diff between castor versions 1.7.2 dated 2022-01-08 and 1.7.3 dated 2022-09-01
DESCRIPTION | 8 - MD5 | 46 +++---- NAMESPACE | 1 R/RcppExports.R | 8 - R/auxiliary_routines.R | 101 +++++++++++++--- R/fit_bm_model.R | 30 +++- R/fit_hbd_model_on_grid.R | 12 + R/fit_hbd_pdr_on_best_grid_size.R | 4 R/fit_hbd_psr_on_best_grid_size.R | 4 R/fit_mk.R | 27 +++- R/get_independent_contrasts.R | 28 ++-- R/model_adequacy_hbd.R | 37 +++++ R/simulate_bm_model.R | 2 R/simulate_deterministic_hbd.R | 12 + R/tree_imbalance.R | 3 man/fit_bm_model.Rd | 6 man/fit_hbd_model_on_grid.Rd | 6 man/fit_mk.Rd | 4 man/get_independent_contrasts.Rd | 4 man/get_reds.Rd | 2 man/model_adequacy_hbd.Rd | 67 ++++++++++ man/tree_imbalance.Rd | 2 src/RcppExports.cpp | 31 ++++ src/phylogenetics_cpp_routines.cpp | 231 ++++++++++++++++++++++++++++--------- 24 files changed, 524 insertions(+), 152 deletions(-)
Title: Multiplier Data Envelopment Analysis and Cross Efficiency
Description: Functions are provided for calculating efficiency using multiplier DEA (Data Envelopment Analysis): Measuring the efficiency of decision making units (Charnes et al., 1978 <doi:10.1016/0377-2217(78)90138-8>) and cross efficiency using single and two-phase approach. In addition, it includes some datasets for calculating efficiency and cross efficiency.
Author: Aurobindh Kalathil Puthanpura <kalat2@pdx.edu>
Maintainer: Aurobindh Kalathil Puthanpura <kalat2@pdx.edu>
Diff between MultiplierDEA versions 0.1.18 dated 2018-04-27 and 0.1.19 dated 2022-09-01
DESCRIPTION | 11 MD5 | 28 +- NAMESPACE | 7 R/DeaMultiplierModel.r | 201 ++++++++++++++++ R/Utility.r | 529 ++++++++++++++++++++++++++++++++++++++++++- data/Data_City.rda |only data/Japanese_Companies.rda |only man/BenAndMal.Rd | 6 man/CrossEfficiency.Rd | 6 man/DEAMultiplierModel.Rd | 8 man/Data_City.Rd |only man/Japanese_Companies.Rd |only man/MPI.Rd |only man/SDEA.Rd |only man/dict.solveStatus.Rd | 8 man/options.orientation.l.Rd | 8 man/options.phase.l.Rd | 8 man/options.rts.l.Rd | 8 18 files changed, 803 insertions(+), 25 deletions(-)
Title: Semi-Automated Marketing Mix Modeling (MMM) from Meta Marketing
Science
Description: Semi-Automated Marketing Mix Modeling (MMM) aiming to reduce human bias by means of ridge regression and evolutionary algorithms, enables actionable decision making providing a budget allocation and diminishing returns curves and allows ground-truth calibration to account for causation.
Author: Gufeng Zhou [aut],
Leonel Sentana [aut],
Igor Skokan [aut],
Bernardo Lares [cre, aut],
Meta Platforms, Inc. [cph, fnd]
Maintainer: Bernardo Lares <bernardolares@fb.com>
Diff between Robyn versions 3.6.3 dated 2022-05-06 and 3.7.2 dated 2022-09-01
DESCRIPTION | 12 MD5 | 70 +- NAMESPACE | 19 R/allocator.R | 158 ++-- R/auxiliary.R | 19 R/checks.R | 397 +++++++----- R/clusters.R | 121 ++- R/convergence.R | 58 - R/data.R | 15 R/exports.R |only R/imports.R | 36 - R/inputs.R | 547 ++++++++--------- R/json.R |only R/model.R | 1316 +++++++++++++++++------------------------ R/outputs.R | 162 ++--- R/pareto.R | 481 +++++++++----- R/plots.R | 605 +++++++++++++++--- R/refresh.R | 753 ++++++++++------------- R/response.R |only R/transformation.R | 108 +-- README.md | 7 data/dt_prophet_holidays.RData |binary data/dt_simulated_weekly.RData |binary man/Robyn.Rd | 2 man/adstocks.Rd | 2 man/dt_prophet_holidays.Rd | 4 man/dt_simulated_weekly.Rd | 4 man/robyn_allocator.Rd | 35 - man/robyn_clusters.Rd | 3 man/robyn_inputs.Rd | 39 - man/robyn_onepagers.Rd | 3 man/robyn_outputs.Rd | 5 man/robyn_refresh.Rd | 61 + man/robyn_response.Rd | 77 +- man/robyn_run.Rd | 12 man/robyn_save.Rd | 32 man/robyn_write.Rd |only man/saturation_hill.Rd | 2 38 files changed, 2816 insertions(+), 2349 deletions(-)
Title: Computations over Distributed Data without Aggregation
Description: Implementing algorithms and fitting models when sites (possibly remote) share
computation summaries rather than actual data over HTTP with a master R process (using
'opencpu', for example). A stratified Cox model and a singular value decomposition are
provided. The former makes direct use of code from the R 'survival' package. (That is,
the underlying Cox model code is derived from that in the R 'survival' package.)
Sites may provide data via several means: CSV files, Redcap API, etc. An extensible
design allows for new methods to be added in the future and includes facilities
for local prototyping and testing. Web applications are provided (via 'shiny') for
the implemented methods to help in designing and deploying the computations.
Author: Balasubramanian Narasimhan [aut, cre],
Marina Bendersky [aut],
Sam Gross [aut],
Terry M. Therneau [ctb],
Thomas Lumley [ctb]
Maintainer: Balasubramanian Narasimhan <naras@stat.Stanford.EDU>
Diff between distcomp versions 1.3-2 dated 2022-07-11 and 1.3-3 dated 2022-09-01
DESCRIPTION | 8 +++--- MD5 | 24 +++++++++--------- inst/doc/prototyping.html | 24 +++++++++--------- man/CoxMaster.Rd | 35 ++++++++++++++++---------- man/CoxWorker.Rd | 35 ++++++++++++++++---------- man/HEMaster.Rd | 30 +++++++++++++---------- man/HEQueryCountMaster.Rd | 57 ++++++++++++++++++++++++------------------- man/HEQueryCountWorker.Rd | 38 ++++++++++++++++------------- man/NCP.Rd | 45 ++++++++++++++++++++-------------- man/QueryCountMaster.Rd | 35 ++++++++++++++++---------- man/QueryCountWorker.Rd | 25 +++++++++++-------- man/SVDMaster.Rd | 50 +++++++++++++++++++++++--------------- man/SVDWorker.Rd | 60 +++++++++++++++++++++++++++------------------- 13 files changed, 270 insertions(+), 196 deletions(-)
Title: Feature Extraction and Statistics for Time Series
Description: Provides a collection of features, decomposition methods,
statistical summaries and graphics functions for the analysing tidy time
series data. The package name 'feasts' is an acronym comprising of its key
features: Feature Extraction And Statistics for Time Series.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Di Cook [ctb],
Thiyanga Talagala [ctb] ,
Leanne Chhay [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between feasts versions 0.2.2 dated 2021-06-03 and 0.3.0 dated 2022-09-01
DESCRIPTION | 13 - MD5 | 48 ++-- NAMESPACE | 2 NEWS.md | 30 ++ R/acf.R | 110 ++++++++- R/features.R | 4 R/graphics.R | 91 ++++++-- R/guerrero.R | 37 ++- R/stl.R | 2 R/x13arimaseats.R | 12 - README.md | 41 +-- build/vignette.rds |binary inst/doc/feasts.html | 364 ++++++++++++++++++++++++++++----- man/ACF.Rd | 16 - man/X_13ARIMA_SEATS.Rd | 12 - man/feasts-package.Rd | 7 man/feat_spectral.Rd | 2 man/figures/README-extreme-1.png |binary man/figures/README-features-plot-1.png |binary man/figures/README-graphics-3.png |binary man/gg_season.Rd | 12 - man/scale_cf_lag.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-cf.R | 2 tests/testthat/test-graphics.R | 8 25 files changed, 644 insertions(+), 170 deletions(-)
Title: Forecasting Models for Tidy Time Series
Description: Provides a collection of commonly used univariate and multivariate
time series forecasting models including automatically selected exponential
smoothing (ETS) and autoregressive integrated moving average (ARIMA) models.
These models work within the 'fable' framework provided by the 'fabletools'
package, which provides the tools to evaluate, visualise, and combine models
in a workflow consistent with the tidyverse.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Gabriel Caceres [ctb] ,
Christoph Bergmeir [ctb] ,
Tim-Gunnar Hensel [ctb],
Timothy Hyndman [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between fable versions 0.3.1 dated 2021-05-16 and 0.3.2 dated 2022-09-01
DESCRIPTION | 13 + MD5 | 54 +++--- NEWS.md | 27 +++ R/00_specials.R | 2 R/ar.R | 2 R/arima.R | 224 +++++++++++++++++++------ R/ets.R | 4 R/etsmodel.R | 17 + R/lagwalk.R | 3 R/lm.R | 38 +--- R/var.R | 7 README.md | 7 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/fable.html | 368 ++++++++++++++++++++++++++++++++++++------ inst/doc/transformations.html | 286 ++++++++++++++++++++++++++++++-- man/AR.Rd | 2 man/TSLM.Rd | 2 man/VAR.Rd | 2 man/common_xregs.Rd | 2 man/fable-package.Rd | 10 - man/forecast.TSLM.Rd | 7 man/glance.ARIMA.Rd | 16 + src/etsTargetFunction.cpp | 2 tests/testthat/test-arima.R | 2 tests/testthat/test-nnetar.R | 4 tests/testthat/test-rw.R | 7 28 files changed, 894 insertions(+), 216 deletions(-)
Title: Curriculum Vitae for R Markdown
Description: Provides templates and functions to simplify the production and maintenance of curriculum vitae.
Author: Mitchell O'Hara-Wild [aut, cre]
,
Rob Hyndman [aut] ,
Yihui Xie [ctb] ,
Albert Krewinkel [cph] ,
JooYoung Seo [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vitae versions 0.5.1 dated 2021-12-06 and 0.5.2 dated 2022-09-01
DESCRIPTION | 8 MD5 | 28 NEWS.md | 9 R/awesomecv.R | 5 README.md | 40 - build/vignette.rds |binary inst/doc/data.html | 281 ++++++++- inst/doc/extending.Rmd | 2 inst/doc/extending.html | 341 ++++++++++- inst/doc/vitae.html | 367 ++++++++++-- inst/rmarkdown/templates/awesomecv/resources/awesome-cv.tex | 8 inst/rmarkdown/templates/latexcv/resources/classic/main.tex | 6 man/awesomecv.Rd | 9 man/vitae-package.Rd | 2 vignettes/extending.Rmd | 2 15 files changed, 959 insertions(+), 149 deletions(-)
Title: Phylogenetic Tools for Comparative Biology (and Other Things)
Description: A wide range of functions for phylogenetic analysis - concentrated in phylogenetic comparative biology, but also including numerous methods for visualizing, manipulating, reading or writing, and even inferring phylogenetic trees. Included among the functions in phylogenetic comparative biology are various for ancestral state reconstruction, model-fitting, and simulation of phylogenies and data, for continuous, discrete, and multivariate characters. A broad range of plotting methods for phylogenies and comparative data include, but are not restricted to, methods for mapping trait evolution on trees, for projecting trees into phenotypic space or a geographic map, and for visualizing correlated speciation between trees. Finally, numerous functions are designed for reading, writing, analyzing, inferring, simulating, and manipulating phylogenetic trees and comparative data. For instance, there are functions for randomly or non-randomly attaching species or clades to a phylogeny, for computi [...truncated...]
Author: Liam J. Revell
Maintainer: Liam J. Revell <liam.revell@umb.edu>
Diff between phytools versions 1.0-3 dated 2022-04-05 and 1.2-0 dated 2022-09-01
DESCRIPTION | 12 +- MD5 | 39 +++---- NAMESPACE | 28 ++++- R/bd.R | 21 +++- R/bmPlot.R | 19 ++- R/evolvcv.lite.R | 129 ++++++++++++++++++------- R/fitMk.R | 148 +++++++++++++++++++++-------- R/fitMk.parallel.R |only R/fitPagel.R | 30 +++++ R/fitpolyMk.R | 20 +++ R/ltt.R | 248 +++++++++++++++++++++++++++++++++++++++++++++++-- R/make.simmap.R | 72 ++++++++++---- R/phylo.to.map.R | 18 +-- R/phylomorphospace3d.R | 2 R/roundPhylogram.R | 119 +++++++++++++++++++++++ R/utilities.R | 10 - man/cladelabels.Rd | 3 man/fit.bd.Rd | 2 man/fitMk.Rd | 3 man/ltt.Rd | 10 + man/roundPhylogram.Rd | 11 +- 21 files changed, 785 insertions(+), 159 deletions(-)
Title: Diverse Datasets for 'tsibble'
Description: Provides diverse datasets in the 'tsibble' data structure. These datasets are useful for learning and demonstrating how tidy temporal data can tidied, visualised, and forecasted.
Author: Mitchell O'Hara-Wild [aut, cre],
Rob Hyndman [aut],
Earo Wang [aut],
Rakshitha Godahewa [aut],
Christoph Bergmeir [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between tsibbledata versions 0.4.0 dated 2022-01-07 and 0.4.1 dated 2022-09-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 5 +++++ R/data.R | 6 +++--- R/forecastingdata_org.R | 9 +++++++++ README.md | 3 ++- man/tsibbledata-package.Rd | 2 +- man/vic_elec.Rd | 6 +++--- 8 files changed, 35 insertions(+), 20 deletions(-)
Title: Estimate Functional and Stochastic Parameters of Linear Models
with Correlated Residuals
Description: Implements the Generalized Method of Wavelet Moments with Exogenous Inputs estimator (GMWMX) presented in Cucci, D. A., Voirol, L., Kermarrec, G., Montillet, J. P., and Guerrier, S. (2022) <arXiv:2206.09668>.
The GMWMX estimator allows to estimate functional and stochastic parameters of linear models with correlated residuals.
The 'gmwmx' package provides functions to estimate, compare and analyze models, utilities to load and work with Global Navigation Satellite System (GNSS) data as well as methods to compare results with the Maximum Likelihood Estimator (MLE) implemented in Hector.
Author: Davide Antonio Cucci [aut],
Lionel Voirol [aut, cre],
Stephane Guerrier [aut],
Jean-Philippe Montillet [ctb],
Gael Kermarrec [ctb]
Maintainer: Lionel Voirol <lionelvoirol@hotmail.com>
Diff between gmwmx versions 1.0.1 dated 2022-08-22 and 1.0.2 dated 2022-09-01
DESCRIPTION | 8 +-- MD5 | 30 +++++++------- NAMESPACE | 4 + NEWS.md | 7 +++ R/gen_model.R | 1 R/gmwmx.R | 58 ++++++++++++++++++++++++--- R/hector.R | 54 ++++++++++++------------- R/print.R | 6 +- R/utils.R | 1 README.md | 6 +- inst/doc/load_estimate_compare_models.Rmd | 4 - inst/doc/load_estimate_compare_models.html | 18 ++++---- inst/doc/simulate_data.html | 62 ++++++++++++++--------------- man/estimate_hector.Rd | 12 ++++- man/remove_outliers_hector.Rd | 2 vignettes/load_estimate_compare_models.Rmd | 4 - 16 files changed, 174 insertions(+), 103 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 1.7.1 dated 2022-08-16 and 1.7.3 dated 2022-09-01
tidyfst-1.7.1/tidyfst/R/topn_dt.R |only tidyfst-1.7.1/tidyfst/man/topn.Rd |only tidyfst-1.7.1/tidyfst/tests/testthat/test-topn_dt.R |only tidyfst-1.7.3/tidyfst/DESCRIPTION | 6 tidyfst-1.7.3/tidyfst/MD5 | 27 +-- tidyfst-1.7.3/tidyfst/NAMESPACE | 3 tidyfst-1.7.3/tidyfst/R/slice.R | 136 ++++++++++----- tidyfst-1.7.3/tidyfst/build/vignette.rds |binary tidyfst-1.7.3/tidyfst/inst/doc/benchmark.html | 76 ++++---- tidyfst-1.7.3/tidyfst/inst/doc/chinese_tutorial.html | 70 +++---- tidyfst-1.7.3/tidyfst/inst/doc/english_tutorial.R | 2 tidyfst-1.7.3/tidyfst/inst/doc/english_tutorial.Rmd | 2 tidyfst-1.7.3/tidyfst/inst/doc/english_tutorial.html | 2 tidyfst-1.7.3/tidyfst/inst/doc/example2_join.html | 10 - tidyfst-1.7.3/tidyfst/inst/doc/example3_reshape.html | 167 +++++++++---------- tidyfst-1.7.3/tidyfst/vignettes/english_tutorial.Rmd | 2 16 files changed, 270 insertions(+), 233 deletions(-)
Title: Economics and Pricing Tools
Description: Functions to aid in micro and macro economic analysis and handling of price and
currency data. Includes extraction of relevant inflation and exchange rate data from World Bank
API, data cleaning/parsing, and standardisation. Inflation adjustment
calculations as found in Principles of Macroeconomics by Gregory Mankiw et al (2014). Current
and historical end of day exchange rates for 171 currencies from the European Central Bank
Statistical Data Warehouse (2020) <https://sdw.ecb.europa.eu/curConverter.do>.
Author: Steve Condylios [aut, cre]
Maintainer: Steve Condylios <steve.condylios@gmail.com>
Diff between priceR versions 0.1.62 dated 2022-06-30 and 0.1.64 dated 2022-09-01
DESCRIPTION | 7 +- MD5 | 12 ++- NAMESPACE | 1 R/currencies.R | 87 ++++++++++++++++++++++++---- README.md | 119 ++++++++++++++++++++++++--------------- data |only man/currency_info.Rd |only man/historical_exchange_rates.Rd | 17 ++--- 8 files changed, 169 insertions(+), 74 deletions(-)
Title: Explore and Visualize Your Data Interactively
Description: A 'shiny' gadget to create 'ggplot2' figures interactively with drag-and-drop to map your variables to different aesthetics.
You can quickly visualize your data accordingly to their type, export in various formats,
and retrieve the code to reproduce the plot.
Author: Fanny Meyer [aut],
Victor Perrier [aut, cre],
Ian Carroll [ctb] ,
Xiangnan Dang [ctb] ,
Nicolas Bevacqua [cph] ,
Daybrush [cph] ,
Zeno Rocha [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between esquisse versions 1.1.1 dated 2022-05-03 and 1.1.2 dated 2022-09-01
DESCRIPTION | 8 LICENSE | 138 MD5 | 207 NAMESPACE | 416 - NEWS.md | 335 - R/default-options.R | 390 - R/deprecated.R | 2836 +++++----- R/esquisse-package.R | 90 R/esquisse-server.R | 746 +- R/esquisse-ui.R | 354 - R/esquisser.R | 183 R/esquisserServer.R | 656 +- R/esquisserUI.R | 290 - R/export.R | 896 +-- R/geometries.R | 430 - R/get_data.R | 166 R/ggcall.R | 326 - R/ggplot_to_ppt.R | 348 - R/input-colors.R | 864 +-- R/input-dragula.R | 822 +- R/input-drop.R | 458 - R/mapping.R | 186 R/module-controls.R | 2066 +++---- R/onLoad.R | 36 R/safe_ggplot.R | 110 R/scales.R | 496 - R/settings.R | 108 R/utils-shiny.R | 310 - R/utils.R | 834 +- R/zzz.R | 4 README.md | 165 build/vignette.rds |binary inst/assets/clipboard/LICENSE | 16 inst/assets/clipboard/clipboard.min.js | 12 inst/assets/dragula/dragula-bindings.js | 360 - inst/assets/dragula/styles-dad.css | 224 inst/assets/drop/dropInput-bindings.js | 154 inst/assets/esquisse/css/annie-use-your-telescope.css | 24 inst/assets/esquisse/css/styles.css | 475 - inst/assets/esquisse/fonts/annie-use-your-telescope-v11-latin-regular.svg | 1024 +-- inst/assets/esquisse/js/shiny-utils.js | 104 inst/assets/moveable/moveable.min.js | 20 inst/assets/moveable/resizer-handler.js | 176 inst/doc/get-started.R | 56 inst/doc/get-started.Rmd | 340 - inst/doc/get-started.html | 719 +- inst/doc/shiny-usage.R | 456 - inst/doc/shiny-usage.Rmd | 646 +- inst/doc/shiny-usage.html | 1041 ++- inst/geomIcon/app.R | 80 inst/geomIcon/iconGeom.R | 528 - inst/i18n/al.csv | 175 inst/i18n/cn.csv |only inst/i18n/es.csv | 279 inst/i18n/fr.csv | 175 inst/i18n/it.csv |only inst/i18n/kr.csv |only inst/i18n/mk.csv | 177 inst/i18n/pt.csv | 173 inst/i18n/tr.csv |only inst/i18n/ur.csv |only inst/rstudio/addins.dcf | 20 man/build_aes.Rd | 88 man/dragulaInput.Rd | 348 - man/esquisse-deprecated.Rd | 34 man/esquisse-exports.Rd | 22 man/esquisse-module.Rd | 406 - man/esquisse.Rd | 48 man/esquisser.Rd | 104 man/figures/i18n/al.svg | 10 man/figures/i18n/br.svg | 90 man/figures/i18n/cn.svg |only man/figures/i18n/es.svg |only man/figures/i18n/fr.svg | 14 man/figures/i18n/gb.svg | 14 man/figures/i18n/kr.svg |only man/figures/i18n/mk.svg | 10 man/figures/i18n/pt.svg | 114 man/figures/i18n/tr.svg |only man/ggcall.Rd | 268 man/ggplot-output.Rd | 198 man/input-colors.Rd | 608 +- man/module-chooseData.Rd | 128 man/module-coerce.Rd | 64 man/module-esquisse.Rd | 138 man/module-filterDF.Rd | 112 man/run_module.Rd | 28 man/safe_ggplot.Rd | 112 man/save-ggplot-module.Rd | 140 man/updateDragulaInput.Rd | 216 man/which_pal_scale.Rd | 132 tests/testthat.R | 8 tests/testthat/test-create_filters.R | 94 tests/testthat/test-geoms.R | 122 tests/testthat/test-get-data.R | 72 tests/testthat/test-ggcall.R | 78 tests/testthat/test-mapping.R | 36 tests/testthat/test-safe_ggplot.R | 100 tests/testthat/test-scales.R | 64 tests/testthat/test-shiny-UI.R | 52 tests/testthat/test-utils.R | 200 vignettes/figures/i18n/al.svg | 10 vignettes/figures/i18n/br.svg | 90 vignettes/figures/i18n/fr.svg | 14 vignettes/figures/i18n/gb.svg | 14 vignettes/figures/i18n/mk.svg | 10 vignettes/figures/i18n/pt.svg | 114 vignettes/get-started.Rmd | 340 - vignettes/shiny-usage.Rmd | 646 +- 109 files changed, 14375 insertions(+), 13863 deletions(-)
Title: Modules to Import and Manipulate Data in 'Shiny'
Description: 'Shiny' modules to import data into an application or 'addin'
from various sources, and to manipulate them after that.
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
Zauad Shahreer Abeer [aut],
Eduard Szoecs [ctb]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between datamods versions 1.3.3 dated 2022-07-13 and 1.3.4 dated 2022-09-01
DESCRIPTION | 8 ++++---- MD5 | 31 ++++++++++++++++++------------- NEWS.md | 7 +++++++ R/filter-data.R | 4 +++- R/i18n.R | 9 +++++++-- R/import-modal.R | 15 +++++++++++---- README.md | 6 +++++- build/vignette.rds |binary inst/doc/i18n.R | 6 ++++++ inst/doc/i18n.Rmd | 12 ++++++++++++ inst/doc/i18n.html | 30 ++++++++++++++++++++---------- inst/i18n/kr.csv |only man/figures/i18n/kr.svg |only man/figures/i18n/tr.svg |only man/import-modal.Rd | 18 ++++++++++++++++-- tests/testthat/test-i18n.R | 2 +- vignettes/figures/i18n/kr.svg |only vignettes/figures/i18n/tr.svg |only vignettes/i18n.Rmd | 12 ++++++++++++ 19 files changed, 122 insertions(+), 38 deletions(-)
Title: Multi-Criteria Method for Decision (TOPSIS)
Description: Assists in the TOPSIS analysis process, designed to return at the end of the answer of the TOPSIS multicriteria analysis, a ranking table with the best option as the analysis proposes. TOPSIS is basically a technique developed by Hwang and Yoon in 1981, starting from the point that the best alternative should be closest to the positive ideal solution and farthest from the negative one, based on several criteria to result in the best benefit. (LIU, H. et al., 2019) <doi:10.1016/j.agwat.2019.105787>.
Author: Wagner Martins dos Santos [aut, cre]
Maintainer: Wagner Martins dos Santos <wagnnerms97@gmail.com>
Diff between TopSisWM versions 1.0.1 dated 2022-05-04 and 1.0.2 dated 2022-09-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/TopSisWM.R | 14 ++++++++++---- 3 files changed, 16 insertions(+), 10 deletions(-)
Title: Inference, Aggregation and Visualization for Top-K Ranked Lists
Description: For multiple ranked input lists (full or partial) representing the same set of N objects, the package 'TopKLists' <doi:10.1515/sagmb-2014-0093> offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results. Note that RGtk2 and gWidgets2RGtk2 have been archived on CRAN. See <https://github.com/pievos101/TopKLists> for installation instructions.
Author: Michael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin, Bastian Pfeifer
Maintainer: Bastian Pfeifer <bastian.pfeifer@medunigraz.at>
Diff between TopKLists versions 1.0.7 dated 2020-05-29 and 1.0.8 dated 2022-09-01
TopKLists-1.0.7/TopKLists/inst/CITATION |only TopKLists-1.0.8/TopKLists/DESCRIPTION | 14 +++++++------- TopKLists-1.0.8/TopKLists/MD5 | 14 +++++++------- TopKLists-1.0.8/TopKLists/README.md |only TopKLists-1.0.8/TopKLists/build/vignette.rds |binary TopKLists-1.0.8/TopKLists/inst/doc/TopKLists.pdf |binary TopKLists-1.0.8/TopKLists/man/TopKListsGUI.Rd | 2 +- TopKLists-1.0.8/TopKLists/man/aggmap.Rd | 2 +- TopKLists-1.0.8/TopKLists/man/breast.Rd | 6 +++--- 9 files changed, 19 insertions(+), 19 deletions(-)
Title: A Wrapper of the 'react-select' Library
Description: Provides a select control widget for 'Shiny'. It is easily
customizable, and one can easily use HTML in the items and KaTeX to
type mathematics.
Author: Stephane Laurent [aut, cre],
Jed Watson [cph] ,
Clauderic Demers [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between shinySelect versions 1.0.0 dated 2021-11-17 and 1.1.0 dated 2022-09-01
DESCRIPTION | 29 MD5 | 19 NEWS.md | 7 R/selectControl.R | 52 README.md | 4 inst/www/shinySelect/selectControl/selectControl.js |18477 ---------- inst/www/shinySelect/selectControl/selectControl.js.LICENSE.txt |only inst/www/shinySelect/selectControl/selectControl.js.map | 2 man/katex.Rd | 2 man/selectControlInput.Rd | 5 man/updateSelectControlInput.Rd | 17 11 files changed, 59 insertions(+), 18555 deletions(-)
Title: Project MOSAIC Data Sets
Description: Data sets from Project MOSAIC (<http://www.mosaic-web.org>) used
to teach mathematics, statistics, computation and modeling. Funded by the
NSF, Project MOSAIC is a community of educators working to tie together
aspects of quantitative work that students in science, technology,
engineering and mathematics will need in their professional lives, but
which are usually taught in isolation, if at all.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel Kaplan
<kaplan@macalester.edu>, Nicholas Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicData versions 0.20.2 dated 2021-01-16 and 0.20.3 dated 2022-09-01
mosaicData-0.20.2/mosaicData/man/Births2015.Rd |only mosaicData-0.20.2/mosaicData/man/Births78.Rd |only mosaicData-0.20.3/mosaicData/DESCRIPTION | 8 mosaicData-0.20.3/mosaicData/MD5 | 20 +- mosaicData-0.20.3/mosaicData/R/BirthsDoc.R | 171 +++++++++------------ mosaicData-0.20.3/mosaicData/R/SaratogaHousesDoc.R | 4 mosaicData-0.20.3/mosaicData/data/BirthsCDC.rda |only mosaicData-0.20.3/mosaicData/data/BirthsSSA.rda |only mosaicData-0.20.3/mosaicData/data/Marriage.rda |binary mosaicData-0.20.3/mosaicData/man/Birthdays.Rd | 8 mosaicData-0.20.3/mosaicData/man/Births.Rd | 81 ++++++++- mosaicData-0.20.3/mosaicData/man/HELPrct.Rd | 4 mosaicData-0.20.3/mosaicData/man/SaratogaHouses.Rd | 2 13 files changed, 175 insertions(+), 123 deletions(-)
Title: Fixed Rank Kriging
Description: Fixed Rank Kriging is a tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of r basis functions, where r is typically much smaller than the number of data points (or polygons) m. This low-rank basis-function representation facilitates the modelling of 'big' spatial/spatio-temporal data. The method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above of the package `FRK` also supports modelling of non-Gaus [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.0.5 dated 2022-03-25 and 2.0.6 dated 2022-09-01
DESCRIPTION | 10 +++++----- MD5 | 31 ++++++++++++++++--------------- R/SRE.R | 11 +++++++---- R/SREpredict.R | 6 ++++-- R/geometryfns.R | 2 +- build/vignette.rds |binary data/AIRS_05_2003.rda |binary data/Am_data.rda |binary data/MODIS_cloud_df.rda |binary data/NOAA_df_1990.rda |binary data/datalist |only data/isea3h.rda |binary data/worldmap.rda |binary inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary man/SRE.Rd | 11 +++++++---- tests/testthat/test_linalg.R | 6 +++--- 17 files changed, 43 insertions(+), 34 deletions(-)
Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in ab [...truncated...]
Author: Andri Signorell [aut, cre],
Ken Aho [ctb],
Andreas Alfons [ctb],
Nanina Anderegg [ctb],
Tomas Aragon [ctb],
Chandima Arachchige [ctb],
Antti Arppe [ctb],
Adrian Baddeley [ctb],
Kamil Barton [ctb],
Ben Bolker [ctb],
Hans W. Borchers [ctb],
Frederico C [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between DescTools versions 0.99.45 dated 2022-05-10 and 0.99.46 dated 2022-09-01
DESCRIPTION | 10 +-- MD5 | 18 +++--- NAMESPACE | 3 + NEWS | 27 ++++++++- R/DescTools.r | 89 +++++++++++++++++++++++++---- R/Tests.r | 155 ++++++++++++++++++++++++++++------------------------ build/vignette.rds |binary man/BinomRatioCI.rd | 2 man/StdCoef.Rd | 6 +- man/Vigenere.Rd | 2 10 files changed, 208 insertions(+), 104 deletions(-)
Title: Useful Wrappers Around Commonly Used Functions
Description: The main functionalities of 'wrappedtools' are:
adding backticks to variable names; rounding to desired precision
with special case for p-values;
selecting columns based on pattern and storing their position, name,
and backticked name; computing and formatting of descriptive statistics
(e.g. mean±SD), comparing groups and creating publication-ready tables with
descriptive statistics and p-values; creating specialized plots for
correlation matrices. Functions were mainly written for my own daily work or
teaching, but may be of use to others as well.
Author: Andreas Busjahn [cre, aut] ,
Bilal Asser [aut]
Maintainer: Andreas Busjahn <andreas@busjahn.net>
Diff between wrappedtools versions 0.7.9 dated 2021-09-06 and 0.8.0 dated 2022-09-01
DESCRIPTION | 25 +- MD5 | 111 ++++++++--- NAMESPACE | 149 +++++++------- NEWS.md | 14 + R/basefunctions.R | 79 ++++++- R/descriptives.R | 155 ++++++++------- R/plots.R | 15 - R/tests.R | 190 ++++++++++-------- R/wrappedtools-package.R |only README.md | 22 -- build/vignette.rds |binary inst/doc/wrappedtools.Rmd | 2 inst/doc/wrappedtools.html | 282 ++++++++++++++++++++++++---- man/FindVars.Rd | 11 - man/cat_desc_stats.Rd | 9 man/compare_n_numvars.Rd | 23 +- man/compare_n_qualvars.Rd | 6 man/figures |only man/formatP.Rd | 11 - man/ggcormat.Rd | 9 man/glmCI.Rd | 2 man/logrange_1.Rd | 2 man/median_cl_boot.Rd | 2 man/medianse.Rd |only man/pairwise_fisher_test.Rd | 2 man/pairwise_t_test.Rd | 2 man/pairwise_wilcox_test.Rd | 2 man/print_kable.Rd | 10 man/se_median.Rd | 9 man/surprisal.Rd |only man/wrappedtools-package.Rd |only tests/testthat/FindVars_out.rda |only tests/testthat/SEM_out.rda |only tests/testthat/cat_desc_stats_out.rda |only tests/testthat/compare2numvars_out.rda |only tests/testthat/compare2qualvars_out.rda |only tests/testthat/compare_n_qualvars_out.rda |only tests/testthat/cortestR_out.rda |only tests/testthat/formatP_out.rda |only tests/testthat/glmCI_out.rda |only tests/testthat/ksnormal_out.rda |only tests/testthat/meansdout.rda |only tests/testthat/meanseout.rda |only tests/testthat/median_cl_bootout.rda |only tests/testthat/medianquart.rda |only tests/testthat/n_numvars_out.rda |only tests/testthat/pairwise_fisher_out.rda |only tests/testthat/pairwise_ordcat_testout.rda |only tests/testthat/pairwise_t_test_out.rda |only tests/testthat/pairwise_wilcox_test_out.rda |only tests/testthat/t_var_test_out.rda |only tests/testthat/test-FindVars.R |only tests/testthat/test-SEM.R |only tests/testthat/test-cat_desc_stats.R |only tests/testthat/test-compare2qualvars.R |only tests/testthat/test-compare_2_numvars.R |only tests/testthat/test-compare_n_numvars.R |only tests/testthat/test-compare_n_qualvars.R |only tests/testthat/test-cortestR.R |only tests/testthat/test-formatP.R |only tests/testthat/test-glm_CI.R |only tests/testthat/test-ksnormal.R |only tests/testthat/test-logrange.R |only tests/testthat/test-markSign.R |only tests/testthat/test-meansd.R |only tests/testthat/test-meanse.R |only tests/testthat/test-median_cl_boot.R |only tests/testthat/test-median_quart.R |only tests/testthat/test-medianse.R |only tests/testthat/test-pairwise_fisher-test.R |only tests/testthat/test-pairwise_ordcat_test.R |only tests/testthat/test-pairwise_t_test.R |only tests/testthat/test-pairwise_wilcox_test.R |only tests/testthat/test-roundR.R | 1 tests/testthat/test-t_var_test.R |only tests/testthat/test-var_coeff.R |only tests/testthat/var_coeff_out.rda |only vignettes/wrappedtools.Rmd | 2 78 files changed, 787 insertions(+), 360 deletions(-)
Title: Portable Native and Joint Stack Traces
Description: Obtain the native stack trace and fuse it with R's
stack trace for easier debugging of R packages with native code.
Author: Kirill Mueller [aut, cre] ,
R Consortium [fnd],
Ian Lance Taylor [aut] ,
Free Software Foundation [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between winch versions 0.0.8 dated 2022-03-16 and 0.0.9 dated 2022-09-01
DESCRIPTION | 14 MD5 | 12 NEWS.md | 7 build/vignette.rds |binary inst/doc/report.html | 616 ++++++++++++++++++++++++++++------- man/winch-package.Rd | 2 tests/testthat/test-add_trace_back.R | 2 7 files changed, 517 insertions(+), 136 deletions(-)
Title: Interface to 'TensorFlow Probability'
Description: Interface to 'TensorFlow Probability', a 'Python' library built on 'TensorFlow'
that makes it easy to combine probabilistic models and deep learning on modern hardware ('TPU', 'GPU').
'TensorFlow Probability' includes a wide selection of probability distributions and bijectors, probabilistic layers,
variational inference, Markov chain Monte Carlo, and optimizers such as Nelder-Mead, BFGS, and SGLD.
Author: Tomasz Kalinowski [ctb, cre],
Sigrid Keydana [aut],
Daniel Falbel [ctb],
Kevin Kuo [ctb] ,
RStudio [cph]
Maintainer: Tomasz Kalinowski <tomasz.kalinowski@rstudio.com>
Diff between tfprobability versions 0.15.0 dated 2022-02-02 and 0.15.1 dated 2022-09-01
DESCRIPTION | 8 MD5 | 294 ++++++++--------- NEWS.md | 4 R/distributions.R | 2 README.md | 39 ++ build/vignette.rds |binary inst/doc/hamiltonian_monte_carlo.html | 18 - inst/doc/layer_dense_variational.html | 18 - man/install_tfprobability.Rd | 7 man/layer_autoregressive_transform.Rd | 6 man/layer_conv_1d_flipout.Rd | 6 man/layer_conv_1d_reparameterization.Rd | 6 man/layer_conv_2d_flipout.Rd | 6 man/layer_conv_2d_reparameterization.Rd | 6 man/layer_conv_3d_flipout.Rd | 6 man/layer_conv_3d_reparameterization.Rd | 6 man/layer_dense_flipout.Rd | 6 man/layer_dense_local_reparameterization.Rd | 6 man/layer_dense_reparameterization.Rd | 6 man/layer_dense_variational.Rd | 4 man/mcmc_metropolis_hastings.Rd | 12 man/sts_additive_state_space_model.Rd | 36 +- man/sts_autoregressive.Rd | 6 man/sts_autoregressive_state_space_model.Rd | 22 - man/sts_constrained_seasonal_state_space_model.Rd | 6 man/sts_dynamic_linear_regression_state_space_model.Rd | 12 man/sts_linear_regression.Rd | 6 man/sts_local_level.Rd | 6 man/sts_local_level_state_space_model.Rd | 18 - man/sts_local_linear_trend.Rd | 6 man/sts_local_linear_trend_state_space_model.Rd | 18 - man/sts_seasonal.Rd | 4 man/sts_seasonal_state_space_model.Rd | 18 - man/sts_semi_local_linear_trend.Rd | 10 man/sts_semi_local_linear_trend_state_space_model.Rd | 18 - man/sts_smooth_seasonal.Rd | 10 man/sts_smooth_seasonal_state_space_model.Rd | 24 - man/sts_sparse_linear_regression.Rd | 16 man/tfb_correlation_cholesky.Rd | 12 man/tfb_ffjord.Rd | 20 - man/tfb_glow.Rd | 16 man/tfb_gompertz_cdf.Rd | 6 man/tfb_gumbel_cdf.Rd | 4 man/tfb_masked_autoregressive_flow.Rd | 12 man/tfb_rational_quadratic_spline.Rd | 6 man/tfb_rayleigh_cdf.Rd | 6 man/tfb_scale.Rd | 6 man/tfb_scale_matvec_diag.Rd | 6 man/tfb_shifted_gompertz_cdf.Rd | 6 man/tfb_softplus.Rd | 6 man/tfb_weibull_cdf.Rd | 6 man/tfd_autoregressive.Rd | 12 man/tfd_bates.Rd | 10 man/tfd_beta.Rd | 12 man/tfd_beta_binomial.Rd | 6 man/tfd_binomial.Rd | 6 man/tfd_categorical.Rd | 6 man/tfd_cauchy.Rd | 12 man/tfd_chi.Rd | 6 man/tfd_chi2.Rd | 10 man/tfd_continuous_bernoulli.Rd | 6 man/tfd_deterministic.Rd | 6 man/tfd_dirichlet.Rd | 18 - man/tfd_dirichlet_multinomial.Rd | 6 man/tfd_doublesided_maxwell.Rd | 12 man/tfd_empirical.Rd | 6 man/tfd_exp_gamma.Rd | 12 man/tfd_exp_inverse_gamma.Rd | 12 man/tfd_exponential.Rd | 18 - man/tfd_gamma.Rd | 18 - man/tfd_gamma_gamma.Rd | 12 man/tfd_gaussian_process.Rd | 18 - man/tfd_generalized_normal.Rd | 6 man/tfd_generalized_pareto.Rd | 18 - man/tfd_geometric.Rd | 6 man/tfd_gumbel.Rd | 12 man/tfd_half_cauchy.Rd | 6 man/tfd_half_normal.Rd | 12 man/tfd_horseshoe.Rd | 6 man/tfd_independent.Rd | 6 man/tfd_inverse_gamma.Rd | 24 - man/tfd_inverse_gaussian.Rd | 6 man/tfd_johnson_s_u.Rd | 12 man/tfd_joint_distribution_named.Rd | 6 man/tfd_joint_distribution_named_auto_batched.Rd | 12 man/tfd_joint_distribution_sequential.Rd | 6 man/tfd_joint_distribution_sequential_auto_batched.Rd | 12 man/tfd_kumaraswamy.Rd | 6 man/tfd_laplace.Rd | 12 man/tfd_linear_gaussian_state_space_model.Rd | 12 man/tfd_logistic.Rd | 12 man/tfd_multinomial.Rd | 6 man/tfd_multivariate_normal_diag.Rd | 18 - man/tfd_multivariate_normal_diag_plus_low_rank.Rd | 18 - man/tfd_multivariate_normal_full_covariance.Rd | 12 man/tfd_multivariate_normal_linear_operator.Rd | 12 man/tfd_multivariate_normal_tri_l.Rd | 18 - man/tfd_multivariate_student_t_linear_operator.Rd | 12 man/tfd_negative_binomial.Rd | 6 man/tfd_normal.Rd | 12 man/tfd_pareto.Rd | 6 man/tfd_pert.Rd | 12 man/tfd_plackett_luce.Rd | 18 - man/tfd_poisson.Rd | 6 man/tfd_poisson_log_normal_quadrature_compound.Rd | 12 man/tfd_power_spherical.Rd | 6 man/tfd_probit_bernoulli.Rd | 6 man/tfd_quantized.Rd | 22 - man/tfd_sample_distribution.Rd | 6 man/tfd_sinh_arcsinh.Rd | 12 man/tfd_skellam.Rd | 12 man/tfd_spherical_uniform.Rd | 6 man/tfd_student_t.Rd | 12 man/tfd_student_t_process.Rd | 12 man/tfd_truncated_cauchy.Rd | 6 man/tfd_truncated_normal.Rd | 6 man/tfd_uniform.Rd | 6 man/tfd_variational_gaussian_process.Rd | 48 +- man/tfd_vector_exponential_diag.Rd | 12 man/tfd_vector_exponential_linear_operator.Rd | 12 man/tfd_vector_laplace_diag.Rd | 12 man/tfd_vector_laplace_linear_operator.Rd | 12 man/tfd_vector_sinh_arcsinh_diag.Rd | 12 man/tfd_von_mises.Rd | 6 man/tfd_von_mises_fisher.Rd | 6 man/tfd_weibull.Rd | 22 - man/tfd_wishart.Rd | 6 man/tfd_wishart_linear_operator.Rd | 6 man/tfd_wishart_tri_l.Rd | 6 man/tfd_zipf.Rd | 6 man/vi_amari_alpha.Rd | 6 man/vi_arithmetic_geometric.Rd | 12 man/vi_chi_square.Rd | 6 man/vi_csiszar_vimco.Rd | 18 - man/vi_dual_csiszar_function.Rd | 18 - man/vi_jeffreys.Rd | 6 man/vi_jensen_shannon.Rd | 12 man/vi_log1p_abs.Rd | 12 man/vi_modified_gan.Rd | 6 man/vi_monte_carlo_variational_loss.Rd | 18 - man/vi_pearson.Rd | 6 man/vi_squared_hellinger.Rd | 6 man/vi_symmetrized_csiszar_function.Rd | 30 + man/vi_t_power.Rd | 6 man/vi_total_variation.Rd | 6 man/vi_triangular.Rd | 4 tests/testthat/test-bijectors.R | 4 tests/testthat/test-distributions.R | 5 148 files changed, 1194 insertions(+), 663 deletions(-)
Title: Access 'Piwik Pro' Website Statistics
Description: Run Queries against the API of 'Piwik Pro' <https://developers.piwik.pro/en/latest/custom_reports/http_api/http_api.html>. The result is a tibble.
Author: Martin Stingl <martin.stingl@dfv.de>
Maintainer: Martin Stingl <martin.stingl@dfv.de>
Diff between piwikproR versions 0.3.1 dated 2021-10-11 and 0.4.0 dated 2022-09-01
piwikproR-0.3.1/piwikproR/man/MAX_LINES_PER_REQUEST.Rd |only piwikproR-0.4.0/piwikproR/DESCRIPTION | 14 piwikproR-0.4.0/piwikproR/MD5 | 59 +- piwikproR-0.4.0/piwikproR/NAMESPACE | 8 piwikproR-0.4.0/piwikproR/NEWS.md | 10 piwikproR-0.4.0/piwikproR/R/apply_types.R | 9 piwikproR-0.4.0/piwikproR/R/build_filter.R | 9 piwikproR-0.4.0/piwikproR/R/build_query.R | 20 piwikproR-0.4.0/piwikproR/R/functions.R | 27 - piwikproR-0.4.0/piwikproR/R/get_app_detail.R |only piwikproR-0.4.0/piwikproR/R/get_apps_list.R |only piwikproR-0.4.0/piwikproR/R/get_generic_list.R |only piwikproR-0.4.0/piwikproR/R/get_login_token.R | 5 piwikproR-0.4.0/piwikproR/R/get_usergroups_list.R |only piwikproR-0.4.0/piwikproR/R/get_users_list.R |only piwikproR-0.4.0/piwikproR/R/is_column_a_metric.R | 81 +-- piwikproR-0.4.0/piwikproR/R/send_query.R | 39 - piwikproR-0.4.0/piwikproR/README.md | 4 piwikproR-0.4.0/piwikproR/build/vignette.rds |binary piwikproR-0.4.0/piwikproR/inst/doc/User-and-Website-APIs.R |only piwikproR-0.4.0/piwikproR/inst/doc/User-and-Website-APIs.Rmd |only piwikproR-0.4.0/piwikproR/inst/doc/User-and-Website-APIs.html |only piwikproR-0.4.0/piwikproR/inst/doc/piwikproR.html | 239 +++++++++- piwikproR-0.4.0/piwikproR/man/MAX_LINES_PER_REQUEST_ANALYTICS_API.Rd |only piwikproR-0.4.0/piwikproR/man/MAX_LINES_PER_REQUEST_USERS_API.Rd |only piwikproR-0.4.0/piwikproR/man/build_filter.Rd | 2 piwikproR-0.4.0/piwikproR/man/build_query.Rd | 14 piwikproR-0.4.0/piwikproR/man/get_app_detail.Rd |only piwikproR-0.4.0/piwikproR/man/get_apps_list.Rd |only piwikproR-0.4.0/piwikproR/man/get_generic_list.Rd |only piwikproR-0.4.0/piwikproR/man/get_metasites_list.Rd |only piwikproR-0.4.0/piwikproR/man/get_permissions_for_app.Rd |only piwikproR-0.4.0/piwikproR/man/get_permissions_for_metasite.Rd |only piwikproR-0.4.0/piwikproR/man/get_usergroup_members.Rd |only piwikproR-0.4.0/piwikproR/man/get_usergroups_list.Rd |only piwikproR-0.4.0/piwikproR/man/get_users_list.Rd |only piwikproR-0.4.0/piwikproR/man/send_query.Rd | 5 piwikproR-0.4.0/piwikproR/tests/testthat/test-build_filter.R |only piwikproR-0.4.0/piwikproR/tests/testthat/test-get_apps_list.R |only piwikproR-0.4.0/piwikproR/tests/testthat/test-get_usergroups_list.R |only piwikproR-0.4.0/piwikproR/tests/testthat/test-get_users_list.R |only piwikproR-0.4.0/piwikproR/tests/testthat/test-send_query.R | 37 - piwikproR-0.4.0/piwikproR/vignettes/User-and-Website-APIs.Rmd |only 43 files changed, 428 insertions(+), 154 deletions(-)
Title: Knowledge Discovery by Accuracy Maximization
Description: An unsupervised and semi-supervised learning algorithm that performs feature extraction
from noisy and high-dimensional data. It facilitates identification of patterns representing underlying
groups on all samples in a data set. Based on Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA.
(2017) Bioinformatics <doi:10.1093/bioinformatics/btw705> and Cacciatore S, Luchinat C, Tenori L. (2014)
Proc Natl Acad Sci USA <doi:10.1073/pnas.1220873111>.
Author: Stefano Cacciatore [aut, trl, cre]
,
Leonardo Tenori [aut]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between KODAMA versions 2.1 dated 2022-08-20 and 2.2 dated 2022-09-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/KOD.R | 8 ++++---- build/vignette.rds |binary inst/doc/KODAMA.pdf |binary man/KODAMA.Rd | 2 +- man/categorical.test.Rd | 5 +++-- 7 files changed, 18 insertions(+), 17 deletions(-)
Title: 'InfluxDB' 2.x Client
Description: 'InfluxDB' 2.x time-series database client. Supports both 'InfluxDB' OSS (<https://portal.influxdata.com/downloads/>) and Cloud (<https://cloud2.influxdata.com/>) version.
Author: Ales Pour <ales.pour@bonitoo.io>
Maintainer: Ales Pour <ales.pour@bonitoo.io>
Diff between influxdbclient versions 0.1.1 dated 2022-08-24 and 0.1.2 dated 2022-09-01
DESCRIPTION | 6 ++-- MD5 | 10 +++---- R/influxdb_client.R | 33 ++++++++++++++++++++------ README.md | 5 +++ tests/testthat/test-private.R | 38 +++++++++++++++--------------- tests/testthat/test-write.R | 53 ++++++++++++++++++++++++++++++++++++++++++ 6 files changed, 110 insertions(+), 35 deletions(-)
More information about influxdbclient at CRAN
Permanent link
Title: Visually Exploring Random Forests
Description: Graphic elements for exploring Random Forests using the 'randomForest' or
'randomForestSRC' package for survival, regression and classification forests and
'ggplot2' package plotting.
Author: John Ehrlinger <john.ehrlinger@gmail.com>
Maintainer: John Ehrlinger <john.ehrlinger@gmail.com>
Diff between ggRandomForests versions 2.2.0 dated 2022-05-10 and 2.2.1 dated 2022-09-01
ggRandomForests-2.2.0/ggRandomForests/NEWS |only ggRandomForests-2.2.0/ggRandomForests/R/cache_rfsrc_datasets.R |only ggRandomForests-2.2.0/ggRandomForests/R/interaction_data.R |only ggRandomForests-2.2.0/ggRandomForests/R/partial_coplot_data.R |only ggRandomForests-2.2.0/ggRandomForests/R/partial_data.R |only ggRandomForests-2.2.0/ggRandomForests/R/partial_surface_data.R |only ggRandomForests-2.2.0/ggRandomForests/R/rfsrc_data.R |only ggRandomForests-2.2.0/ggRandomForests/R/varsel_data.R |only ggRandomForests-2.2.0/ggRandomForests/data |only ggRandomForests-2.2.0/ggRandomForests/man/cache_rfsrc_datasets.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/interaction_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/partial_coplot_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/partial_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/partial_surface_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/rfsrc_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/man/varsel_data.Rd |only ggRandomForests-2.2.0/ggRandomForests/tests/testthat/test_cache_rfsrc_datasets.R |only ggRandomForests-2.2.1/ggRandomForests/DESCRIPTION | 12 ggRandomForests-2.2.1/ggRandomForests/MD5 | 169 ++--- ggRandomForests-2.2.1/ggRandomForests/NAMESPACE | 3 ggRandomForests-2.2.1/ggRandomForests/NEWS.md |only ggRandomForests-2.2.1/ggRandomForests/R/calc_roc.R | 63 +- ggRandomForests-2.2.1/ggRandomForests/R/combine.gg_partial.R | 74 ++ ggRandomForests-2.2.1/ggRandomForests/R/gg_error.R | 83 ++ ggRandomForests-2.2.1/ggRandomForests/R/gg_interaction.R | 104 ++- ggRandomForests-2.2.1/ggRandomForests/R/gg_minimal_depth.R | 115 ++- ggRandomForests-2.2.1/ggRandomForests/R/gg_minimal_vimp.R | 115 ++- ggRandomForests-2.2.1/ggRandomForests/R/gg_partial.R | 146 +++- ggRandomForests-2.2.1/ggRandomForests/R/gg_partial_coplot.R | 83 +- ggRandomForests-2.2.1/ggRandomForests/R/gg_rfsrc.R | 136 +++- ggRandomForests-2.2.1/ggRandomForests/R/gg_roc.R | 46 - ggRandomForests-2.2.1/ggRandomForests/R/gg_variable.R | 88 ++ ggRandomForests-2.2.1/ggRandomForests/R/gg_vimp.R | 120 ++- ggRandomForests-2.2.1/ggRandomForests/R/kaplan.R | 6 ggRandomForests-2.2.1/ggRandomForests/R/nelson.R | 4 ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_error.R | 101 ++- ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_interaction.R | 6 ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_minimal_depth.R | 91 ++ ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_minimal_vimp.R | 80 ++ ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_partial.R | 10 ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_partial_list.R | 8 ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_rfsrc.R | 81 ++ ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_roc.R | 40 - ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_survival.R | 28 ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_variable.R | 47 - ggRandomForests-2.2.1/ggRandomForests/R/plot.gg_vimp.R | 8 ggRandomForests-2.2.1/ggRandomForests/R/print.gg_minimal_depth.R | 25 ggRandomForests-2.2.1/ggRandomForests/R/quantile_pts.R | 6 ggRandomForests-2.2.1/ggRandomForests/R/surface_matrix.gg_partial_coplot.R | 35 - ggRandomForests-2.2.1/ggRandomForests/build/vignette.rds |binary ggRandomForests-2.2.1/ggRandomForests/inst/doc/ggrfRegression.R | 212 +++--- ggRandomForests-2.2.1/ggRandomForests/inst/doc/ggrfRegression.Rmd | 218 +++---- ggRandomForests-2.2.1/ggRandomForests/inst/doc/ggrfRegression.html | 127 ++-- ggRandomForests-2.2.1/ggRandomForests/man/calc_auc.Rd | 9 ggRandomForests-2.2.1/ggRandomForests/man/calc_roc.rfsrc.Rd | 15 ggRandomForests-2.2.1/ggRandomForests/man/combine.gg_partial.Rd | 65 ++ ggRandomForests-2.2.1/ggRandomForests/man/gg_error.Rd | 80 ++ ggRandomForests-2.2.1/ggRandomForests/man/gg_interaction.Rd | 104 ++- ggRandomForests-2.2.1/ggRandomForests/man/gg_minimal_depth.Rd | 99 ++- ggRandomForests-2.2.1/ggRandomForests/man/gg_minimal_vimp.Rd | 101 ++- ggRandomForests-2.2.1/ggRandomForests/man/gg_partial.Rd | 134 +++- ggRandomForests-2.2.1/ggRandomForests/man/gg_partial_coplot.rfsrc.Rd | 60 + ggRandomForests-2.2.1/ggRandomForests/man/gg_rfsrc.rfsrc.Rd | 73 ++ ggRandomForests-2.2.1/ggRandomForests/man/gg_roc.rfsrc.Rd | 21 ggRandomForests-2.2.1/ggRandomForests/man/gg_variable.Rd | 74 ++ ggRandomForests-2.2.1/ggRandomForests/man/gg_vimp.Rd | 76 ++ ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_error.Rd | 98 ++- ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_minimal_depth.Rd | 81 ++ ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_minimal_vimp.Rd | 74 ++ ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_rfsrc.Rd | 65 +- ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_roc.Rd | 10 ggRandomForests-2.2.1/ggRandomForests/man/plot.gg_survival.Rd | 15 ggRandomForests-2.2.1/ggRandomForests/man/print.gg_minimal_depth.Rd | 21 ggRandomForests-2.2.1/ggRandomForests/man/quantile_pts.Rd | 3 ggRandomForests-2.2.1/ggRandomForests/man/surface_matrix.Rd | 29 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/Rplots.pdf |only ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_error.R | 2 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_interaction.R | 3 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_minimal_depth.R | 64 +- ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_minimal_vimp.R | 44 + ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_partial.R | 37 + ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_rfsrc.R | 27 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_roc.R | 52 + ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_variable.R | 21 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_gg_vimp.R | 12 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_partial.rfsrc.R | 308 +++++----- ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_quantile_pts.R | 12 ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_surface_matrix.R | 37 + ggRandomForests-2.2.1/ggRandomForests/tests/testthat/test_survival_datasets.R | 6 ggRandomForests-2.2.1/ggRandomForests/vignettes/ggrfRegression.Rmd | 218 +++---- 90 files changed, 3237 insertions(+), 1403 deletions(-)
More information about ggRandomForests at CRAN
Permanent link
Title: Dose Response Models for Bayesian Model Averaging
Description: Fits (longitudinal) dose-response models utilizing a Bayesian model
averaging approach as outlined in Gould (2019) <doi:10.1002/bimj.201700211>
for both continuous and binary responses. Functions
for plotting and calculating various posterior quantities
(e.g. posterior mean, quantiles, probability of minimum efficacious dose,
etc.) are also implemented. Copyright Eli Lilly and Company (2019).
Author: Richard Daniel Payne [aut, cre],
William Michael Landau [rev],
Mitch Thomann [rev],
Eli Lilly and Company [cph]
Maintainer: Richard Daniel Payne <paynestatistics@gmail.com>
Diff between dreamer versions 3.0.0 dated 2021-08-20 and 3.1.0 dated 2022-09-01
dreamer-3.0.0/dreamer/man/summary.dreamer.Rd |only dreamer-3.0.0/dreamer/tests/spelling.R |only dreamer-3.1.0/dreamer/DESCRIPTION | 20 dreamer-3.1.0/dreamer/MD5 | 197 +-- dreamer-3.1.0/dreamer/NAMESPACE | 19 dreamer-3.1.0/dreamer/NEWS.md | 16 dreamer-3.1.0/dreamer/R/assert.R | 2 dreamer-3.1.0/dreamer/R/diagnostics.R | 2 dreamer-3.1.0/dreamer/R/dreamer.R | 63 dreamer-3.1.0/dreamer/R/dreamer_data.R | 4 dreamer-3.1.0/dreamer/R/dreamer_mean.R | 13 dreamer-3.1.0/dreamer/R/epll.R | 2 dreamer-3.1.0/dreamer/R/fit_model.R | 70 - dreamer-3.1.0/dreamer/R/get_dose.R | 8 dreamer-3.1.0/dreamer/R/get_jags_data.R | 2 dreamer-3.1.0/dreamer/R/get_jags_model.R | 2 dreamer-3.1.0/dreamer/R/model.R | 110 - dreamer-3.1.0/dreamer/R/model_longitudinal.R | 2 dreamer-3.1.0/dreamer/R/plot.R | 67 - dreamer-3.1.0/dreamer/R/plot_trace.R | 4 dreamer-3.1.0/dreamer/R/post_medx.R | 8 dreamer-3.1.0/dreamer/R/post_perc_effect.R | 6 dreamer-3.1.0/dreamer/R/posterior.R | 16 dreamer-3.1.0/dreamer/R/pr_eoi.R | 1 dreamer-3.1.0/dreamer/R/pr_med.R | 8 dreamer-3.1.0/dreamer/R/pr_medx.R | 8 dreamer-3.1.0/dreamer/R/print.R |only dreamer-3.1.0/dreamer/R/summary.R | 6 dreamer-3.1.0/dreamer/build/vignette.rds |binary dreamer-3.1.0/dreamer/inst/WORDLIST | 8 dreamer-3.1.0/dreamer/inst/doc/dreamer.R | 38 dreamer-3.1.0/dreamer/inst/doc/dreamer.Rmd | 64 dreamer-3.1.0/dreamer/inst/doc/dreamer.html | 645 +++++----- dreamer-3.1.0/dreamer/inst/doc/dreamer_method.R |only dreamer-3.1.0/dreamer/inst/doc/dreamer_method.Rmd |only dreamer-3.1.0/dreamer/inst/doc/dreamer_method.html |only dreamer-3.1.0/dreamer/man/dreamer_data.Rd | 126 + dreamer-3.1.0/dreamer/man/dreamer_mcmc.Rd | 116 + dreamer-3.1.0/dreamer/man/dreamerplot.Rd | 22 dreamer-3.1.0/dreamer/man/examples/ex-dreamer_data.R | 20 dreamer-3.1.0/dreamer/man/examples/ex-plot_comparison.R | 2 dreamer-3.1.0/dreamer/man/examples/ex-post_medx.R | 2 dreamer-3.1.0/dreamer/man/examples/ex-post_perc_effect.R | 2 dreamer-3.1.0/dreamer/man/examples/ex-pr_med.R | 2 dreamer-3.1.0/dreamer/man/examples/ex-pr_medx.R | 2 dreamer-3.1.0/dreamer/man/figures/README-example-1.png |binary dreamer-3.1.0/dreamer/man/figures/README-example-2.png |binary dreamer-3.1.0/dreamer/man/model.Rd | 88 - dreamer-3.1.0/dreamer/man/plot_comparison.Rd | 2 dreamer-3.1.0/dreamer/man/post_medx.Rd | 6 dreamer-3.1.0/dreamer/man/post_perc_effect.Rd | 6 dreamer-3.1.0/dreamer/man/posterior.Rd | 12 dreamer-3.1.0/dreamer/man/pr_med.Rd | 2 dreamer-3.1.0/dreamer/man/pr_medx.Rd | 2 dreamer-3.1.0/dreamer/man/summary.dreamer_mcmc.Rd |only dreamer-3.1.0/dreamer/tests/testthat/test-assertions.R | 33 dreamer-3.1.0/dreamer/tests/testthat/test-data-generation.R | 10 dreamer-3.1.0/dreamer/tests/testthat/test-dreamer_mcmc.R | 41 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-beta-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-beta.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-emax-binary.R | 16 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-emax.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-exp-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-exp.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-linear-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-linear.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-loglinear-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-loglinear.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-logquad-binary.R | 16 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-logquad.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-quad-binary.R | 20 dreamer-3.1.0/dreamer/tests/testthat/test-get_dose-quad.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-get_extreme-beta.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_extreme-independent.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_extreme-quadratic.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-get_extreme_monotonic.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-jags-seed.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-plots.R | 22 dreamer-3.1.0/dreamer/tests/testthat/test-post_medx.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-post_perc_effect.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-beta-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-beta.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-emax-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-emax.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-exponential-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-exponential.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-independent-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-independent.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-linear-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-linear.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-loglinear-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-loglinear.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-logquad-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-logquad.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-quad-binary.R | 8 dreamer-3.1.0/dreamer/tests/testthat/test-posterior-quad.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-posterior.R | 19 dreamer-3.1.0/dreamer/tests/testthat/test-pr_eoi.R | 2 dreamer-3.1.0/dreamer/tests/testthat/test-pr_med.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-pr_medx.R | 4 dreamer-3.1.0/dreamer/tests/testthat/test-print.R |only dreamer-3.1.0/dreamer/tests/testthat/test-weights.R | 14 dreamer-3.1.0/dreamer/vignettes/dreamer.Rmd | 64 dreamer-3.1.0/dreamer/vignettes/dreamer_method.Rmd |only 104 files changed, 1303 insertions(+), 981 deletions(-)
Title: A Grammar of Data Manipulation
Description: A fast, consistent tool for working with data frame
like objects, both in memory and out of memory.
Author: Hadley Wickham [aut, cre] ,
Romain Francois [aut] ,
Lionel Henry [aut],
Kirill Mueller [aut] ,
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dplyr versions 1.0.9 dated 2022-04-28 and 1.0.10 dated 2022-09-01
DESCRIPTION | 8 MD5 | 58 +++--- NEWS.md | 4 build/dplyr.pdf |binary build/vignette.rds |binary inst/doc/base.html | 226 ++++++++++++----------- inst/doc/colwise.html | 64 +++--- inst/doc/compatibility.html | 13 + inst/doc/dplyr.html | 351 +++++++++++++++++++------------------ inst/doc/grouping.html | 150 ++++++++------- inst/doc/programming.html | 13 + inst/doc/rowwise.html | 26 +- inst/doc/two-table.html | 52 +++-- inst/doc/window-functions.html | 37 ++- man/across.Rd | 60 +++--- man/dplyr_data_masking.Rd | 24 +- man/filter.Rd | 12 - man/ident.Rd | 2 man/mutate.Rd | 12 - man/mutate_all.Rd | 12 - man/nest_by.Rd | 12 - man/nest_join.Rd | 2 man/select.Rd | 49 +++-- man/summarise_all.Rd | 12 - tests/testthat/_snaps/arrange.md | 2 tests/testthat/_snaps/distinct.md | 2 tests/testthat/_snaps/filter.md | 6 tests/testthat/_snaps/group-by.md | 2 tests/testthat/_snaps/mutate.md | 6 tests/testthat/_snaps/summarise.md | 4 30 files changed, 688 insertions(+), 533 deletions(-)
Title: Use Open Data from the Czech Statistical Office in R
Description: Get programmatic access to the open data provided by the
Czech Statistical Office (CZSO, <https://czso.cz>).
Author: Petr Bouchal [aut, cre] ,
Jindra Lacko [ctb]
Maintainer: Petr Bouchal <pbouchal@gmail.com>
Diff between czso versions 0.3.9 dated 2022-03-09 and 0.3.10 dated 2022-09-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ build/czso.pdf |binary man/czso-package.Rd | 4 ++-- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: R Commander Plug-in for the EZR (Easy R) Package
Description: EZR (Easy R) adds a variety of statistical functions, including survival analyses, ROC analyses, metaanalyses, sample size calculation, and so on, to the R commander. EZR enables point-and-click easy access to statistical functions, especially for medical statistics. EZR is platform-independent and runs on Windows, Mac OS X, and UNIX. Its complete manual is available only in Japanese (Chugai Igakusha, ISBN: 978-4-498-10918-6, Nankodo, ISBN: 978-4-524-26158-1, Ohmsha, ISBN: 978-4-274-22632-8), but an report that introduced the investigation of EZR was published in Bone Marrow Transplantation (Nature Publishing Group) as an Open article. This report can be used as a simple manual. It can be freely downloaded from the journal website as shown below. This report has been cited in more than 3,000 scientific articles.
Author: Yoshinobu Kanda
Maintainer: Yoshinobu Kanda <ycanda-tky@umin.ac.jp>
Diff between RcmdrPlugin.EZR versions 1.55 dated 2022-01-04 and 1.56 dated 2022-09-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS | 8 ++++++++ R/EZR.R | 33 +++++++++++++++++++-------------- inst/CHANGES | 7 +++++++ inst/doc/ezr.htm | 23 +++++++++++++++++------ inst/doc/ezr.pdf |binary man/EZR.Rd | 4 ++-- 8 files changed, 65 insertions(+), 34 deletions(-)
More information about RcmdrPlugin.EZR at CRAN
Permanent link
Title: Test Data for the 'admiral' Package
Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clinical
Data Interchange Standards Consortium (CDISC) pilot project used for testing
and developing Analysis Data Model (ADaM) derivations inside the 'admiral'
package.
Author: Thomas Neitmann [aut, cre],
Stefan Bundfuss [aut],
Ross Farrugia [ctb],
Gopi Vegesna [ctb],
Sophie Shapcott [ctb],
Mahdi About [ctb],
Antonio Rodriguez [ctb],
Claudia Carlucci [ctb],
Annie Yang [ctb],
F. Hoffmann-La Roche AG [cph, fnd],
GlaxoSmithKli [...truncated...]
Maintainer: Thomas Neitmann <thomas.neitmann@roche.com>
Diff between admiral.test versions 0.2.0 dated 2022-05-30 and 0.3.0 dated 2022-09-01
admiral.test-0.2.0/admiral.test/R/globals.R |only admiral.test-0.3.0/admiral.test/DESCRIPTION | 9 +- admiral.test-0.3.0/admiral.test/MD5 | 50 ++++++------ admiral.test-0.3.0/admiral.test/NAMESPACE | 5 - admiral.test-0.3.0/admiral.test/R/admiral.test.R | 5 - admiral.test-0.3.0/admiral.test/R/data.R | 43 ++++++++-- admiral.test-0.3.0/admiral.test/R/get_terms.R | 32 ++++--- admiral.test-0.3.0/admiral.test/README.md | 31 ++++++- admiral.test-0.3.0/admiral.test/data/admiral_ds.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_lb.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_mh.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_pc.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_rs.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_suppds.rda |binary admiral.test-0.3.0/admiral.test/data/admiral_tu.rda |binary admiral.test-0.3.0/admiral.test/data/datalist |only admiral.test-0.3.0/admiral.test/data/raw_ds.rda |only admiral.test-0.3.0/admiral.test/data/raw_lb.rda |only admiral.test-0.3.0/admiral.test/data/raw_mh.rda |only admiral.test-0.3.0/admiral.test/data/raw_suppds.rda |only admiral.test-0.3.0/admiral.test/man/admiral.test-package.Rd | 1 admiral.test-0.3.0/admiral.test/man/admiral_ds.Rd | 11 +- admiral.test-0.3.0/admiral.test/man/admiral_lb.Rd | 7 + admiral.test-0.3.0/admiral.test/man/admiral_mh.Rd | 9 +- admiral.test-0.3.0/admiral.test/man/admiral_rs.Rd | 2 admiral.test-0.3.0/admiral.test/man/admiral_suppds.Rd | 4 admiral.test-0.3.0/admiral.test/man/admiral_tu.Rd | 2 admiral.test-0.3.0/admiral.test/man/raw_ds.Rd |only admiral.test-0.3.0/admiral.test/man/raw_lb.Rd |only admiral.test-0.3.0/admiral.test/man/raw_mh.Rd |only admiral.test-0.3.0/admiral.test/man/raw_suppds.Rd |only 31 files changed, 141 insertions(+), 70 deletions(-)
Title: Plots for the Quantitative Analysis of Textual Data
Description: Plotting functions for visualising textual data. Extends 'quanteda' and
related packages with plot methods designed specifically for text data, textual statistics,
and models fit to textual data. Plot types include word clouds, lexical dispersion plots,
scaling plots, network visualisations, and word 'keyness' plots.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
Ian Fellows [cph] ),
European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textplots versions 0.94.1 dated 2022-03-23 and 0.94.2 dated 2022-09-01
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/textplot_network.R | 2 +- README.md | 6 +++--- inst/WORDLIST | 1 + tests/testthat.R | 3 +++ 6 files changed, 17 insertions(+), 13 deletions(-)
More information about quanteda.textplots at CRAN
Permanent link
Title: Generalized and Classical Blockmodeling of Valued Networks
Description: This is primarily meant as an implementation of generalized blockmodeling for valued networks.
In addition, measures of similarity or dissimilarity based on structural equivalence and
regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted:
Žiberna (2007)<doi:10.1016/j.socnet.2006.04.002>, Žiberna (2008)<doi:10.1080/00222500701790207>,
Žiberna (2014)<doi:10.1016/j.socnet.2014.04.002>.
Author: Ales Žiberna [aut, cre]
Maintainer: Ales Žiberna <ales.ziberna@gmail.com>
Diff between blockmodeling versions 1.0.5 dated 2021-09-02 and 1.1.3 dated 2022-09-01
CHANGES | 73 ++ DESCRIPTION | 14 MD5 | 65 +- NAMESPACE | 1 R/clu.R | 4 R/critFunC.R | 182 ++++--- R/critFunCinternalFunctions.R | 6 R/fun.by.blocks.default.R | 6 R/funByBlocks.R | 8 R/gplot.R | 4 R/loadnetwork.R | 2 R/optRandomParC.R | 83 ++- R/orderClu.R | 2 R/plotMat.R | 151 +++-- R/printRes.R | 1 R/savenetwork.R | 2 R/sedist.R | 4 R/splitClu.R | 4 R/unlistClu.R |only R/unlistCluInt.R | 2 data/baker.rda |binary data/notesBorrowing.RData |binary man/Pajek.Rd | 4 man/critFunC.Rd | 37 - man/funByBlocks.Rd | 8 man/genRandomPar.Rd | 2 man/gplot1.Rd | 4 man/optRandomParC.Rd | 21 man/plotMat.Rd | 22 man/splitClu.Rd | 4 man/unlistClu.Rd |only man/unlistCluInt.Rd | 2 src/blockmodelingC.c | 1091 +++++++++++++++++++++++++++++++++--------- src/init.c | 12 tests |only 35 files changed, 1360 insertions(+), 461 deletions(-)
Title: 'Webdriver'/'Selenium' Binary Manager
Description: There are a number of binary files associated with the
'Webdriver'/'Selenium' project. This package provides functions to download
these binaries and to manage processes involving them.
Author: John Harrison [aut] ,
Ju Yeong Kim [cre]
Maintainer: Ju Yeong Kim <jkim2345@fredhutch.org>
Diff between wdman versions 0.2.5 dated 2020-01-31 and 0.2.6 dated 2022-09-01
DESCRIPTION | 21 - MD5 | 63 ++-- NEWS.md | 4 R/assertions.R | 10 R/chrome.R | 90 ++++-- R/gecko.R | 95 ++++--- R/iedriver.R | 88 +++--- R/phantom.R | 103 ++++--- R/selenium.R | 103 ++++--- R/utils.R | 88 ++++-- R/wdman-package.r | 8 README.md | 10 build/vignette.rds |binary inst/doc/basics.Rmd | 38 ++ inst/doc/basics.html | 514 ++++++++++++++++++++++++--------------- inst/etc |only inst/yaml/chromedriver.yml | 1 inst/yaml/geckodriver.yml | 2 man/chrome.Rd | 1 man/gecko.Rd | 1 man/iedriver.Rd | 1 man/phantomjs.Rd | 1 man/selenium.Rd | 1 man/wdman.Rd | 9 tests/testthat/helper.R | 32 +- tests/testthat/test-assertions.R | 54 ++-- tests/testthat/test-chrome.R | 44 ++- tests/testthat/test-gecko.R | 47 ++- tests/testthat/test-iedriver.R | 46 ++- tests/testthat/test-phantom.R | 46 ++- tests/testthat/test-selenium.R | 136 +++++----- tests/testthat/test-utils.R | 81 +++--- vignettes/basics.Rmd | 38 ++ 33 files changed, 1095 insertions(+), 681 deletions(-)
Title: A Binary Download Manager
Description: Tools and functions for managing the download of binary files.
Binary repositories are defined in 'YAML' format. Defining new
pre-download, download and post-download templates allow additional
repositories to be added.
Author: John Harrison [aut] ,
Ju Yeong Kim [cre]
Maintainer: Ju Yeong Kim <jkim2345@fredhutch.org>
Diff between binman versions 0.1.2 dated 2020-10-02 and 0.1.3 dated 2022-09-01
binman-0.1.2/binman/inst/doc/binman-Basics.Rmd |only binman-0.1.2/binman/inst/doc/binman-Basics.html |only binman-0.1.2/binman/vignettes/binman-Basics.Rmd |only binman-0.1.3/binman/DESCRIPTION | 9 ++++----- binman-0.1.3/binman/MD5 | 18 +++++++++--------- binman-0.1.3/binman/NEWS.md | 4 ++++ binman-0.1.3/binman/R/predl_templates.R | 7 ++++++- binman-0.1.3/binman/README.md | 4 ++-- binman-0.1.3/binman/build/vignette.rds |binary binman-0.1.3/binman/inst/doc/basics.Rmd |only binman-0.1.3/binman/inst/doc/basics.html |only binman-0.1.3/binman/man/predl_github_assets.Rd | 3 +++ binman-0.1.3/binman/vignettes/basics.Rmd |only 13 files changed, 28 insertions(+), 17 deletions(-)