Title: Calculate Indices of Dynamic Interaction for Wildlife Tracking
Data
Description: Dynamic interaction refers to spatial-temporal associations
in the movements of two (or more) animals. This package provides tools for
calculating a suite of indices used for quantifying dynamic interaction with
wildlife telemetry data. For more information on each of the methods employed
see the references within. The package (as of version >= 0.3) also has new tools for
automating contact analysis in large tracking datasets. The package draws
heavily on the classes and methods developed in the 'adehabitat' packages.
Author: Jed Long [aut, cre]
Maintainer: Jed Long <jed.long@uwo.ca>
Diff between wildlifeDI versions 0.4.1 dated 2021-06-16 and 0.5.0 dated 2022-09-30
DESCRIPTION | 12 MD5 | 98 +- NAMESPACE | 2 NEWS | 7 R/Ca.R | 9 R/Cr.R | 1 R/Cs.r | 19 R/DI.R | 2 R/Don.R | 26 R/FilterTraj.r | 10 R/HAI.R | 28 R/IAB.R | 79 - R/Lixn.R | 99 +- R/Prox.R | 22 R/conContext.R | 4 R/conDisplacement.R | 9 R/conMatrix.R | 4 R/conPairs.R | 4 R/conPhase.R | 4 R/conProcess.R | 5 R/conSpatial.r | 4 R/conSummary.R | 4 R/conTemporal.R | 4 R/ltraj2sf.R | 5 R/sf2ltraj.R |only R/wildlifeDI-package.r | 4 README.md | 379 ++++++-- build/vignette.rds |binary inst/CITATION | 17 inst/doc/wildlifeDI-vignette-contact_analysis.html | 680 +++++++++++---- inst/doc/wildlifeDI-vignette.R | 25 inst/doc/wildlifeDI-vignette.html | 911 +++++++++++++++++---- inst/doc/wildlifeDI-vignette.rmd | 37 man/Ca.Rd | 2 man/Cr.Rd | 3 man/Don.Rd | 2 man/IAB.Rd | 2 man/Lixn.Rd | 21 man/conContext.Rd | 4 man/conDisplacement.Rd | 4 man/conMatrix.Rd | 4 man/conPairs.Rd | 4 man/conPhase.Rd | 4 man/conProcess.Rd | 4 man/conSpatial.Rd | 4 man/conSummary.Rd | 4 man/conTemporal.Rd | 4 man/ltraj2sf.Rd | 4 man/sf2ltraj.Rd |only man/wildlifeDI-package.Rd | 2 vignettes/wildlifeDI-vignette.rmd | 37 51 files changed, 1943 insertions(+), 680 deletions(-)
Title: A Utility Package to Help you Deal with "Pignas"
Description: Pigna [_pìn'n'a_] is the Italian word for pine cone. In
jargon, it is used to identify a task which is boring, banal,
annoying, painful, frustrating and maybe even with a not so beautiful
or rewarding result, just like the obstinate act of trying to
challenge yourself in extracting pine nuts from a pine cone, provided
that, in the end, you will find at least one inside it. Here you can
find a backpack of functions to be used to solve small everyday
problems of coding or analyzing (clinical) data, which would be
normally solved using quick-and-dirty patches. You will be able to
convert 'Hmisc' and 'rms' summary()es into data.frames ready to be
rendered by 'pander' and 'knitr'. You can access easy-to-use wrappers
to activate essential but useful progress bars (from 'progress') into
your loops or functionals. Easy setup and control Telegram's bots
(from 'telegram.bot') to send messages or to divert error messages to
a Telegram's chat. You also have some utilities helping you in the
devel [...truncated...]
Author: Corrado Lanera [aut, cre, cph]
Maintainer: Corrado Lanera <corrado.lanera@gmail.com>
Diff between depigner versions 0.8.4 dated 2021-01-11 and 0.9.0 dated 2022-09-30
DESCRIPTION | 37 - MD5 | 149 ++-- NAMESPACE | 129 +-- NEWS.md | 230 +++--- R/adjust_p.R | 180 ++--- R/chat_id_from_name.R | 84 +- R/check_for_bot_options.R | 70 +- R/ci2p.R | 96 +- R/data.R | 18 R/depigner-package.R | 44 - R/errors_to_telegram.R | 86 +- R/gdp.R | 86 +- R/htypes.R | 438 ++++++------ R/imported_from.R | 76 +- R/install_pkg_set.R | 86 +- R/paired_test_categorical.R | 292 ++++---- R/paired_test_continuous.R | 420 ++++++------ R/pb_len.R | 94 +- R/pkg_sets.R | 266 +++---- R/please_install.R | 86 +- R/send_to_telegram.R | 190 ++--- R/start_bot_for_chat.R | 198 ++--- R/summary_interact.R | 292 ++++---- R/tidy_summary.R | 250 +++---- R/use_ui.R | 204 ++--- R/usethis_utils.R | 359 +++++----- R/utils-pipe.R | 22 R/utils.R | 158 ++-- R/view_in_excel.R |only R/zzz.R | 46 - README.md | 900 +++++++++++++------------- inst/WORDLIST | 249 +++---- inst/bib/doc-pkg.bib | 94 +- inst/templates/utils-depigner.R | 12 man/Arthritis.Rd | 38 - man/adjust_p.Rd | 70 +- man/check_for_bot_options.Rd | 40 - man/ci2p.Rd | 98 +- man/depigner-package.Rd | 52 - man/errors_to_telegram.Rd | 56 - man/gdp.Rd | 62 - man/htype.Rd | 240 +++--- man/imported_from.Rd | 46 - man/install_pkg_set.Rd | 78 +- man/is_hdesc.Rd | 104 +-- man/paired_test_categorical.Rd | 126 +-- man/paired_test_continuous.Rd | 154 ++-- man/pb_len.Rd | 98 +- man/pipe.Rd | 24 man/pkg_sets.Rd | 225 +++--- man/please_install.Rd | 46 - man/send_to_telegram.Rd | 156 ++-- man/start_bot_for_chat.Rd | 138 +-- man/summary_interact.Rd | 158 ++-- man/tidy_summary.Rd | 168 ++-- man/use_ui.Rd | 66 - man/view_in_excel.Rd |only tests/spelling.R | 12 tests/testthat.R | 14 tests/testthat/helper.R | 170 ++-- tests/testthat/test-adjust_p.R | 52 - tests/testthat/test-chat_id_from_name.R | 54 - tests/testthat/test-check_for_bot_options.R | 44 - tests/testthat/test-check_pkg.R | 20 tests/testthat/test-ci2p.R | 70 +- tests/testthat/test-gdp.R | 20 tests/testthat/test-htypes.R | 208 +++--- tests/testthat/test-paired_test_categorical.R | 172 ++-- tests/testthat/test-paired_test_continuous.R | 184 ++--- tests/testthat/test-pb_len.R | 22 tests/testthat/test-send_to_telegram.R | 52 - tests/testthat/test-start_bot_for_chat.R | 86 +- tests/testthat/test-summary_interact.R | 186 ++--- tests/testthat/test-tidy_summary.R | 120 +-- tests/testthat/test-use_ui.R | 22 tests/testthat/test-utils.R | 104 +-- tests/testthat/test-view_in_excel.R |only 77 files changed, 4925 insertions(+), 4871 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.7.3 dated 2022-08-19 and 2.7.4 dated 2022-09-30
DESCRIPTION | 6 +-- MD5 | 18 +++++----- NAMESPACE | 1 NEWS.md | 10 +++++ R/fetchOSD.R | 54 +++++++++++++++++------------- R/fetchSCAN.R | 2 - R/get_SDA_property.R | 59 +++++++++++++++++++-------------- R/uncode.R | 3 + build/partial.rdb |binary tests/testthat/test-get_SDA_property.R | 9 ++--- 10 files changed, 96 insertions(+), 66 deletions(-)
Title: Czekanowski's Diagrams
Description: Allows for production of Czekanowski's Diagrams. See K. Bartoszek, A. Vasterlund (2020) <doi:10.2478/bile-2020-0008>.
Author: Albin Vasterlund [aut],
Krzysztof Bartoszek [cre, aut, ths],
Ying Luo [aut],
Piotr Jaskulski [ctb]
Maintainer: Krzysztof Bartoszek <krzbar@protonmail.ch>
Diff between RMaCzek versions 1.4 dated 2022-03-18 and 1.5.0 dated 2022-09-30
RMaCzek-1.4/RMaCzek/man/RMaCzek-internal.Rd |only RMaCzek-1.5.0/RMaCzek/DESCRIPTION | 20 RMaCzek-1.5.0/RMaCzek/GPL-3 |only RMaCzek-1.5.0/RMaCzek/MD5 | 46 - RMaCzek-1.5.0/RMaCzek/NAMESPACE | 10 RMaCzek-1.5.0/RMaCzek/R/RMaCzek.R | 5 RMaCzek-1.5.0/RMaCzek/R/cluster_distance.R |only RMaCzek-1.5.0/RMaCzek/R/czek_matrix.R | 796 ++++++++++---------- RMaCzek-1.5.0/RMaCzek/R/data.R |only RMaCzek-1.5.0/RMaCzek/R/plot.czek_matrix.R | 324 +++----- RMaCzek-1.5.0/RMaCzek/R/read_maczek.R | 21 RMaCzek-1.5.0/RMaCzek/R/register_seriate_ga.R | 5 RMaCzek-1.5.0/RMaCzek/inst/extdata/Rdata.rdb |only RMaCzek-1.5.0/RMaCzek/inst/extdata/Rdata.rds |only RMaCzek-1.5.0/RMaCzek/inst/extdata/Rdata.rdx |only RMaCzek-1.5.0/RMaCzek/man/RMaCzek.Rd | 65 - RMaCzek-1.5.0/RMaCzek/man/Um_factor.Rd | 18 RMaCzek-1.5.0/RMaCzek/man/cluster_dist.Rd |only RMaCzek-1.5.0/RMaCzek/man/czek_matrix.Rd | 199 ++--- RMaCzek-1.5.0/RMaCzek/man/internet_availability.Rd | 77 - RMaCzek-1.5.0/RMaCzek/man/manual_reorder.Rd | 36 RMaCzek-1.5.0/RMaCzek/man/plot.czek_matrix.Rd | 125 +-- RMaCzek-1.5.0/RMaCzek/man/print.czek_matrix.Rd | 34 RMaCzek-1.5.0/RMaCzek/man/print.czek_matrix_dist.Rd | 36 RMaCzek-1.5.0/RMaCzek/man/read_maczek_file.Rd | 36 RMaCzek-1.5.0/RMaCzek/man/seals_similarities.Rd | 52 - RMaCzek-1.5.0/RMaCzek/man/skulls_distances.Rd | 65 - RMaCzek-1.5.0/RMaCzek/man/urns.Rd | 51 - 28 files changed, 853 insertions(+), 1168 deletions(-)
Title: Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Description: Provides tools for importing and working with bibliographic
references. It greatly enhances the 'bibentry' class by providing a class
'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8'
encoding, and can be easily searched by any field, by date ranges, and by
various formats for name lists (author by last names, translator by full names,
etc.). Entries can be updated, combined, sorted, printed in a number of styles,
and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and
converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and
'Zotero' are provided for importing references and references can be created
from locally stored 'PDF' files using 'Poppler'. Includes functions for citing
and generating a bibliography with hyperlinks for documents prepared with
'RMarkdown' or 'RHTML'.
Author: Mathew W. McLean [aut, cre]
Maintainer: Mathew W. McLean <mathew.w.mclean@gmail.com>
Diff between RefManageR versions 1.3.0 dated 2020-11-13 and 1.4.0 dated 2022-09-30
DESCRIPTION | 12 +-- MD5 | 98 ++++++++++++------------- NAMESPACE | 2 R/04InternalFunctions.R | 114 ++++++++++++++--------------- R/05makeBibLatex.R | 16 ++-- R/06BibEntry.R | 2 R/07makeBibLatexAuthoryear.R | 12 +-- R/09sort.R | 2 R/BibEntryExtractOp.R | 134 ++++++++++++++++------------------ R/BibEntryReplaceOp.R | 16 +++- R/CommonFormatFuns.R | 24 +++--- R/GetBibEntryWithDOI.R | 9 +- R/GetDOIs.R | 4 - R/ReadBib.R | 20 +++-- R/ReadCrossRef.R | 20 ++--- R/ReadGS.R | 4 - R/ReadPDFs.R | 17 +++- R/ReadPDFsSupport.R | 160 ++++++++++++++++++++--------------------- R/ReadPubMed.R | 64 ++++++++-------- R/RefManageR-package.R | 54 ++++++------- R/WriteBib.R | 2 R/format.R | 8 +- R/open.BibEntry.R | 4 - R/print.R | 2 R/rmdCite.R | 8 +- R/toRd.R | 110 +++++++++++++++------------- README.md | 3 build/vignette.rds |binary inst/Bib/RJC.bib | 18 ++-- inst/NEWS.md | 17 +++- inst/doc/TestAlphabetic.Rmd | 14 ++- inst/doc/TestAlphabetic.html | 20 +---- inst/doc/TestRmd.Rmd | 16 ++-- inst/doc/TestRmd.html | 9 -- inst/doc/manual.pdf |binary man/BibEntry.Rd | 2 man/GetBibEntryWithDOI.Rd | 4 - man/ReadBib.Rd | 13 +++ man/ReadPubMed.Rd | 2 man/RefManageR-package.Rd | 28 +++---- man/SearchBib.Rd | 96 +++++++++++------------- man/print.BibEntry.Rd | 2 man/sort.BibEntry.Rd | 2 man/subset-.BibEntry.Rd | 16 +++- tests/testthat/test-crossref.R | 45 ++++++----- tests/testthat/test-methods.R | 12 +++ tests/testthat/test-pubmed.R | 30 +++---- tests/testthat/test-readPDF.R | 16 +--- vignettes/TestAlphabetic.Rmd | 14 ++- vignettes/TestRmd.Rmd | 16 ++-- 50 files changed, 697 insertions(+), 616 deletions(-)
Title: Neighborhood Deprivation Indices
Description: Computes various metrics of socio-economic deprivation and disparity in
the United States. Some metrics are considered "spatial" because they
consider the values of neighboring (i.e., adjacent) census geographies in
their computation, while other metrics are "aspatial" because they only
consider the value within each census geography. Two types of aspatial
neighborhood deprivation indices (NDI) are available: including:
(1) based on Messer et al. (2006) <doi:10.1007/s11524-006-9094-x>
and (2) based on Andrews et al. (2020) <doi:10.1080/17445647.2020.1750066>
and Slotman et al. (2022) <doi:10.1016/j.dib.2022.108002>
who use variables chosen by Roux and Mair (2010)
<doi:10.1111/j.1749-6632.2009.05333.x>. Both are a decomposition
of multiple demographic characteristics from the U.S. Census Bureau
American Community Survey 5-year estimates (ACS-5; 2010 onward). Using data
from the ACS-5 (2009 onward), the package can also (1) compute the spatial
Racial Isolation Ind [...truncated...]
Author: Ian D. Buller [aut, cre, cph] ,
NCI [cph, fnd]
Maintainer: Ian D. Buller <ian.buller@nih.gov>
Diff between ndi versions 0.1.1 dated 2022-08-15 and 0.1.2 dated 2022-09-30
DESCRIPTION | 24 + MD5 | 54 ++- NAMESPACE | 3 NEWS.md | 37 ++ R/DCtracts2020.R |only R/anthopolos.R | 72 ++--- R/bravo.R | 48 +-- R/gini.R | 39 +- R/globals.R | 18 + R/krieger.R |only R/messer.R | 322 ++++++++++++----------- R/package.R | 12 R/powell_wiley.R | 325 ++++++++++++----------- README.md | 179 +++++++++++- data |only inst/CITATION | 70 ++++- inst/doc/vignette.html | 517 +++++++++++++++++++++++-------------- man/DCtracts2020.Rd |only man/anthopolos.Rd | 34 +- man/bravo.Rd | 10 man/gini.Rd | 6 man/krieger.Rd |only man/messer.Rd | 27 + man/ndi-package.Rd | 10 man/powell_wiley.Rd | 25 + tests/testthat/test-anthopolos.R | 2 tests/testthat/test-bravo.R | 8 tests/testthat/test-krieger.R |only tests/testthat/test-messer.R | 9 tests/testthat/test-powell_wiley.R | 7 vignettes/vignette.Rmd | 201 ++++++++++---- 31 files changed, 1324 insertions(+), 735 deletions(-)
Title: Clean and Analyze Continuous Glucose Monitor Data
Description: This code provides several different functions for cleaning and analyzing continuous glucose monitor data. Currently it works with 'Dexcom', 'iPro 2', 'Diasend', 'Libre', or 'Carelink' data. The cleandata() function takes a directory of CGM data files and prepares them for analysis. cgmvariables() iterates through a directory of cleaned CGM data files and produces a single spreadsheet with data for each file in either rows or columns. The column format of this spreadsheet is compatible with REDCap data upload. cgmreport() also iterates through a directory of cleaned data, and produces PDFs of individual and aggregate AGP plots. Please visit <https://github.com/childhealthbiostatscore/R-Packages/> to download the new-user guide.
Author: Tim Vigers [aut, cre]
Maintainer: Tim Vigers <timothy.vigers@cuanschutz.edu>
Diff between cgmanalysis versions 2.7.4 dated 2022-09-07 and 2.7.5 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/cleandata.R | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: A Simulation Framework for Spatiotemporal Population Genetics
Description: A framework for simulating spatially explicit genomic data which
leverages real cartographic information for programmatic and visual encoding
of spatiotemporal population dynamics on real geographic landscapes. Population
genetic models are then automatically executed by the 'SLiM' software by Haller
et al. (2019) <doi:10.1093/molbev/msy228> behind the scenes, using a custom
built-in simulation 'SLiM' script. Additionally, fully abstract spatial models
not tied to a specific geographic location are supported, and users can also
simulate data from standard, non-spatial, random-mating models. These can be
simulated either with the 'SLiM' built-in back-end script, or using an efficient
coalescent population genetics simulator 'msprime' by Baumdicker et al. (2022)
<doi:10.1093/genetics/iyab229> with a custom-built 'Python' script bundled with the
R package. Simulated genomic data is saved in a tree-sequence format and can be
loaded, manipulated, and summarised using tree-sequen [...truncated...]
Author: Martin Petr [aut, cre]
Maintainer: Martin Petr <contact@bodkan.net>
Diff between slendr versions 0.3.0 dated 2022-08-19 and 0.4.0 dated 2022-09-30
DESCRIPTION | 8 MD5 | 103 +- NEWS.md | 24 R/compilation.R | 158 ++- R/interface.R | 9 R/print.R | 7 R/tree-sequences.R | 43 R/utils.R | 3 README.md | 26 build/vignette.rds |binary inst/doc/vignette-00-installation.Rmd | 8 inst/doc/vignette-00-installation.html | 28 inst/doc/vignette-01-tutorial.R | 8 inst/doc/vignette-01-tutorial.Rmd | 36 inst/doc/vignette-01-tutorial.html | 297 ++---- inst/doc/vignette-02-grid-model.html | 19 inst/doc/vignette-03-interactions.html | 13 inst/doc/vignette-04-nonspatial-models.html | 13 inst/doc/vignette-05-tree-sequences.Rmd | 4 inst/doc/vignette-05-tree-sequences.html | 35 inst/doc/vignette-06-locations.Rmd | 2 inst/doc/vignette-06-locations.html | 32 inst/doc/vignette-07-backends.html | 13 inst/doc/vignette-08-nonslendr-tskit.html | 26 inst/doc/vignette-09-paper.R | 407 ++++---- inst/doc/vignette-09-paper.Rmd | 296 ++---- inst/doc/vignette-09-paper.html | 786 ++++++++--------- inst/extdata/models/introgression.trees |binary inst/extdata/models/introgression/checksums.tsv | 4 inst/extdata/models/introgression/script.py | 457 +++++---- inst/extdata/models/introgression/script.slim | 2 inst/extdata/models/msprime.trees |binary inst/scripts/__pycache__ |only inst/scripts/script.py | 461 +++++---- man/as.phylo.slendr_phylo.Rd | 1 man/check_dependencies.Rd | 1 man/compile_model.Rd | 5 man/msprime.Rd | 5 man/slim.Rd | 5 man/ts_eigenstrat.Rd | 2 man/ts_load.Rd | 2 tests/testthat/manual_ts_nodes+edges+inds+pops+muts.py |only tests/testthat/manual_ts_nodes+edges+inds+pops.py |only tests/testthat/manual_ts_nodes+edges+inds.py |only tests/testthat/manual_ts_nodes+edges.py |only tests/testthat/test-manual-ts.R |only tests/testthat/test-msprime.R | 17 tests/testthat/test-nonserialized.R |only tests/testthat/test-serialization.R | 8 tests/testthat/test-trees.R | 4 tests/testthat/test-ts.R | 8 vignettes/vignette-00-installation.Rmd | 8 vignettes/vignette-01-tutorial.Rmd | 36 vignettes/vignette-05-tree-sequences.Rmd | 4 vignettes/vignette-06-locations.Rmd | 2 vignettes/vignette-09-paper.Rmd | 296 ++---- 56 files changed, 1918 insertions(+), 1814 deletions(-)
Title: Utilities for Interacting with the 'RStudio Connect' Server API
Description: Provides a helpful 'R6' class and methods for interacting with
the 'RStudio Connect' Server API along with some meaningful utility functions
for regular tasks. API documentation varies by 'RStudio Connect' installation
and version, but the latest documentation is also hosted publicly at
<https://docs.rstudio.com/connect/api/>.
Author: Sean Lopp [aut],
Cole Arendt [aut, cre],
RStudio PBC [cph, fnd]
Maintainer: Cole Arendt <cole@rstudio.com>
Diff between connectapi versions 0.1.1.1 dated 2022-07-21 and 0.1.2 dated 2022-09-30
DESCRIPTION | 8 MD5 | 58 ++--- NEWS.md | 13 + R/connect.R | 10 R/connectapi.R | 2 R/ptype.R | 1 R/utils.R | 10 build/connectapi.pdf |binary inst/ci/test-connect-lic.yml | 3 inst/ci/test-connect.yml | 2 inst/doc/customize-http.R | 12 + inst/doc/customize-http.Rmd | 19 + inst/doc/customize-http.html | 71 ++++-- inst/doc/getting-started.html | 17 + man/Bundle.Rd | 18 - man/Content.Rd | 198 +++++++++--------- man/ContentTask.Rd | 112 +++++----- man/EnvironmentR6.Rd | 112 +++++----- man/RStudioConnect.Rd | 378 ++++++++++++++++++------------------ man/Task.Rd | 42 ++-- man/Vanity.Rd | 100 ++++----- man/VariantR6.Rd | 182 ++++++++--------- man/VariantSchedule.Rd | 162 +++++++-------- man/VariantTask.Rd | 136 ++++++------ man/connect.Rd | 6 man/connectapi-package.Rd | 4 man/deploy.Rd | 3 tests/integrated/_snaps/schedule.md | 20 - tests/integrated/test-content.R | 2 vignettes/customize-http.Rmd | 19 + 30 files changed, 904 insertions(+), 816 deletions(-)
Title: Robust Data-Driven Statistical Inference in
Regression-Discontinuity Designs
Description: Regression-discontinuity (RD) designs are quasi-experimental research designs popular in social, behavioral and natural sciences. The RD design is usually employed to study the (local) causal effect of a treatment, intervention or policy. This package provides tools for data-driven graphical and analytical statistical inference in RD designs: rdrobust() to construct local-polynomial point estimators and robust confidence intervals for average treatment effects at the cutoff in Sharp, Fuzzy and Kink RD settings, rdbwselect() to perform bandwidth selection for the different procedures implemented, and rdplot() to conduct exploratory data analysis (RD plots).
Author: Sebastian Calonico <sebastian.calonico@columbia.edu>, Matias D. Cattaneo <cattaneo@princeton.edu>, Max H. Farrell <max.farrell@chicagobooth.edu>, Rocio Titiunik <titiunik@princeton.edu>
Maintainer: Sebastian Calonico <sebastian.calonico@columbia.edu>
Diff between rdrobust versions 2.0.2 dated 2022-06-16 and 2.0.3 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/rdbwselect.R | 43 +++++++++++++++++++++---------------------- R/rdplot.R | 19 ++++++++----------- R/rdrobust.R | 30 +++++++++++++++--------------- man/rdrobust-package.Rd | 4 ++-- 6 files changed, 55 insertions(+), 59 deletions(-)
Title: Implementation of the Conic Multivariate Adaptive Regression
Splines in R
Description: An implementation of 'Conic Multivariate Adaptive Regression Splines (CMARS)' in R.
See Weber et al. (2011) CMARS: a new contribution to nonparametric regression with
multivariate adaptive regression splines supported by continuous optimization,
<DOI:10.1080/17415977.2011.624770>. It constructs models by using the terms
obtained from the forward step of MARS and then estimates parameters by using
'Tikhonov' regularization and conic quadratic optimization. It is possible to
construct models for prediction and binary classification. It provides performance
measures for the model developed. The package needs the optimisation software 'MOSEK'
<https://www.mosek.com/> to construct the models. Please follow the instructions in
'Rmosek' for the installation.
Author: Fatma Yerlikaya-Ozkurt [aut],
Ceyda Yazici [aut, cre],
Inci Batmaz [aut]
Maintainer: Ceyda Yazici <ceydayazici86@gmail.com>
Diff between cmaRs versions 0.1.1 dated 2021-11-06 and 0.1.2 dated 2022-09-30
DESCRIPTION | 12 MD5 | 46 + NAMESPACE | 3 R/class-data.R |only R/cmaRs.R | 91 +-- R/cmaRs.derivative_more_than_one.R | 45 - R/cmaRs.derivative_one.R | 42 - R/cmaRs.fit.R | 1065 ++++++++++++++++++------------------- R/cmaRs.identical_function.R | 37 - R/cmaRs.mosek_optimization.R | 94 +-- R/plot.cmaRs.R | 87 +-- R/pred-data.R |only R/predict.cmaRs.R | 58 -- R/summary.cmaRs.R | 199 +++--- R/tableb6-data.R |only build |only data |only inst |only man/classdata.std.Rd |only man/cmaRs.Rd | 23 man/plot.cmaRs.Rd | 17 man/preddata.std.Rd |only man/predict.cmaRs.Rd | 5 man/summary.cmaRs.Rd | 5 man/table.b6.Rd |only vignettes |only 26 files changed, 960 insertions(+), 869 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve; combined stacking and nudging; combined dodging and
nudging.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Michal Krassowski [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.4.4 dated 2022-04-10 and 0.4.5 dated 2022-09-30
DESCRIPTION | 18 MD5 | 122 +- NAMESPACE | 1 NEWS.md | 27 R/compute-npc.r | 2 R/dark-or-light.R |only R/geom-grob.R | 69 - R/geom-label-linked.r | 74 + R/geom-margin-arrow.r | 28 R/geom-margin-grob.r | 8 R/geom-margin-point.r | 18 R/geom-plot.R | 77 - R/geom-quadrant-lines.R | 43 R/geom-table.R | 93 +- R/geom-text-linked.r | 346 +++++--- R/geom-text-npc.r | 60 - R/position-nudge-center.R | 240 ++--- R/position-nudge-dodge.R | 79 + R/position-nudge-jitter.R | 115 +- R/position-nudge-line.R | 164 +-- R/position-nudge-stack.R | 55 - R/position-nudge-to.R | 38 R/scale-continuous-npc.r | 4 R/stat-dens1d-filter.r | 6 R/stat-fmt-tb.R | 11 R/stat-quadrant-counts.R | 27 README.md | 44 - build/vignette.rds |binary inst/doc/grammar-extensions.R | 628 ++++++++------ inst/doc/grammar-extensions.Rmd | 402 ++++++--- inst/doc/grammar-extensions.html | 1684 ++++++++++++++++++++++----------------- man/annotate.Rd | 192 ++-- man/compute_npcx.Rd | 68 - man/dark_or_light.Rd |only man/geom_grob.Rd | 357 ++++---- man/geom_plot.Rd | 441 ++++------ man/geom_point_s.Rd | 256 ++--- man/geom_quadrant_lines.Rd | 267 +++--- man/geom_table.Rd | 549 ++++++------ man/geom_text_npc.Rd | 340 ++++--- man/geom_text_s.Rd | 492 ++++++----- man/geom_x_margin_arrow.Rd | 210 ++-- man/geom_x_margin_grob.Rd | 200 ++-- man/geom_x_margin_point.Rd | 210 ++-- man/ggplot.Rd | 190 ++-- man/ggpp-package.Rd | 134 +-- man/position_dodgenudge.Rd | 280 +++--- man/position_jitternudge.Rd | 337 +++---- man/position_nudge_center.Rd | 527 +++++------- man/position_nudge_line.Rd | 441 ++++------ man/position_nudge_to.Rd | 120 +- man/position_stacknudge.Rd | 289 +++--- man/scale_continuous_npc.Rd | 50 - man/stat_dens1d_filter.Rd | 454 +++++----- man/stat_dens1d_labels.Rd | 396 ++++----- man/stat_dens2d_filter.Rd | 378 ++++---- man/stat_dens2d_labels.Rd | 340 +++---- man/stat_fmt_tb.Rd | 283 +++--- man/stat_quadrant_counts.Rd | 333 +++---- man/try_data_frame.Rd | 150 +-- man/ttheme_gtdefault.Rd | 398 ++++----- man/ttheme_set.Rd | 108 +- vignettes/grammar-extensions.Rmd | 402 ++++++--- 63 files changed, 7176 insertions(+), 6499 deletions(-)
Title: R Client for BitMEX
Description: A client for cryptocurrency exchange BitMEX
<https://www.bitmex.com/> including the ability to obtain historic
trade data and place, edit and cancel orders. BitMEX's Testnet and
live API are both supported.
Author: Harry Fisher [cre, aut, cph]
Maintainer: Harry Fisher <harryfisher21@gmail.com>
Diff between bitmexr versions 0.3.1 dated 2020-06-27 and 0.3.2 dated 2022-09-30
bitmexr-0.3.1/bitmexr/tests/testthat/testnet.bitmex.com |only bitmexr-0.3.1/bitmexr/tests/testthat/www.bitmex.com |only bitmexr-0.3.2/bitmexr/DESCRIPTION | 14 bitmexr-0.3.2/bitmexr/MD5 | 97 bitmexr-0.3.2/bitmexr/NEWS.md | 5 bitmexr-0.3.2/bitmexr/R/bucket_trades.R | 4 bitmexr-0.3.2/bitmexr/R/delete_orders.R | 10 bitmexr-0.3.2/bitmexr/R/edit_order.R | 6 bitmexr-0.3.2/bitmexr/R/execute_order.R | 6 bitmexr-0.3.2/bitmexr/R/general.R | 10 bitmexr-0.3.2/bitmexr/R/trades.R | 6 bitmexr-0.3.2/bitmexr/R/utils.R | 33 bitmexr-0.3.2/bitmexr/README.md | 27 bitmexr-0.3.2/bitmexr/build/vignette.rds |binary bitmexr-0.3.2/bitmexr/inst/doc/authentication.html | 51 bitmexr-0.3.2/bitmexr/inst/doc/getting-started.html | 27 bitmexr-0.3.2/bitmexr/inst/doc/placing-orders.html | 91 bitmexr-0.3.2/bitmexr/inst/doc/trade-data.R | 139 bitmexr-0.3.2/bitmexr/inst/doc/trade-data.Rmd | 3 bitmexr-0.3.2/bitmexr/inst/doc/trade-data.html | 183 bitmexr-0.3.2/bitmexr/man/available_symbols.Rd | 2 bitmexr-0.3.2/bitmexr/man/figures |only bitmexr-0.3.2/bitmexr/man/valid_dates.Rd | 4 bitmexr-0.3.2/bitmexr/tests/testthat/test-bucket-trades.R | 2 bitmexr-0.3.2/bitmexr/tests/testthat/test-edit_order.R | 2 bitmexr-0.3.2/bitmexr/tests/testthat/test-map-bucket-trades.R | 2 bitmexr-0.3.2/bitmexr/tests/testthat/test-map-trades.R | 3 bitmexr-0.3.2/bitmexr/tests/testthat/test-trades.R | 3 bitmexr-0.3.2/bitmexr/tests/testthat/test-utils.R | 10 bitmexr-0.3.2/bitmexr/vignettes/trade-data.Rmd | 3 bitmexr-0.3.2/bitmexr/vignettes/trade-data/0/www.bitmex.com/api/bitcoincharts.json | 220 bitmexr-0.3.2/bitmexr/vignettes/trade-data/0/www.bitmex.com/api/v1/trade-6b5a6b.json |16362 +++++----- bitmexr-0.3.2/bitmexr/vignettes/trade-data/0/www.bitmex.com/api/v1/trade/bucketed-d2609f.json | 285 33 files changed, 9079 insertions(+), 8531 deletions(-)
Title: Blinding Assessment Indexes for Randomized, Controlled, Clinical
Trials
Description: Generate the James Blinding Index, as described in James et al (1996)
<https://pubmed.ncbi.nlm.nih.gov/8841652/> and the Bang Blinding Index,
as described in Bang et al (2004) <https://pubmed.ncbi.nlm.nih.gov/15020033/>.
These are measures to assess whether or not satisfactory blinding has been
maintained in a randomized, controlled, clinical trial. These can be generated
for trial subjects, research coordinators and principal investigators, based
upon standardized questionnaires that have been administered, to assess whether
or not they can correctly guess to which treatment arm (e.g. placebo or treatment)
subjects were assigned at randomization.
Author: Marc Schwartz [aut, cre],
Nate Mercaldo [aut]
Maintainer: Marc Schwartz <marc_schwartz@me.com>
Diff between BI versions 1.0.0 dated 2021-05-04 and 1.1.0 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/BI.r | 2 +- README | 20 ++++++++++---------- man/BI.Rd | 6 ++++++ 5 files changed, 25 insertions(+), 19 deletions(-)
Title: 'parsnip' Engines for Survival Models
Description: Engines for survival models from the 'parsnip' package. These
include parametric models (e.g., Jackson (2016) <doi:10.18637/jss.v070.i08>),
semi-parametric (e.g., Simon et al (2011) <doi:10.18637/jss.v039.i05>), and
tree-based models (e.g., Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>).
Author: Emil Hvitfeldt [aut] ,
Hannah Frick [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Hannah Frick <hannah@rstudio.com>
Diff between censored versions 0.1.0 dated 2022-06-22 and 0.1.1 dated 2022-09-30
censored-0.1.0/censored/R/aaa_survival_prop.R |only censored-0.1.0/censored/R/bag_tree.R |only censored-0.1.0/censored/R/bag_tree_data.R |only censored-0.1.0/censored/R/boost_tree.R |only censored-0.1.0/censored/R/boost_tree_data.R |only censored-0.1.0/censored/R/decision_tree_data.R |only censored-0.1.0/censored/R/misc.R |only censored-0.1.0/censored/R/proportional_hazards_data.R |only censored-0.1.0/censored/R/rand_forest_data.R |only censored-0.1.0/censored/R/survival_reg.R |only censored-0.1.0/censored/R/survival_reg_data.R |only censored-0.1.0/censored/tests/testthat/_snaps/proportional_hazards-survival.md |only censored-0.1.0/censored/tests/testthat/test_survival_reg.R |only censored-0.1.0/censored/tests/testthat/test_survival_reg_flexsurv.R |only censored-0.1.0/censored/tests/testthat/test_survival_reg_survival.R |only censored-0.1.1/censored/DESCRIPTION | 11 censored-0.1.1/censored/MD5 | 78 - censored-0.1.1/censored/NAMESPACE | 1 censored-0.1.1/censored/NEWS.md |only censored-0.1.1/censored/R/aaa_survival_prob.R |only censored-0.1.1/censored/R/bag_tree-data.R |only censored-0.1.1/censored/R/bag_tree-rpart.R |only censored-0.1.1/censored/R/boost_tree-data.R |only censored-0.1.1/censored/R/boost_tree-mboost.R |only censored-0.1.1/censored/R/decision_tree-data.R |only censored-0.1.1/censored/R/proportional_hazards-data.R |only censored-0.1.1/censored/R/proportional_hazards-glmnet.R |only censored-0.1.1/censored/R/proportional_hazards-survival.R |only censored-0.1.1/censored/R/proportional_hazards.R | 171 -- censored-0.1.1/censored/R/rand_forest-data.R |only censored-0.1.1/censored/R/survival_reg-data.R |only censored-0.1.1/censored/R/survival_reg-survival.R |only censored-0.1.1/censored/R/zzz.R | 4 censored-0.1.1/censored/man/blackboost_train.Rd | 2 censored-0.1.1/censored/man/coxnet_train.Rd | 2 censored-0.1.1/censored/man/survival_prob_coxnet.Rd | 2 censored-0.1.1/censored/man/survival_prob_coxph.Rd | 2 censored-0.1.1/censored/man/survival_prob_mboost.Rd |only censored-0.1.1/censored/man/survival_prob_survbagg.Rd | 2 censored-0.1.1/censored/man/survival_prob_survreg.Rd | 2 censored-0.1.1/censored/man/survival_time_coxnet.Rd | 2 censored-0.1.1/censored/man/survival_time_coxph.Rd | 2 censored-0.1.1/censored/man/survival_time_mboost.Rd | 2 censored-0.1.1/censored/man/survival_time_survbagg.Rd | 2 censored-0.1.1/censored/tests/testthat/_snaps/proportional_hazards-glmnet.md | 19 censored-0.1.1/censored/tests/testthat/_snaps/proportional_hazards.md |only censored-0.1.1/censored/tests/testthat/_snaps/survival_reg.md |only censored-0.1.1/censored/tests/testthat/helper-censored.R |only censored-0.1.1/censored/tests/testthat/test-boost_tree-mboost.R | 349 ++--- censored-0.1.1/censored/tests/testthat/test-decision_tree-partykit.R | 4 censored-0.1.1/censored/tests/testthat/test-decision_tree-rpart.R | 6 censored-0.1.1/censored/tests/testthat/test-proportional_hazards-glmnet.R | 587 ++++------ censored-0.1.1/censored/tests/testthat/test-proportional_hazards-survival.R | 13 censored-0.1.1/censored/tests/testthat/test-proportional_hazards.R |only censored-0.1.1/censored/tests/testthat/test-rand_forest-partykit.R | 6 censored-0.1.1/censored/tests/testthat/test-survival_reg-flexsurv.R |only censored-0.1.1/censored/tests/testthat/test-survival_reg-survival.R |only censored-0.1.1/censored/tests/testthat/test-survival_reg.R |only 58 files changed, 465 insertions(+), 804 deletions(-)
Title: Turing Geovisualization Engine R package
Description: Turing Geovisualization Engine R package for geospatial visualization and analysis.
Author: Layik Hama [aut, cre] ,
Lydia France [aut],
Nick Barlow [aut],
Roly Perera [aut],
Roger Beecham [aut] ,
Nik Lomax [aut]
Maintainer: Layik Hama <l.hama@leeds.ac.uk>
Diff between tgver versions 0.2.0 dated 2022-03-08 and 0.3.0 dated 2022-09-30
tgver-0.2.0/tgver/man/accidents_sample.Rd |only tgver-0.3.0/tgver/DESCRIPTION | 8 tgver-0.3.0/tgver/MD5 | 59 +- tgver-0.3.0/tgver/NEWS.md | 4 tgver-0.3.0/tgver/R/data.R | 5 tgver-0.3.0/tgver/R/explore_sf.R | 31 - tgver-0.3.0/tgver/R/replace.R | 10 tgver-0.3.0/tgver/R/utils.R | 10 tgver-0.3.0/tgver/README.md | 13 tgver-0.3.0/tgver/build/vignette.rds |binary tgver-0.3.0/tgver/data/version.rda |binary tgver-0.3.0/tgver/inst/api.R | 11 tgver-0.3.0/tgver/inst/doc/dev-plan.html | 241 ++++++++ tgver-0.3.0/tgver/inst/doc/r-and-js.R | 17 tgver-0.3.0/tgver/inst/doc/r-and-js.Rmd | 21 tgver-0.3.0/tgver/inst/doc/r-and-js.html | 533 ++++++++++++++----- tgver-0.3.0/tgver/inst/doc/tgver.R | 3 tgver-0.3.0/tgver/inst/doc/tgver.Rmd | 8 tgver-0.3.0/tgver/inst/doc/tgver.html | 358 ++++++++++-- tgver-0.3.0/tgver/inst/tgve.R | 14 tgver-0.3.0/tgver/inst/tgve.zip |binary tgver-0.3.0/tgver/man/explore_sf.Rd | 14 tgver-0.3.0/tgver/man/file_replace.Rd | 6 tgver-0.3.0/tgver/man/get_url.Rd | 3 tgver-0.3.0/tgver/man/version.Rd | 20 tgver-0.3.0/tgver/tests/testthat/test-explore_sf.R | 7 tgver-0.3.0/tgver/tests/testthat/test-file_replace.R | 9 tgver-0.3.0/tgver/tests/testthat/test-utils.R | 58 +- tgver-0.3.0/tgver/vignettes/cdrc |only tgver-0.3.0/tgver/vignettes/r-and-js.Rmd | 21 tgver-0.3.0/tgver/vignettes/tgver.Rmd | 8 31 files changed, 1164 insertions(+), 328 deletions(-)
Title: Resource Resolver
Description: A resource represents some data or a computation unit. It is
described by a URL and credentials. This package proposes a Resource model
with "resolver" and "client" classes to facilitate the access and the usage of the
resources.
Author: Yannick Marcon [aut, cre] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between resourcer versions 1.2.1 dated 2022-08-19 and 1.3.0 dated 2022-09-30
DESCRIPTION | 10 ++++---- MD5 | 6 ++-- R/PrestoResourceConnector.R | 55 +++++++++++++++++++++++++------------------- inst/resources/resource.js | 46 ++++++++++++++++-------------------- 4 files changed, 61 insertions(+), 56 deletions(-)
Title: Index of Multiple Deprivation Data for the UK
Description: Index of Multiple Deprivation for UK nations at various
geographical levels. In England, deprivation data is for Lower Layer Super
Output Areas, Middle Layer Super Output Areas, Wards, and Local Authorities
based on data from <https://www.gov.uk/government/statistics/english-indices-of-deprivation-2019>.
In Wales, deprivation data is for Lower Layer Super Output Areas, Middle
Layer Super Output Areas, Wards, and Local Authorities based on data from
<https://gov.wales/welsh-index-multiple-deprivation-full-index-update-ranks-2019>.
In Scotland, deprivation data is for Data Zones, Intermediate Zones, and
Council Areas based on data from <https://simd.scot>. In Northern Ireland,
deprivation data is for Super Output Areas and Local Government Districts
based on data from <https://www.nisra.gov.uk/statistics/deprivation/northern-ireland-multiple-deprivation-measure-2017-nimdm2017>.
The 'IMD' package also provides the composite UK index developed by
<https://github. [...truncated...]
Author: Matthew Gwynfryn Thomas [cre, aut, cph],
Mike Page [aut]
Maintainer: Matthew Gwynfryn Thomas <matthewgthomas@gmail.com>
Diff between IMD versions 1.2.1 dated 2022-09-02 and 1.2.2 dated 2022-09-30
DESCRIPTION | 10 +++---- MD5 | 8 +++--- NEWS.md | 5 +++ README.md | 58 +++++++++++++++++++++++++++++--------------- data/cni_england_ward17.rda |binary 5 files changed, 53 insertions(+), 28 deletions(-)
Title: Extend the Behaviour of a Function without Explicitly Modifying
it
Description: A decorator is a function that receives a function, extends
its behaviour, and returned the altered function. Any caller that uses
the decorated function uses the same interface as it were the
original, undecorated function. Decorators serve two primary uses: (1)
Enhancing the response of a function as it sends data to a second
component; (2) Supporting multiple optional behaviours. An example of
the first use is a timer decorator that runs a function, outputs its
execution time on the console, and returns the original function's
result. An example of the second use is input type validation
decorator that during running time tests whether the caller has passed
input arguments of a particular class. Decorators can reduce
execution time, say by memoization, or reduce bugs by adding defensive
programming routines.
Author: Harel Lustiger [aut, cre] ,
Tidylab [cph, fnd]
Maintainer: Harel Lustiger <tidylab@gmail.com>
Diff between decorators versions 0.1.0 dated 2021-03-22 and 0.3.0 dated 2022-09-30
decorators-0.1.0/decorators/R/utils-NA.R |only decorators-0.1.0/decorators/man/NA_x_.Rd |only decorators-0.3.0/decorators/DESCRIPTION | 56 ++++----- decorators-0.3.0/decorators/MD5 | 18 +-- decorators-0.3.0/decorators/NAMESPACE | 3 decorators-0.3.0/decorators/NEWS.md | 12 +- decorators-0.3.0/decorators/R/decorator-validate_arguments.R | 7 - decorators-0.3.0/decorators/R/zzz.R | 26 ++-- decorators-0.3.0/decorators/README.md | 63 ++++++----- decorators-0.3.0/decorators/man/validate_arguments.Rd | 12 +- decorators-0.3.0/decorators/tests/testthat/helpers-xyz.R | 4 11 files changed, 109 insertions(+), 92 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like 'csv',
'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut] ,
Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
Shelby Bearrows [ctb],
https://github.com/mandreyel/ [cph] ,
Jukka Jylaenki [cph] ,
Mikkel Joergensen [cph] ,
RStudio [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between vroom versions 1.5.7 dated 2021-11-30 and 1.6.0 dated 2022-09-30
vroom-1.5.7/vroom/tests/testthat/logs |only vroom-1.5.7/vroom/tests/testthat/mtcars.zip |only vroom-1.6.0/vroom/DESCRIPTION | 74 +-- vroom-1.6.0/vroom/MD5 | 100 ++-- vroom-1.6.0/vroom/NEWS.md | 30 + vroom-1.6.0/vroom/R/col_types.R | 10 vroom-1.6.0/vroom/R/cpp11.R | 24 - vroom-1.6.0/vroom/R/path.R | 26 - vroom-1.6.0/vroom/R/problems.R | 17 vroom-1.6.0/vroom/R/vroom-package.R | 5 vroom-1.6.0/vroom/R/vroom.R | 157 ++++++- vroom-1.6.0/vroom/R/vroom_fwf.R | 2 vroom-1.6.0/vroom/R/vroom_lines.R | 2 vroom-1.6.0/vroom/R/vroom_write.R | 40 + vroom-1.6.0/vroom/README.md | 37 - vroom-1.6.0/vroom/build/vignette.rds |binary vroom-1.6.0/vroom/build/vroom.pdf |binary vroom-1.6.0/vroom/inst/WORDLIST | 85 ++-- vroom-1.6.0/vroom/inst/doc/benchmarks.Rmd | 16 vroom-1.6.0/vroom/inst/doc/benchmarks.html | 337 ++++++++++++++-- vroom-1.6.0/vroom/inst/doc/vroom.R | 8 vroom-1.6.0/vroom/inst/doc/vroom.Rmd | 8 vroom-1.6.0/vroom/inst/doc/vroom.html | 420 +++++++++++++++++--- vroom-1.6.0/vroom/man/cols.Rd | 9 vroom-1.6.0/vroom/man/gen_tbl.Rd | 10 vroom-1.6.0/vroom/man/problems.Rd | 5 vroom-1.6.0/vroom/man/vroom-package.Rd | 7 vroom-1.6.0/vroom/man/vroom.Rd | 59 ++ vroom-1.6.0/vroom/man/vroom_format.Rd | 6 vroom-1.6.0/vroom/man/vroom_fwf.Rd | 47 +- vroom-1.6.0/vroom/man/vroom_lines.Rd | 15 vroom-1.6.0/vroom/man/vroom_progress.Rd | 16 vroom-1.6.0/vroom/man/vroom_write.Rd | 6 vroom-1.6.0/vroom/man/vroom_write_lines.Rd | 2 vroom-1.6.0/vroom/src/cpp11.cpp | 42 +- vroom-1.6.0/vroom/src/delimited_index.cc | 2 vroom-1.6.0/vroom/src/index_collection.cc | 12 vroom-1.6.0/vroom/src/unicode_fopen.h | 31 + vroom-1.6.0/vroom/src/vroom_errors.h | 25 - vroom-1.6.0/vroom/src/vroom_fct.cc | 14 vroom-1.6.0/vroom/src/vroom_write.cc | 15 vroom-1.6.0/vroom/tests/testthat/_snaps |only vroom-1.6.0/vroom/tests/testthat/test-datetime.R | 2 vroom-1.6.0/vroom/tests/testthat/test-factor.R | 25 + vroom-1.6.0/vroom/tests/testthat/test-multi-file.R | 53 ++ vroom-1.6.0/vroom/tests/testthat/test-path.R | 91 ++++ vroom-1.6.0/vroom/tests/testthat/test-problems.R | 88 +++- vroom-1.6.0/vroom/tests/testthat/test-select.R | 29 + vroom-1.6.0/vroom/tests/testthat/test-vroom_write.R | 79 +++ vroom-1.6.0/vroom/vignettes/benchmarks.Rmd | 16 vroom-1.6.0/vroom/vignettes/vroom.Rmd | 8 51 files changed, 1596 insertions(+), 516 deletions(-)
Title: Spatial Constrained Clusterwise Regression
Description: A collection of functions for estimating spatial regimes, aggregations of neighboring spatial units that are homogeneous in functional terms. The term spatial regime, therefore, should not be understood as a synonym for cluster. More precisely, the term cluster does not presuppose any functional relationship between the variables considered, while the term regime is linked to a regressive relationship underlying the spatial process.
Author: Francesco Vidoli, Roberto Benedetti
Maintainer: Francesco Vidoli <fvidoli@gmail.com>
Diff between SpatialRegimes versions 1.0 dated 2022-04-02 and 1.1 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 9 +++++++++ R/sswf.R | 2 +- build/vignette.rds |binary inst/doc/SpatialRegimes_vignette.pdf |binary 6 files changed, 19 insertions(+), 10 deletions(-)
More information about SpatialRegimes at CRAN
Permanent link
Title: Operations to Ease Data Analyses Specific to Nigeria
Description: A set of convenience functions as well as geographical/political
data about Nigeria, aimed at simplifying work with data and information that
are specific to the country.
Author: Victor Ordu [aut, cre]
Maintainer: Victor Ordu <victorordu@outlook.com>
Diff between naijR versions 0.4.4 dated 2022-08-30 and 0.5.0 dated 2022-09-30
DESCRIPTION | 12 MD5 | 44 +- NAMESPACE | 9 NEWS.md | 19 + R/class-regions.R | 232 ++++++++++-- R/isregion.R | 20 + R/map_nigeria.R | 556 +++++++++++++++++++++++-------- R/methods-fix_region.R | 6 R/mobile.R | 111 +++++- inst/doc/interactive.html | 13 inst/doc/nigeria-maps.R | 4 inst/doc/nigeria-maps.Rmd | 6 inst/doc/nigeria-maps.html | 51 +- man/fix_mobile.Rd | 5 man/fix_region.Rd | 4 man/lgas.Rd | 4 man/map_ng.Rd | 26 + man/states.Rd | 34 + tests/testthat/test-class-regions.R | 75 ++++ tests/testthat/test-map_nigeria.R | 215 +++-------- tests/testthat/test-methods-fix_region.R | 61 ++- tests/testthat/test-mobile.R | 155 +++++--- vignettes/nigeria-maps.Rmd | 6 23 files changed, 1160 insertions(+), 508 deletions(-)
Title: Item Pool Visualization
Description: Generate plots based on the Item Pool Visualization concept for
latent constructs. Item Pool Visualizations are used to display the
conceptual structure of a set of items (self-report or psychometric).
Dantlgraber, Stieger, & Reips (2019) <doi:10.1177/2059799119884283>.
Author: Nils Petras [aut, cre],
Michael Dantlgraber [aut],
Ulf-Dietrich Reips [ctb],
Matthias Bannert [ctb]
Maintainer: Nils Petras <nils.petras@mailbox.org>
Diff between IPV versions 0.2.0 dated 2021-12-14 and 1.0.0 dated 2022-09-30
IPV-0.2.0/IPV/R/rename.R |only IPV-0.2.0/IPV/data/DSSEI.rda |only IPV-0.2.0/IPV/data/SMTQ.rda |only IPV-0.2.0/IPV/man/DSSEI.Rd |only IPV-0.2.0/IPV/man/SMTQ.Rd |only IPV-0.2.0/IPV/man/rename.Rd |only IPV-0.2.0/IPV/man/rename_est.Rd |only IPV-0.2.0/IPV/man/rename_raw.Rd |only IPV-0.2.0/IPV/man/rename_raw_simple.Rd |only IPV-0.2.0/IPV/man/rename_simple.Rd |only IPV-0.2.0/IPV/man/rename_xarrow.Rd |only IPV-1.0.0/IPV/DESCRIPTION | 8 IPV-1.0.0/IPV/MD5 | 92 - IPV-1.0.0/IPV/NAMESPACE | 4 IPV-1.0.0/IPV/NEWS.md | 21 IPV-1.0.0/IPV/R/IPV.R | 8 IPV-1.0.0/IPV/R/data.R | 170 +-- IPV-1.0.0/IPV/R/facet_chart.R | 35 IPV-1.0.0/IPV/R/input_excel.R | 132 +- IPV-1.0.0/IPV/R/input_manual_process.R | 14 IPV-1.0.0/IPV/R/ipv_est.R | 107 + IPV-1.0.0/IPV/R/ipv_expand.R |only IPV-1.0.0/IPV/R/is.IPV.R |only IPV-1.0.0/IPV/R/item_chart.R | 15 IPV-1.0.0/IPV/R/item_overview.R | 120 +- IPV-1.0.0/IPV/R/nested_chart.R | 202 +-- IPV-1.0.0/IPV/R/new_IPV.R |only IPV-1.0.0/IPV/R/relabel.R |only IPV-1.0.0/IPV/R/validate_IPV.R |only IPV-1.0.0/IPV/build/vignette.rds |binary IPV-1.0.0/IPV/data/HEXACO.rda |binary IPV-1.0.0/IPV/data/self_confidence.rda |binary IPV-1.0.0/IPV/inst/doc/ipv-vignette.R | 110 + IPV-1.0.0/IPV/inst/doc/ipv-vignette.Rmd | 173 ++- IPV-1.0.0/IPV/inst/doc/ipv-vignette.html | 1735 +++++++++++++++++++------------ IPV-1.0.0/IPV/man/HEXACO.Rd | 13 IPV-1.0.0/IPV/man/IPV.Rd | 8 IPV-1.0.0/IPV/man/coord_nested.Rd | 8 IPV-1.0.0/IPV/man/facet_chart.Rd | 16 IPV-1.0.0/IPV/man/floads.Rd | 40 IPV-1.0.0/IPV/man/input_excel.Rd | 149 +- IPV-1.0.0/IPV/man/input_excel_factor.Rd | 8 IPV-1.0.0/IPV/man/ipv_est.Rd | 57 - IPV-1.0.0/IPV/man/ipv_expand.Rd |only IPV-1.0.0/IPV/man/ipv_long_to_wide.Rd |only IPV-1.0.0/IPV/man/is.IPV.Rd |only IPV-1.0.0/IPV/man/item_chart.Rd | 8 IPV-1.0.0/IPV/man/item_overview.Rd | 37 IPV-1.0.0/IPV/man/nested_chart.Rd | 59 - IPV-1.0.0/IPV/man/new_IPV.Rd |only IPV-1.0.0/IPV/man/plot_facets.Rd | 7 IPV-1.0.0/IPV/man/plot_nested.Rd | 12 IPV-1.0.0/IPV/man/relabel.Rd |only IPV-1.0.0/IPV/man/relabel_est.Rd |only IPV-1.0.0/IPV/man/relabel_raw.Rd |only IPV-1.0.0/IPV/man/relabel_raw_simple.Rd |only IPV-1.0.0/IPV/man/relabel_simple.Rd |only IPV-1.0.0/IPV/man/relabel_xarrow.Rd |only IPV-1.0.0/IPV/man/self_confidence.Rd | 98 + IPV-1.0.0/IPV/vignettes/ipv-vignette.Rmd | 173 ++- 60 files changed, 2288 insertions(+), 1351 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Michael Curry [aut] ,
Joseph Larmarange [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb] ,
Stephanie Lobaugh [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.6.1 dated 2022-06-22 and 1.6.2 dated 2022-09-30
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gtsummary-1.6.2/gtsummary/R/custom_tidiers.R | 36 gtsummary-1.6.2/gtsummary/R/deprecated.R | 33 gtsummary-1.6.2/gtsummary/R/gtsummary-package.R | 10 gtsummary-1.6.2/gtsummary/R/inline_text.R | 191 gtsummary-1.6.2/gtsummary/R/modify.R | 33 gtsummary-1.6.2/gtsummary/R/modify_column_alignment.R | 2 gtsummary-1.6.2/gtsummary/R/modify_column_hide.R | 6 gtsummary-1.6.2/gtsummary/R/modify_column_merge.R | 10 gtsummary-1.6.2/gtsummary/R/modify_fmt_fun.R | 6 gtsummary-1.6.2/gtsummary/R/modify_table_body.R | 6 gtsummary-1.6.2/gtsummary/R/modify_table_header.R | 106 gtsummary-1.6.2/gtsummary/R/plot.R | 2 gtsummary-1.6.2/gtsummary/R/remove_row_type.R | 33 gtsummary-1.6.2/gtsummary/R/select_helpers.R | 4 gtsummary-1.6.2/gtsummary/R/separate_p_footnotes.R | 11 gtsummary-1.6.2/gtsummary/R/set_gtsummary_theme.R | 6 gtsummary-1.6.2/gtsummary/R/sort_filter_p.R | 12 gtsummary-1.6.2/gtsummary/R/style_number.R | 2 gtsummary-1.6.2/gtsummary/R/style_pvalue.R | 6 gtsummary-1.6.2/gtsummary/R/style_ratio.R | 4 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gtsummary-1.6.2/gtsummary/R/utils-tbl_custom_summary.R | 16 gtsummary-1.6.2/gtsummary/R/utils-tbl_summary.R | 34 gtsummary-1.6.2/gtsummary/README.md | 25 gtsummary-1.6.2/gtsummary/build/gtsummary.pdf |binary gtsummary-1.6.2/gtsummary/build/vignette.rds |binary gtsummary-1.6.2/gtsummary/inst/WORDLIST | 1 gtsummary-1.6.2/gtsummary/inst/doc/gallery.html | 2287 ++++------ gtsummary-1.6.2/gtsummary/inst/doc/gtsummary_definition.html | 1039 ++-- gtsummary-1.6.2/gtsummary/inst/doc/inline_text.html | 424 - gtsummary-1.6.2/gtsummary/inst/doc/rmarkdown.R | 89 gtsummary-1.6.2/gtsummary/inst/doc/rmarkdown.Rmd | 91 gtsummary-1.6.2/gtsummary/inst/doc/rmarkdown.html | 737 --- gtsummary-1.6.2/gtsummary/inst/doc/tbl_regression.html | 1346 ++--- gtsummary-1.6.2/gtsummary/inst/doc/tbl_summary.html | 2225 ++++----- gtsummary-1.6.2/gtsummary/inst/doc/themes.html | 835 +-- gtsummary-1.6.2/gtsummary/man/add_ci.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_difference.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_glance.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_global_p.Rd | 10 gtsummary-1.6.2/gtsummary/man/add_n.tbl_summary.Rd | 4 gtsummary-1.6.2/gtsummary/man/add_n.tbl_survfit.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_n_regression.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_nevent.tbl_survfit.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_nevent_regression.Rd | 8 gtsummary-1.6.2/gtsummary/man/add_overall.Rd | 12 gtsummary-1.6.2/gtsummary/man/add_p.tbl_cross.Rd | 10 gtsummary-1.6.2/gtsummary/man/add_p.tbl_summary.Rd | 10 gtsummary-1.6.2/gtsummary/man/add_p.tbl_survfit.Rd | 12 gtsummary-1.6.2/gtsummary/man/add_p.tbl_svysummary.Rd | 14 gtsummary-1.6.2/gtsummary/man/add_q.Rd | 10 gtsummary-1.6.2/gtsummary/man/add_significance_stars.Rd | 47 gtsummary-1.6.2/gtsummary/man/add_stat.Rd | 14 gtsummary-1.6.2/gtsummary/man/add_stat_label.Rd | 14 gtsummary-1.6.2/gtsummary/man/add_vif.Rd | 10 gtsummary-1.6.2/gtsummary/man/as_flex_table.Rd | 8 gtsummary-1.6.2/gtsummary/man/as_gt.Rd | 9 gtsummary-1.6.2/gtsummary/man/as_hux_table.Rd | 4 gtsummary-1.6.2/gtsummary/man/as_kable.Rd | 2 gtsummary-1.6.2/gtsummary/man/as_kable_extra.Rd | 12 gtsummary-1.6.2/gtsummary/man/as_tibble.gtsummary.Rd | 2 gtsummary-1.6.2/gtsummary/man/bold_italicize_labels_levels.Rd | 10 gtsummary-1.6.2/gtsummary/man/bold_p.Rd | 8 gtsummary-1.6.2/gtsummary/man/combine_terms.Rd | 6 gtsummary-1.6.2/gtsummary/man/continuous_summary.Rd | 6 gtsummary-1.6.2/gtsummary/man/custom_tidiers.Rd | 14 gtsummary-1.6.2/gtsummary/man/figures/gt_output_formats.PNG |binary gtsummary-1.6.2/gtsummary/man/inline_text.tbl_regression.Rd | 2 gtsummary-1.6.2/gtsummary/man/inline_text.tbl_survfit.Rd | 4 gtsummary-1.6.2/gtsummary/man/inline_text.tbl_survival.Rd | 71 gtsummary-1.6.2/gtsummary/man/modify.Rd | 12 gtsummary-1.6.2/gtsummary/man/modify_column_alignment.Rd | 2 gtsummary-1.6.2/gtsummary/man/modify_column_hide.Rd | 6 gtsummary-1.6.2/gtsummary/man/modify_column_merge.Rd | 10 gtsummary-1.6.2/gtsummary/man/modify_fmt_fun.Rd | 6 gtsummary-1.6.2/gtsummary/man/modify_table_body.Rd | 6 gtsummary-1.6.2/gtsummary/man/plot.Rd | 2 gtsummary-1.6.2/gtsummary/man/proportion_summary.Rd | 4 gtsummary-1.6.2/gtsummary/man/ratio_summary.Rd | 4 gtsummary-1.6.2/gtsummary/man/remove_row_type.Rd | 12 gtsummary-1.6.2/gtsummary/man/select_helpers.Rd | 4 gtsummary-1.6.2/gtsummary/man/separate_p_footnotes.Rd | 9 gtsummary-1.6.2/gtsummary/man/set_gtsummary_theme.Rd | 6 gtsummary-1.6.2/gtsummary/man/sort_filter_p.Rd | 8 gtsummary-1.6.2/gtsummary/man/style_number.Rd | 2 gtsummary-1.6.2/gtsummary/man/style_sigfig.Rd | 16 gtsummary-1.6.2/gtsummary/man/tbl_continuous.Rd | 10 gtsummary-1.6.2/gtsummary/man/tbl_cross.Rd | 8 gtsummary-1.6.2/gtsummary/man/tbl_custom_summary.Rd | 12 gtsummary-1.6.2/gtsummary/man/tbl_merge.Rd | 8 gtsummary-1.6.2/gtsummary/man/tbl_regression.Rd | 12 gtsummary-1.6.2/gtsummary/man/tbl_stack.Rd | 8 gtsummary-1.6.2/gtsummary/man/tbl_strata.Rd | 8 gtsummary-1.6.2/gtsummary/man/tbl_summary.Rd | 16 gtsummary-1.6.2/gtsummary/man/tbl_survfit.Rd | 18 gtsummary-1.6.2/gtsummary/man/tbl_survival.Rd | 59 gtsummary-1.6.2/gtsummary/man/tbl_svysummary.Rd | 11 gtsummary-1.6.2/gtsummary/man/tbl_uvregression.Rd | 8 gtsummary-1.6.2/gtsummary/man/theme_gtsummary.Rd | 14 gtsummary-1.6.2/gtsummary/tests/testthat/_snaps |only gtsummary-1.6.2/gtsummary/tests/testthat/test-add_p.tbl_summary.R | 2 gtsummary-1.6.2/gtsummary/tests/testthat/test-as_kable_extra.R | 24 gtsummary-1.6.2/gtsummary/tests/testthat/test-as_tibble.R | 14 gtsummary-1.6.2/gtsummary/tests/testthat/test-inline_text.R | 127 gtsummary-1.6.2/gtsummary/tests/testthat/test-modify_header.R | 9 gtsummary-1.6.2/gtsummary/tests/testthat/test-remove_row_type.R | 41 gtsummary-1.6.2/gtsummary/tests/testthat/test-select_helpers.R | 2 gtsummary-1.6.2/gtsummary/tests/testthat/test-style_ratio.R | 5 gtsummary-1.6.2/gtsummary/tests/testthat/test-style_sigfig.R | 9 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_cross.R | 4 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_custom_summary.R | 20 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_summary.R | 4 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_survfit.R | 2 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_survival.R | 58 gtsummary-1.6.2/gtsummary/tests/testthat/test-tbl_svysummary.R | 6 gtsummary-1.6.2/gtsummary/vignettes/rmarkdown.Rmd | 91 262 files changed, 5829 insertions(+), 6874 deletions(-)
Title: Set of Tools to Data Analysis using Generalized Linear Models
Description: Set of tools to the statistical analysis of data using: (1) normal linear models; (2) generalized linear models; (3) negative binomial regression models as alternative to the Poisson regression models under the presence of overdispersion; (4) beta-binomial and random-cumpled binomial regression models as alternative to the binomial regression models under the presence of overdispersion; (5) Zero-inflated and zero-altered regression models to deal with zero-excess in count data;(6) generalized estimating equations for cluster correlated data.
Author: Luis Hernando Vanegas [aut, cre],
Luz Marina Rondon [aut],
Gilberto A. Paula [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between glmtoolbox versions 0.1.3 dated 2022-04-07 and 0.1.4 dated 2022-09-30
DESCRIPTION | 12 - MD5 | 158 +++++++------ NAMESPACE | 10 R/data.R | 174 ++++++++++++++- R/geeglm.R | 233 +++++++++++--------- R/glms.R | 414 ++++++++++++++++++++++++++++-------- R/overglm3.R | 336 ++++++++++++++++++++--------- data/Steel.rda |only data/advertising.rda |only data/coupons.rda |only data/dilution.rda |only data/fabric.rda |only data/pipeline.rda |only man/AGPC.Rd | 8 man/CIC.Rd | 8 man/FisherScoring.Rd |only man/GHYC.Rd | 8 man/GUIDE.Rd | 1 man/QIC.Rd | 8 man/RJC.Rd | 8 man/ROCc.Rd | 20 - man/SGPC.Rd | 8 man/Steel.Rd |only man/Trajan.Rd | 1 man/adjR2.Rd |only man/adjR2.glm.Rd |only man/adjR2.lm.Rd |only man/advertising.Rd |only man/anova.glmgee.Rd | 19 - man/anova.overglm.Rd | 2 man/anova2.Rd | 1 man/aucuba.Rd | 1 man/bladder.Rd | 1 man/brains.Rd | 3 man/cellular.Rd | 1 man/cholecystectomy.Rd | 1 man/cooks.distance.glmgee.Rd | 6 man/cooks.distance.overglm.Rd | 2 man/cooks.distance.zeroinflation.Rd | 1 man/coupons.Rd |only man/depression.Rd | 1 man/dfbeta.glmgee.Rd | 22 + man/dfbeta.overglm.Rd | 2 man/dfbeta.zeroinflation.Rd | 1 man/dilution.Rd |only man/envelope.glm.Rd | 3 man/envelope.lm.Rd | 1 man/envelope.overglm.Rd | 4 man/envelope.zeroinflation.Rd | 3 man/estequa.glm.Rd | 1 man/estequa.glmgee.Rd | 11 man/estequa.overglm.Rd | 6 man/estequa.zeroinflation.Rd | 2 man/fabric.Rd |only man/glmgee.Rd | 18 + man/gvif.glm.Rd | 1 man/gvif.overglm.Rd | 2 man/hltest.Rd | 2 man/leverage.glmgee.Rd | 1 man/liver.Rd | 1 man/localInfluence.glmgee.Rd | 8 man/localInfluence.overglm.Rd | 2 man/mammary.Rd | 1 man/orobanche.Rd | 1 man/ossification.Rd | 1 man/overglm.Rd | 6 man/overtest.Rd |only man/pipeline.Rd |only man/predict.glmgee.Rd | 8 man/races.Rd | 1 man/residuals.glmgee.Rd | 8 man/residuals.overglm.Rd | 2 man/residuals.zeroinflation.Rd | 1 man/residuals2.Rd | 6 man/richness.Rd | 1 man/rinse.Rd | 1 man/skincancer.Rd | 1 man/spruces.Rd | 1 man/stepCriterion.glm.Rd | 1 man/stepCriterion.glmgee.Rd | 8 man/stepCriterion.overglm.Rd | 2 man/swimmers.Rd | 1 man/uti.Rd | 1 man/vcov.glmgee.Rd | 6 man/vdtest.glm.Rd | 2 man/vdtest.lm.Rd | 1 man/zero.excess.Rd |only man/zeroalt.Rd | 2 man/zeroinf.Rd | 2 89 files changed, 1150 insertions(+), 452 deletions(-)
Title: Business Process Analysis in R
Description: Comprehensive Business Process Analysis toolkit. Creates S3-class for event log objects, and related handler functions. Imports related packages for filtering event data, computation of descriptive statistics, handling of 'Petri Net' objects and visualization of process maps. See also packages 'edeaR','processmapR', 'eventdataR' and 'processmonitR'.
Author: Gert Janssenswillen [aut, cre],
Gerard van Hulzen [ctb],
Felix Mannhardt [ctb],
Niels Martin [ctb],
Greg Van Houdt [ctb]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between bupaR versions 0.5.1 dated 2022-09-29 and 0.5.2 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 2 ++ R/activitylog.R | 14 +++++++++++++- R/assign_instance_id.R | 14 +++++++------- R/convert_timestamps.R | 6 +++--- 6 files changed, 34 insertions(+), 20 deletions(-)
Title: Leave One Out Kernel Density Estimates for Outlier Detection
Description: Outlier detection using leave-one-out kernel density estimates and
extreme value theory. The bandwidth for kernel density estimates is computed
using persistent homology, a technique in topological data analysis. Using
peak-over-threshold method, a generalized Pareto distribution is fitted to
the log of leave-one-out kde values to identify outliers.
Author: Sevvandi Kandanaarachchi [aut, cre]
,
Rob Hyndman [aut] ,
Chris Fraley [ctb]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between lookout versions 0.1.2 dated 2022-08-26 and 0.1.3 dated 2022-09-30
DESCRIPTION | 12 ++++---- MD5 | 10 +++--- R/autoplot_lookout.R | 2 - R/lookoutliers.R | 72 +++++++++++++++++++++++++++++++++++++++++++------ man/lookout-package.Rd | 5 +++ man/lookout.Rd | 5 ++- 6 files changed, 86 insertions(+), 20 deletions(-)
Title: Read Hierarchical Fixed Width Files
Description: Read hierarchical fixed width files like those commonly used by
many census data providers. Also allows for reading of data in chunks,
and reading 'gzipped' files without storing the full file in memory.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Joe Grover [ctb],
Mark Padgham [ctb],
Hadley Wickham [ctb] ,
Jim Hester [ctb] ,
Romain Francois [ctb] ,
R Core Team [ctb] ,
RStudio [cph, fnd] ,
Jukka Jylaenki [ctb, cph] ,
Mikkel Joergensen [ctb, cph] [...truncated...]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between hipread versions 0.2.2 dated 2020-04-29 and 0.2.3 dated 2022-09-30
DESCRIPTION | 9 -- MD5 | 14 +-- NEWS.md | 3 README.md | 80 +++++++++--------- man/callback.Rd | 204 +++++++++++++++++++++++----------------------- man/hipread-package.Rd | 4 man/hipread_long_yield.Rd | 80 +++++++++--------- src/RcppExports.cpp | 5 + 8 files changed, 202 insertions(+), 197 deletions(-)
Title: R Utilities for GFF Files
Description: R utilities for gff files, either general feature format (GFF3) or gene transfer format (GTF) formatted files. This package includes functions for producing summary stats, check for consistency and sorting errors, conversion from GTF to GFF3 format, file sorting, visualization and plotting of feature hierarchy, and exporting user defined feature subsets to SAF format. This tool was developed by the BioinfoGP core facility at CNB-CSIC.
Author: Juan Antonio Garcia-Martin [cre, aut]
,
Juan Carlos Oliveros [aut, ctb]
,
Rafael Torres-Perez [aut, ctb]
Maintainer: Juan Antonio Garcia-Martin <ja.garcia@cnb.csic.es>
Diff between Rgff versions 0.1.5 dated 2022-09-23 and 0.1.6 dated 2022-09-30
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS.md | 4 ++++ R/Rgff.R | 24 +++++++++--------------- inst/doc/Using_Rgff.html | 10 +++++----- 5 files changed, 28 insertions(+), 30 deletions(-)
Title: Multivariate Model Based Inference for Domains
Description: Allows users to produce estimates and MSE for multivariate variables using Linear Mixed Model. The package follows the approach of Datta, Day and Basawa (1999) <doi:10.1016/S0378-3758(98)00147-5>.
Author: Michele D'Alo' [aut],
Stefano Falorsi [aut],
Andrea Fasulo [aut, cre]
Maintainer: Andrea Fasulo <fasulo@istat.it>
Diff between mind versions 0.1.6-1 dated 2022-04-12 and 1.0.0 dated 2022-09-30
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NAMESPACE | 1 + R/mind.unit.R | 38 +++++++++++++++++++++++++------------- R/predict.mind.R | 2 +- man/mind.unit.Rd | 3 ++- man/predict.mind.Rd | 9 ++++++--- 7 files changed, 46 insertions(+), 29 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Description: The 'timeDate' class fulfils the conventions of the ISO 8601
standard as well as of the ANSI C and POSIX standards. Beyond
these standards it provides the "Financial Center" concept
which allows to handle data records collected in different time
zones and mix them up to have always the proper time stamps with
respect to your personal financial center, or alternatively to the GMT
reference time. It can thus also handle time stamps from historical
data records from the same time zone, even if the financial
centers changed day light saving times at different calendar
dates.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Joe W. Byers [ctb],
Georgi N. Boshnakov [cre, ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeDate versions 4021.104 dated 2022-07-19 and 4021.106 dated 2022-09-30
DESCRIPTION | 10 +- MD5 | 77 ++++++++-------- NEWS.md | 69 ++++++++++++++ R/calendar-nDay.R | 22 ++++ R/holiday-Listing.R | 9 - R/holiday-NYSE.R | 151 ++++++++++++++++++-------------- R/holiday-TSX.R | 12 ++ R/holiday.R | 13 +- R/stats-kurtosis.R | 13 +- R/stats-skewness.R | 8 + R/sysdata.rda |only R/timeDate-whichFormat.R | 27 ++++- inst/_pkgdown.yml | 19 ++-- inst/unitTests/runit.HolidayCalendars.R | 4 inst/unitTests/runit.HolidayDates.R | 12 ++ inst/unitTests/runit.SpecialDates.R | 12 ++ man/base-rep.Rd | 48 ++-------- man/base-rev.Rd | 24 ----- man/base-unique.Rd | 14 -- man/calendar-align.Rd | 10 +- man/calendar-firstDay.Rd | 2 man/calendar-julian.Rd | 68 ++++++++++---- man/calendar-nDay.Rd | 6 - man/calendar-onOrAfter.Rd | 2 man/class-timeDate.Rd | 137 +++++++++++++++++++++++------ man/holiday-NYSE.Rd | 73 ++++++++++++--- man/holiday.Rd | 50 ++++++---- man/methods-as.Rd | 11 +- man/options-myFinCenter.Rd | 8 - man/options-myUnits.Rd | 2 man/stats-kurtosis.Rd | 47 +++++++-- man/stats-skewness.Rd | 14 +- man/stats-window.Rd | 17 ++- man/timeDate-Calendar.Rd | 4 man/timeDate-Sequence.Rd | 25 ++++- man/timeDate-Sys.timeDate.Rd | 2 man/timeDate-finCenter.Rd | 26 ++++- man/timeDate-listFinCenter.Rd | 29 ++---- man/timeDate-rulesFinCenter.Rd | 26 ++--- man/timeDate.Rd | 75 +++++++++++++++ 40 files changed, 798 insertions(+), 380 deletions(-)
Title: JavaScript Charts Tool
Description: Provides an R interface for using 'AmCharts' Library. Based on
'htmlwidgets', it provides a global architecture to generate 'JavaScript' source
code for charts. Most of classes in the library have their equivalent in R
with S4 classes; for those classes, not all properties have been referenced but
can easily be added in the constructors. Complex properties (e.g. 'JavaScript'
object) can be passed as named list. See examples at
<https://datastorm-open.github.io/introduction_ramcharts/>
and <https://www.amcharts.com/> for
more information about the library. The package includes the free version
of 'AmCharts' Library. Its only limitation is a small link to the web site
displayed on your charts. If you enjoy this library, do not hesitate to refer
to this page <https://www.amcharts.com/online-store/> to purchase a licence,
and thus support its creators and get a period of Priority Support. See also
<https://www.amcharts.com/about/> for more information about 'AmChart [...truncated...]
Author: Benoit Thieurmel [aut, cre],
Antanas Marcelionis [aut, cph]
Maintainer: Benoit Thieurmel <bthieurmel@gmail.com>
Diff between rAmCharts versions 2.1.13 dated 2019-12-06 and 2.1.15 dated 2022-09-30
DESCRIPTION | 32 MD5 | 566 NAMESPACE | 2 R/amChartsAPI.R | 4 R/base_data.R | 4 R/base_startupMessage.R | 2 R/chart_amBarplot.R | 5 R/chart_amBoxplot.R | 100 R/chart_amBullet.R | 2 R/chart_amCandlestick.R | 2 R/chart_amFloatingBar.R | 5 R/chart_amFunnel.R | 2 R/chart_amGauge.R | 5 R/chart_amHist.R | 2 R/chart_amMekko.R | 2 R/chart_amOHLC.R | 2 R/chart_amPie.R | 4 R/chart_amPlot.R | 4 R/chart_amRadar.R | 7 R/chart_amTimeSeries.R | 48 R/chart_amWaterfall.R | 2 R/chart_amWind.R | 4 R/class_AmBalloon.R | 4 R/class_AmChart.R | 13 R/class_AmChart_constructors.R | 16 R/class_AmChart_setters.R | 64 R/class_AmLegend.R | 6 R/class_AmObject.R | 20 R/class_AmStockChart.R | 11 R/class_AmStockChart_setters.R | 34 R/class_CategoryAxis.R | 2 R/class_StockPanel.R | 2 R/shiny_modules_timeSeries.R | 189 R/union_AmCharts.R | 6 R/utils.R | 8 R/utils_amOptions.R | 2 inst/api/javascriptcharts/AmAngularGauge.html | 114 inst/api/javascriptcharts/AmBalloon.html | 56 inst/api/javascriptcharts/AmChart.html | 108 inst/api/javascriptcharts/AmCharts.html | 28 inst/api/javascriptcharts/AmCoordinateChart.html | 34 inst/api/javascriptcharts/AmFunnelChart.html | 68 inst/api/javascriptcharts/AmGanttChart.html | 34 inst/api/javascriptcharts/AmGraph.html | 28 inst/api/javascriptcharts/AmLegend.html | 14 inst/api/javascriptcharts/AmPieChart.html | 72 inst/api/javascriptcharts/AmRadarChart.html | 120 inst/api/javascriptcharts/AmRectangularChart.html | 34 inst/api/javascriptcharts/AmSerialChart.html | 74 inst/api/javascriptcharts/AmSlicedChart.html | 34 inst/api/javascriptcharts/AmXYChart.html | 96 inst/api/javascriptcharts/AxisBase.html | 6 inst/api/javascriptcharts/CategoryAxis.html | 64 inst/api/javascriptcharts/ChartCursor.html | 16 inst/api/javascriptcharts/ChartScrollbar.html | 14 inst/api/javascriptcharts/GaugeArrow.html | 16 inst/api/javascriptcharts/GaugeAxis.html | 32 inst/api/javascriptcharts/GaugeBand.html | 30 inst/api/javascriptcharts/Guide.html | 20 inst/api/javascriptcharts/Label.html | 22 inst/api/javascriptcharts/Title.html | 18 inst/api/javascriptcharts/TrendLine.html | 22 inst/api/javascriptcharts/ValueAxis.html | 48 inst/api/javascriptmaps/AmBalloon.html | 56 inst/api/javascriptmaps/AmChart.html | 108 inst/api/javascriptmaps/AmCharts.html | 28 inst/api/javascriptmaps/AmLegend.html | 14 inst/api/javascriptmaps/AmMap.html | 66 inst/api/javascriptmaps/AreasSettings.html | 16 inst/api/javascriptmaps/ImagesSettings.html | 16 inst/api/javascriptmaps/Label.html | 22 inst/api/javascriptmaps/LinesSettings.html | 16 inst/api/javascriptmaps/MapArea.html | 28 inst/api/javascriptmaps/MapData.html | 56 inst/api/javascriptmaps/MapImage.html | 46 inst/api/javascriptmaps/MapLine.html | 30 inst/api/javascriptmaps/MapObject.html | 56 inst/api/javascriptmaps/ObjectList.html | 26 inst/api/javascriptmaps/SmallMap.html | 12 inst/api/javascriptmaps/Title.html | 18 inst/api/javascriptmaps/ZoomControl.html | 12 inst/api/javascriptstockchart/AmAngularGauge.html | 114 inst/api/javascriptstockchart/AmBalloon.html | 56 inst/api/javascriptstockchart/AmChart.html | 108 inst/api/javascriptstockchart/AmCharts.html | 28 inst/api/javascriptstockchart/AmCoordinateChart.html | 34 inst/api/javascriptstockchart/AmFunnelChart.html | 68 inst/api/javascriptstockchart/AmGanttChart.html | 34 inst/api/javascriptstockchart/AmGraph.html | 28 inst/api/javascriptstockchart/AmLegend.html | 14 inst/api/javascriptstockchart/AmPieChart.html | 72 inst/api/javascriptstockchart/AmRadarChart.html | 120 inst/api/javascriptstockchart/AmRectangularChart.html | 34 inst/api/javascriptstockchart/AmSerialChart.html | 74 inst/api/javascriptstockchart/AmSlicedChart.html | 34 inst/api/javascriptstockchart/AmStockChart.html | 26 inst/api/javascriptstockchart/AmXYChart.html | 96 inst/api/javascriptstockchart/AxisBase.html | 6 inst/api/javascriptstockchart/CategoryAxesSettings.html | 8 inst/api/javascriptstockchart/CategoryAxis.html | 64 inst/api/javascriptstockchart/ChartCursor.html | 16 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10 inst/htmlwidgets/lib/gauge.js | 48 inst/htmlwidgets/lib/pie.js | 58 inst/htmlwidgets/lib/plugins/animate/LICENSE | 402 inst/htmlwidgets/lib/plugins/animate/README.md | 216 inst/htmlwidgets/lib/plugins/animate/animate.min.js | 80 inst/htmlwidgets/lib/plugins/animate/bower.json | 54 inst/htmlwidgets/lib/plugins/animate/index.js | 4 inst/htmlwidgets/lib/plugins/animate/package.json | 20 inst/htmlwidgets/lib/plugins/dataloader/bower.json | 54 inst/htmlwidgets/lib/plugins/dataloader/index.js | 4 inst/htmlwidgets/lib/plugins/dataloader/package.json | 20 inst/htmlwidgets/lib/plugins/export/LICENSE | 404 inst/htmlwidgets/lib/plugins/export/README.md | 2836 inst/htmlwidgets/lib/plugins/export/bower.json | 54 inst/htmlwidgets/lib/plugins/export/export.css | 720 inst/htmlwidgets/lib/plugins/export/export.min.js | 2 inst/htmlwidgets/lib/plugins/export/index.js | 4 inst/htmlwidgets/lib/plugins/export/lang/fr.js | 62 inst/htmlwidgets/lib/plugins/export/lang/pt.js | 74 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man/AmLegend-class.Rd | 62 man/AmObject-class.Rd | 48 man/AmStockChart-class.Rd | 112 man/AmStockChart.Rd | 604 man/AxisBase-class.Rd | 54 man/CategoryAxis-class.Rd | 66 man/ChartCursor-class.Rd | 74 man/ChartScrollbar-class.Rd | 70 man/DataSet-class.Rd | 80 man/DataSet.Rd | 188 man/DataSetSelector-class.Rd | 66 man/DataSetSelector.Rd | 82 man/GaugeArrow-class.Rd | 62 man/GaugeArrow.Rd | 106 man/GaugeAxis-class.Rd | 60 man/GaugeAxis.Rd | 118 man/GaugeBand-class.Rd | 60 man/GaugeBand.Rd | 88 man/Guide-class.Rd | 74 man/Label-class.Rd | 70 man/Label.Rd | 146 man/PeriodSelector-class.Rd | 66 man/StockEvent-class.Rd | 68 man/StockPanel-class.Rd | 272 man/Title-class.Rd | 64 man/Title.Rd | 96 man/TrendLine-class.Rd | 92 man/TrendLine.Rd | 244 man/ValueAxis-class.Rd | 72 man/add_animate_dependency.Rd | 34 man/add_dataloader_dependency.Rd | 34 man/add_export_dependency.Rd | 36 man/add_responsive_dependency.Rd | 34 man/add_theme_dependency.Rd | 60 man/amAngularGauge.Rd | 150 man/amBarplot.Rd | 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man/getTransformTS.Rd | 141 man/initialize-AmChart.Rd | 1505 man/initialize-AmLegend.Rd | 78 man/initialize-AxisBase.Rd | 58 man/initialize-CategoryAxis.Rd | 92 man/initialize-ChartCursor.Rd | 124 man/initialize-ChartScrollbar.Rd | 134 man/initialize-Guide.Rd | 104 man/initialize-PeriodSelector.Rd | 88 man/initialize-StockEvent.Rd | 92 man/initialize-StockPanel.Rd | 414 man/initialize-ValueAxis.Rd | 74 man/listProperties-AmObject.Rd | 52 man/methods-AmObject.Rd | 164 man/plot.AmChart.Rd | 54 man/print-AmObject-method.Rd | 52 man/rAmCharts-shinymodules-ts.Rd | 482 man/rAmCharts-shinymodules.Rd | 170 man/renderAmCharts.Rd | 38 man/runExamples.Rd | 34 man/shared-generics.Rd | 158 man/show-AmChart-method.Rd | 34 man/show-AmObject-method.Rd | 40 man/show-AmStockChart-method.Rd | 34 man/stockGraph.Rd | 74 man/stockLegend.Rd | 58 tests/testthat/test_getAggregateTS.R | 81 284 files changed, 97923 insertions(+), 97588 deletions(-)
Title: Automated Generation of Data-Informed GLM Models in Task-Based
fMRI Data Analysis
Description: Analysis of task-related functional magnetic resonance imaging (fMRI) activity at the level of individual participants is commonly based on general linear modelling (GLM) that allows us to estimate to what extent the blood oxygenation level dependent (BOLD) signal can be explained by task response predictors specified in the GLM model. The predictors are constructed by convolving the hypothesised timecourse of neural activity with an assumed hemodynamic response function (HRF). To get valid and precise estimates of task response, it is important to construct a model of neural activity that best matches actual neuronal activity. The construction of models is most often driven by predefined assumptions on the components of brain activity and their duration based on the task design and specific aims of the study. However, our assumptions about the onset and duration of component processes might be wrong and can also differ across brain regions. This can result in inappropriate or suboptim [...truncated...]
Author: Jure Demsar [cre, aut],
Nina Purg [aut],
Grega Repovs [aut]
Maintainer: Jure Demsar <jure.demsar@fri.uni-lj.si>
Diff between autohrf versions 1.0.3 dated 2022-07-21 and 1.0.4 dated 2022-09-30
DESCRIPTION | 6 MD5 | 84 - NAMESPACE | 72 - NEWS.md | 37 R/data.R | 92 - R/events.R | 244 ++-- R/hrf.R | 150 +- R/modelling.R | 2225 ++++++++++++++++++++-------------------- R/signal.R | 64 - README.md | 22 build/vignette.rds |binary inst/doc/automated_search.R | 74 - inst/doc/automated_search.Rmd | 138 +- inst/doc/automated_search.html | 897 ++++++++-------- inst/doc/manual_evaluation.R | 84 - inst/doc/manual_evaluation.Rmd | 148 +- inst/doc/manual_evaluation.html | 908 ++++++++-------- man/autohrf-datasets.Rd | 106 - man/autohrf.Rd | 204 +-- man/convolve_events.Rd | 84 - man/convolve_hrf.Rd | 38 man/create_boynton_hrf.Rd | 42 man/create_child.Rd | 86 - man/create_first_generation.Rd | 46 man/create_new_generation.Rd | 96 - man/create_spm_hrf.Rd | 42 man/downsample.Rd | 38 man/evaluate_model.Rd | 124 +- man/fit_to_constraints.Rd | 154 +- man/get_best_models.Rd | 96 - man/get_parents.Rd | 34 man/plot_best_models.Rd | 94 - man/plot_events.Rd | 38 man/plot_fitness.Rd | 86 - man/plot_model.Rd | 84 - man/run_model.Rd | 56 - tests/testthat.R | 16 tests/testthat/test_events.R | 104 - tests/testthat/test_hrf.R | 56 - tests/testthat/test_modelling.R | 232 ++-- tests/testthat/test_signal.R | 30 vignettes/automated_search.Rmd | 138 +- vignettes/manual_evaluation.Rmd | 148 +- 43 files changed, 3787 insertions(+), 3730 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-09 4.7.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-27 1.0
Title: Multiple Regression and Moderated Regression Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple
regression and moderated regression, as well as interaction plots and
Johnson-Neyman regions of significance for interactions. The output
includes standardized coefficients, partial and semi-partial correlations,
collinearity diagnostics, plots of residuals, and detailed information
about simple slopes for interactions. There are numerous options for
designing interaction plots, including plots of interactions for both lm
and lme models.
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.1.4 dated 2022-02-27 and 0.1.5 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 2 +- R/SIMPLE.REGRESSION.R | 16 +++++++++++++--- R/onAttach.R |only 5 files changed, 22 insertions(+), 11 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: Text Analysis with Rules and Dictionaries for Inferring
Sentiment
Description: Measure text's sentiment with dictionaries and simple rules covering
negations and modifiers. User-supplied dictionaries are supported, including
Unicode emojis and multi-word tokens, so this package can also be used to
study constructs beyond sentiment.
Author: Christopher Belanger [aut, cre, cph]
Maintainer: Christopher Belanger <christopher.a.belanger@gmail.com>
Diff between tardis versions 0.1.2 dated 2022-09-29 and 0.1.3 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ build/partial.rdb |binary src/code.cpp | 10 +++++----- 5 files changed, 18 insertions(+), 12 deletions(-)
Title: Implements the Leiden Algorithm via an R Interface
Description: An R interface to the Leiden algorithm, an iterative community detection algorithm on networks. The algorithm is designed to converge to a partition in which all subsets of all communities are locally optimally assigned, yielding communities guaranteed to be connected. The implementation proves to be fast, scales well, and can be run on graphs of millions of nodes (as long as they can fit in memory). The original implementation was constructed as a python interface "leidenalg" found here: <https://github.com/vtraag/leidenalg>. The algorithm was originally described in Traag, V.A., Waltman, L. & van Eck, N.J. "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep 9, 5233 (2019) <doi:10.1038/s41598-019-41695-z>.
Author: Peter Kharchenko [aut],
Viktor Petukhov [aut],
V.A. Traag [ctb],
Gabor Csardi [ctb],
Tamas Nepusz [ctb],
Minh Van Nguyen [ctb],
Evan Biederstedt [cre, aut]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between leidenAlg versions 1.0.4 dated 2022-09-25 and 1.0.5 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- README.md | 2 +- src/RcppExports.cpp | 1 + src/leidenalg/include/MutableVertexPartition.h | 7 ++++--- 5 files changed, 13 insertions(+), 11 deletions(-)
Title: Read 'IPUMS' Extract Files
Description: An easy way to import census, survey and geographic data provided by 'IPUMS'
into R plus tools to help use the associated metadata to make analysis easier. 'IPUMS'
data describing 1.4 billion individuals drawn from over 750 censuses and surveys is
available free of charge from our website <https://www.ipums.org>.
Author: Greg Freedman Ellis [aut],
Derek Burk [aut, cre],
Joe Grover [ctb],
Finn Roberts [ctb],
Dan Ehrlich [ctb],
Renae Rodgers [ctb],
Minnesota Population Center [cph]
Maintainer: Derek Burk <ipums+cran@umn.edu>
Diff between ipumsr versions 0.5.0 dated 2022-06-04 and 0.5.1 dated 2022-09-30
DESCRIPTION | 18 MD5 | 48 +- NEWS.md | 247 ++++++------- R/api.R | 6 R/terra_read.r | 798 +++++++++++++++++++++--------------------- build/vignette.rds |binary inst/doc/ipums-api.R | 16 inst/doc/ipums-api.Rmd | 16 inst/doc/ipums-api.html | 16 inst/doc/ipums-bigdata.html | 4 inst/doc/ipums-cps.html | 4 inst/doc/ipums-geography.html | 4 inst/doc/ipums-nhgis.html | 6 inst/doc/ipums-terra.R | 3 inst/doc/ipums-terra.Rmd | 633 ++++++++++++++++----------------- inst/doc/ipums-terra.html | 247 ++++++------- inst/doc/ipums.html | 4 inst/doc/value-labels.html | 4 inst/rmarkdown |only man/ipums_callback.Rd | 30 - man/read_ipums_micro_yield.Rd | 8 man/read_terra_raster.Rd | 4 tests/testthat/test_terra.r | 17 vignettes/ipums-api.Rmd | 16 vignettes/ipums-terra.Rmd | 633 ++++++++++++++++----------------- 25 files changed, 1442 insertions(+), 1340 deletions(-)
Title: Clustering on Network of Samples
Description: Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.
Author: Viktor Petukhov [aut],
Nikolas Barkas [aut],
Peter Kharchenko [aut],
Weiliang Qiu [ctb],
Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between conos versions 1.4.8 dated 2022-09-26 and 1.4.9 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 6 +++--- README.md | 2 +- src/largeVis.cpp | 22 +++++++++++++++++++--- 4 files changed, 26 insertions(+), 10 deletions(-)
Title: The R WINS Package
Description: Calculate the win statistics (win ratio, net benefit and win odds) for prioritized multiple endpoints, plot the win statistics and win proportions over study time if at least one time-to-event endpoint is analyzed, and simulate datasets with dependent endpoints. The package can handle any type of outcomes (continuous, ordinal, binary, time-to-event) and allow users to perform stratified analysis and inverse probability of censoring weighting (IPCW) analysis.
Author: Ying Cui [aut, cre],
Bo Huang [aut]
Maintainer: Ying Cui <cuiyingbeicheng@gmail.com>
Diff between WINS versions 1.3 dated 2022-09-09 and 1.3.2 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/partition_t.plot.R | 7 +++++-- R/stat_t.plot.R | 7 +++++-- R/win.stat.R | 43 +++++++++++++++++++++++++++++++++++-------- inst/doc/vignette.pdf |binary man/win.stat.Rd | 9 +++++++++ 7 files changed, 63 insertions(+), 21 deletions(-)
Title: Unicode Data and Utilities
Description: Data from Unicode 15.0.0 and related utilities.
Author: Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between Unicode versions 14.0.0-1 dated 2021-09-21 and 15.0.0-1 dated 2022-09-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/basics.R | 2 +- R/charfuns.R | 2 +- R/sysdata.rda |binary 5 files changed, 10 insertions(+), 10 deletions(-)
Title: Selected ISO Codes
Description: ISO language, territory, currency, script and character codes.
Provides ISO 639 language codes, ISO 3166 territory codes, ISO 4217
currency codes, ISO 15924 script codes, and the ISO 8859 character codes
as well as the UN M.49 area codes.
Author: Christian Buchta [aut],
Kurt Hornik [aut, cre]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between ISOcodes versions 2022.01.10 dated 2022-01-10 and 2022.09.29 dated 2022-09-30
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- data/ISO_15924.rda |binary data/ISO_3166_1.rda |binary data/ISO_3166_2.rda |binary data/ISO_3166_3.rda |binary data/ISO_4217.rda |binary data/ISO_4217_Historic.rda |binary data/ISO_639_2.rda |binary data/ISO_639_3.rda |binary data/ISO_639_3_Retirements.rda |binary data/ISO_639_5.rda |binary data/ISO_8859.rda |binary data/UN_M.49_Countries.rda |binary data/UN_M.49_Regions.rda |binary 15 files changed, 17 insertions(+), 17 deletions(-)