Title: Perform Pharmacokinetic Non-Compartmental Analysis
Description: Compute standard Non-Compartmental Analysis (NCA) parameters for
typical pharmacokinetic analyses and summarize them.
Author: Bill Denney [aut, cre] ,
Clare Buckeridge [aut],
Sridhar Duvvuri [ctb]
Maintainer: Bill Denney <wdenney@humanpredictions.com>
Diff between PKNCA versions 0.9.5 dated 2021-10-29 and 0.10.0 dated 2022-10-15
PKNCA-0.10.0/PKNCA/DESCRIPTION | 16 PKNCA-0.10.0/PKNCA/MD5 | 474 +++--- PKNCA-0.10.0/PKNCA/NAMESPACE | 103 - PKNCA-0.10.0/PKNCA/NEWS.md | 55 PKNCA-0.10.0/PKNCA/R/001-add.interval.col.R | 112 - PKNCA-0.10.0/PKNCA/R/002-pk.business.rules.R | 44 PKNCA-0.10.0/PKNCA/R/AIC.list.R | 22 PKNCA-0.10.0/PKNCA/R/PKNCA.R | 10 PKNCA-0.10.0/PKNCA/R/PKNCA.options.R | 71 PKNCA-0.10.0/PKNCA/R/auc.R | 169 +- PKNCA-0.10.0/PKNCA/R/aucint.R | 36 PKNCA-0.10.0/PKNCA/R/auciv.R |only PKNCA-0.10.0/PKNCA/R/check.intervals.R | 51 PKNCA-0.10.0/PKNCA/R/choose.intervals.R | 67 PKNCA-0.10.0/PKNCA/R/class-PKNCAconc.R | 170 +- PKNCA-0.10.0/PKNCA/R/class-PKNCAdata.R | 117 + PKNCA-0.10.0/PKNCA/R/class-PKNCAdose.R | 86 - PKNCA-0.10.0/PKNCA/R/class-PKNCAresults.R | 193 +- PKNCA-0.10.0/PKNCA/R/class-general.R | 39 PKNCA-0.10.0/PKNCA/R/cleaners.R | 50 PKNCA-0.10.0/PKNCA/R/dplyr.R |only PKNCA-0.10.0/PKNCA/R/exclude.R | 32 PKNCA-0.10.0/PKNCA/R/exclude_nca.R | 4 PKNCA-0.10.0/PKNCA/R/general.functions.R | 52 PKNCA-0.10.0/PKNCA/R/half.life.R | 165 +- PKNCA-0.10.0/PKNCA/R/impute.R |only PKNCA-0.10.0/PKNCA/R/interp_extrap_helpers.R |only PKNCA-0.10.0/PKNCA/R/interpolate.conc.R | 245 +-- PKNCA-0.10.0/PKNCA/R/parseFormula.R | 47 PKNCA-0.10.0/PKNCA/R/pk.calc.all.R | 550 ++++--- PKNCA-0.10.0/PKNCA/R/pk.calc.c0.R | 33 PKNCA-0.10.0/PKNCA/R/pk.calc.simple.R | 278 ++- PKNCA-0.10.0/PKNCA/R/pk.calc.urine.R | 18 PKNCA-0.10.0/PKNCA/R/prepare_data.R | 168 +- PKNCA-0.10.0/PKNCA/R/provenance.R | 14 PKNCA-0.10.0/PKNCA/R/sparse.R |only PKNCA-0.10.0/PKNCA/R/superposition.R | 85 - PKNCA-0.10.0/PKNCA/R/time.above.R | 52 PKNCA-0.10.0/PKNCA/R/time_calc.R | 29 PKNCA-0.10.0/PKNCA/R/tss.R | 46 PKNCA-0.10.0/PKNCA/R/tss.monoexponential.R | 180 +- PKNCA-0.10.0/PKNCA/R/tss.stepwise.linear.R | 56 PKNCA-0.10.0/PKNCA/R/unit-support.R |only PKNCA-0.10.0/PKNCA/R/zzz-pk.calc.dn.R |only PKNCA-0.10.0/PKNCA/README.md | 28 PKNCA-0.10.0/PKNCA/build/vignette.rds |binary PKNCA-0.10.0/PKNCA/inst/WORDLIST |only PKNCA-0.10.0/PKNCA/inst/doc/v01-introduction-and-usage.R |only PKNCA-0.10.0/PKNCA/inst/doc/v01-introduction-and-usage.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v01-introduction-and-usage.html |only PKNCA-0.10.0/PKNCA/inst/doc/v02-example-theophylline.R |only PKNCA-0.10.0/PKNCA/inst/doc/v02-example-theophylline.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v02-example-theophylline.html |only PKNCA-0.10.0/PKNCA/inst/doc/v03-selection-of-calculation-intervals.R |only PKNCA-0.10.0/PKNCA/inst/doc/v03-selection-of-calculation-intervals.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v03-selection-of-calculation-intervals.html |only PKNCA-0.10.0/PKNCA/inst/doc/v04-sparse.R |only PKNCA-0.10.0/PKNCA/inst/doc/v04-sparse.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v04-sparse.html |only PKNCA-0.10.0/PKNCA/inst/doc/v05-auc-calculation-with-PKNCA.R |only PKNCA-0.10.0/PKNCA/inst/doc/v05-auc-calculation-with-PKNCA.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v05-auc-calculation-with-PKNCA.html |only PKNCA-0.10.0/PKNCA/inst/doc/v06-half-life-calculation.R |only PKNCA-0.10.0/PKNCA/inst/doc/v06-half-life-calculation.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v06-half-life-calculation.html |only PKNCA-0.10.0/PKNCA/inst/doc/v07-post-processing.R |only PKNCA-0.10.0/PKNCA/inst/doc/v07-post-processing.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v07-post-processing.html |only PKNCA-0.10.0/PKNCA/inst/doc/v07-unit-conversion.R |only PKNCA-0.10.0/PKNCA/inst/doc/v07-unit-conversion.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v07-unit-conversion.html |only PKNCA-0.10.0/PKNCA/inst/doc/v08-data-imputation.R |only PKNCA-0.10.0/PKNCA/inst/doc/v08-data-imputation.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v08-data-imputation.html |only PKNCA-0.10.0/PKNCA/inst/doc/v20-superposition.R |only PKNCA-0.10.0/PKNCA/inst/doc/v20-superposition.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v20-superposition.html |only PKNCA-0.10.0/PKNCA/inst/doc/v21-methods-for-dose-aware-interpolation-and-extrapolation.R |only PKNCA-0.10.0/PKNCA/inst/doc/v21-methods-for-dose-aware-interpolation-and-extrapolation.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v21-methods-for-dose-aware-interpolation-and-extrapolation.html |only PKNCA-0.10.0/PKNCA/inst/doc/v22-time-to-steady-state.R |only PKNCA-0.10.0/PKNCA/inst/doc/v22-time-to-steady-state.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v22-time-to-steady-state.html |only PKNCA-0.10.0/PKNCA/inst/doc/v30-training-session.R |only PKNCA-0.10.0/PKNCA/inst/doc/v30-training-session.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v30-training-session.html |only PKNCA-0.10.0/PKNCA/inst/doc/v40-options-for-controlling-PKNCA.R |only PKNCA-0.10.0/PKNCA/inst/doc/v40-options-for-controlling-PKNCA.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v40-options-for-controlling-PKNCA.html |only PKNCA-0.10.0/PKNCA/inst/doc/v60-PKNCA-validation.R |only PKNCA-0.10.0/PKNCA/inst/doc/v60-PKNCA-validation.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v60-PKNCA-validation.html |only PKNCA-0.10.0/PKNCA/inst/doc/v80-writing-parameter-functions.R |only PKNCA-0.10.0/PKNCA/inst/doc/v80-writing-parameter-functions.Rmd |only PKNCA-0.10.0/PKNCA/inst/doc/v80-writing-parameter-functions.html |only PKNCA-0.10.0/PKNCA/man/AIC.list.Rd | 58 PKNCA-0.10.0/PKNCA/man/PKNCA.Rd | 4 PKNCA-0.10.0/PKNCA/man/PKNCA.choose.option.Rd | 62 PKNCA-0.10.0/PKNCA/man/PKNCA.options.Rd | 6 PKNCA-0.10.0/PKNCA/man/PKNCA_impute_fun_list.Rd |only PKNCA-0.10.0/PKNCA/man/PKNCA_impute_method.Rd |only PKNCA-0.10.0/PKNCA/man/PKNCAconc.Rd | 179 +- PKNCA-0.10.0/PKNCA/man/PKNCAdata.Rd | 35 PKNCA-0.10.0/PKNCA/man/PKNCAdose.Rd | 44 PKNCA-0.10.0/PKNCA/man/PKNCAresults.Rd | 2 PKNCA-0.10.0/PKNCA/man/add.interval.col.Rd | 54 PKNCA-0.10.0/PKNCA/man/addProvenance.Rd | 6 PKNCA-0.10.0/PKNCA/man/add_impute_to_intervals.Rd |only PKNCA-0.10.0/PKNCA/man/any_sparse_dense_in_interval.Rd |only PKNCA-0.10.0/PKNCA/man/as.data.frame.PKNCAresults.Rd | 48 PKNCA-0.10.0/PKNCA/man/as_sparse_pk.Rd |only PKNCA-0.10.0/PKNCA/man/business.mean.Rd | 138 - PKNCA-0.10.0/PKNCA/man/check.conc.time.Rd | 74 PKNCA-0.10.0/PKNCA/man/check.conversion.Rd | 46 PKNCA-0.10.0/PKNCA/man/check.interval.deps.Rd | 62 PKNCA-0.10.0/PKNCA/man/check.interval.specification.Rd | 76 PKNCA-0.10.0/PKNCA/man/checkProvenance.Rd | 2 PKNCA-0.10.0/PKNCA/man/choose.auc.intervals.Rd | 120 - PKNCA-0.10.0/PKNCA/man/choose_interp_extrap_method.Rd |only PKNCA-0.10.0/PKNCA/man/clean.conc.blq.Rd | 16 PKNCA-0.10.0/PKNCA/man/clean.conc.na.Rd | 6 PKNCA-0.10.0/PKNCA/man/cov_holder.Rd |only PKNCA-0.10.0/PKNCA/man/exclude.Rd | 24 PKNCA-0.10.0/PKNCA/man/exclude_nca.Rd | 10 PKNCA-0.10.0/PKNCA/man/filter.PKNCAresults.Rd |only PKNCA-0.10.0/PKNCA/man/find.tau.Rd | 84 - PKNCA-0.10.0/PKNCA/man/findOperator.Rd | 66 PKNCA-0.10.0/PKNCA/man/fit_half_life.Rd | 14 PKNCA-0.10.0/PKNCA/man/formula.PKNCAconc.Rd | 44 PKNCA-0.10.0/PKNCA/man/formula.parseFormula.Rd | 62 PKNCA-0.10.0/PKNCA/man/geomean.Rd | 86 - PKNCA-0.10.0/PKNCA/man/get.best.model.Rd | 46 PKNCA-0.10.0/PKNCA/man/get.first.model.Rd | 38 PKNCA-0.10.0/PKNCA/man/get.interval.cols.Rd | 60 PKNCA-0.10.0/PKNCA/man/get.parameter.deps.Rd | 4 PKNCA-0.10.0/PKNCA/man/getAttributeColumn.Rd | 2 PKNCA-0.10.0/PKNCA/man/getColumnValueOrNot.Rd | 16 PKNCA-0.10.0/PKNCA/man/getDataName.Rd | 92 - PKNCA-0.10.0/PKNCA/man/getDepVar.Rd | 54 PKNCA-0.10.0/PKNCA/man/getGroups.PKNCAconc.Rd | 22 PKNCA-0.10.0/PKNCA/man/getIndepVar.Rd | 54 PKNCA-0.10.0/PKNCA/man/group_by.PKNCAresults.Rd |only PKNCA-0.10.0/PKNCA/man/group_vars.PKNCAconc.Rd | 4 PKNCA-0.10.0/PKNCA/man/inner_join.PKNCAresults.Rd |only PKNCA-0.10.0/PKNCA/man/interp.extrap.conc.Rd | 8 PKNCA-0.10.0/PKNCA/man/interp_extrap_conc_method.Rd |only PKNCA-0.10.0/PKNCA/man/is_sparse_pk.Rd |only PKNCA-0.10.0/PKNCA/man/model.frame.PKNCAconc.Rd | 52 PKNCA-0.10.0/PKNCA/man/mutate.PKNCAresults.Rd |only PKNCA-0.10.0/PKNCA/man/parseFormula.Rd | 2 PKNCA-0.10.0/PKNCA/man/pk.calc.ae.Rd | 60 PKNCA-0.10.0/PKNCA/man/pk.calc.aucint.Rd | 12 PKNCA-0.10.0/PKNCA/man/pk.calc.auciv.Rd |only PKNCA-0.10.0/PKNCA/man/pk.calc.aucpext.Rd | 6 PKNCA-0.10.0/PKNCA/man/pk.calc.auxc.Rd | 34 PKNCA-0.10.0/PKNCA/man/pk.calc.c0.Rd | 152 - PKNCA-0.10.0/PKNCA/man/pk.calc.cav.Rd | 48 PKNCA-0.10.0/PKNCA/man/pk.calc.ceoi.Rd | 2 PKNCA-0.10.0/PKNCA/man/pk.calc.cl.Rd | 8 PKNCA-0.10.0/PKNCA/man/pk.calc.clast.obs.Rd | 46 PKNCA-0.10.0/PKNCA/man/pk.calc.clr.Rd | 58 PKNCA-0.10.0/PKNCA/man/pk.calc.cmax.Rd | 58 PKNCA-0.10.0/PKNCA/man/pk.calc.ctrough.Rd | 44 PKNCA-0.10.0/PKNCA/man/pk.calc.deg.fluc.Rd | 48 PKNCA-0.10.0/PKNCA/man/pk.calc.dn.Rd | 2 PKNCA-0.10.0/PKNCA/man/pk.calc.f.Rd | 50 PKNCA-0.10.0/PKNCA/man/pk.calc.fe.Rd | 56 PKNCA-0.10.0/PKNCA/man/pk.calc.half.life.Rd | 24 PKNCA-0.10.0/PKNCA/man/pk.calc.mrt.Rd | 78 - PKNCA-0.10.0/PKNCA/man/pk.calc.mrt.md.Rd | 8 PKNCA-0.10.0/PKNCA/man/pk.calc.sparse_auc.Rd |only PKNCA-0.10.0/PKNCA/man/pk.calc.swing.Rd | 46 PKNCA-0.10.0/PKNCA/man/pk.calc.time_above.Rd | 79 - PKNCA-0.10.0/PKNCA/man/pk.calc.tlag.Rd | 46 PKNCA-0.10.0/PKNCA/man/pk.calc.tlast.Rd | 62 PKNCA-0.10.0/PKNCA/man/pk.calc.tmax.Rd | 74 PKNCA-0.10.0/PKNCA/man/pk.calc.vd.Rd | 10 PKNCA-0.10.0/PKNCA/man/pk.nca.Rd | 70 PKNCA-0.10.0/PKNCA/man/pk.nca.interval.Rd | 184 +- PKNCA-0.10.0/PKNCA/man/pk.nca.intervals.Rd | 9 PKNCA-0.10.0/PKNCA/man/pk.tss.Rd | 60 PKNCA-0.10.0/PKNCA/man/pk.tss.data.prep.Rd | 112 - PKNCA-0.10.0/PKNCA/man/pk.tss.monoexponential.Rd | 114 - PKNCA-0.10.0/PKNCA/man/pk.tss.monoexponential.individual.Rd | 78 - PKNCA-0.10.0/PKNCA/man/pk.tss.monoexponential.population.Rd | 82 - PKNCA-0.10.0/PKNCA/man/pk.tss.stepwise.linear.Rd | 112 - PKNCA-0.10.0/PKNCA/man/pk_nca_result_to_df.Rd |only PKNCA-0.10.0/PKNCA/man/pknca_find_units_param.Rd |only PKNCA-0.10.0/PKNCA/man/pknca_unit_conversion.Rd |only PKNCA-0.10.0/PKNCA/man/pknca_units_add_paren.Rd |only PKNCA-0.10.0/PKNCA/man/pknca_units_table.Rd |only PKNCA-0.10.0/PKNCA/man/print.PKNCAconc.Rd | 66 PKNCA-0.10.0/PKNCA/man/print.summary_PKNCAresults.Rd | 46 PKNCA-0.10.0/PKNCA/man/reexports.Rd | 12 PKNCA-0.10.0/PKNCA/man/roundString.Rd | 74 PKNCA-0.10.0/PKNCA/man/roundingSummarize.Rd | 44 PKNCA-0.10.0/PKNCA/man/setAttributeColumn.Rd | 4 PKNCA-0.10.0/PKNCA/man/setDuration.Rd | 58 PKNCA-0.10.0/PKNCA/man/setExcludeColumn.Rd | 2 PKNCA-0.10.0/PKNCA/man/setRoute.Rd | 56 PKNCA-0.10.0/PKNCA/man/signifString.Rd | 94 - PKNCA-0.10.0/PKNCA/man/sparse_auc_weight_linear.Rd |only PKNCA-0.10.0/PKNCA/man/sparse_mean.Rd |only PKNCA-0.10.0/PKNCA/man/sparse_pk_attribute.Rd |only PKNCA-0.10.0/PKNCA/man/sparse_to_dense_pk.Rd |only PKNCA-0.10.0/PKNCA/man/summary.PKNCAdata.Rd | 36 PKNCA-0.10.0/PKNCA/man/summary.PKNCAresults.Rd | 19 PKNCA-0.10.0/PKNCA/man/superposition.Rd | 204 +- PKNCA-0.10.0/PKNCA/man/time_calc.Rd | 64 PKNCA-0.10.0/PKNCA/man/tss.monoexponential.generate.formula.Rd | 38 PKNCA-0.10.0/PKNCA/man/var_sparse_auc.Rd |only PKNCA-0.10.0/PKNCA/tests/spelling.R |only PKNCA-0.10.0/PKNCA/tests/testthat/generate.data.R | 6 PKNCA-0.10.0/PKNCA/tests/testthat/test-001-add.interval.col.R | 224 +- PKNCA-0.10.0/PKNCA/tests/testthat/test-AIC.list.R | 26 PKNCA-0.10.0/PKNCA/tests/testthat/test-PKNCA.options.R | 5 PKNCA-0.10.0/PKNCA/tests/testthat/test-auc.R | 251 +-- PKNCA-0.10.0/PKNCA/tests/testthat/test-aucint.R | 31 PKNCA-0.10.0/PKNCA/tests/testthat/test-auciv.R |only PKNCA-0.10.0/PKNCA/tests/testthat/test-check.intervals.R | 35 PKNCA-0.10.0/PKNCA/tests/testthat/test-choose-intervals.R | 60 PKNCA-0.10.0/PKNCA/tests/testthat/test-class-PKNCAconc.R | 115 + PKNCA-0.10.0/PKNCA/tests/testthat/test-class-PKNCAdata.R | 126 - PKNCA-0.10.0/PKNCA/tests/testthat/test-class-PKNCAdose.R | 67 PKNCA-0.10.0/PKNCA/tests/testthat/test-class-PKNCAresults.R | 291 +++ PKNCA-0.10.0/PKNCA/tests/testthat/test-class-general.R | 10 PKNCA-0.10.0/PKNCA/tests/testthat/test-cleaners.R | 64 PKNCA-0.10.0/PKNCA/tests/testthat/test-dplyr.R |only PKNCA-0.10.0/PKNCA/tests/testthat/test-exclude.R | 42 PKNCA-0.10.0/PKNCA/tests/testthat/test-exclude_nca.R | 12 PKNCA-0.10.0/PKNCA/tests/testthat/test-general.functions.R | 86 - PKNCA-0.10.0/PKNCA/tests/testthat/test-half.life.R | 57 PKNCA-0.10.0/PKNCA/tests/testthat/test-impute.R |only PKNCA-0.10.0/PKNCA/tests/testthat/test-interp_extrap_helpers.R |only PKNCA-0.10.0/PKNCA/tests/testthat/test-interpolate.conc.R | 769 +++++----- PKNCA-0.10.0/PKNCA/tests/testthat/test-parseFormula.R | 88 - PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.business.rules.R | 24 PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.calc.all.R | 214 ++ PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.calc.c0.R | 14 PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.calc.dn.R | 6 PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.calc.simple.R | 153 + PKNCA-0.10.0/PKNCA/tests/testthat/test-pk.calc.urine.R | 4 PKNCA-0.10.0/PKNCA/tests/testthat/test-prepare_data.R | 43 PKNCA-0.10.0/PKNCA/tests/testthat/test-provenance.R | 12 PKNCA-0.10.0/PKNCA/tests/testthat/test-sparse.R |only PKNCA-0.10.0/PKNCA/tests/testthat/test-superpostion.R | 140 + PKNCA-0.10.0/PKNCA/tests/testthat/test-time.above.R | 42 PKNCA-0.10.0/PKNCA/tests/testthat/test-time.to.steady.state.R | 528 ++++-- PKNCA-0.10.0/PKNCA/tests/testthat/test-time_calc.R | 12 PKNCA-0.10.0/PKNCA/tests/testthat/test-unit-support.R |only PKNCA-0.10.0/PKNCA/vignettes/v01-introduction-and-usage.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v02-example-theophylline.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v03-selection-of-calculation-intervals.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v04-sparse.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v05-auc-calculation-with-PKNCA.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v06-half-life-calculation.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v07-post-processing.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v07-unit-conversion.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v08-data-imputation.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v20-superposition.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v21-methods-for-dose-aware-interpolation-and-extrapolation.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v22-time-to-steady-state.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v30-training-session.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v40-options-for-controlling-PKNCA.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v60-PKNCA-validation.Rmd |only PKNCA-0.10.0/PKNCA/vignettes/v80-writing-parameter-functions.Rmd |only PKNCA-0.9.5/PKNCA/R/pk.calc.dn.R |only PKNCA-0.9.5/PKNCA/inst/doc/AUC-Calculation-with-PKNCA.R |only PKNCA-0.9.5/PKNCA/inst/doc/AUC-Calculation-with-PKNCA.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/AUC-Calculation-with-PKNCA.html |only PKNCA-0.9.5/PKNCA/inst/doc/Example-theophylline.R |only PKNCA-0.9.5/PKNCA/inst/doc/Example-theophylline.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Example-theophylline.html |only PKNCA-0.9.5/PKNCA/inst/doc/Half-Life-Calculation.R |only PKNCA-0.9.5/PKNCA/inst/doc/Half-Life-Calculation.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Half-Life-Calculation.html |only PKNCA-0.9.5/PKNCA/inst/doc/Introduction-and-Usage.R |only PKNCA-0.9.5/PKNCA/inst/doc/Introduction-and-Usage.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Introduction-and-Usage.html |only PKNCA-0.9.5/PKNCA/inst/doc/Methods-for-Dose-Aware-Interpolation-and-Extrapolation.R |only PKNCA-0.9.5/PKNCA/inst/doc/Methods-for-Dose-Aware-Interpolation-and-Extrapolation.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Methods-for-Dose-Aware-Interpolation-and-Extrapolation.html |only PKNCA-0.9.5/PKNCA/inst/doc/Options-for-Controlling-PKNCA.R |only PKNCA-0.9.5/PKNCA/inst/doc/Options-for-Controlling-PKNCA.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Options-for-Controlling-PKNCA.html |only PKNCA-0.9.5/PKNCA/inst/doc/PKNCA-validation.R |only PKNCA-0.9.5/PKNCA/inst/doc/PKNCA-validation.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/PKNCA-validation.html |only PKNCA-0.9.5/PKNCA/inst/doc/Post-Processing.R |only PKNCA-0.9.5/PKNCA/inst/doc/Post-Processing.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Post-Processing.html |only PKNCA-0.9.5/PKNCA/inst/doc/Selection-of-Calculation-Intervals.R |only PKNCA-0.9.5/PKNCA/inst/doc/Selection-of-Calculation-Intervals.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Selection-of-Calculation-Intervals.html |only PKNCA-0.9.5/PKNCA/inst/doc/Superposition.R |only PKNCA-0.9.5/PKNCA/inst/doc/Superposition.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Superposition.html |only PKNCA-0.9.5/PKNCA/inst/doc/Writing-Parameter-Functions.R |only PKNCA-0.9.5/PKNCA/inst/doc/Writing-Parameter-Functions.Rmd |only PKNCA-0.9.5/PKNCA/inst/doc/Writing-Parameter-Functions.html |only PKNCA-0.9.5/PKNCA/man/getData.PKNCAconc.Rd |only PKNCA-0.9.5/PKNCA/man/getData.PKNCAdata.Rd |only PKNCA-0.9.5/PKNCA/man/getData.PKNCAresults.Rd |only PKNCA-0.9.5/PKNCA/vignettes/AUC-Calculation-with-PKNCA.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Example-theophylline.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Half-Life-Calculation.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Introduction-and-Usage.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Methods-for-Dose-Aware-Interpolation-and-Extrapolation.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Options-for-Controlling-PKNCA.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/PKNCA-validation.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Post-Processing.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Selection-of-Calculation-Intervals.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Superposition.Rmd |only PKNCA-0.9.5/PKNCA/vignettes/Writing-Parameter-Functions.Rmd |only 314 files changed, 7048 insertions(+), 5107 deletions(-)
Title: Friendly R Startup Configuration
Description: Adds support for R startup configuration via '.Renviron.d' and '.Rprofile.d' directories in addition to '.Renviron' and '.Rprofile' files. This makes it possible to keep private / secret environment variables separate from other environment variables. It also makes it easier to share specific startup settings by simply copying a file to a directory.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between startup versions 0.18.0 dated 2022-05-14 and 0.19.0 dated 2022-10-15
DESCRIPTION | 8 ++--- MD5 | 34 +++++++++++----------- NEWS.md | 66 ++++++++++++++++++++++++++++++++------------ R/check.R | 48 +++++++++++++++++++++++--------- R/filter_files.R | 16 ++++++++-- R/options.R | 16 +++++++++- R/startup.R | 56 ++++++++++++++++++++++++++++++------- R/sysinfo.R | 18 +++++++++++- README.md | 16 ++++++---- build/vignette.rds |binary inst/doc/startup-intro.html | 12 ++++---- inst/doc/startup-intro.md | 14 ++++++--- man/find_rprofile.Rd | 6 ++-- man/find_rprofile_d.Rd | 6 ++-- man/install.Rd | 6 ++-- man/startup.Rd | 8 ++--- man/startup.options.Rd | 16 +++++++++- vignettes/startup-intro.md | 14 ++++++--- 18 files changed, 256 insertions(+), 104 deletions(-)
Title: Evapotranspiration Simulation and Soil Water Balance under Field
Description: Supports the calculation of meteorological characteristics in
evapotranspiration research and reference crop evapotranspiration, and offers
three models to simulate crop evapotranspiration and soil water balance in
the field, including single crop coefficient and dual crop coefficient,
as well as the Shuttleworth-Wallace model. These calculations main refer to
Allen et al.(1998, ISBN:92-5-104219-5), Teh (2006, ISBN:1-58-112-998-X), and
Liu et al.(2006) <doi:10.1016/j.agwat.2006.01.018>.
Author: Minguo Liu [aut, cre],
Huimin Yang [dtc, fnd]
Maintainer: Minguo Liu <liumg@cau.edu.cn>
Diff between simET versions 1.0.0 dated 2022-09-30 and 1.0.1 dated 2022-10-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/Estimate.R | 3 +-- R/model_DualKc.R | 15 ++++++++------- R/model_Single_Kc.R | 7 ++++--- 5 files changed, 21 insertions(+), 20 deletions(-)
Title: Tables, Labels and Some Useful Functions from Spreadsheets and
'SPSS' Statistics
Description: Package computes and displays tables with support for 'SPSS'-style
labels, multiple and nested banners, weights, multiple-response variables
and significance testing. There are facilities for nice output of tables
in 'knitr', 'Shiny', '*.xlsx' files, R and 'Jupyter' notebooks. Methods
for labelled variables add value labels support to base R functions and to
some functions from other packages. Additionally, the package brings
popular data transformation functions from 'SPSS' Statistics and 'Excel':
'RECODE', 'COUNT', 'COUNTIF', 'VLOOKUP' and etc.
These functions are very useful for data processing in marketing research
surveys. Package intended to help people to move data
processing from 'Excel' and 'SPSS' to R.
Author: Gregory Demin [aut, cre],
Sebastian Jeworutzki [ctb]
Maintainer: Gregory Demin <gdemin@gmail.com>
Diff between expss versions 0.11.1 dated 2022-01-07 and 0.11.2 dated 2022-10-15
DESCRIPTION | 8 MD5 | 30 +- NAMESPACE | 1 NEWS | 4 R/S3_methods.R | 14 + R/aaa_utils.R | 2 R/write_labelled.R | 4 build/vignette.rds |binary inst/doc/examples.html | 362 +++++++++++++++++++++++++++------ inst/doc/labels-support.html | 317 +++++++++++++++++++++++++--- inst/doc/tables-with-labels.html | 331 ++++++++++++++++++++++++++---- inst/doc/xlsx-export.html | 253 ++++++++++++++++++++--- tests/testthat/test_cro_fun_extended.R | 40 ++- tests/testthat/test_custom_tables.R | 10 tests/testthat/test_htmlTable.R | 2 tests/testthat/test_write_labelled.R | 20 - 16 files changed, 1183 insertions(+), 215 deletions(-)
Title: eXtensible Time Series
Description: Provide for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user level customization and extension, while simplifying cross-class interoperability.
Author: Jeffrey A. Ryan [aut, cph],
Joshua M. Ulrich [cre, aut],
Ross Bennett [ctb],
Corwin Joy [ctb]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between xts versions 0.12.1 dated 2020-09-09 and 0.12.2 dated 2022-10-15
xts-0.12.1/xts/R/fts.R |only xts-0.12.1/xts/inst/unitTests/Makefile |only xts-0.12.1/xts/inst/unitTests/runit.fts.R |only xts-0.12.2/xts/DESCRIPTION | 8 xts-0.12.2/xts/MD5 | 96 ++--- xts-0.12.2/xts/NAMESPACE | 9 xts-0.12.2/xts/NEWS | 97 +++++ xts-0.12.2/xts/R/Ops.xts.R | 4 xts-0.12.2/xts/R/adj.time.R | 2 xts-0.12.2/xts/R/endpoints.R | 28 + xts-0.12.2/xts/R/first.R | 37 +- xts-0.12.2/xts/R/index.R | 2 xts-0.12.2/xts/R/irts.R | 7 xts-0.12.2/xts/R/last.R | 37 +- xts-0.12.2/xts/R/merge.R | 7 xts-0.12.2/xts/R/period.apply.R | 13 xts-0.12.2/xts/R/plot.R | 345 +++++++++++++-------- xts-0.12.2/xts/R/rollapply.xts.R | 32 - xts-0.12.2/xts/R/split.R | 25 + xts-0.12.2/xts/R/tclass.R | 2 xts-0.12.2/xts/R/timeSeries.R | 14 xts-0.12.2/xts/R/ts.R | 30 - xts-0.12.2/xts/R/tzone.R | 49 ++ xts-0.12.2/xts/R/xts.R | 8 xts-0.12.2/xts/R/xts.methods.R | 16 xts-0.12.2/xts/R/zzz.R | 1 xts-0.12.2/xts/build/vignette.rds |binary xts-0.12.2/xts/inst/doc/xts-faq.pdf |binary xts-0.12.2/xts/inst/doc/xts.pdf |binary xts-0.12.2/xts/inst/unitTests/runit.Ops.R | 9 xts-0.12.2/xts/inst/unitTests/runit.endpoints.R | 82 ++++ xts-0.12.2/xts/inst/unitTests/runit.first-last.R | 53 +++ xts-0.12.2/xts/inst/unitTests/runit.index.R | 21 + xts-0.12.2/xts/inst/unitTests/runit.merge.R | 44 ++ xts-0.12.2/xts/inst/unitTests/runit.plot.R | 23 + xts-0.12.2/xts/inst/unitTests/runit.split.R | 43 ++ xts-0.12.2/xts/inst/unitTests/runit.subset.R | 76 ++++ xts-0.12.2/xts/inst/unitTests/runit.tclass.R | 13 xts-0.12.2/xts/inst/unitTests/runit.timeBasedSeq.R | 2 xts-0.12.2/xts/inst/unitTests/runit.tzone.R | 13 xts-0.12.2/xts/inst/unitTests/runit.xts.methods.R | 16 xts-0.12.2/xts/man/S4.Rd |only xts-0.12.2/xts/man/as.xts.Rd | 1 xts-0.12.2/xts/man/as.xts.methods.Rd | 13 xts-0.12.2/xts/man/axTicksByTime.Rd | 9 xts-0.12.2/xts/man/plot.xts.Rd | 16 xts-0.12.2/xts/src/merge.c | 79 +++- xts-0.12.2/xts/src/period_apply.c | 38 +- xts-0.12.2/xts/src/rbind.c | 2 xts-0.12.2/xts/src/tryXts.c | 13 xts-0.12.2/xts/tests/doRUnit.R | 5 51 files changed, 1099 insertions(+), 341 deletions(-)
Title: Financial Time Series Objects (Rmetrics)
Description: 'S4' classes and various tools for financial time series:
Basic functions such as scaling and sorting, subsetting,
mathematical operations and statistical functions.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Georgi N. Boshnakov [cre, ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeSeries versions 4021.104 dated 2022-07-16 and 4021.105 dated 2022-10-15
timeSeries-4021.104/timeSeries/man/methods-base.Rd |only timeSeries-4021.105/timeSeries/ChangeLog | 6 timeSeries-4021.105/timeSeries/DESCRIPTION | 18 timeSeries-4021.105/timeSeries/MD5 | 204 +++-- timeSeries-4021.105/timeSeries/NAMESPACE | 150 ++-- timeSeries-4021.105/timeSeries/NEWS.md |only timeSeries-4021.105/timeSeries/R/base-apply.R | 7 timeSeries-4021.105/timeSeries/R/base-applySeries.R | 349 +++++----- timeSeries-4021.105/timeSeries/R/base-cbind.R | 2 timeSeries-4021.105/timeSeries/R/base-diff.R | 11 timeSeries-4021.105/timeSeries/R/base-dim.R | 2 timeSeries-4021.105/timeSeries/R/base-merge.R | 9 timeSeries-4021.105/timeSeries/R/base-rev.R | 8 timeSeries-4021.105/timeSeries/R/base-scale.R | 10 timeSeries-4021.105/timeSeries/R/base-sort.R | 10 timeSeries-4021.105/timeSeries/R/base-start.R | 16 timeSeries-4021.105/timeSeries/R/base-summary.R |only timeSeries-4021.105/timeSeries/R/fin-periodical.R | 7 timeSeries-4021.105/timeSeries/R/methods-as.R | 10 timeSeries-4021.105/timeSeries/R/methods-plot2.R | 2 timeSeries-4021.105/timeSeries/R/statistics-colCumsums.R | 73 +- timeSeries-4021.105/timeSeries/R/statistics-colSums.R | 29 timeSeries-4021.105/timeSeries/R/stats-window.R | 2 timeSeries-4021.105/timeSeries/R/timeSeries-dummy.R | 9 timeSeries-4021.105/timeSeries/R/timeSeries-slotDocumentation.R | 2 timeSeries-4021.105/timeSeries/R/timeSeries-slotSeries.R | 146 +--- timeSeries-4021.105/timeSeries/R/timeSeries-slotTime.R | 94 +- timeSeries-4021.105/timeSeries/README.md |only timeSeries-4021.105/timeSeries/data/USDCHF.rda |binary timeSeries-4021.105/timeSeries/inst/_pkgdown.yml |only timeSeries-4021.105/timeSeries/inst/doc/timeSeriesPlot.pdf |binary timeSeries-4021.105/timeSeries/inst/extdata |only timeSeries-4021.105/timeSeries/inst/extensionsTests/alignWrappers.R | 4 timeSeries-4021.105/timeSeries/inst/extensionsTests/attributesExtension.R | 2 timeSeries-4021.105/timeSeries/inst/unitTests/runit.as.R | 2 timeSeries-4021.105/timeSeries/inst/unitTests/runit.bind.R | 2 timeSeries-4021.105/timeSeries/inst/unitTests/runit.colCum.R | 14 timeSeries-4021.105/timeSeries/inst/unitTests/runit.colStats.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.cor.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.cumulated.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.durations.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.lag.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.mathOps.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.merge.R | 4 timeSeries-4021.105/timeSeries/inst/unitTests/runit.spreads.R | 2 timeSeries-4021.105/timeSeries/inst/unitTests/runit.subset.R | 2 timeSeries-4021.105/timeSeries/man/00timeSeries-package.Rd | 291 ++++---- timeSeries-4021.105/timeSeries/man/base-apply.Rd | 188 +++-- timeSeries-4021.105/timeSeries/man/base-attach.Rd | 18 timeSeries-4021.105/timeSeries/man/base-cbind.Rd | 97 +- timeSeries-4021.105/timeSeries/man/base-diff.Rd | 78 +- timeSeries-4021.105/timeSeries/man/base-dim.Rd | 31 timeSeries-4021.105/timeSeries/man/base-merge.Rd | 97 ++ timeSeries-4021.105/timeSeries/man/base-rank.Rd | 43 - timeSeries-4021.105/timeSeries/man/base-rev.Rd | 15 timeSeries-4021.105/timeSeries/man/base-sample.Rd | 48 + timeSeries-4021.105/timeSeries/man/base-scale.Rd | 29 timeSeries-4021.105/timeSeries/man/base-sort.Rd | 12 timeSeries-4021.105/timeSeries/man/base-start.Rd | 13 timeSeries-4021.105/timeSeries/man/base-subsetting.Rd | 117 +-- timeSeries-4021.105/timeSeries/man/base-t.Rd | 8 timeSeries-4021.105/timeSeries/man/data-examples.Rd | 84 +- timeSeries-4021.105/timeSeries/man/fin-align.Rd | 25 timeSeries-4021.105/timeSeries/man/fin-cumulated.Rd | 12 timeSeries-4021.105/timeSeries/man/fin-daily.Rd | 231 +++--- timeSeries-4021.105/timeSeries/man/fin-drawdowns.Rd | 32 timeSeries-4021.105/timeSeries/man/fin-dummy.Rd |only timeSeries-4021.105/timeSeries/man/fin-durations.Rd | 4 timeSeries-4021.105/timeSeries/man/fin-monthly.Rd | 89 +- timeSeries-4021.105/timeSeries/man/fin-periodical.Rd | 79 +- timeSeries-4021.105/timeSeries/man/fin-returns.Rd | 24 timeSeries-4021.105/timeSeries/man/fin-runlengths.Rd | 8 timeSeries-4021.105/timeSeries/man/fin-splits.Rd | 56 - timeSeries-4021.105/timeSeries/man/fin-spreads.Rd | 8 timeSeries-4021.105/timeSeries/man/fin-turnpoints.Rd | 51 - timeSeries-4021.105/timeSeries/man/methods-as.Rd | 147 ++-- timeSeries-4021.105/timeSeries/man/methods-comment.Rd | 26 timeSeries-4021.105/timeSeries/man/methods-is.Rd | 12 timeSeries-4021.105/timeSeries/man/methods-mathOps.Rd | 118 +-- timeSeries-4021.105/timeSeries/man/methods-plot.Rd | 27 timeSeries-4021.105/timeSeries/man/methods-show.Rd | 63 + timeSeries-4021.105/timeSeries/man/statistics-colSums.Rd | 49 - timeSeries-4021.105/timeSeries/man/statistics-orderColnames.Rd | 39 - timeSeries-4021.105/timeSeries/man/statistics-orderStatistics.Rd | 17 timeSeries-4021.105/timeSeries/man/statistics-rollMean.Rd | 17 timeSeries-4021.105/timeSeries/man/statistics-rowCumsums.Rd | 10 timeSeries-4021.105/timeSeries/man/statistics-smoothLowess.Rd | 14 timeSeries-4021.105/timeSeries/man/stats-aggregate.Rd | 66 + timeSeries-4021.105/timeSeries/man/stats-filter.Rd | 59 + timeSeries-4021.105/timeSeries/man/stats-lag.Rd | 68 + timeSeries-4021.105/timeSeries/man/stats-model.frame.Rd | 6 timeSeries-4021.105/timeSeries/man/stats-na.contiguous.Rd | 16 timeSeries-4021.105/timeSeries/man/stats-na.omit.Rd | 138 ++- timeSeries-4021.105/timeSeries/man/stats-window.Rd | 42 + timeSeries-4021.105/timeSeries/man/timeSeries-class.Rd |only timeSeries-4021.105/timeSeries/man/timeSeries-deprecated.Rd | 33 timeSeries-4021.105/timeSeries/man/timeSeries-isRegular.Rd | 78 +- timeSeries-4021.105/timeSeries/man/timeSeries-isUnivariate.Rd | 32 timeSeries-4021.105/timeSeries/man/timeSeries-readSeries.Rd | 139 ++- timeSeries-4021.105/timeSeries/man/timeSeries-slotDocumentation.Rd | 10 timeSeries-4021.105/timeSeries/man/timeSeries-slotFinCenter.Rd | 40 - timeSeries-4021.105/timeSeries/man/timeSeries-slotSeries.Rd | 44 - timeSeries-4021.105/timeSeries/man/timeSeries-slotTime.Rd | 45 - timeSeries-4021.105/timeSeries/man/timeSeries-slotUnits.Rd | 24 timeSeries-4021.105/timeSeries/man/timeSeries.Rd | 195 ++--- timeSeries-4021.105/timeSeries/man/utils-description.Rd | 7 timeSeries-4021.105/timeSeries/man/utils-structure.Rd | 11 107 files changed, 2518 insertions(+), 2094 deletions(-)
Title: Extract and Tidy Canadian 'Hydrometric' Data
Description: Provides functions to access historical and real-time national 'hydrometric'
data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and
<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
Author: Sam Albers [aut, cre] ,
David Hutchinson [ctb],
Dewey Dunnington [ctb],
Ryan Whaley [ctb],
Province of British Columbia [cph],
Government of Canada [dtc],
Luke Winslow [rev] ,
Laura DeCicco [rev]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between tidyhydat versions 0.5.6 dated 2022-08-20 and 0.5.7 dated 2022-10-15
DESCRIPTION | 9 - MD5 | 105 +++++++------- NAMESPACE | 1 NEWS.md | 7 R/download.R | 163 +++++++++++++--------- R/hy.R | 4 R/hy_monthly_flows.R | 2 R/hy_monthly_levels.R | 2 R/hy_sed_monthly_loads.R | 2 R/hy_sed_monthly_suscon.R | 2 README.md | 49 +++--- data/allstations.rda |binary inst/doc/tidyhydat_an_introduction.Rmd | 35 ++-- inst/doc/tidyhydat_an_introduction.html | 56 +++---- inst/doc/tidyhydat_example_analysis.Rmd | 3 inst/doc/tidyhydat_example_analysis.html | 22 +- inst/doc/tidyhydat_hydat_db.Rmd | 46 ++---- inst/doc/tidyhydat_hydat_db.html | 65 ++++---- inst/test_db/tinyhydat.sqlite3 |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/hy_remote.Rd |only tests/testthat/_snaps |only tests/testthat/test-hy-plot.R | 2 tests/testthat/test-hy-remote.R |only tests/testthat/test-hy_db.R | 4 tests/testthat/test_daily_mean.R | 2 tests/testthat/test_date_check.R | 2 tests/testthat/test_download_realtime.R | 6 tests/testthat/test_hy_annual_instant_peaks.R | 2 tests/testthat/test_hy_annual_stats.R | 2 tests/testthat/test_hy_daily.R | 2 tests/testthat/test_hy_daily_flows.R | 4 tests/testthat/test_hy_daily_levels.R | 2 tests/testthat/test_hy_monthly_flows.R | 4 tests/testthat/test_hy_monthly_levels.R | 2 tests/testthat/test_hy_sed_daily_loads.R | 2 tests/testthat/test_hy_sed_daily_suscon.R | 2 tests/testthat/test_hy_sed_monthly_loads.R | 2 tests/testthat/test_hy_sed_monthly_suscon.R | 2 tests/testthat/test_hy_sed_samples.R | 2 tests/testthat/test_hy_sed_samples_psd.R | 2 tests/testthat/test_hy_stations.R | 6 tests/testthat/test_hy_stn__.R | 13 - tests/testthat/test_hy_stn_regulation.R | 2 tests/testthat/test_realtime_add_local_datetime.R | 2 tests/testthat/test_realtime_network.R | 2 tests/testthat/test_realtime_plot.R | 2 tests/testthat/test_search.R | 6 tests/testthat/test_station_choice.R | 4 tests/testthat/test_utils.R | 14 - vignettes/tidyhydat_an_introduction.Rmd | 35 ++-- vignettes/tidyhydat_example_analysis.Rmd | 3 vignettes/tidyhydat_hydat_db.Rmd | 46 ++---- vignettes/vignette-fig-pcrtile_plt-1.png |binary 55 files changed, 369 insertions(+), 385 deletions(-)
Title: 3D Brain Visualization
Description: A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome', 'Firefox',
'Safari'), and can be inserted into any websites. The 'R-shiny'
support allows the 3D viewer to be dynamically generated from reactive user
inputs. This feature has been fully adopted by 'RAVE'
<https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG' data. Documentation about 'threeBrain' is provided
by <https://dipterix.org/threeBrain/> and several vignettes included
in this package. To cite the package, please check our 'NeuroImage' paper
by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>),
or see 'citation("threeBrain")' for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [aut],
Xiang Zhang [ctb, res],
Brian Metzger [res],
Elizabeth Nesbitt [res],
Meng Li [ths],
Michael Beauchamp [aut, dtc]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between threeBrain versions 0.2.6 dated 2022-08-25 and 0.2.7 dated 2022-10-15
DESCRIPTION | 6 MD5 | 18 NEWS.md | 14 R/aaa.R | 7 R/class_proxy.R | 144 R/loaders.R | 4 R/threejs_brain.R | 2 inst/commands/launch.zip |binary inst/commands/mac.command | 2 inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/main.js |75133 +++++++++++++++++- 10 files changed, 75302 insertions(+), 28 deletions(-)
Title: A Shiny Dashboard Template System
Description: A template system based on 'AdminLTE3'
(<https://adminlte.io/themes/v3/>)
theme. Comes with default theme that can be easily customized.
Developers can upload modified templates on 'Github', and users can
easily download templates with 'RStudio' project wizard.
The key features of the default template include light and dark theme
switcher, resizing graphs, synchronizing inputs across sessions,
new notification system, fancy progress bars, and card-like flip
panels with back sides, as well as various of 'HTML' tool widgets.
Author: Zhengjia Wang [cph, aut, cre] ,
ColorlibHQ [cph] ,
Bootstrap contributors [ctb] ,
Twitter, Inc [cph] ,
Ivan Sagalaev [ctb, cph] ,
Rene Haas [ctb, cph] ,
Zeno Rocha [ctb, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between shidashi versions 0.1.3 dated 2022-08-06 and 0.1.4 dated 2022-10-15
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ R/render.R | 15 +++++++++++++-- man/render.Rd | 7 +++++++ 5 files changed, 33 insertions(+), 9 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
RStudio [cph]
Maintainer: Max Kuhn <max@rstudio.com>
Diff between recipes versions 1.0.1 dated 2022-07-07 and 1.0.2 dated 2022-10-15
DESCRIPTION | 20 +-- MD5 | 170 ++++++++++++++++------------ NAMESPACE | 25 ++++ NEWS.md | 13 +- R/date.R | 12 - R/discretize.R | 5 R/dummy.R | 3 R/extract.R | 1 R/holiday.R | 2 R/integer.R | 2 R/intercept.R | 5 R/nnmf_sparse.R | 2 R/ordinalscore.R | 2 R/poly_bernstein.R |only R/regex.R | 2 R/spline_b.R |only R/spline_convex.R |only R/spline_helpers.R |only R/spline_monotone.R |only R/spline_natural.R |only R/spline_nonnegative.R |only R/tidy.R | 12 + inst/boilerplate.R | 3 inst/doc/Dummies.html | 23 ++- inst/doc/Roles.html | 13 +- inst/doc/Selecting_Variables.html | 15 +- inst/doc/Skipping.html | 13 +- inst/doc/recipes.html | 91 ++++++++------ man/required_pkgs.recipe.Rd | 23 +++ man/roles.Rd | 4 man/step_integer.Rd | 2 man/step_intercept.Rd | 5 man/step_poly_bernstein.Rd |only man/step_ratio.Rd | 3 man/step_spline_b.Rd |only man/step_spline_convex.Rd |only man/step_spline_monotone.Rd |only man/step_spline_natural.Rd |only man/step_spline_nonnegative.Rd |only man/tidy.recipe.Rd | 30 ++++ tests/testthat/_snaps/BoxCox.md | 23 +++ tests/testthat/_snaps/R4.2/selections.md | 4 tests/testthat/_snaps/R4.2/tidy.md |only tests/testthat/_snaps/discretized.md | 79 +++++++++++++ tests/testthat/_snaps/dummies.md | 11 + tests/testthat/_snaps/geodist.md | 18 ++ tests/testthat/_snaps/impute_bag.md | 9 + tests/testthat/_snaps/impute_knn.md | 9 + tests/testthat/_snaps/impute_lower.md | 9 + tests/testthat/_snaps/impute_mean.md | 9 + tests/testthat/_snaps/impute_median.md | 9 + tests/testthat/_snaps/impute_mode.md | 9 + tests/testthat/_snaps/impute_roll.md | 9 + tests/testthat/_snaps/nzv.md | 12 + tests/testthat/_snaps/pls_new.md | 9 + tests/testthat/_snaps/poly_bernstein.md |only tests/testthat/_snaps/rm.md | 4 tests/testthat/_snaps/select.md | 4 tests/testthat/_snaps/selections.md | 4 tests/testthat/_snaps/sparsity.md | 8 + tests/testthat/_snaps/spline_b.md |only tests/testthat/_snaps/spline_convex.md |only tests/testthat/_snaps/spline_monotone.md |only tests/testthat/_snaps/spline_natural.md |only tests/testthat/_snaps/spline_nonnegative.md |only tests/testthat/_snaps/terms-select.md | 2 tests/testthat/_snaps/tidy.md | 32 ++++- tests/testthat/test-time.R | 17 ++ tests/testthat/test_BoxCox.R | 7 + tests/testthat/test_YeoJohnson.R | 2 tests/testthat/test_count.R | 5 tests/testthat/test_date.R | 23 +-- tests/testthat/test_discretized.R | 34 +++++ tests/testthat/test_dummies.R | 15 ++ tests/testthat/test_dummies_extract.R | 24 +-- tests/testthat/test_geodist.R | 16 ++ tests/testthat/test_holiday.R | 34 +++++ tests/testthat/test_impute_bag.R | 7 + tests/testthat/test_impute_knn.R | 6 tests/testthat/test_impute_lower.R | 7 + tests/testthat/test_impute_mean.R | 6 tests/testthat/test_impute_median.R | 6 tests/testthat/test_impute_mode.R | 6 tests/testthat/test_impute_roll.R | 7 - tests/testthat/test_integer.R | 12 - tests/testthat/test_intercept.R | 6 tests/testthat/test_naindicate.R | 8 - tests/testthat/test_nzv.R | 7 + tests/testthat/test_ordinalscore.R | 10 - tests/testthat/test_pls_new.R | 7 + tests/testthat/test_poly_bernstein.R |only tests/testthat/test_regex.R | 2 tests/testthat/test_sparsity.R | 7 + tests/testthat/test_spline_b.R |only tests/testthat/test_spline_convex.R |only tests/testthat/test_spline_monotone.R |only tests/testthat/test_spline_natural.R |only tests/testthat/test_spline_nonnegative.R |only tests/testthat/test_tidy.R | 17 ++ 99 files changed, 838 insertions(+), 234 deletions(-)
Title: Extensible, Parallelizable Implementation of the Random Forest
Algorithm
Description: Scalable implementation of classification and regression forests, as described by Breiman (2001), <DOI:10.1023/A:1010933404324>.
Author: Mark Seligman
Maintainer: Mark Seligman <mseligman@suiji.org>
Diff between Rborist versions 0.3-1 dated 2022-10-09 and 0.3-2 dated 2022-10-15
DESCRIPTION | 9 ++++----- MD5 | 8 ++++---- src/bv.cc | 5 +++++ src/bv.h | 8 ++++---- src/pretree.cc | 2 +- 5 files changed, 18 insertions(+), 14 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Astronomical calculations related solar angles and
day length. Colours and vision. This package is part of the 'r4photobiology'
suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.10.13 dated 2022-10-05 and 0.10.14 dated 2022-10-15
DESCRIPTION | 8 MD5 | 39 ++- NAMESPACE | 4 NEWS.md | 9 R/ciexyz.data.r | 12 - R/spct.classes.r | 297 +++++++++++++++-------------- R/spct.illuminance.r |only R/spct.integrate.r | 14 - R/spct.metadata.r | 2 README.md | 4 inst/doc/userguide-0-r4p-introduction.html | 2 inst/doc/userguide-1-radiation.R | 9 inst/doc/userguide-1-radiation.Rmd | 44 ++++ inst/doc/userguide-1-radiation.html | 89 +++++++- inst/doc/userguide-2-astronomy.html | 46 ++-- man/check_and_rename_vars.Rd |only man/ciev10.spct.Rd | 84 ++++---- man/ciev2.spct.Rd | 86 ++++---- man/cone_fundamentals10.spct.Rd | 113 +++++------ man/extract.Rd | 198 +++++++++---------- man/illuminance.Rd |only vignettes/userguide-1-radiation.Rmd | 44 ++++ 22 files changed, 645 insertions(+), 459 deletions(-)
Title: Classes and Methods for Seismic Data Analysis
Description: Provides classes and methods for seismic data analysis. The
base classes and methods are inspired by the python code found in
the 'ObsPy' python toolbox <https://github.com/obspy/obspy>. Additional classes and
methods support data returned by web services provided by the 'IRIS DMC'
<http://service.iris.edu/>.
Author: Jonathan Callahan [aut],
Rob Casey [aut],
Gillian Sharer [aut, cre],
Mary Templeton [aut],
Chad Trabant [ctb]
Maintainer: Gillian Sharer <gillian@iris.washington.edu>
Diff between IRISSeismic versions 1.6.5 dated 2022-04-10 and 1.6.6 dated 2022-10-15
DESCRIPTION | 6 - MD5 | 14 +-- R/Class-IrisClient.R | 8 +- build/vignette.rds |binary inst/doc/IRISSeismic-intro.html | 148 ++++++++++++++++++++++------------------ man/IRISSeismic-package.Rd | 6 + man/STALTA.Rd | 2 man/crossSpectrum.Rd | 4 - 8 files changed, 111 insertions(+), 77 deletions(-)
Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.5.0 dated 2022-08-12 and 0.5.1 dated 2022-10-15
ggpmisc-0.5.0/ggpmisc/R/scale-colour-outcome.R |only ggpmisc-0.5.0/ggpmisc/R/scale-continuous-logFC.R |only ggpmisc-0.5.1/ggpmisc/DESCRIPTION | 10 ggpmisc-0.5.1/ggpmisc/MD5 | 100 - ggpmisc-0.5.1/ggpmisc/NAMESPACE | 137 - ggpmisc-0.5.1/ggpmisc/NEWS.md | 13 ggpmisc-0.5.1/ggpmisc/R/scale-colour-outcome.r |only ggpmisc-0.5.1/ggpmisc/R/scale-continuous-logFC.r |only ggpmisc-0.5.1/ggpmisc/R/stat-correlation.R | 76 ggpmisc-0.5.1/ggpmisc/R/stat-fit-broom-tb.R | 87 ggpmisc-0.5.1/ggpmisc/R/stat-fit-broom.R | 151 - ggpmisc-0.5.1/ggpmisc/R/stat-fit-deviations.R | 26 ggpmisc-0.5.1/ggpmisc/R/stat-fit-residuals.R | 26 ggpmisc-0.5.1/ggpmisc/R/stat-ma-eq.R | 86 ggpmisc-0.5.1/ggpmisc/R/stat-ma-line.R | 17 ggpmisc-0.5.1/ggpmisc/R/stat-peaks.R | 48 ggpmisc-0.5.1/ggpmisc/R/stat-poly-eq.R | 42 ggpmisc-0.5.1/ggpmisc/R/stat-poly-line.R | 18 ggpmisc-0.5.1/ggpmisc/R/stat-quant-band.r | 35 ggpmisc-0.5.1/ggpmisc/R/stat-quant-eq.R | 79 ggpmisc-0.5.1/ggpmisc/R/stat-quant-line.r | 55 ggpmisc-0.5.1/ggpmisc/R/utilities.R | 46 ggpmisc-0.5.1/ggpmisc/README.md | 31 ggpmisc-0.5.1/ggpmisc/build/vignette.rds |binary ggpmisc-0.5.1/ggpmisc/inst/doc/model-based-annotations.R | 117 - ggpmisc-0.5.1/ggpmisc/inst/doc/model-based-annotations.Rmd | 249 +- ggpmisc-0.5.1/ggpmisc/inst/doc/model-based-annotations.html | 911 +++++---- ggpmisc-0.5.1/ggpmisc/man/FC_format.Rd | 106 - ggpmisc-0.5.1/ggpmisc/man/FC_name.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/fail_safe_formula.Rd |only ggpmisc-0.5.1/ggpmisc/man/figures/README-unnamed-chunk-1-1.png |binary ggpmisc-0.5.1/ggpmisc/man/outcome2factor.Rd | 129 - ggpmisc-0.5.1/ggpmisc/man/scale_colour_logFC.Rd |only ggpmisc-0.5.1/ggpmisc/man/scale_colour_outcome.Rd | 225 +- ggpmisc-0.5.1/ggpmisc/man/scale_shape_outcome.Rd | 177 - ggpmisc-0.5.1/ggpmisc/man/scale_x_logFC.Rd | 310 +-- ggpmisc-0.5.1/ggpmisc/man/stat_correlation.Rd | 613 +++--- ggpmisc-0.5.1/ggpmisc/man/stat_fit_augment.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/stat_fit_deviations.Rd | 13 ggpmisc-0.5.1/ggpmisc/man/stat_fit_glance.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/stat_fit_residuals.Rd | 9 ggpmisc-0.5.1/ggpmisc/man/stat_fit_tb.Rd | 741 ++++--- ggpmisc-0.5.1/ggpmisc/man/stat_fit_tidy.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/stat_ma_eq.Rd | 18 ggpmisc-0.5.1/ggpmisc/man/stat_ma_line.Rd | 458 ++-- ggpmisc-0.5.1/ggpmisc/man/stat_peaks.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/stat_poly_eq.Rd | 930 +++++----- ggpmisc-0.5.1/ggpmisc/man/stat_poly_line.Rd | 379 ++-- ggpmisc-0.5.1/ggpmisc/man/stat_quant_band.Rd | 390 ++-- ggpmisc-0.5.1/ggpmisc/man/stat_quant_eq.Rd | 21 ggpmisc-0.5.1/ggpmisc/man/stat_quant_line.Rd | 10 ggpmisc-0.5.1/ggpmisc/man/symmetric_limits.Rd | 2 ggpmisc-0.5.1/ggpmisc/man/xy_outcomes2factor.Rd | 111 - ggpmisc-0.5.1/ggpmisc/vignettes/model-based-annotations.Rmd | 249 +- 54 files changed, 3915 insertions(+), 3346 deletions(-)
Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics
and geometries echoing their data argument. Layer manipulation: deletion,
insertion, extraction and reordering of layers. Deletion of unused variables
from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between gginnards versions 0.1.0-1 dated 2021-07-30 and 0.1.1 dated 2022-10-15
DESCRIPTION | 10 MD5 | 40 - NEWS.md | 17 R/geom-debug.R | 172 ++++++- R/stat-debug-group.R | 112 +++- R/stat-debug-panel.R | 130 ++++- README.md | 41 + build/vignette.rds |binary inst/doc/user-guide-1.R | 11 inst/doc/user-guide-1.Rmd | 35 - inst/doc/user-guide-1.html | 713 ++++++++++++++++++++----------- inst/doc/user-guide-2.html | 550 +++++++++++++++++++---- man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-6-2.png |binary man/geom_debug.Rd | 68 ++ man/gginnards-package.Rd | 143 +++--- man/stat_debug_group.Rd | 68 ++ man/stat_debug_panel.Rd | 70 ++- vignettes/user-guide-1.Rmd | 35 - 21 files changed, 1577 insertions(+), 638 deletions(-)
Title: Highlight Lines and Points in 'ggplot2'
Description: Make it easier to explore data with highlights.
Author: Hiroaki Yutani [aut, cre]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between gghighlight versions 0.3.3 dated 2022-06-06 and 0.4.0 dated 2022-10-15
DESCRIPTION | 16 MD5 | 38 - NEWS.md | 10 R/gghighlight.R | 69 ++- R/label.R | 115 ++++- README.md | 1 build/gghighlight.pdf |binary build/vignette.rds |binary inst/doc/gghighlight.R | 25 + inst/doc/gghighlight.Rmd | 46 ++ inst/doc/gghighlight.html | 80 +++ man/gghighlight.Rd | 15 tests/testthat/_snaps/vdiffr/simple-bar-chart-with-facet.svg | 190 ++++----- tests/testthat/_snaps/vdiffr/simple-bar-chart.svg | 48 +- tests/testthat/_snaps/vdiffr/simple-line-chart.svg | 124 ++--- tests/testthat/_snaps/vdiffr/simple-point-chart.svg | 232 +++++------ tests/testthat/test-bleach.R | 4 tests/testthat/test-label.R | 26 - tests/testthat/test-sieve.R | 2 vignettes/gghighlight.Rmd | 46 ++ 20 files changed, 701 insertions(+), 386 deletions(-)
Title: Set Axis Break for 'ggplot2'
Description: An implementation of scale functions for setting axis breaks of a 'gg' plot.
Author: Guangchuang Yu [aut, cre, cph]
,
Shuangbin Xu [aut]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between ggbreak versions 0.1.0 dated 2022-06-01 and 0.1.1 dated 2022-10-15
DESCRIPTION | 11 +++--- MD5 | 14 ++++---- NEWS.md | 4 ++ build/vignette.rds |binary inst/doc/ggbreak.R | 17 ++++++++++ inst/doc/ggbreak.Rmd | 23 +++++++++++++ inst/doc/ggbreak.html | 85 +++++++++++++++++++++++++++++++------------------- vignettes/ggbreak.Rmd | 23 +++++++++++++ 8 files changed, 133 insertions(+), 44 deletions(-)
Title: Implementing Methods for Spatial Fuzzy Unsupervised
Classification
Description: Provides functions to apply spatial fuzzy unsupervised classification, visualize and interpret results. This method is well suited when the user wants to analyze data with a fuzzy clustering algorithm and to account for the spatial dimension of the dataset. In addition, indexes for estimating the spatial consistency and classification quality are proposed.
The methods were originally proposed in the field of brain imagery (seed Cai and al. 2007 <doi:10.1016/j.patcog.2006.07.011> and Zaho and al. 2013 <doi:10.1016/j.dsp.2012.09.016>) and recently applied in geography (see Gelb and Apparicio <doi:10.4000/cybergeo.36414>).
Author: Jeremy Gelb [aut, cre],
Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>
Diff between geocmeans versions 0.2.2 dated 2022-06-16 and 0.3.1 dated 2022-10-15
geocmeans-0.2.2/geocmeans/man/force_sp_sample.Rd |only geocmeans-0.2.2/geocmeans/man/mapLines.Rd |only geocmeans-0.2.2/geocmeans/man/mapPoints.Rd |only geocmeans-0.2.2/geocmeans/man/mapPolygons.Rd |only geocmeans-0.3.1/geocmeans/DESCRIPTION | 31 geocmeans-0.3.1/geocmeans/MD5 | 145 +-- geocmeans-0.3.1/geocmeans/NAMESPACE | 6 geocmeans-0.3.1/geocmeans/NEWS.md | 4 geocmeans-0.3.1/geocmeans/R/FCM.R | 4 geocmeans-0.3.1/geocmeans/R/FCMclass.R | 24 geocmeans-0.3.1/geocmeans/R/GFCM.R | 4 geocmeans-0.3.1/geocmeans/R/boostrap_clust_validation.R | 6 geocmeans-0.3.1/geocmeans/R/clustering_evaluation.R | 20 geocmeans-0.3.1/geocmeans/R/shinyapp.R | 33 geocmeans-0.3.1/geocmeans/R/side_functions.R | 426 +++------- geocmeans-0.3.1/geocmeans/R/spatial_indices.R | 6 geocmeans-0.3.1/geocmeans/R/uncertainty.R | 4 geocmeans-0.3.1/geocmeans/README.md | 9 geocmeans-0.3.1/geocmeans/build/partial.rdb |binary geocmeans-0.3.1/geocmeans/data/LyonIris.rda |binary geocmeans-0.3.1/geocmeans/inst/doc/FCMres.R | 5 geocmeans-0.3.1/geocmeans/inst/doc/FCMres.Rmd | 5 geocmeans-0.3.1/geocmeans/inst/doc/FCMres.html | 47 - geocmeans-0.3.1/geocmeans/inst/doc/adjustinconsistency.R | 4 geocmeans-0.3.1/geocmeans/inst/doc/adjustinconsistency.Rmd | 4 geocmeans-0.3.1/geocmeans/inst/doc/adjustinconsistency.html | 4 geocmeans-0.3.1/geocmeans/inst/doc/introduction.R | 110 +- geocmeans-0.3.1/geocmeans/inst/doc/introduction.Rmd | 106 +- geocmeans-0.3.1/geocmeans/inst/doc/introduction.html | 410 ++++----- geocmeans-0.3.1/geocmeans/inst/doc/rasters.html | 8 geocmeans-0.3.1/geocmeans/inst/extdata/results_vignette_intro.rda |binary geocmeans-0.3.1/geocmeans/inst/extdata/results_vignette_raster.rda |binary geocmeans-0.3.1/geocmeans/man/CMeans.Rd | 2 geocmeans-0.3.1/geocmeans/man/GCMeans.Rd | 2 geocmeans-0.3.1/geocmeans/man/SFCMeans.Rd | 2 geocmeans-0.3.1/geocmeans/man/SGFCMeans.Rd | 2 geocmeans-0.3.1/geocmeans/man/adjustSpatialWeights.Rd | 2 geocmeans-0.3.1/geocmeans/man/barPlots.Rd | 2 geocmeans-0.3.1/geocmeans/man/boot_group_validation.Rd | 2 geocmeans-0.3.1/geocmeans/man/boot_group_validation.mc.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcCalinskiHarabasz.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcDaviesBouldin.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcELSA.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcFukuyamaSugeno.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcFuzzyELSA.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcGD43.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcGD53.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcNegentropyI.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcUncertaintyIndex.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcexplainedInertia.Rd | 2 geocmeans-0.3.1/geocmeans/man/calcqualityIndexes.Rd | 2 geocmeans-0.3.1/geocmeans/man/groups_matching.Rd | 2 geocmeans-0.3.1/geocmeans/man/is.FCMres.Rd | 2 geocmeans-0.3.1/geocmeans/man/mapClusters.Rd | 11 geocmeans-0.3.1/geocmeans/man/mapThis.Rd |only geocmeans-0.3.1/geocmeans/man/plot.FCMres.Rd | 4 geocmeans-0.3.1/geocmeans/man/predict.FCMres.Rd | 6 geocmeans-0.3.1/geocmeans/man/predict_membership.Rd | 6 geocmeans-0.3.1/geocmeans/man/print.FCMres.Rd | 2 geocmeans-0.3.1/geocmeans/man/select_parameters.Rd | 4 geocmeans-0.3.1/geocmeans/man/select_parameters.mc.Rd | 4 geocmeans-0.3.1/geocmeans/man/spConsistency.Rd | 2 geocmeans-0.3.1/geocmeans/man/sp_clust_explorer.Rd | 5 geocmeans-0.3.1/geocmeans/man/spatialDiag.Rd | 2 geocmeans-0.3.1/geocmeans/man/spiderPlots.Rd | 2 geocmeans-0.3.1/geocmeans/man/summarizeClusters.Rd | 2 geocmeans-0.3.1/geocmeans/man/summary.FCMres.Rd | 2 geocmeans-0.3.1/geocmeans/man/uncertaintyMap.Rd | 7 geocmeans-0.3.1/geocmeans/man/undecidedUnits.Rd | 2 geocmeans-0.3.1/geocmeans/man/violinPlots.Rd | 2 geocmeans-0.3.1/geocmeans/tests/testthat/test_FCMresclass.R | 2 geocmeans-0.3.1/geocmeans/tests/testthat/test_belongingmatrices.R | 8 geocmeans-0.3.1/geocmeans/tests/testthat/test_parameter_evaluation.R | 4 geocmeans-0.3.1/geocmeans/vignettes/FCMres.Rmd | 5 geocmeans-0.3.1/geocmeans/vignettes/adjustinconsistency.Rmd | 4 geocmeans-0.3.1/geocmeans/vignettes/introduction.Rmd | 106 +- 76 files changed, 748 insertions(+), 911 deletions(-)
Title: Data Sets for Econometrics
Description: Data sets for econometrics, including political science.
Author: Yves Croissant <yves.croissant@let.ish-lyon.cnrs.fr> and Spencer Graves
Maintainer: Spencer Graves <spencer.graves@effectivedefense.org>
Diff between Ecdat versions 0.4-1 dated 2022-07-05 and 0.4-2 dated 2022-10-15
Ecdat-0.4-1/Ecdat/NEWS |only Ecdat-0.4-2/Ecdat/DESCRIPTION | 8 +-- Ecdat-0.4-2/Ecdat/MD5 | 18 +++---- Ecdat-0.4-2/Ecdat/NEWS.md |only Ecdat-0.4-2/Ecdat/data/incidents.byCountryYr.rda |binary Ecdat-0.4-2/Ecdat/data/nkill.byCountryYr.rda |binary Ecdat-0.4-2/Ecdat/data/terrorism.rda |binary Ecdat-0.4-2/Ecdat/inst/WORDLIST | 15 ++++++ Ecdat-0.4-2/Ecdat/man/USGDPpresidents.Rd | 2 Ecdat-0.4-2/Ecdat/man/nuclearWeaponStates.Rd | 20 ++++---- Ecdat-0.4-2/Ecdat/man/terrorism.Rd | 57 +++++++---------------- 11 files changed, 58 insertions(+), 62 deletions(-)
Title: Easily Save Output and Trace it Back to Code
Description: Simple but crucial functionality related to creation of reproducible and traceable output (plots) back to code. It has a graphics saver with simple automation of plot stamping with source, destination and creation time, a selection of dimensions for use in presentations. A list of plots can be saved at once.
Author: Philip Delff [aut, cre]
Maintainer: Philip Delff <philip@delff.dk>
Diff between tracee versions 0.0.1 dated 2022-05-30 and 0.0.2 dated 2022-10-15
DESCRIPTION | 10 ++++---- MD5 | 33 +++++++++++++++++++++++------ NAMESPACE | 3 ++ NEWS.md |only R/createStamp.R |only R/fnExtensionTracee.R |only R/ggstamp.R | 22 +++++++++++++------ R/ggwrite.R | 13 ++++++----- R/stampFlextab.R |only R/writeFlextab.R |only man/createStamp.Rd |only man/fnExtensionTracee.Rd |only man/stampFlextab.Rd |only man/writeFlextab.Rd |only tests/testthat/testOutput |only tests/testthat/testReference/flextab1.png |only tests/testthat/testReference/flextab2.docx |only tests/testthat/testReference/flextab2.html |only tests/testthat/testReference/flextab2.png |only tests/testthat/testReference/flextab2.pptx |only tests/testthat/testReference/ggstamp1.rds |binary tests/testthat/testReference/ggstamp2.rds |only tests/testthat/test_ggstamp.R | 12 ++++++++++ tests/testthat/test_writeFlextab.R |only 24 files changed, 69 insertions(+), 24 deletions(-)
Title: Dashboard System for Reproducible Visualization of 'iEEG'
Description: Dashboard system to display the analysis results produced by 'RAVE'
(Magnotti J.F., Wang Z., Beauchamp M.S. (2020), R analysis
and visualizations of 'iEEG' <doi:10.1016/j.neuroimage.2020.117341>).
Provides infrastructure to integrate customized analysis pipelines into
dashboard modules, including file structures, front-end widgets, and
event handlers.
Author: Zhengjia Wang [aut, cre, cph]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between ravedash versions 0.1.1 dated 2022-06-23 and 0.1.2 dated 2022-10-15
DESCRIPTION | 19 - MD5 | 77 ++++--- NAMESPACE | 19 + NEWS.md | 18 + R/core-app.R | 408 +++++++++++++++++++++++++++++++++++++- R/eval-safe.R | 162 +++++++++++++++ R/logger.R | 50 ++++ R/output-widgets.R |only R/preset-aaa.R | 7 R/preset-analysis-electrode.R | 212 +++++++++++++++---- R/preset-analysis-range.R | 8 R/preset-baseline-choices.R | 6 R/preset-condition-groups.R | 28 +- R/preset-import-export-pipeline.R | 10 R/preset-import-setup-blocks.R | 16 + R/preset-import-setup-channels.R | 72 ++++++ R/preset-loader-3dviewer.R | 228 +++++++++++++++++++-- R/preset-loader-project.R | 2 R/preset-loader-subject.R | 35 +++ R/preset-sync-settings.R |only R/server-common.R | 317 ++++++++++++++++++++++------- R/shiny-outputs.R |only R/shiny-rave-comps.R | 5 R/shiny-utils.R | 177 +++++++++++++--- build/vignette.rds |binary inst/WORDLIST | 3 inst/assets |only inst/doc/start.html | 13 - man/get_active_module_info.Rd |only man/logger.Rd | 24 ++ man/output_gadget.Rd |only man/rave-runtime-events.Rd | 8 man/rave-session.Rd | 75 ++++++ man/rave-ui-preset.Rd | 55 ++++- man/ravedash_footer.Rd | 8 man/register_output.Rd |only man/run_analysis_button.Rd | 7 man/standalone_viewer.Rd |only man/temp_file.Rd |only 39 files changed, 1812 insertions(+), 257 deletions(-)
Title: Read Spectral and Logged Data from Foreign Files
Description: Functions for reading, and in some cases writing, foreign files
containing spectral data from spectrometers and their associated software,
output from daylight simulation models in common use, and some spectral
data repositories. As well as functions for exchange of spectral data with
other R packages. Part of the 'r4photobiology' suite,
Aphalo P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiologyInOut versions 0.4.25 dated 2022-08-15 and 0.4.26 dated 2022-10-15
DESCRIPTION | 10 MD5 | 22 NAMESPACE | 1 NEWS.md | 5 R/read-fmi-cum.R | 2 R/read-psi-spectrapen-csv.r |only R/read-tuv-file.r | 16 inst/doc/user-guide.R | 13 inst/doc/user-guide.Rmd | 50 + inst/doc/user-guide.html | 751 +++++++++++++++------------- inst/extdata/spectrum-psi-spectrapen-SP.csv |only man/read_spectrapen_csv.Rd |only tests/testthat/test-psi.R |only vignettes/user-guide.Rmd | 50 + 14 files changed, 549 insertions(+), 371 deletions(-)
More information about photobiologyInOut at CRAN
Permanent link
Title: Flexible Time-to-Event Figures
Description: Ease the creation of time-to-event (i.e. survival) endpoint
figures. The modular functions create figures ready for publication.
Each of the functions that add to or modify the figure are written as
proper 'ggplot2' geoms or stat methods, allowing the functions from
this package to be combined with any function or customization from
'ggplot2' and other 'ggplot2' extension packages.
Author: Daniel D. Sjoberg [aut, cre, cph]
,
Mark Baillie [aut],
Steven Haesendonckx [aut] ,
Tim Treis [aut]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between ggsurvfit versions 0.1.0 dated 2022-08-27 and 0.2.0 dated 2022-10-15
ggsurvfit-0.1.0/ggsurvfit/inst/doc/gallery.R |only ggsurvfit-0.1.0/ggsurvfit/inst/doc/gallery.Rmd |only ggsurvfit-0.1.0/ggsurvfit/inst/doc/gallery.html |only ggsurvfit-0.1.0/ggsurvfit/vignettes/gallery.Rmd |only ggsurvfit-0.2.0/ggsurvfit/DESCRIPTION | 39 ggsurvfit-0.2.0/ggsurvfit/MD5 | 294 +- ggsurvfit-0.2.0/ggsurvfit/NAMESPACE | 12 ggsurvfit-0.2.0/ggsurvfit/NEWS.md | 38 ggsurvfit-0.2.0/ggsurvfit/R/add_legend_title.R |only ggsurvfit-0.2.0/ggsurvfit/R/add_pvalue.R |only ggsurvfit-0.2.0/ggsurvfit/R/add_quantile.R | 121 - ggsurvfit-0.2.0/ggsurvfit/R/add_risktable.R | 221 - ggsurvfit-0.2.0/ggsurvfit/R/add_risktable_strata_symbol.R | 33 ggsurvfit-0.2.0/ggsurvfit/R/ggcuminc.R | 142 - ggsurvfit-0.2.0/ggsurvfit/R/ggsurvfit.R | 437 ++- ggsurvfit-0.2.0/ggsurvfit/R/ggsurvfit_build.R | 133 - ggsurvfit-0.2.0/ggsurvfit/R/grid.draw_ggsurvfit.R |only ggsurvfit-0.2.0/ggsurvfit/R/print.R | 9 ggsurvfit-0.2.0/ggsurvfit/R/reexport.R | 39 ggsurvfit-0.2.0/ggsurvfit/R/scale_ggsurvfit.R |only ggsurvfit-0.2.0/ggsurvfit/R/stat_stepribbon.R | 154 - ggsurvfit-0.2.0/ggsurvfit/R/survfit2.R | 63 ggsurvfit-0.2.0/ggsurvfit/R/survfit2_p.R | 108 ggsurvfit-0.2.0/ggsurvfit/R/theme_ggsurvfit.R | 7 ggsurvfit-0.2.0/ggsurvfit/R/theme_risktable.R | 120 - ggsurvfit-0.2.0/ggsurvfit/R/tidy_cuminc.R | 2 ggsurvfit-0.2.0/ggsurvfit/R/tidy_survfit.R | 639 ++--- ggsurvfit-0.2.0/ggsurvfit/R/utils-add_risktable.R | 72 ggsurvfit-0.2.0/ggsurvfit/R/utils.R | 5 ggsurvfit-0.2.0/ggsurvfit/R/zzz.R |only ggsurvfit-0.2.0/ggsurvfit/README.md | 62 ggsurvfit-0.2.0/ggsurvfit/build/partial.rdb |only ggsurvfit-0.2.0/ggsurvfit/build/vignette.rds |binary ggsurvfit-0.2.0/ggsurvfit/data/ADTTE.rda |binary ggsurvfit-0.2.0/ggsurvfit/inst/WORDLIST | 5 ggsurvfit-0.2.0/ggsurvfit/inst/doc/themes.R | 1 ggsurvfit-0.2.0/ggsurvfit/inst/doc/themes.Rmd | 197 - ggsurvfit-0.2.0/ggsurvfit/inst/doc/themes.html | 18 ggsurvfit-0.2.0/ggsurvfit/man/add_legend_title.Rd |only ggsurvfit-0.2.0/ggsurvfit/man/add_pvalue.Rd |only ggsurvfit-0.2.0/ggsurvfit/man/add_quantile.Rd | 9 ggsurvfit-0.2.0/ggsurvfit/man/add_risktable.Rd | 8 ggsurvfit-0.2.0/ggsurvfit/man/add_risktable_strata_symbol.Rd | 4 ggsurvfit-0.2.0/ggsurvfit/man/figures/README-gt-related-pkgs.png |only ggsurvfit-0.2.0/ggsurvfit/man/figures/README-unnamed-chunk-2-1.png |only ggsurvfit-0.2.0/ggsurvfit/man/figures/logo.png |only ggsurvfit-0.2.0/ggsurvfit/man/ggcuminc.Rd | 24 ggsurvfit-0.2.0/ggsurvfit/man/ggsurvfit-package.Rd | 6 ggsurvfit-0.2.0/ggsurvfit/man/ggsurvfit.Rd | 4 ggsurvfit-0.2.0/ggsurvfit/man/ggsurvfit_build.Rd | 23 ggsurvfit-0.2.0/ggsurvfit/man/grid.draw_ggsurvfit.Rd |only ggsurvfit-0.2.0/ggsurvfit/man/print_ggsurvfit.Rd | 2 ggsurvfit-0.2.0/ggsurvfit/man/reexports.Rd | 50 ggsurvfit-0.2.0/ggsurvfit/man/scale_ggsurvfit.Rd |only ggsurvfit-0.2.0/ggsurvfit/man/stepribbon.Rd | 186 - 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162 files changed, 12211 insertions(+), 14369 deletions(-)
More information about fwildclusterboot at CRAN
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Title: Classify RGB Images into Forest or Non-Forest
Description: Implements two out-of box classifiers presented in <doi:10.48550/arXiv.2112.01063> for
distinguishing forest and non-forest terrain images. Under these algorithms, there are
frequentist approaches: one parametric, using stable distributions, and another one-
non-parametric, using the squared Mahalanobis distance. The package also contains functions for
data handling and building of new classifiers as well as some test data set.
Author: Jesper Muren [aut] ,
Dmitry Otryakhin [aut, cre]
Maintainer: Dmitry Otryakhin <d.otryakhin.acad@protonmail.ch>
Diff between deforestable versions 3.1.0 dated 2022-10-10 and 3.1.1 dated 2022-10-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/param_adds.cpp | 9 ++++----- 3 files changed, 9 insertions(+), 10 deletions(-)
Title: Dose-Finding Methods for Non-Binary Outcomes
Description: In many phase I trials, the design goal is to find the dose associated with a certain target toxicity rate. In some trials, the goal can be to find the dose with a certain weighted sum of rates of various toxicity grades. For others, the goal is to find the dose with a certain mean value of a continuous response. This package provides the setup and calculations needed to run a dose-finding trial with non-binary endpoints and performs simulations to assess design’s operating characteristics under various scenarios. Three dose finding designs are included in this package: unified phase I design (Ivanova et al. (2009) <doi:10.1111/j.1541-0420.2008.01045.x>), Quasi-CRM/Robust-Quasi-CRM (Yuan et al. (2007) <doi:10.1111/j.1541-0420.2006.00666.x>, Pan et al. (2014) <doi:10.1371/journal.pone.0098147>) and generalized BOIN design (Mu et al. (2018) <doi:10.1111/rssc.12263>). The toxicity endpoints can be handled with these functions including equivalent toxicity score (ET [...truncated...]
Author: Chia-Wei Hsu, Haitao Pan, Rongji Mu
Maintainer: Chia-Wei Hsu <Chia-Wei.Hsu@stjude.org>
Diff between UnifiedDoseFinding versions 0.1.9 dated 2022-02-03 and 0.1.10 dated 2022-10-15
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/nonpart_continuous.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
More information about UnifiedDoseFinding at CRAN
Permanent link
Title: Automated Grading of R Scripts
Description: Tools for grading the coding style and documentation of R
scripts. This is the R component of Roger the Omni Grader, an
automated grading system for computer programming projects based on
Unix shell scripts; see <https://gitlab.com/roger-project>. The
package also provides an R interface to the shell scripts. Inspired by
the lintr package.
Author: Vincent Goulet [aut, cre],
Samuel Frechette [aut],
Jean-Christophe Langlois [aut],
Jim Hester [ctb]
Maintainer: Vincent Goulet <vincent.goulet@act.ulaval.ca>
Diff between roger versions 1.1-0 dated 2022-09-26 and 1.2-0 dated 2022-10-15
DESCRIPTION | 8 MD5 | 24 +- NAMESPACE | 14 - R/comments_style.R |only R/documentation.R | 10 inst/NEWS.Rd | 23 ++ inst/po/en@quot/LC_MESSAGES/R-roger.mo |binary inst/po/fr/LC_MESSAGES/R-roger.mo |binary man/comments_style.Rd |only man/documentation.Rd | 13 - po/R-fr.po | 13 - po/R-roger.pot | 16 - tests/documentation-tests.R | 47 ++-- tests/style-tests.R | 355 ++++++++++++++++++++------------- 14 files changed, 327 insertions(+), 196 deletions(-)
Title: Bindings to 'OpenCV' Computer Vision Library
Description: Exposes some of the available 'OpenCV' <https://opencv.org/> algorithms,
such as edge, body or face detection. These can either be applied to analyze
static images, or to filter live video footage from a camera device.
Author: Jeroen Ooms [aut, cre] ,
Jan Wijffels [aut]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between opencv versions 0.2.2 dated 2022-04-28 and 0.2.3 dated 2022-10-15
DESCRIPTION | 11 +++++------ LICENSE | 2 +- MD5 | 9 +++++---- NEWS | 3 +++ configure | 29 ++++++++++++++++++----------- man/figures |only 6 files changed, 32 insertions(+), 22 deletions(-)
Title: Graphical Interaction Models
Description: Provides the following types of models: Models for contingency
tables (i.e. log-linear models) Graphical Gaussian models for multivariate
normal data (i.e. covariance selection models) Mixed interaction models.
Documentation about 'gRim' is provided by vignettes included in this
package and the book by Højsgaard, Edwards and Lauritzen (2012,
<doi:10.1007/978-1-4614-2299-0>); see 'citation("gRim")' for details.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between gRim versions 0.2.9 dated 2022-05-12 and 0.2.10 dated 2022-10-15
gRim-0.2.10/gRim/DESCRIPTION | 8 gRim-0.2.10/gRim/MD5 | 37 +-- gRim-0.2.10/gRim/NEWS | 26 +- gRim-0.2.10/gRim/R/citest-generic.R | 36 +- gRim-0.2.10/gRim/R/citest-mvn.R | 148 ++++++------ gRim-0.2.10/gRim/R/getEdges.R | 8 gRim-0.2.10/gRim/build/vignette.rds |binary gRim-0.2.10/gRim/inst/doc/grim.pdf |binary gRim-0.2.10/gRim/man/citest-df.Rd | 22 - gRim-0.2.10/gRim/man/citest-generic.Rd | 10 gRim-0.2.10/gRim/man/citest-mvn.Rd | 48 ++- gRim-0.2.10/gRim/src/_utils_mat.c | 2 gRim-0.2.10/gRim/src/_utils_mat.h | 2 gRim-0.2.10/gRim/vignettes/figures/GRIM-011.pdf |binary gRim-0.2.10/gRim/vignettes/figures/GRIM-013.pdf |binary gRim-0.2.10/gRim/vignettes/figures/GRIM-015.pdf |binary gRim-0.2.10/gRim/vignettes/figures/GRIM-034.pdf |binary gRim-0.2.10/gRim/vignettes/figures/GRIM-035.pdf |binary gRim-0.2.10/gRim/vignettes/figures/GRIM-fundamentalfig1.pdf |binary gRim-0.2.9/gRim/man/gRim-internal.Rd |only 20 files changed, 184 insertions(+), 163 deletions(-)
Title: Google Analytics API into R
Description: Interact with the Google Analytics
APIs <https://developers.google.com/analytics/>, including
the Core Reporting API (v3 and v4), Management API, User Activity API
GA4's Data API and Admin API and Multi-Channel Funnel API.
Author: Mark Edmondson [aut, cre] ,
Artem Klevtsov [ctb],
Johann deBoer [ctb],
David Watkins [ctb],
Olivia Brode-Roger [ctb],
Jas Sohi [ctb],
Zoran Selinger [ctb],
Octavian Corlade [ctb],
Maegan Whytock [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAnalyticsR versions 1.0.1 dated 2021-10-07 and 1.1.0 dated 2022-10-15
DESCRIPTION | 8 ++++---- MD5 | 30 +++++++++++++++--------------- NEWS.md | 3 ++- R/analytics_admin.R | 5 ++++- R/app_web_functions.R | 14 ++++++++------ R/ga_data.R | 16 ++++++++++++---- R/ga_v3_get.R | 2 +- R/shiny-modules-segments.R | 2 +- R/utilities.R | 2 +- README.md | 2 +- inst/_pkgdown.yml | 2 +- man/dim_filter.Rd | 4 ++-- man/ga_data.Rd | 11 +++++++++-- man/ga_model_make.Rd | 4 +++- man/ga_mp_send.Rd | 6 ++++-- man/google_analytics_3.Rd | 2 +- 16 files changed, 69 insertions(+), 44 deletions(-)
More information about googleAnalyticsR at CRAN
Permanent link
Title: End-to-End Automated Machine Learning and Model Evaluation
Description: Single unified interface for end-to-end modelling of regression,
categorical and time-to-event (survival) outcomes. Models created using
familiar are self-containing, and their use does not require additional
information such as baseline survival, feature clustering, or feature
transformation and normalisation parameters. Model performance,
calibration, risk group stratification, (permutation) variable importance,
individual conditional expectation, partial dependence, and more, are
assessed automatically as part of the evaluation process and exported in
tabular format and plotted, and may also be computed manually using export
and plot functions. Where possible, metrics and values obtained during the
evaluation process come with confidence intervals.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
Stefan Leger [ctb],
Iram Shahzadi [ctb],
Asier Rabasco Meneghetti [ctb],
Sebastian Starke [ctb],
Technische Universitaet Dresden [cph],
German Cancer Research Center [cph]
Maintainer: Alex Zwanenburg <alexander.zwanenburg@nct-dresden.de>
Diff between familiar versions 1.2.0 dated 2022-08-16 and 1.3.0 dated 2022-10-15
DESCRIPTION | 38 MD5 | 267 ++-- NEWS.md | 50 R/ClusteringMethod.R | 10 R/DataObject.R | 31 R/Familiar.R | 31 R/FamiliarDataComputationAUCCurves.R | 6 R/FamiliarDataComputationCalibrationData.R | 6 R/FamiliarDataComputationConfusionMatrix.R | 6 R/FamiliarDataComputationDecisionCurveAnalysis.R | 12 R/FamiliarDataComputationICE.R | 7 R/FamiliarDataComputationModelPerformance.R | 6 R/FamiliarDataComputationPredictionData.R | 31 R/FamiliarDataComputationRiskStratificationData.R | 12 R/FamiliarDataComputationRiskStratificationInfo.R | 5 R/FamiliarDataElement.R | 3 R/FamiliarModel.R | 17 R/FamiliarNoveltyDetector.R | 8 R/FamiliarObjectUpdate.R | 6 R/FunctionWrapperUtilities.R | 103 + R/HyperparameterOptimisation.R | 225 ++- R/HyperparameterOptimisationUtilities.R | 68 + R/LearnerMain.R | 8 R/LearnerS4Cox.R | 10 R/LearnerS4GLM.R | 300 +++- R/LearnerS4GLMnet.R | 86 + R/LearnerS4SurvivalRegression.R | 7 R/LearnerSurvivalGrouping.R | 19 R/MetricS4.R | 6 R/PairwiseSimilarity.R | 339 ++++- R/ParallelFunctions.R | 11 R/ParseData.R | 99 + R/ParseSettings.R | 90 + R/PlotKaplanMeier.R | 2 R/PredictS4Methods.R | 66 - 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vignettes/refs.bib | 13 136 files changed, 3243 insertions(+), 1349 deletions(-)
Title: Predictive Probability for a Continuous Response with an ANOVA
Structure
Description: A Bayesian approach to using
predictive probability in an ANOVA construct with a continuous normal response,
when threshold values must be obtained for the question of interest to be
evaluated as successful (Sieck and Christensen (2021) <doi:10.1002/qre.2802>).
The Bayesian Mission Mean (BMM) is used to evaluate a question
of interest (that is, a mean that randomly selects combination of factor levels
based on their probability of occurring instead of averaging over the factor
levels, as in the grand mean). Under this construct, in contrast to a Gibbs
sampler (or Metropolis-within-Gibbs sampler), a two-stage sampling method is
required. The nested sampler determines the conditional posterior distribution
of the model parameters, given Y, and the outside sampler determines the marginal
posterior distribution of Y (also commonly called the predictive distribution for Y).
This approach provides a sample from the joint posterior distribution of Y and
the model parameters, while also [...truncated...]
Author: Victoria Sieck [aut, cre] ,
Joshua Clifford [aut] ,
Fletcher Christensen [aut]
Maintainer: Victoria Sieck <vcarrillo314@gmail.com>
Diff between ContRespPP versions 0.4.1 dated 2022-09-27 and 0.4.2 dated 2022-10-15
DESCRIPTION | 6 - MD5 | 4 tests/testthat/test-gibbs_sampler.R | 168 +++++++++++++++--------------------- 3 files changed, 75 insertions(+), 103 deletions(-)
Title: An Interpretable Machine Learning-Based Automatic Clinical Score
Generator
Description: A novel interpretable machine learning-based framework to automate the development of a clinical scoring model for predefined outcomes. Our novel framework consists of six modules: variable ranking with machine learning, variable transformation, score derivation, model selection, domain knowledge-based score fine-tuning, and performance evaluation.The The original AutoScore structure is described in the research paper<doi:10.2196/21798>. A full tutorial can be found here<https://nliulab.github.io/AutoScore/>. Users or clinicians could seamlessly generate parsimonious sparse-score risk models (i.e., risk scores), which can be easily implemented and validated in clinical practice. We hope to see its application in various medical case studies.
Author: Feng Xie [aut, cre] ,
Yilin Ning [aut] ,
Han Yuan [aut] ,
Mingxuan Liu [aut] ,
Seyed Ehsan Saffari [aut] ,
Siqi Li [aut] ,
Bibhas Chakraborty [aut] ,
Nan Liu [aut]
Maintainer: Feng Xie <xief@u.duke.nus.edu>
Diff between AutoScore versions 0.3.0 dated 2022-04-08 and 1.0.0 dated 2022-10-15
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Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-23 0.1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-08 0.2.1
2022-01-04 0.2.0
2021-10-15 0.1.1
2021-03-23 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-24 1.0.0