Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Melissa Hallow [aut],
Wenping Wang [aut],
Zufar Mulyukov [ctb],
Alan Hindmarsh [ctb],
Awad H. Al-Mohy [ctb],
Matt Dowle [ctb],
Cleve Moler [ctb],
David Cooley [ctb],
Drew Schmidt [ctb],
Arun Srinivasan [ctb],
Ernst Hair [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 2.0.7 dated 2022-05-17 and 2.0.8 dated 2022-09-22
rxode2-2.0.7/rxode2/vignettes/rxode2-intro.R |only rxode2-2.0.7/rxode2/vignettes/rxode2-tutorials.R |only rxode2-2.0.8/rxode2/DESCRIPTION | 10 rxode2-2.0.8/rxode2/MD5 | 281 - rxode2-2.0.8/rxode2/NAMESPACE | 31 rxode2-2.0.8/rxode2/NEWS.md | 60 rxode2-2.0.8/rxode2/R/RcppExports.R | 70 rxode2-2.0.8/rxode2/R/asFunction.R |only rxode2-2.0.8/rxode2/R/assert.R | 3 rxode2-2.0.8/rxode2/R/dsl.R | 65 rxode2-2.0.8/rxode2/R/err-foceiBase.R | 224 - rxode2-2.0.8/rxode2/R/err-sim.R | 71 rxode2-2.0.8/rxode2/R/err.R | 196 rxode2-2.0.8/rxode2/R/et.R | 4 rxode2-2.0.8/rxode2/R/fixef.R |only rxode2-2.0.8/rxode2/R/geom-amt.R | 4 rxode2-2.0.8/rxode2/R/llik.R |only rxode2-2.0.8/rxode2/R/mu.R | 57 rxode2-2.0.8/rxode2/R/piping-ini.R | 40 rxode2-2.0.8/rxode2/R/piping-model.R | 30 rxode2-2.0.8/rxode2/R/piping.R | 26 rxode2-2.0.8/rxode2/R/plot.R | 26 rxode2-2.0.8/rxode2/R/reexport.R | 3 rxode2-2.0.8/rxode2/R/rxJacobian.R | 2 rxode2-2.0.8/rxode2/R/rxShiny.R | 10 rxode2-2.0.8/rxode2/R/rxUiGet.R | 53 rxode2-2.0.8/rxode2/R/rxValidate.R | 1 rxode2-2.0.8/rxode2/R/rxode-options.R | 5 rxode2-2.0.8/rxode2/R/rxode2.R | 23 rxode2-2.0.8/rxode2/R/rxode2_md5.R | 2 rxode2-2.0.8/rxode2/R/rxrandom.R | 77 rxode2-2.0.8/rxode2/R/rxsolve.R | 69 rxode2-2.0.8/rxode2/R/symengine.R | 434 +- rxode2-2.0.8/rxode2/R/ui-bind.R | 6 rxode2-2.0.8/rxode2/R/ui.R | 47 rxode2-2.0.8/rxode2/R/utils.R | 5 rxode2-2.0.8/rxode2/build/partial.rdb |binary rxode2-2.0.8/rxode2/build/vignette.rds |binary rxode2-2.0.8/rxode2/data/rxReservedKeywords.rda |binary rxode2-2.0.8/rxode2/inst/doc/rxode2-syntax.Rmd | 4 rxode2-2.0.8/rxode2/inst/doc/rxode2-syntax.html | 24 rxode2-2.0.8/rxode2/inst/include/rxode2.h | 69 rxode2-2.0.8/rxode2/inst/include/rxode2_RcppExports.h | 42 rxode2-2.0.8/rxode2/inst/include/rxode2_control.h | 3 rxode2-2.0.8/rxode2/inst/include/rxode2_model_shared.c | 137 rxode2-2.0.8/rxode2/inst/include/rxode2_model_shared.h | 116 rxode2-2.0.8/rxode2/man/add.dosing.Rd | 2 rxode2-2.0.8/rxode2/man/add.sampling.Rd | 2 rxode2-2.0.8/rxode2/man/dot-handleSingleErrTypeNormOrTFoceiBase.Rd | 15 rxode2-2.0.8/rxode2/man/dot-rxGetPredictionDVTransform.Rd |only rxode2-2.0.8/rxode2/man/dot-rxJacobian.Rd | 2 rxode2-2.0.8/rxode2/man/dot-s3register.Rd | 6 rxode2-2.0.8/rxode2/man/et.Rd | 8 rxode2-2.0.8/rxode2/man/etRbind.Rd | 2 rxode2-2.0.8/rxode2/man/etRep.Rd | 2 rxode2-2.0.8/rxode2/man/etSeq.Rd | 2 rxode2-2.0.8/rxode2/man/ini.Rd | 6 rxode2-2.0.8/rxode2/man/llikBeta.Rd |only rxode2-2.0.8/rxode2/man/llikBinom.Rd |only rxode2-2.0.8/rxode2/man/llikCauchy.Rd |only rxode2-2.0.8/rxode2/man/llikChisq.Rd |only rxode2-2.0.8/rxode2/man/llikExp.Rd |only rxode2-2.0.8/rxode2/man/llikF.Rd |only rxode2-2.0.8/rxode2/man/llikGamma.Rd |only rxode2-2.0.8/rxode2/man/llikGeom.Rd |only rxode2-2.0.8/rxode2/man/llikNbinom.Rd |only rxode2-2.0.8/rxode2/man/llikNbinomMu.Rd |only rxode2-2.0.8/rxode2/man/llikNorm.Rd |only rxode2-2.0.8/rxode2/man/llikPois.Rd |only rxode2-2.0.8/rxode2/man/llikT.Rd |only rxode2-2.0.8/rxode2/man/llikUnif.Rd |only rxode2-2.0.8/rxode2/man/llikWeibull.Rd |only rxode2-2.0.8/rxode2/man/model.Rd | 6 rxode2-2.0.8/rxode2/man/phi.Rd | 2 rxode2-2.0.8/rxode2/man/reexports.Rd | 4 rxode2-2.0.8/rxode2/man/rxAppendModel.Rd | 5 rxode2-2.0.8/rxode2/man/rxCompile.Rd | 6 rxode2-2.0.8/rxode2/man/rxGetDistributionSimulationLines.Rd | 6 rxode2-2.0.8/rxode2/man/rxIndLin_.Rd | 2 rxode2-2.0.8/rxode2/man/rxPreferredDistributionName.Rd | 4 rxode2-2.0.8/rxode2/man/rxSolve.Rd | 23 rxode2-2.0.8/rxode2/man/rxToSE.Rd | 6 rxode2-2.0.8/rxode2/man/rxbeta.Rd | 9 rxode2-2.0.8/rxode2/man/rxbinom.Rd | 5 rxode2-2.0.8/rxode2/man/rxcauchy.Rd | 9 rxode2-2.0.8/rxode2/man/rxchisq.Rd | 5 rxode2-2.0.8/rxode2/man/rxexp.Rd | 5 rxode2-2.0.8/rxode2/man/rxf.Rd | 9 rxode2-2.0.8/rxode2/man/rxgamma.Rd | 13 rxode2-2.0.8/rxode2/man/rxgeom.Rd | 5 rxode2-2.0.8/rxode2/man/rxnbinom.Rd |only rxode2-2.0.8/rxode2/man/rxode2.Rd | 31 rxode2-2.0.8/rxode2/man/rxpois.Rd | 5 rxode2-2.0.8/rxode2/man/rxt.Rd | 5 rxode2-2.0.8/rxode2/man/rxunif.Rd | 9 rxode2-2.0.8/rxode2/man/rxweibull.Rd | 9 rxode2-2.0.8/rxode2/man/stat_amt.Rd | 16 rxode2-2.0.8/rxode2/man/stat_cens.Rd | 14 rxode2-2.0.8/rxode2/src/Makevars.in | 6 rxode2-2.0.8/rxode2/src/RcppExports.cpp | 270 + rxode2-2.0.8/rxode2/src/codegen.c | 504 +- rxode2-2.0.8/rxode2/src/codegen.h | 2 rxode2-2.0.8/rxode2/src/codegen2.h | 194 rxode2-2.0.8/rxode2/src/etTran.cpp | 61 rxode2-2.0.8/rxode2/src/expm.cpp | 2 rxode2-2.0.8/rxode2/src/genModelVars.h | 6 rxode2-2.0.8/rxode2/src/getTime.h | 4 rxode2-2.0.8/rxode2/src/handle_evid.h | 1 rxode2-2.0.8/rxode2/src/init.c | 88 rxode2-2.0.8/rxode2/src/lincmt.c | 1843 ++++---- rxode2-2.0.8/rxode2/src/lincmtB.cpp | 12 rxode2-2.0.8/rxode2/src/llik.h |only rxode2-2.0.8/rxode2/src/llik2.h |only rxode2-2.0.8/rxode2/src/llikBeta.cpp |only rxode2-2.0.8/rxode2/src/llikBinom.cpp |only rxode2-2.0.8/rxode2/src/llikCauchy.cpp |only rxode2-2.0.8/rxode2/src/llikChisq.cpp |only rxode2-2.0.8/rxode2/src/llikExp.cpp |only rxode2-2.0.8/rxode2/src/llikF.cpp |only rxode2-2.0.8/rxode2/src/llikGamma.cpp |only rxode2-2.0.8/rxode2/src/llikGeom.cpp |only rxode2-2.0.8/rxode2/src/llikNbinom.cpp |only rxode2-2.0.8/rxode2/src/llikNbinom2.cpp |only rxode2-2.0.8/rxode2/src/llikNorm.cpp |only rxode2-2.0.8/rxode2/src/llikPois.cpp |only rxode2-2.0.8/rxode2/src/llikT.cpp |only rxode2-2.0.8/rxode2/src/llikUnif.cpp |only rxode2-2.0.8/rxode2/src/llikWeibull.cpp |only rxode2-2.0.8/rxode2/src/ode.h | 4 rxode2-2.0.8/rxode2/src/par_solve.cpp | 6 rxode2-2.0.8/rxode2/src/par_solve.h | 20 rxode2-2.0.8/rxode2/src/parseFuns.h | 22 rxode2-2.0.8/rxode2/src/parseFunsRandom.h | 55 rxode2-2.0.8/rxode2/src/parseStatements.h | 3 rxode2-2.0.8/rxode2/src/parseSyntaxErrors.h | 23 rxode2-2.0.8/rxode2/src/parseVars.h | 1 rxode2-2.0.8/rxode2/src/rxData.cpp | 2118 +++++----- rxode2-2.0.8/rxode2/src/rxData.h | 2 rxode2-2.0.8/rxode2/src/rxThreadData.h |only rxode2-2.0.8/rxode2/src/rxthreefry.cpp | 82 rxode2-2.0.8/rxode2/src/rxthreefry.h | 5 rxode2-2.0.8/rxode2/src/tran.c | 9 rxode2-2.0.8/rxode2/src/tran.h | 5 rxode2-2.0.8/rxode2/tests/testthat/test-dsl.R | 4 rxode2-2.0.8/rxode2/tests/testthat/test-expand-grid.R | 1 rxode2-2.0.8/rxode2/tests/testthat/test-fixef.R |only rxode2-2.0.8/rxode2/tests/testthat/test-fun.R | 35 rxode2-2.0.8/rxode2/tests/testthat/test-lincmt-solve.R | 40 rxode2-2.0.8/rxode2/tests/testthat/test-llik.R |only rxode2-2.0.8/rxode2/tests/testthat/test-parsing.R | 4 rxode2-2.0.8/rxode2/tests/testthat/test-rxSumProd-1.qs |only rxode2-2.0.8/rxode2/tests/testthat/test-rxSumProd.R |only rxode2-2.0.8/rxode2/tests/testthat/test-rxflag.R |only rxode2-2.0.8/rxode2/tests/testthat/test-ui-bad.R | 3 rxode2-2.0.8/rxode2/tests/testthat/test-ui-err.R | 24 rxode2-2.0.8/rxode2/tests/testthat/test-ui-expit.R |only rxode2-2.0.8/rxode2/tests/testthat/test-ui-focei-ord.R |only rxode2-2.0.8/rxode2/tests/testthat/test-ui-good.R | 42 rxode2-2.0.8/rxode2/tests/testthat/test-ui-ini-str.R |only rxode2-2.0.8/rxode2/tests/testthat/test-ui-piping.R | 21 rxode2-2.0.8/rxode2/tests/testthat/test-ui-pred-err.R | 2 rxode2-2.0.8/rxode2/tests/testthat/test-ui-promote.R |only rxode2-2.0.8/rxode2/tests/testthat/test-ui-simulation.R | 315 + rxode2-2.0.8/rxode2/tests/testthat/test-ui.R | 80 rxode2-2.0.8/rxode2/tests/testthat/test-zzzzz.R | 3 rxode2-2.0.8/rxode2/vignettes/rxode2-syntax.Rmd | 4 166 files changed, 5639 insertions(+), 2877 deletions(-)
Title: Processing various types of data on GEO and TCGA
Description: Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.
Author: Erqiang Hu [aut, cre]
Maintainer: Erqiang Hu <13766876214@163.com>
Diff between GeoTcgaData versions 1.1.1 dated 2022-08-12 and 1.1.1.992 dated 2022-09-22
DESCRIPTION | 6 - MD5 | 22 +++--- R/TCGA_id_conversion.R | 11 +-- R/fpkm_count_conversion.r | 42 ++++++++--- README.md | 17 +++- build/vignette.rds |binary inst/doc/GeoTcgaData.R | 6 + inst/doc/GeoTcgaData.Rmd | 27 +++++-- inst/doc/GeoTcgaData.html | 168 +++++++++++++++++++++++++--------------------- man/countToFpkm_matrix.Rd | 9 +- man/countToTpm_matrix.Rd | 9 +- vignettes/GeoTcgaData.Rmd | 27 +++++-- 12 files changed, 217 insertions(+), 127 deletions(-)
Title: Perform Batch Balanced KNN in R
Description: A fast and intuitive batch effect removal tool for single-cell data. BBKNN is originally used in the 'scanpy' python package, and now can be used with 'Seurat' seamlessly.
Author: Yuchen Li [aut, cre]
Maintainer: Yuchen Li <liyuchen_1995@outlook.com>
Diff between bbknnR versions 1.0.1 dated 2022-08-23 and 1.0.2 dated 2022-09-22
bbknnR-1.0.1/bbknnR/tests/testthat/test_ridge.R |only bbknnR-1.0.2/bbknnR/DESCRIPTION | 8 ++++---- bbknnR-1.0.2/bbknnR/MD5 | 11 +++++------ bbknnR-1.0.2/bbknnR/NAMESPACE | 2 +- bbknnR-1.0.2/bbknnR/R/ridge_regression.R | 12 ++++++------ bbknnR-1.0.2/bbknnR/README.md | 7 +++++++ bbknnR-1.0.2/bbknnR/inst/doc/bbknnR-tutorial.html | 15 +++++++++++---- 7 files changed, 34 insertions(+), 21 deletions(-)
Title: Isoscape Computation and Inference of Spatial Origins using
Mixed Models
Description: Building isoscapes using mixed models and inferring the geographic
origin of samples based on their isotopic ratios. This package is essentially a
simplified interface to several other packages which implements a new
statistical framework based on mixed models. It uses 'spaMM' for fitting and
predicting isoscapes, and assigning an organism's origin depending on its
isotopic ratio. 'IsoriX' also relies heavily on the package 'rasterVis' for
plotting the maps produced with 'raster' using 'lattice'.
Author: Alexandre Courtiol [aut, cre] ,
Francois Rousset [aut] ,
Marie-Sophie Rohwaeder [aut],
Stephanie Kramer-Schadt [aut]
Maintainer: Alexandre Courtiol <alexandre.courtiol@gmail.com>
Diff between IsoriX versions 0.8.3 dated 2022-09-12 and 0.9.0 dated 2022-09-22
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- R/calibfit.R | 2 +- R/isofind.R | 16 +++++++++------- inst/NEWS.Rd | 15 ++++++++++++++- man/calibfit.Rd | 2 +- 6 files changed, 35 insertions(+), 19 deletions(-)
Title: API Client for the 'ClimMob' Platform
Description: API client for 'ClimMob', an open source software for decentralized
large-N trials with the 'tricot' approach <https://climmob.net/>.
Developed by van Etten et al. (2016) <doi:10.1017/S0014479716000739>, it turns the
research paradigm on its head; instead of a few researchers designing complicated
trials to compare several technologies in search of the best solutions for the
target environment, it enables many participants to carry out reasonably simple
experiments that taken together can offer even more information. 'ClimMobTools'
enables project managers to deep explore and analyse their 'ClimMob' data in R.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
Brandon Madriz [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between ClimMobTools versions 0.4.6 dated 2022-08-10 and 0.5 dated 2022-09-22
DESCRIPTION | 13 +++--- MD5 | 20 +++++----- NAMESPACE | 4 -- NEWS.md | 2 - R/as.data.frame-climmob_list.R | 4 ++ R/getTraitList.R | 4 +- R/rmGeoIdentity.R | 80 +++++++++++++++++++++-------------------- build/partial.rdb |binary build/vignette.rds |binary man/getTraitList.Rd | 5 +- man/rmGeoIdentity.Rd | 11 +++-- 11 files changed, 74 insertions(+), 69 deletions(-)
Title: Visualisation and Analysis of Ocean Data Derived from Satellites
Description: With 'satin' functions, visualisation, data extraction and further analysis like producing climatologies from several images, and anomalies of satellite derived ocean data can be easily done. Reading functions can import a user defined geographical extent of data stored in netCDF files. Currently supported ocean data sources include NASA's Oceancolor web page <https://oceancolor.gsfc.nasa.gov/>, sensors VIIRS-SNPP; MODIS-Terra; MODIS-Aqua; and SeaWiFS. Available variables from this source includes chlorophyll concentration, sea surface temperature (SST), and several others. Data sources specific for SST that can be imported too includes Pathfinder AVHRR <https://www.ncei.noaa.gov/products/avhrr-pathfinder-sst> and GHRSST <https://www.ghrsst.org/>. In addition, ocean productivity data produced by Oregon State University <http://sites.science.oregonstate.edu/ocean.productivity/> can also be handled previous conversion from HDF4 to HDF5 format. Many other oce [...truncated...]
Author: Hector Villalobos and Eduardo Gonzalez-Rodriguez <egonzale@cicese.mx>
Maintainer: Hector Villalobos <hvillalo@ipn.mx>
Diff between satin versions 1.0 dated 2020-10-07 and 1.1.0 dated 2022-09-22
DESCRIPTION | 14 +++++++------- MD5 | 36 ++++++++++++++++++++---------------- NAMESPACE | 3 +-- NEWS |only NEWS.md |only R/plot.satin.R | 13 ++++++++----- R/read.cmems.R | 35 ++++++++++++++++++++--------------- R/read.ghrsst.R | 14 +++++++------- R/read.osunpp.R | 14 ++++++++++---- R/satinMean.R | 30 ++++++++++++++++++------------ R/velocity.R |only README.md | 4 ++++ data/dchl.rda |binary data/dcmems.rda |binary data/dmap.rda |binary data/dnpp.rda |binary data/dsst.rda |binary man/dmap.Rd | 4 ++-- man/plot.satin.Rd | 6 ++++-- man/read.cmems.Rd | 2 +- man/velocity.Rd |only 21 files changed, 102 insertions(+), 73 deletions(-)
Title: Dimension Reduction and Estimation Methods
Description: We provide linear and nonlinear dimension reduction techniques.
Intrinsic dimension estimation methods for exploratory analysis are also provided.
For more details on the package, see the paper by You (2020) <arXiv:2005.11107>.
Author: Kisung You [aut, cre] ,
Changhee Suh [ctb],
Dennis Shung [ctb]
Maintainer: Kisung You <kisungyou@outlook.com>
Diff between Rdimtools versions 1.0.9 dated 2022-02-04 and 1.1.0 dated 2022-09-22
Rdimtools-1.0.9/Rdimtools/R/v1_feature_CSCOREG.R |only Rdimtools-1.0.9/Rdimtools/R/v1_feature_ENET.R |only Rdimtools-1.0.9/Rdimtools/R/v1_feature_LASSO.R |only Rdimtools-1.0.9/Rdimtools/R/v1_feature_PROCRUSTES.R |only Rdimtools-1.0.9/Rdimtools/R/v1_feature_RSR.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_ASI.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_BPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_FA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_LDA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_LMDS.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_MMC.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_MVP.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_NPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_OLPP.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_PPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_linear_SPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_BMDS.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_DPPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_HYDRA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_LAMP.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_MMDS.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_PHATE.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_PLP.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_RPCA.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_SNE.R |only Rdimtools-1.0.9/Rdimtools/R/v1_nonlinear_TSNE.R |only Rdimtools-1.1.0/Rdimtools/DESCRIPTION | 15 Rdimtools-1.1.0/Rdimtools/LICENSE | 4 Rdimtools-1.1.0/Rdimtools/MD5 | 185 +++---- Rdimtools-1.1.0/Rdimtools/NAMESPACE | 2 Rdimtools-1.1.0/Rdimtools/NEWS.md | 7 Rdimtools-1.1.0/Rdimtools/R/RcppExports.R | 16 Rdimtools-1.1.0/Rdimtools/R/linear_DNE.R | 4 Rdimtools-1.1.0/Rdimtools/R/linear_ULDA.R | 4 Rdimtools-1.1.0/Rdimtools/R/nonlinear_ISPE.R | 2 Rdimtools-1.1.0/Rdimtools/R/nonlinear_MVE.R | 3 Rdimtools-1.1.0/Rdimtools/R/nonlinear_SPE.R | 12 Rdimtools-1.1.0/Rdimtools/R/v1_feature_CSCORE.R | 53 +- Rdimtools-1.1.0/Rdimtools/R/v1_feature_FOSMOD.R |only Rdimtools-1.1.0/Rdimtools/R/v1_feature_FSCORE.R | 34 + Rdimtools-1.1.0/Rdimtools/R/v1_feature_LSCORE.R | 97 ++- Rdimtools-1.1.0/Rdimtools/R/v1_feature_PFA.R |only Rdimtools-1.1.0/Rdimtools/R/v1_linear_ADR.R | 37 - Rdimtools-1.1.0/Rdimtools/R/v1_linear_MDS.R | 33 + Rdimtools-1.1.0/Rdimtools/R/v1_linear_PCA.R | 51 +- Rdimtools-1.1.0/Rdimtools/R/v_feature_CSCOREG.R |only Rdimtools-1.1.0/Rdimtools/R/v_feature_ENET.R |only Rdimtools-1.1.0/Rdimtools/R/v_feature_LASSO.R |only Rdimtools-1.1.0/Rdimtools/R/v_feature_PROCRUSTES.R |only Rdimtools-1.1.0/Rdimtools/R/v_feature_RSR.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_ASI.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_BPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_FA.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_LDA.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_LMDS.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_MMC.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_MVP.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_NPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_OLPP.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_PPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_linear_SPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_BMDS.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_DPPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_HYDRA.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_LAMP.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_MMDS.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_PHATE.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_PLP.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_RPCA.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_SNE.R |only Rdimtools-1.1.0/Rdimtools/R/v_nonlinear_TSNE.R |only Rdimtools-1.1.0/Rdimtools/R/zzz.R | 5 Rdimtools-1.1.0/Rdimtools/README.md | 15 Rdimtools-1.1.0/Rdimtools/build/partial.rdb |binary Rdimtools-1.1.0/Rdimtools/build/vignette.rds |binary Rdimtools-1.1.0/Rdimtools/inst/CITATION |only Rdimtools-1.1.0/Rdimtools/inst/REFERENCES.bib | 25 - 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Title: Tools to Calibrate and Work with NEON Atmospheric Isotope Data
Description: Functions for downloading,
calibrating, and analyzing atmospheric isotope data bundled
into the eddy covariance data products of the National Ecological
Observatory Network (NEON) <https://www.neonscience.org>.
Calibration tools are provided for carbon and water isotope products.
Carbon isotope calibration details are found in Fiorella et al. (2021)
<doi:10.1029/2020JG005862>, and the readme
file at <https://github.com/lanl/NEONiso>. Tools for calibrating water
isotope products have been added as of 0.6.0, but have known deficiencies
and should be considered very experimental currently.
Author: Rich Fiorella [aut, cre]
Maintainer: Rich Fiorella <rfiorella@lanl.gov>
Diff between NEONiso versions 0.6.0 dated 2022-08-08 and 0.6.1 dated 2022-09-22
DESCRIPTION | 6 MD5 | 71 +++--- NAMESPACE | 1 NEWS.md | 11 R/calibrate_ambient_carbon_Bowling2003.R | 95 +++----- R/calibrate_ambient_carbon_linreg.R | 66 ++--- R/calibrate_ambient_water_isotopes.R | 75 +++--- R/calibrate_standards_carbon.R | 117 +++++----- R/calibrate_water.R | 124 ++++++----- R/calibrate_water_linreg_bymonth.R | 6 R/isotope_conversions.R | 75 +++--- R/output_functions.R | 258 +++++++++++++---------- R/reference_data_extraction.R | 2 R/reference_data_regression.R | 254 +++++++++++----------- R/reference_data_selection.R | 30 +- R/restructure_data.R | 313 +++++++++++++-------------- R/standard_corrections.R | 314 +++------------------------- R/time_functions.R | 26 +- R/utility_functions.R | 132 +++++------ build/vignette.rds |binary inst/doc/example_workflow.Rmd | 2 inst/doc/example_workflow.html | 13 - inst/doc/reference_corrections.R | 7 inst/doc/reference_corrections.Rmd | 37 +++ inst/doc/reference_corrections.html | 209 ++++++++++-------- man/calibrate_ambient_carbon_Bowling2003.Rd | 16 - man/calibrate_water_reference_data.Rd | 3 man/correct_carbon_ref_output.Rd | 4 man/ingest_data.Rd | 5 man/manage_local_EC_archive.Rd | 8 man/water_isotope_sites.Rd | 3 man/write_carbon_reference_data.Rd | 3 man/write_water_reference_data.Rd | 3 tests/testthat/test-data_ingestion.R | 4 vignettes/carb.rds |only vignettes/example_workflow.Rmd | 2 vignettes/reference_corrections.Rmd | 37 +++ 37 files changed, 1129 insertions(+), 1203 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-19 0.3.0
2020-03-12 0.2.0
2020-01-26 0.1.0
Title: Lasso Method for RCON(V,E) Models
Description: RCON(V, E) models are a kind of restriction of the Gaussian Graphical Models defined by a set of equality constraints on the entries of the concentration matrix. 'sglasso' package implements the structured graphical lasso (sglasso) estimator proposed in Abbruzzo et al. (2014) for the weighted l1-penalized RCON(V, E) model. Two cyclic coordinate algorithms are implemented to compute the sglasso estimator, i.e. a cyclic coordinate minimization (CCM) and a cyclic coordinate descent (CCD) algorithm.
Author: Luigi Augugliaro
Maintainer: Luigi Augugliaro <luigi.augugliaro@unipa.it>
Diff between sglasso versions 1.2.4 dated 2019-12-05 and 1.2.5 dated 2022-09-22
ChangeLog | 4 +- DESCRIPTION | 10 +++--- MD5 | 26 ++++++++--------- R/fglasso.R | 30 ++++++++++--------- R/gplot.fglasso.R | 24 +++++++-------- R/klcv.R | 26 +++++++++-------- R/loglik.R | 20 +++++++------ R/make_sglasso.R | 14 +++++---- R/mask2Te.R | 6 +-- R/mask2Tv.R | 6 +-- R/setDiff.R | 2 - R/sglasso.R | 66 ++++++++++++++++++++++++------------------- R/sglasso.fit.R | 74 +++++++++++++++++++++++++++---------------------- man/sglasso-package.Rd | 4 +- 14 files changed, 170 insertions(+), 142 deletions(-)
Title: Spectral Clustering-Based Method for Identifying B Cell Clones
Description: Provides a computational framework for identification of B cell clones from
Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. Three main
functions are included (identicalClones, hierarchicalClones, and spectralClones)
that perform clustering among sequences of BCRs/IGs (B cell receptors/immunoglobulins)
which share the same V gene, J gene and junction length.
Nouri N and Kleinstein SH (2018) <doi: 10.1093/bioinformatics/bty235>.
Nouri N and Kleinstein SH (2019) <doi: 10.1101/788620>.
Gupta NT, et al. (2017) <doi: 10.4049/jimmunol.1601850>.
Author: Nima Nouri [aut],
Edel Aron [ctb],
Susanna Marquez [ctb, cre],
Jason Vander Heiden [aut],
Steven Kleinstein [aut, cph]
Maintainer: Susanna Marquez <susanna.marquez@yale.edu>
Diff between scoper versions 1.2.0 dated 2021-11-02 and 1.2.1 dated 2022-09-22
DESCRIPTION | 19 ++-- MD5 | 24 ++--- NAMESPACE | 4 NEWS.md | 23 +++++ R/Functions.R | 97 ++++++++++++++------- R/Scoper.R | 7 - build/vignette.rds |binary inst/CITATION | 9 +- inst/doc/Scoper-Vignette.R | 5 + inst/doc/Scoper-Vignette.Rmd | 20 +++- inst/doc/Scoper-Vignette.pdf |binary tests/testthat/test_clone.R | 189 ++++++++++++++++++++++++++++++++++++++++++ vignettes/Scoper-Vignette.Rmd | 20 +++- 13 files changed, 353 insertions(+), 64 deletions(-)
Title: A DNA Reference Library Manager
Description: Reference database manager offering a set of functions
to import, organize, clean, filter, audit and export reference genetic
data. Provide functions to download sequence data from
Bold Systems (<https://www.boldsystems.org/>) and
NCBI GenBank <https://www.ncbi.nlm.nih.gov/genbank/>.
Designed as an environment for semi-automatic and assisted
construction of reference databases and to improve standardization
and repeatability in barcoding and metabarcoding studies.
Author: Francois Keck [aut, cre, cph]
Maintainer: Francois Keck <francois.keck@gmail.com>
Diff between refdb versions 0.1.0 dated 2022-09-19 and 0.1.1 dated 2022-09-22
DESCRIPTION | 6 +++--- MD5 | 6 +++--- R/refdb_checks.R | 7 ++++++- inst/doc/intro_refdb.html | 4 ++-- 4 files changed, 14 insertions(+), 9 deletions(-)
Title: Angular Distance Weighting Interpolation
Description: The irregularly-spaced data are interpolated onto regular latitude-longitude grids by weighting each station according to its distance and angle from the center of a search radius.
Author: Panfeng Zhang [aut, cre]
Maintainer: Panfeng Zhang <zhangpanfeng@cug.edu.cn>
Diff between adw versions 0.1.0 dated 2022-03-01 and 0.2.0 dated 2022-09-22
adw-0.1.0/adw/R/adw_land.R |only adw-0.1.0/adw/README.md |only adw-0.1.0/adw/man/adw_land.Rd |only adw-0.2.0/adw/DESCRIPTION | 23 +++---- adw-0.2.0/adw/MD5 | 12 +-- adw-0.2.0/adw/NAMESPACE | 17 ++--- adw-0.2.0/adw/NEWS.md |only adw-0.2.0/adw/R/adw.R | 134 ++++++++++++++++++++++++------------------ adw-0.2.0/adw/man/adw.Rd | 66 ++++++++++++++------ 9 files changed, 146 insertions(+), 106 deletions(-)
Title: Inference Tool for Antibody Haplotype
Description: Infers V-D-J haplotypes and gene deletions from AIRR-seq data for Ig and TR chains,
based on J, D, or V genes as anchor, by adapting a Bayesian framework.
It also calculates a Bayes factor, a number that indicates the certainty level of the inference, for each haplotyped gene.
Citation:
Gidoni, et al (2019) <doi:10.1038/s41467-019-08489-3>.
Peres and Gidoni, et al (2019) <doi:10.1093/bioinformatics/btz481>.
Author: Ayelet Peres [aut, cre],
Moriah Gidoni [aut],
Gur Yaari [aut, cph]
Maintainer: Ayelet Peres <peresay@biu.ac.il>
Diff between rabhit versions 0.2.1 dated 2022-02-16 and 0.2.4 dated 2022-09-22
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rabhit-0.2.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-12-1.pdf |binary rabhit-0.2.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-19-1.pdf |binary rabhit-0.2.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-21-1.pdf |binary rabhit-0.2.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-4-1.pdf |binary rabhit-0.2.4/rabhit/vignettes/RAbHIT-vignette_files/figure-latex/unnamed-chunk-8-1.pdf |binary 51 files changed, 91 insertions(+), 62 deletions(-)
Title: S3 Generics for Bayesian Analyses
Description: Provides S3 generic methods and some default implementations
for Bayesian analyses that generate Markov Chain Monte Carlo (MCMC)
samples. The purpose of 'universals' is to reduce package
dependencies and conflicts. The 'nlist' package implements many of
the methods for its 'nlist' class.
Author: Joe Thorley [aut, cre] ,
Kirill Mueller [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between universals versions 0.0.4 dated 2020-09-24 and 0.0.5 dated 2022-09-22
DESCRIPTION | 39 +++++++++++++++++---------------------- MD5 | 15 ++++++++------- NEWS.md | 12 ++++++++++++ R/dims.R | 2 +- README.md | 30 ++++++++++++++++-------------- inst/WORDLIST | 21 +++++++++++---------- man/figures/logo.png |only man/universals-package.Rd | 8 ++++---- tests/testthat/test-dims.R | 6 ++++++ 9 files changed, 75 insertions(+), 58 deletions(-)
Title: Find, Download and Process Sentinel-2 Data
Description: Functions to download Sentinel-2 optical images
and perform preliminary processing operations.
'sen2r' provides the instruments required to easily perform
(and eventually automate) the steps necessary to build a complete
Sentinel-2 processing chain.
A Graphical User Interface to facilitate data processing is also provided.
For additional documentation refer to the following article:
Ranghetti et al. (2020) <doi:10.1016/j.cageo.2020.104473>.
Author: Luigi Ranghetti [aut, cre] ,
Lorenzo Busetto [aut] ,
Marina Ranghetti [ctb]
Maintainer: Luigi Ranghetti <sen2r@ranghetti.info>
Diff between sen2r versions 1.5.1 dated 2022-04-12 and 1.5.3 dated 2022-09-22
DESCRIPTION | 12 - MD5 | 226 +++++++++++++++--------------- NEWS.md | 27 +++ R/add_rgb_image.R | 1 R/add_tile_suffix.R | 1 R/calcindex.R | 1 R/check_gui_deps.R | 1 R/check_param_list.R | 1 R/compute_s2_paths.R | 1 R/create_indices_db.R | 1 R/create_s2_dop.R | 1 R/dontuse.R | 1 R/expect_equal_crs.R | 1 R/fix_envi_format.R | 1 R/gdal_warp.R | 2 R/gdalwarp_grid.R | 1 R/gipp.R | 1 R/give_write_permission.R | 1 R/helpers_extent.R | 1 R/ignorelist.R | 1 R/init_python.R | 1 R/nn.R | 1 R/path_check.R | 1 R/print_message.R | 1 R/projpar.R | 1 R/s2_angles.R | 3 R/s2_defNA.R | 1 R/s2_download.R | 36 ++-- R/s2_gui.R | 14 - R/s2_rgb.R | 2 R/s2_thumbnails.R | 2 R/s2_translate.R | 39 +++-- R/safe_getMetadata.R | 77 +++++++--- R/safe_shortname.R | 2 R/safelist-class.R | 1 R/sen2r.R | 2 R/sen2r_process_report.R | 1 R/smooth_mask.R | 1 R/st_as_text_2.R | 1 R/st_crs2.R | 4 R/suppress_warnings.R | 1 R/tile_utmzone.R | 1 R/trace_functions.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/installation.R | 4 inst/doc/installation.Rmd | 7 inst/doc/installation.html | 8 - inst/doc/outstructure.Rmd | 2 inst/doc/outstructure.html | 2 man/add_rgb_image.Rd | 1 man/add_tile_suffix.Rd | 1 man/calcindex.Rd | 1 man/check_gui_deps.Rd | 1 man/check_param_list.Rd | 1 man/compute_s2_paths.Rd | 1 man/create_indices_db.Rd | 1 man/create_s2_dop.Rd | 1 man/dontuse.Rd | 1 man/expect_equal_crs.Rd | 1 man/fix_envi_format.Rd | 1 man/gdalwarp_grid.Rd | 1 man/gipp_init.Rd | 1 man/give_write_permission.Rd | 1 man/ignorelist.Rd | 1 man/init_python.Rd | 1 man/load_extent.Rd | 1 man/nn.Rd | 1 man/path_check.Rd | 1 man/print_message.Rd | 1 man/projpar.Rd | 1 man/raster2rgb.Rd | 1 man/s2_angles.Rd | 1 man/s2_defNA.Rd | 1 man/s2_rgb.Rd | 2 man/safe_getMetadata.Rd | 8 - man/safe_shortname.Rd | 2 man/safelist-class.Rd | 1 man/sen2r.Rd | 2 man/sen2r_process_report.Rd | 1 man/smooth_mask.Rd | 1 man/st_as_text_2.Rd | 1 man/st_crs2.Rd | 4 man/stack2rgb.Rd | 1 man/suppress_warnings.Rd | 1 man/tile_utmzone.Rd | 1 man/trace_function.Rd | 1 tests/testthat/setup-commons.R | 6 tests/testthat/setup-dependencies.R | 3 tests/testthat/setup-scihub_creds.R | 4 tests/testthat/test-abs2rel.R | 11 - tests/testthat/test-check_gcloud.R | 1 tests/testthat/test-gdal_warp.R | 12 + tests/testthat/test-load_binpaths.R | 1 tests/testthat/test-mountpoint.R | 1 tests/testthat/test-s2_calcindices.R | 6 tests/testthat/test-s2_download.R | 9 - tests/testthat/test-s2_list.R | 1 tests/testthat/test-s2_mask.R | 3 tests/testthat/test-s2_order.R | 1 tests/testthat/test-s2_rgb.R | 3 tests/testthat/test-safelist-class.R | 1 tests/testthat/test-scihub_login.R | 1 tests/testthat/test-sen2cor.R | 1 tests/testthat/test-sen2r-00_connection.R | 1 tests/testthat/test-sen2r-01_merge.R | 1 tests/testthat/test-sen2r-02_warp.R | 3 tests/testthat/test-sen2r-03_mask.R | 3 tests/testthat/test-sen2r-04_indices.R | 1 tests/testthat/test-sen2r-05_rgb.R | 1 tests/testthat/test-sen2r-06_ignorelist.R | 1 vignettes/installation.Rmd | 7 vignettes/outstructure.Rmd | 2 114 files changed, 427 insertions(+), 209 deletions(-)
Title: Practical Numerical Math Functions
Description: Provides a large number of functions from numerical analysis and
linear algebra, numerical optimization, differential equations,
time series, plus some well-known special mathematical functions.
Uses 'MATLAB' function names where appropriate to simplify porting.
Author: Hans W. Borchers [aut, cre]
Maintainer: Hans W. Borchers <hwborchers@googlemail.com>
Diff between pracma versions 2.3.8 dated 2022-03-04 and 2.4.2 dated 2022-09-22
DESCRIPTION | 12 ++++++------ MD5 | 33 +++++++++++++++++---------------- NEWS | 23 ++++++++++++++++++++++- NEWS.md | 20 ++++++++++++++++++++ R/circlefit.R | 5 +---- R/hessian.R | 42 ++++++++++++++++++++++++++++++++++++++++++ R/pp.R | 2 +- R/sigmoid.R | 17 ++++++++++------- R/sqrtm.R | 2 +- data/brown72.rda |binary data/titanium.rda |binary man/anms.Rd | 16 ++++++++++++++++ man/cart2sph.Rd | 18 ++++++++++++++++-- man/circlefit.Rd | 3 +-- man/distmat.Rd | 5 +++++ man/hessian.Rd | 2 +- man/hessutils.Rd |only man/sigmoid.Rd | 8 ++++++++ 18 files changed, 167 insertions(+), 41 deletions(-)
Title: Manage R Environments Better
Description: Provides a small set of functions for managing R environments, with defaults designed to encourage usage patterns that scale well to larger code bases. It provides: import_from(), a flexible way to assign bindings that defaults to the current environment; include(), a vectorized alternative to base::source() that also default to the current environment; and attach_eval() and attach_source(), a way to evaluate expressions in attached environments. Together, these (and other) functions pair to provide a robust alternative to base::library() and base::source().
Author: Tomasz Kalinowski [aut, cre]
Maintainer: Tomasz Kalinowski <kalinowskit@gmail.com>
Diff between envir versions 0.2.1 dated 2021-09-20 and 0.2.2 dated 2022-09-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ man/attach_source.Rd | 12 +++++++++--- man/set_library_default_pos.Rd | 4 +++- 5 files changed, 24 insertions(+), 12 deletions(-)
Title: Methods for Visualization of Computer Experiments Design and
Surrogate
Description: View 2D/3D sections, contour plots, mesh of excursion sets for computer experiments designs, surrogates or test functions.
Author: Yann Richet [aut, cre] ,
Yves Deville [aut],
Clement Chevalier [ctb]
Maintainer: Yann Richet <yann.richet@irsn.fr>
Diff between DiceView versions 2.0-1 dated 2020-11-27 and 2.0-2 dated 2022-09-22
DiceView-2.0-1/DiceView/man/Apply.fun.Rd |only DiceView-2.0-1/DiceView/man/Memoize.fun.Rd |only DiceView-2.0-1/DiceView/man/Vectorize.funD.Rd |only DiceView-2.0-1/DiceView/man/function-methods.Rd |only DiceView-2.0-1/DiceView/man/km-methods.Rd |only DiceView-2.0-1/DiceView/man/list-methods.Rd |only DiceView-2.0-2/DiceView/DESCRIPTION | 29 DiceView-2.0-2/DiceView/MD5 | 58 DiceView-2.0-2/DiceView/NAMESPACE | 6 DiceView-2.0-2/DiceView/R/Utils.R | 6 DiceView-2.0-2/DiceView/R/contourview.fun.R | 30 DiceView-2.0-2/DiceView/R/contourview.km.R | 30 DiceView-2.0-2/DiceView/R/contourview.list.R | 5 DiceView-2.0-2/DiceView/R/function.R | 32 DiceView-2.0-2/DiceView/R/mesh_set.R | 124 + DiceView-2.0-2/DiceView/R/sectionview.fun.R | 22 DiceView-2.0-2/DiceView/R/sectionview.km.R | 16 DiceView-2.0-2/DiceView/R/sectionview.list.R | 3 DiceView-2.0-2/DiceView/R/sectionview3d.fun.R | 36 DiceView-2.0-2/DiceView/R/sectionview3d.km.R | 46 DiceView-2.0-2/DiceView/R/sectionview3d.list.R | 11 DiceView-2.0-2/DiceView/R/wrapper.R | 1242 +++++++++--------- DiceView-2.0-2/DiceView/R/wrapper3d.R | 69 - DiceView-2.0-2/DiceView/README.md | 14 DiceView-2.0-2/DiceView/man/Apply.function.Rd |only DiceView-2.0-2/DiceView/man/Memoize.function.Rd |only DiceView-2.0-2/DiceView/man/Vectorize.function.Rd |only DiceView-2.0-2/DiceView/man/contourview.function.Rd |only DiceView-2.0-2/DiceView/man/contourview.km.Rd |only DiceView-2.0-2/DiceView/man/contourview.list.Rd |only DiceView-2.0-2/DiceView/man/mesh_exsets.Rd | 41 DiceView-2.0-2/DiceView/man/plot3d_mesh.Rd | 26 DiceView-2.0-2/DiceView/man/sectionview.function.Rd |only DiceView-2.0-2/DiceView/man/sectionview.km.Rd |only DiceView-2.0-2/DiceView/man/sectionview.list.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.Rd | 7 DiceView-2.0-2/DiceView/man/sectionview3d.function.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.km.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.list.Rd |only 39 files changed, 984 insertions(+), 869 deletions(-)
Title: Standardize Dates in Different Formats or with Missing Data
Description: There are many different formats dates are commonly
represented with: the order of day, month, or year can differ,
different separators ("-", "/", or whitespace) can be used, months can
be numerical, names, or abbreviations and year given as two digits or
four. 'datefixR' takes dates in all these different formats and
converts them to R's built-in date class. If 'datefixR' cannot
standardize a date, such as because it is too malformed, then the user
is told which date cannot be standardized and the corresponding ID for
the row. 'datefixR' also allows the imputation of missing days and
months with user-controlled behavior.
Author: Nathan Constantine-Cooke [aut, cre]
,
Jonathan Kitt [ctb, trl],
Antonio J. Perez-Luque [ctb, trl]
,
Kaique dos S. Alves [rev] ,
Al-Ahmadgaid B. Asaad [rev]
Maintainer: Nathan Constantine-Cooke <nathan.constantine-cooke@ed.ac.uk>
Diff between datefixR versions 1.1.0 dated 2022-08-12 and 1.2.0 dated 2022-09-22
DESCRIPTION | 12 ++- MD5 | 41 +++++++---- NEWS.md | 29 +++++++ R/internal.R | 63 +++++++++++++++-- R/months.R | 36 ++++++++- R/shinyapp.R | 2 README.md | 13 +++ build/vignette.rds |binary inst/WORDLIST | 10 ++ inst/doc/datefixR.R | 3 inst/doc/datefixR.Rmd | 13 +++ inst/doc/datefixR.html | 98 +++++++++++++++----------- inst/po |only po |only tests/testthat/test_fix_date_app.R | 3 tests/testthat/test_fix_date_char.R | 19 ++++- tests/testthat/test_languages.R | 132 ++++++++++++++++++++++++------------ vignettes/datefixR.Rmd | 13 +++ 18 files changed, 365 insertions(+), 122 deletions(-)
Title: Interface to the JavaScript Library 'amCharts 4'
Description: Creates JavaScript charts. The charts can be included in 'Shiny' apps and R markdown documents, or viewed from the R console and 'RStudio' viewer. Based on the JavaScript library 'amCharts 4' and the R packages 'htmlwidgets' and 'reactR'. Currently available types of chart are: vertical and horizontal bar chart, radial bar chart, stacked bar chart, vertical and horizontal Dumbbell chart, line chart, scatter chart, range area chart, gauge chart, boxplot chart, pie chart, and 100% stacked bar chart.
Author: Stephane Laurent [aut, cre],
Antanas Marcelionis [ctb, cph] ),
Terence Eden [ctb, cph] ),
Tom Alexander [ctb, cph] )
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between rAmCharts4 versions 1.5.0 dated 2021-10-10 and 1.6.0 dated 2022-09-22
DESCRIPTION | 8 MD5 | 60 NEWS.md | 135 R/amBarChart.R | 7 R/amBoxplotChart.R | 7 R/amDumbbellChart.R | 7 R/amGaugeChart.R | 7 R/amHorizontalBarChart.R | 7 R/amHorizontalDumbbellChart.R | 7 R/amLineChart.R | 2289 ++-- R/amPercentageBarChart.R | 731 - R/amPieChart.R | 7 R/amRadialBarChart.R | 7 R/amRangeAreaChart.R | 7 R/amScatterChart.R | 2073 ++-- R/amStackedBarChart.R | 7 inst/htmlwidgets/amChart4.js |20121 ++++++++++++++++++++------------------- inst/htmlwidgets/amChart4.js.map | 2 man/amBarChart.Rd | 3 man/amBoxplotChart.Rd | 3 man/amDumbbellChart.Rd | 3 man/amGaugeChart.Rd | 6 man/amHorizontalBarChart.Rd | 3 man/amHorizontalDumbbellChart.Rd | 3 man/amLineChart.Rd | 3 man/amPercentageBarChart.Rd | 3 man/amPieChart.Rd | 3 man/amRadialBarChart.Rd | 3 man/amRangeAreaChart.Rd | 3 man/amScatterChart.Rd | 3 man/amStackedBarChart.Rd | 3 31 files changed, 13096 insertions(+), 12435 deletions(-)
Title: Single Cell Oriented Reconstruction of PANDA Individual
Optimized Networks
Description: Constructs gene regulatory networks from single-cell gene expression data using the PANDA (Passing Attributes between Networks for Data Assimilation) algorithm.
Author: Daniel Osorio [aut, cre] ,
Marieke L. Kuijjer [aut]
Maintainer: Daniel Osorio <daniecos@uio.no>
Diff between SCORPION versions 1.0.0 dated 2022-09-21 and 1.0.1 dated 2022-09-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/runPANDA.R | 5 +++-- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Probabilistic Models to Analyze and Gaussianize Heavy-Tailed,
Skewed Data
Description: Lambert W x F distributions are a generalized framework to analyze
skewed, heavy-tailed data. It is based on an input/output system, where the
output random variable (RV) Y is a non-linearly transformed version of an input
RV X ~ F with similar properties as X, but slightly skewed (heavy-tailed).
The transformed RV Y has a Lambert W x F distribution. This package contains
functions to model and analyze skewed, heavy-tailed data the Lambert Way:
simulate random samples, estimate parameters, compute quantiles, and plot/
print results nicely. The most useful function is 'Gaussianize',
which works similarly to 'scale', but actually makes the data Gaussian.
A do-it-yourself toolkit allows users to define their own Lambert W x
'MyFavoriteDistribution' and use it in their analysis right away.
Author: Georg M. Goerg [aut, cre]
Maintainer: Georg M. Goerg <im@gmge.org>
Diff between LambertW versions 0.6.7 dated 2022-02-28 and 0.6.7-1 dated 2022-09-22
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/Gaussianize.R | 6 +++--- R/datasets.R | 4 ++-- README.md | 2 +- inst/doc/lambertw-overview.html | 4 ++-- man/Gaussianize.Rd | 6 +++--- man/datasets.Rd | 4 ++-- 9 files changed, 29 insertions(+), 25 deletions(-)
More information about topdowntimeratio at CRAN
Permanent link
Title: Sparse Group Lasso
Description: Efficient implementation of sparse group lasso with optional
bound constraints on the coefficients. It supports the use of a sparse
design matrix as well as returning coefficient estimates in a sparse
matrix. Furthermore, it correctly calculates the degrees of freedom to
allow for information criteria rather than cross-validation with very
large data. Finally, the interface to compiled code avoids unnecessary
copies and allows for the use of long integers.
Author: Daniel J. McDonald [aut, cre],
Xiaoxuan Liang [aut],
Aaron Cohen [aut]
Maintainer: Daniel J. McDonald <daniel@stat.ubc.ca>
Diff between sparsegl versions 0.4.0 dated 2022-09-05 and 0.5.0 dated 2022-09-22
DESCRIPTION | 57 ++++++++++++++++++++---------------------------- MD5 | 24 ++++++++++---------- NEWS.md | 7 +++++ R/cv.R | 6 ----- R/sgl_logit.R | 37 +++++++++++++++++-------------- R/sgl_ls.R | 18 +++++---------- R/sparsegl.R | 28 +++++++++++++++++++---- inst/doc/sparsegl.html | 6 ++--- src/log_sgl_subfuns.f90 | 5 ++-- src/sgl_subfuns.f90 | 3 +- src/sparsegl.f90 | 25 +++++++++++++++------ src/sparsegl_init.c | 4 +++ src/sparsegllog.f90 | 35 +++++++++++++++-------------- 13 files changed, 143 insertions(+), 112 deletions(-)
Title: Common Utilities for Other MOSAIC-Family Packages
Description: Common utilities used in other MOSAIC-family packages are
collected here.
Author: Randall Pruim <rpruim@calvin.edu>, Daniel T. Kaplan
<kaplan@macalester.edu>, Nicholas J. Horton <nhorton@amherst.edu>
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between mosaicCore versions 0.9.2 dated 2022-08-26 and 0.9.2.1 dated 2022-09-22
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test-makeFunction.R | 1 + 3 files changed, 6 insertions(+), 5 deletions(-)
Title: Some Additional Multiple Imputation Functions, Especially for
'mice'
Description: Contains functions for multiple imputation which
complements existing functionality in R.
In particular, several imputation methods for the
mice package (van Buuren & Groothuis-Oudshoorn, 2011,
<doi:10.18637/jss.v045.i03>) are implemented.
Main features of the miceadds package include
plausible value imputation (Mislevy, 1991,
<doi:10.1007/BF02294457>), multilevel imputation for
variables at any level or with any number of hierarchical
and non-hierarchical levels (Grund, Luedtke & Robitzsch,
2018, <doi:10.1177/1094428117703686>; van Buuren, 2018,
Ch.7, <doi:10.1201/9780429492259>), imputation using
partial least squares (PLS) for high dimensional
predictors (Robitzsch, Pham & Yanagida, 2016),
nested multiple imputation (Rubin, 2003,
<doi:10.1111/1467-9574.00217>), substantive model
compatible imputation (Bartlett et al., 2015,
<doi:10.1177/0962280214521348>), and features
for the generation of synthetic datasets
(Reiter, 2005, <doi:10. [...truncated...]
Author: Alexander Robitzsch [aut,cre] ,
Simon Grund [aut] ,
Thorsten Henke [ctb]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between miceadds versions 3.14-3 dated 2022-08-25 and 3.15-21 dated 2022-09-22
DESCRIPTION | 14 +++--- MD5 | 32 +++++++++----- NAMESPACE | 2 R/RcppExports.R | 2 R/datlist2Amelia.R |only R/extract_response_matrix.R |only R/mice.impute.catpmm.R |only R/mice.impute.pls.R | 10 ++-- R/mice_imputation_pls_do_impute.R | 23 +++++----- R/mice_imputation_pls_estimate_pls_regression.R | 53 +++++++++++++++++++++--- R/mice_imputation_pls_largest_correlations.R | 18 ++++---- R/mice_impute_catpmm_add_noise_x.R |only R/mice_impute_catpmm_create_dummies_y.R |only R/mice_impute_pls_catpmm_R2.R |only README.md | 6 +- build/partial.rdb |binary inst/NEWS | 15 ++++++ man/datlist2Amelia.Rd |only man/mice.impute.catpmm.Rd |only man/mice.impute.pls.Rd | 11 +++- src/RcppExports.cpp | 2 21 files changed, 132 insertions(+), 56 deletions(-)
Title: A Collection of Functions for Directional Data Analysis
Description: A collection of functions for directional data (including massive data, with millions of observations) analysis. Hypothesis testing, discriminant and regression analysis, MLE of distributions and more are included. The standard textbook for such data is the "Directional Statistics" by Mardia, K. V. and Jupp, P. E. (2000). Other references include a) Phillip J. Paine, Simon P. Preston Michail Tsagris and Andrew T. A. Wood (2018). An elliptically symmetric angular Gaussian distribution. Statistics and Computing 28(3): 689-697. <doi:10.1007/s11222-017-9756-4>. b) Tsagris M. and Alenazi A. (2019). Comparison of discriminant analysis methods on the sphere. Communications in Statistics: Case Studies, Data Analysis and Applications 5(4):467--491. <doi:10.1080/23737484.2019.1684854>. c) P. J. Paine, S. P. Preston, M. Tsagris and Andrew T. A. Wood (2020). Spherical regression models with general covariates and anisotropic errors. Statistics and Computing 30(1): 153--165. <doi:10. [...truncated...]
Author: Michail Tsagris, Giorgos Athineou, Christos Adam, Anamul Sajib, Eli Amson, Micah J. Waldstein
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Directional versions 5.5 dated 2022-05-24 and 5.6 dated 2022-09-22
DESCRIPTION | 8 +++--- MD5 | 46 +++++++++++++++++++-------------------- R/esag.mle.R | 12 +++++----- R/iag.reg.R | 10 ++++---- R/makefolds.R | 4 +-- R/mediandir_2.R | 5 ++-- R/mixvmf.mle.R | 52 +++++++++++++++++++++++++-------------------- R/vec.R | 6 +---- R/vmf.reg.R | 10 ++++---- man/Directional-package.Rd | 12 ++++++---- man/dvm.Rd | 4 +-- man/eul2rot.Rd | 2 - man/kent.contour.Rd | 2 - man/kent.datacontour.Rd | 2 - man/mixvmf.mle.Rd | 2 - man/multivm.mle.Rd | 2 - man/oceania.Rd | 2 - man/read.fbm.Rd | 2 - man/rot2eul.Rd | 2 - man/sphereplot.Rd | 2 - man/spml.mle.Rd | 6 ++--- man/vmf.contour.Rd | 2 - man/vmf.kerncontour.Rd | 2 - man/wood.mle.Rd | 2 - 24 files changed, 103 insertions(+), 96 deletions(-)
More information about adjustedCurves at CRAN
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Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.32.3 dated 2022-07-16 and 0.32.4 dated 2022-09-22
sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.RData |only sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.rdb |only sdcTable-0.32.3/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_6449cec6072951ca6c5fd4e6da6b9edd.rdx |only sdcTable-0.32.4/sdcTable/DESCRIPTION | 10 ++-- sdcTable-0.32.4/sdcTable/MD5 | 10 ++-- sdcTable-0.32.4/sdcTable/inst/doc/sdcTable.html | 23 +++++----- sdcTable-0.32.4/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_931a7d0e258181f18d729d01917b4c1e.RData |only sdcTable-0.32.4/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_931a7d0e258181f18d729d01917b4c1e.rdb |only sdcTable-0.32.4/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_931a7d0e258181f18d729d01917b4c1e.rdx |only 9 files changed, 22 insertions(+), 21 deletions(-)
Title: Helper Functions for 'mlr3'
Description: Frequently used helper functions and assertions used in
'mlr3' and its companion packages. Comes with helper functions for
functional programming, for printing, to work with 'data.table', as
well as some generally useful 'R6' classes. This package also
supersedes the package 'BBmisc'.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3misc versions 0.10.0 dated 2022-01-11 and 0.11.0 dated 2022-09-22
DESCRIPTION | 58 ++++++++++++++++++++------------- MD5 | 61 +++++++++++++++++++++++------------ NAMESPACE | 18 ++++++++++ NEWS.md | 8 ++++ R/Callback.R |only R/Context.R |only R/catn.R |only R/count_missing.R | 1 R/dictionary_sugar.R | 1 R/formulate.R | 6 +-- R/get_private.R | 30 +++++++++++++++++ R/insert_named.R | 9 +++++ R/leanify.R | 2 - R/purrr_map.R | 7 ---- R/require_namespaces.R | 4 +- R/set_params.R |only R/zzz.R | 1 man/Callback.Rd |only man/Context.Rd |only man/Dictionary.Rd | 66 +++++++++++++++++++------------------- man/as_callback.Rd |only man/assert_callback.Rd |only man/call_back.Rd |only man/catn.Rd |only man/clbk.Rd |only man/count_missing.Rd | 6 --- man/get_private-set.Rd |only man/insert_named.Rd | 3 + man/keep_in_bounds.Rd | 6 ++- man/mlr3misc-package.Rd | 2 - man/mlr_callbacks.Rd |only man/require_namespaces.Rd | 4 +- man/set_params.Rd |only tests/testthat.R | 4 +- tests/testthat/helper.R | 9 +++++ tests/testthat/test_Callback.R |only tests/testthat/test_Context.R |only tests/testthat/test_formulate.R | 7 ++++ tests/testthat/test_get_private.R |only tests/testthat/test_set_params.R |only tests/testthat/test_set_pars.R |only 41 files changed, 212 insertions(+), 101 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating random
and regular graphs, graph visualization, centrality methods and much more.
Author: See AUTHORS file.
Maintainer: Tamas Nepusz <ntamas@gmail.com>
Diff between igraph versions 1.3.4 dated 2022-07-19 and 1.3.5 dated 2022-09-22
DESCRIPTION | 6 MD5 | 117 ++++++++-------- NEWS.md | 18 ++ R/centrality.R | 33 +++- R/centralization.R | 11 + R/community.R | 23 ++- R/conversion.R | 2 R/games.R | 17 +- R/interface.R | 30 +++- R/layout.R | 19 +- R/plot.R | 5 R/scg.R | 2 configure | 20 +- configure.ac | 4 inst/NEWS.md | 18 ++ man/arpack.Rd | 6 man/centralize.Rd | 11 + man/cluster_leiden.Rd | 16 +- man/delete_edges.Rd | 9 + man/ego.Rd | 12 - man/eigen_centrality.Rd | 26 ++- man/get.edge.ids.Rd | 14 + man/gorder.Rd | 3 man/gsize.Rd | 3 man/layout_with_gem.Rd | 4 man/layout_with_kk.Rd | 2 man/modularity.igraph.Rd | 7 man/sample_pa.Rd | 8 - src/Makevars.ucrt | 2 src/Makevars.win | 2 src/core/community/community_misc.c | 22 +++ src/core/community/edge_betweenness.c | 25 ++- src/core/community/spinglass/clustertool.cpp | 8 - src/core/connectivity/components.c | 151 +++++++++++---------- src/core/core/grid.c | 6 src/core/core/psumtree.c | 8 - src/core/games/barabasi.c | 12 + src/core/io/dl.c | 9 - src/core/io/gml.c | 4 src/core/io/graphml.c | 2 src/core/io/lgl.c | 9 - src/core/io/ncol.c | 9 - src/core/io/pajek.c | 9 - src/core/layout/circular.c | 9 - src/core/layout/gem.c | 2 src/core/layout/large_graph.c | 40 +++++ src/core/layout/mds.c | 2 src/core/misc/scan.c | 2 src/core/misc/spanning_trees.c | 3 src/core/properties/degrees.c | 5 src/core/properties/girth.c | 10 - src/core/properties/triangles.c | 6 src/include/igraph_version.h | 2 tests/testthat/test_adjacency.spectral.embedding.R | 17 +- tests/testthat/test_bonpow.R | 1 tests/testthat/test_graph.adjacency.R | 6 tests/testthat/test_hsbm.R | 2 tests/testthat/test_laplacian.spectral.embedding.R | 13 + tests/testthat/test_layout_nicely.R | 4 tests/testthat/test_layout_null_singleton.R |only 60 files changed, 575 insertions(+), 273 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-02 0.46.2
2020-06-18 0.44
2018-11-29 0.40
2018-03-10 0.36
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-29 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-08-04 2.0.1
2019-04-25 2.0.0
2018-06-03 1.4.1
2017-11-30 1.4.0
2017-07-08 1.3.1
2017-06-22 1.3.0
2017-05-28 1.2.0
2017-05-14 1.1.0
2017-05-02 1.0.2
2017-04-28 1.0.1
2017-04-25 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-02 0.1.4
2020-07-01 0.1.2
2020-06-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-07-02 0.6
Title: Efficient Plotting of Large-Sized Data
Description: A tool to plot data with large sample size using 'shiny' and 'plotly'.
Relatively small samples are chosen from the data using an appropriate algorithm according to a user-defined x range.
Jonas Van Der Donckt, Jeroen Van Der Donckt, Emiel Deprost (2022) <https://github.com/predict-idlab/plotly-resampler>.
Author: Junta Tagusari [aut, cre, cph],
Jonas Van Der Donckt [cph],
Jeroen Van Der Donckt [cph],
Emiel Deprost [cph]
Maintainer: Junta Tagusari <j.tagusari@eng.hokudai.ac.jp>
Diff between shinyHugePlot versions 0.0.1 dated 2022-08-22 and 0.1.0 dated 2022-09-22
shinyHugePlot-0.0.1/shinyHugePlot/R/plotlyHugeData.R |only shinyHugePlot-0.0.1/shinyHugePlot/man/max_aggregator.Rd |only shinyHugePlot-0.0.1/shinyHugePlot/man/mean_aggregator.Rd |only shinyHugePlot-0.0.1/shinyHugePlot/man/median_aggregator.Rd |only shinyHugePlot-0.0.1/shinyHugePlot/man/min_aggregator.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/DESCRIPTION | 10 shinyHugePlot-0.1.0/shinyHugePlot/MD5 | 73 - shinyHugePlot-0.1.0/shinyHugePlot/NAMESPACE | 8 shinyHugePlot-0.1.0/shinyHugePlot/NEWS.md | 5 shinyHugePlot-0.1.0/shinyHugePlot/R/abstract_aggregator.R | 2 shinyHugePlot-0.1.0/shinyHugePlot/R/abstract_downsampler.R | 255 ++++-- shinyHugePlot-0.1.0/shinyHugePlot/R/aggregators.R | 378 ++++------ shinyHugePlot-0.1.0/shinyHugePlot/R/apply_downsampler.R | 15 shinyHugePlot-0.1.0/shinyHugePlot/R/shinyHugePlot.R |only shinyHugePlot-0.1.0/shinyHugePlot/R/shiny_downsampler.R | 232 ++++-- shinyHugePlot-0.1.0/shinyHugePlot/R/shiny_hugeplot.R | 132 ++- shinyHugePlot-0.1.0/shinyHugePlot/R/updatePlotlyH.R | 42 - shinyHugePlot-0.1.0/shinyHugePlot/R/utils.R | 54 + shinyHugePlot-0.1.0/shinyHugePlot/README.md | 54 - shinyHugePlot-0.1.0/shinyHugePlot/man/abstract_aggregator.Rd | 2 shinyHugePlot-0.1.0/shinyHugePlot/man/abstract_downsampler.Rd | 76 +- shinyHugePlot-0.1.0/shinyHugePlot/man/apply_downsampler.Rd | 15 shinyHugePlot-0.1.0/shinyHugePlot/man/custom_func_aggregator.Rd | 5 shinyHugePlot-0.1.0/shinyHugePlot/man/custom_stat_aggregator.Rd | 18 shinyHugePlot-0.1.0/shinyHugePlot/man/eLTTB_aggregator.Rd | 3 shinyHugePlot-0.1.0/shinyHugePlot/man/generate_matrix.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/list_aggregators.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/min_max_aggregator.Rd | 5 shinyHugePlot-0.1.0/shinyHugePlot/man/min_max_ovlp_aggregator.Rd | 4 shinyHugePlot-0.1.0/shinyHugePlot/man/nanosecond_to_label.Rd | 5 shinyHugePlot-0.1.0/shinyHugePlot/man/nth_pnt_aggregator.Rd | 2 shinyHugePlot-0.1.0/shinyHugePlot/man/null_aggregator.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/numeric_to_label.Rd | 5 shinyHugePlot-0.1.0/shinyHugePlot/man/range_stat_aggregator.Rd | 28 shinyHugePlot-0.1.0/shinyHugePlot/man/shinyHugePlot.Rd | 2 shinyHugePlot-0.1.0/shinyHugePlot/man/shiny_downsampler.Rd | 47 - shinyHugePlot-0.1.0/shinyHugePlot/man/shiny_hugeplot.Rd | 97 +- shinyHugePlot-0.1.0/shinyHugePlot/man/updatePlotlyH.Rd | 20 shinyHugePlot-0.1.0/shinyHugePlot/tests/dash/dash_downsampler.R | 2 shinyHugePlot-0.1.0/shinyHugePlot/tests/manual/test-addtrace.R | 10 shinyHugePlot-0.1.0/shinyHugePlot/tests/manual/test-wrappers.R | 44 - shinyHugePlot-0.1.0/shinyHugePlot/tests/testthat/test-aggregator.R | 2 42 files changed, 997 insertions(+), 655 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-11 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-03 0.3.1