Title: Nonlinear Mixed Effects Models in Population PK/PD, Plot
Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
'ggplot2' plotting methods for 'nlmixr2' objects.
Author: Matthew Fidler [aut, cre] ,
Bill Denney [ctb] ,
Wenping Wang [aut],
Vipul Mann [aut]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2plot versions 2.0.6 dated 2022-05-23 and 2.0.7 dated 2022-10-19
DESCRIPTION | 16 MD5 | 43 - NAMESPACE | 77 +- NEWS.md |only R/nlmixr2PlotList.R | 86 +- R/nlmixr2plot.R | 2 R/plot.nlmixr2.R | 788 ++++++++++++------------- R/plot.nlmixr2AugPred.R | 172 ++--- R/reexports.R | 30 R/vpcPlot.R | 438 ++++++++----- R/zzz.R | 10 README.md | 433 ++++++------- man/figures/README-example-1.png |binary man/plot.nlmixr2AugPred.Rd | 120 +-- man/plot.nlmixr2FitData.Rd | 114 +-- man/reexports.Rd | 38 - man/traceplot.Rd | 120 +-- man/vpcPlot.Rd | 296 +++++---- tests/testthat.R | 8 tests/testthat/test-nlmixr2PlotList.R | 22 tests/testthat/test-plots-cens.R | 146 ++-- tests/testthat/test-plots-multiple-endpoints.R | 166 ++--- tests/testthat/test-plots.R | 240 ++++--- 23 files changed, 1750 insertions(+), 1615 deletions(-)
Title: Summary Tables and Plots for Statistical Models and Data:
Beautiful, Customizable, and Publication-Ready
Description: Create beautiful and customizable tables to summarize several
statistical models side-by-side. Draw coefficient plots, multi-level
cross-tabs, dataset summaries, balance tables (a.k.a. "Table 1s"), and
correlation matrices. This package supports dozens of statistical models, and
it can produce tables in HTML, LaTeX, Word, Markdown, PDF, PowerPoint, Excel,
RTF, JPG, or PNG. Tables can easily be embedded in 'Rmarkdown' or 'knitr'
dynamic documents. Details can be found in Arel-Bundock (2022)
<doi:10.18637/jss.v103.i01>.
Author: Vincent Arel-Bundock [aut, cre]
,
Joachim Gassen [ctb] ,
Nathan Eastwood [ctb],
Nick Huntington-Klein [ctb] ,
Moritz Schwarz [ctb] ,
Benjamin Elbers [ctb] ,
Grant McDermott [ctb] ,
Lukas Wallrich [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between modelsummary versions 1.0.2 dated 2022-07-16 and 1.1.0 dated 2022-10-19
modelsummary-1.0.2/modelsummary/man/get_vcov_type.Rd |only modelsummary-1.0.2/modelsummary/tests/testthat/test-statistic_override.R |only modelsummary-1.1.0/modelsummary/DESCRIPTION | 34 modelsummary-1.1.0/modelsummary/MD5 | 163 +- modelsummary-1.1.0/modelsummary/NAMESPACE | 2 modelsummary-1.1.0/modelsummary/NEWS.md | 24 modelsummary-1.1.0/modelsummary/R/datasummary.R | 10 modelsummary-1.1.0/modelsummary/R/datasummary_balance.R | 43 modelsummary-1.1.0/modelsummary/R/datasummary_correlation.R | 5 modelsummary-1.1.0/modelsummary/R/datasummary_crosstab.R | 16 modelsummary-1.1.0/modelsummary/R/datasummary_extract.R | 16 modelsummary-1.1.0/modelsummary/R/datasummary_skim.R | 34 modelsummary-1.1.0/modelsummary/R/dvnames.R | 7 modelsummary-1.1.0/modelsummary/R/factory.R | 11 modelsummary-1.1.0/modelsummary/R/factory_DT.R |only modelsummary-1.1.0/modelsummary/R/factory_dataframe.R | 10 modelsummary-1.1.0/modelsummary/R/factory_gt.R | 12 modelsummary-1.1.0/modelsummary/R/factory_kableExtra.R | 18 modelsummary-1.1.0/modelsummary/R/format_estimates.R | 27 modelsummary-1.1.0/modelsummary/R/format_gof.R | 5 modelsummary-1.1.0/modelsummary/R/get_estimates.R | 176 +- modelsummary-1.1.0/modelsummary/R/get_gof.R | 4 modelsummary-1.1.0/modelsummary/R/get_vcov.R | 234 --- modelsummary-1.1.0/modelsummary/R/hush.R | 1 modelsummary-1.1.0/modelsummary/R/map_estimates.R | 20 modelsummary-1.1.0/modelsummary/R/methods_fixest.R | 57 modelsummary-1.1.0/modelsummary/R/methods_stats.R | 2 modelsummary-1.1.0/modelsummary/R/modelsummary.R | 91 - modelsummary-1.1.0/modelsummary/R/rename_statistics.R | 6 modelsummary-1.1.0/modelsummary/R/sanitize_output.R | 15 modelsummary-1.1.0/modelsummary/R/sanitize_vcov.R | 178 ++ modelsummary-1.1.0/modelsummary/R/sanity_checks.R | 37 modelsummary-1.1.0/modelsummary/R/settings.R | 10 modelsummary-1.1.0/modelsummary/R/stars.R | 5 modelsummary-1.1.0/modelsummary/R/update_modelsummary.R |only modelsummary-1.1.0/modelsummary/R/utils_labels.R |only modelsummary-1.1.0/modelsummary/R/utils_pad.R | 65 modelsummary-1.1.0/modelsummary/R/utils_replace.R | 14 modelsummary-1.1.0/modelsummary/R/utils_rounding.R | 46 modelsummary-1.1.0/modelsummary/README.md | 6 modelsummary-1.1.0/modelsummary/build/modelsummary.pdf |binary modelsummary-1.1.0/modelsummary/man/datasummary.Rd | 13 modelsummary-1.1.0/modelsummary/man/datasummary_balance.Rd | 19 modelsummary-1.1.0/modelsummary/man/datasummary_correlation.Rd | 8 modelsummary-1.1.0/modelsummary/man/datasummary_crosstab.Rd | 10 modelsummary-1.1.0/modelsummary/man/datasummary_df.Rd | 8 modelsummary-1.1.0/modelsummary/man/datasummary_skim.Rd | 10 modelsummary-1.1.0/modelsummary/man/dsummary.Rd | 13 modelsummary-1.1.0/modelsummary/man/get_estimates.Rd | 26 modelsummary-1.1.0/modelsummary/man/get_gof.Rd | 10 modelsummary-1.1.0/modelsummary/man/get_vcov.Rd | 16 modelsummary-1.1.0/modelsummary/man/get_vcov.mlm.Rd | 14 modelsummary-1.1.0/modelsummary/man/modelplot.Rd | 13 modelsummary-1.1.0/modelsummary/man/modelsummary.Rd | 55 modelsummary-1.1.0/modelsummary/man/msummary.Rd | 55 modelsummary-1.1.0/modelsummary/man/update_modelsummary.Rd |only modelsummary-1.1.0/modelsummary/tests/testthat/_snaps/align.md |only modelsummary-1.1.0/modelsummary/tests/testthat/_snaps/escape.md | 2 modelsummary-1.1.0/modelsummary/tests/testthat/_snaps/gt.md | 754 +++++----- modelsummary-1.1.0/modelsummary/tests/testthat/known_output/statistic-override.rds |binary modelsummary-1.1.0/modelsummary/tests/testthat/test-add_columns.R | 10 modelsummary-1.1.0/modelsummary/tests/testthat/test-align.R |only modelsummary-1.1.0/modelsummary/tests/testthat/test-coef_rename.R | 35 modelsummary-1.1.0/modelsummary/tests/testthat/test-conf_level.R | 4 modelsummary-1.1.0/modelsummary/tests/testthat/test-custom.R | 1 modelsummary-1.1.0/modelsummary/tests/testthat/test-datasummary.R | 13 modelsummary-1.1.0/modelsummary/tests/testthat/test-datasummary_balance.R | 1 modelsummary-1.1.0/modelsummary/tests/testthat/test-escape.R | 11 modelsummary-1.1.0/modelsummary/tests/testthat/test-exponentiate.R | 9 modelsummary-1.1.0/modelsummary/tests/testthat/test-get_vcov_type.R | 19 modelsummary-1.1.0/modelsummary/tests/testthat/test-glue.R | 8 modelsummary-1.1.0/modelsummary/tests/testthat/test-gt.R | 16 modelsummary-1.1.0/modelsummary/tests/testthat/test-html.R | 7 modelsummary-1.1.0/modelsummary/tests/testthat/test-kableExtra.R | 11 modelsummary-1.1.0/modelsummary/tests/testthat/test-labels.R |only modelsummary-1.1.0/modelsummary/tests/testthat/test-latex.R | 12 modelsummary-1.1.0/modelsummary/tests/testthat/test-mathmode.R | 28 modelsummary-1.1.0/modelsummary/tests/testthat/test-modelplot.R | 11 modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-MASS.R | 7 modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-fixest.R | 34 modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-lavaan.R | 4 modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-lme4.R | 10 modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-mgcv.R |only modelsummary-1.1.0/modelsummary/tests/testthat/test-pkg-survival.R |only modelsummary-1.1.0/modelsummary/tests/testthat/test-rounding.R | 25 modelsummary-1.1.0/modelsummary/tests/testthat/test-shape.R | 30 modelsummary-1.1.0/modelsummary/tests/testthat/test-stars.R | 17 modelsummary-1.1.0/modelsummary/tests/testthat/test-vcov.R | 263 ++- 88 files changed, 1749 insertions(+), 1267 deletions(-)
Title: Portable Native and Joint Stack Traces
Description: Obtain the native stack trace and fuse it with R's
stack trace for easier debugging of R packages with native code.
Author: Kirill Mueller [aut, cre] ,
R Consortium [fnd],
Ian Lance Taylor [aut] ,
Free Software Foundation [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between winch versions 0.0.9 dated 2022-09-01 and 0.0.10 dated 2022-10-19
DESCRIPTION | 8 - MD5 | 18 +-- NEWS.md | 7 + inst/doc/report.Rmd | 2 inst/doc/report.html | 227 ++++++++++++++++++++++----------------------- src/init.c | 12 +- src/trace_back.c | 6 - src/trace_back_backtrace.c | 2 src/trace_back_unwind.c | 2 vignettes/report.Rmd | 2 10 files changed, 146 insertions(+), 140 deletions(-)
Title: Data Sets from Montgomery, Peck and Vining
Description: Most of this package consists of data sets from the
textbook Introduction
to Linear Regression Analysis (3rd ed), by Montgomery, Peck
and Vining.
Some additional data sets and functions are also included.
Author: W.J. Braun and S. MacQueen
Maintainer: W.J. Braun <john.braun@ubc.ca>
Diff between MPV versions 1.58 dated 2022-07-07 and 1.59 dated 2022-10-19
DESCRIPTION | 6 +++--- MD5 | 4 +++- data/wxNWO.rda |only man/wxNWO.Rd |only 4 files changed, 6 insertions(+), 4 deletions(-)
Title: Generalized Framework for Cross-Validation
Description: A general framework for the application of cross-validation schemes
to particular functions. By allowing arbitrary lists of results, origami
accommodates a range of cross-validation applications. This implementation
was first described by Coyle and Hejazi (2018) <doi:10.21105/joss.00512>.
Author: Jeremy Coyle [aut, cre, cph] ,
Nima Hejazi [aut] ,
Ivana Malenica [aut] ,
Rachael Phillips [aut]
Maintainer: Jeremy Coyle <jeremyrcoyle@gmail.com>
Diff between origami versions 1.0.5 dated 2021-09-28 and 1.0.7 dated 2022-10-19
DESCRIPTION | 8 MD5 | 19 - NAMESPACE | 1 NEWS.md |only R/cross_validate.R | 2 R/fold.R | 2 R/fold_funs.R | 5 R/make_folds.R | 75 +++-- build/vignette.rds |binary inst/doc/generalizedCV.html | 632 ++++++++++++++++++++++++++++---------------- tests/testthat/test-folds.R | 28 + 11 files changed, 511 insertions(+), 261 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Extra
Support Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
support functions like preconditioned fits
<doi:10.1208/s12248-016-9866-5>, boostrap and stepwise covariate
selection.
Author: Matthew Fidler [aut, cre] ,
Vipul Mann [aut],
Vishal Sarsani [aut] ,
Christian Bartels [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2extra versions 2.0.6 dated 2022-05-17 and 2.0.7 dated 2022-10-19
nlmixr2extra-2.0.6/nlmixr2extra/R/autocovar.R |only nlmixr2extra-2.0.6/nlmixr2extra/R/convert.R |only nlmixr2extra-2.0.6/nlmixr2extra/man/addCovMultiple.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/addCovVar.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/addCovariate.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/initializeCovars.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/makeDummies.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/makeHockeyStick.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/nlmixrDataToMonolix.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/performNorm.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/removeCovMultiple.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/removeCovVar.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/man/removeCovariate.Rd |only nlmixr2extra-2.0.6/nlmixr2extra/src/Makevars |only nlmixr2extra-2.0.6/nlmixr2extra/src/classicReverse.cpp |only nlmixr2extra-2.0.6/nlmixr2extra/tests/testthat/test-autocovar.R |only nlmixr2extra-2.0.7/nlmixr2extra/DESCRIPTION | 27 ++- nlmixr2extra-2.0.7/nlmixr2extra/MD5 | 75 ++++++---- nlmixr2extra-2.0.7/nlmixr2extra/NAMESPACE | 29 ++- nlmixr2extra-2.0.7/nlmixr2extra/NEWS.md |only nlmixr2extra-2.0.7/nlmixr2extra/R/RcppExports.R | 4 nlmixr2extra-2.0.7/nlmixr2extra/R/SCM.R |only nlmixr2extra-2.0.7/nlmixr2extra/R/bayesiancovsel.R |only nlmixr2extra-2.0.7/nlmixr2extra/R/bootstrap.R | 22 ++ nlmixr2extra-2.0.7/nlmixr2extra/R/computingutil.R |only nlmixr2extra-2.0.7/nlmixr2extra/R/lassocov.R |only nlmixr2extra-2.0.7/nlmixr2extra/R/parsingutil.R |only nlmixr2extra-2.0.7/nlmixr2extra/R/theoFitOde.R |only nlmixr2extra-2.0.7/nlmixr2extra/README.md | 62 ++++---- nlmixr2extra-2.0.7/nlmixr2extra/cleanup |only nlmixr2extra-2.0.7/nlmixr2extra/cleanup.win |only nlmixr2extra-2.0.7/nlmixr2extra/configure |only nlmixr2extra-2.0.7/nlmixr2extra/configure.win |only nlmixr2extra-2.0.7/nlmixr2extra/data |only nlmixr2extra-2.0.7/nlmixr2extra/inst/tools |only nlmixr2extra-2.0.7/nlmixr2extra/man/adaptivelassoCoefficients.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/addCatCovariates.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/addorremoveCovariate.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/adjustedlassoCoefficients.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/backwardSearch.Rd | 14 + nlmixr2extra-2.0.7/nlmixr2extra/man/bootplot.Rd | 15 +- nlmixr2extra-2.0.7/nlmixr2extra/man/bootstrapFit.Rd | 75 +++++++++- nlmixr2extra-2.0.7/nlmixr2extra/man/buildcovInfo.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/buildupatedUI.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/covarSearchAuto.Rd | 24 +-- nlmixr2extra-2.0.7/nlmixr2extra/man/foldgen.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/forwardSearch.Rd | 20 ++ nlmixr2extra-2.0.7/nlmixr2extra/man/horseshoeSummardf.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/lassoCoefficients.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/lassoSummardf.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/normalizedData.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/optimUnisampling.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/regularmodel.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/man/theoFitOde.Rd |only nlmixr2extra-2.0.7/nlmixr2extra/src/Makevars.in |only nlmixr2extra-2.0.7/nlmixr2extra/src/RcppExports.cpp | 22 -- nlmixr2extra-2.0.7/nlmixr2extra/src/init.c | 4 nlmixr2extra-2.0.7/nlmixr2extra/tests/testthat.R | 2 nlmixr2extra-2.0.7/nlmixr2extra/tests/testthat/test-bootstrap.R | 2 nlmixr2extra-2.0.7/nlmixr2extra/tests/testthat/test-computing.R |only nlmixr2extra-2.0.7/nlmixr2extra/tests/testthat/test-lasso.R |only nlmixr2extra-2.0.7/nlmixr2extra/tests/testthat/test-parsing.R |only 62 files changed, 248 insertions(+), 149 deletions(-)
Title: Estimation for MVN and Student-t Data with Monotone Missingness
Description: Estimation of multivariate normal (MVN) and student-t data of
arbitrary dimension where the pattern of missing data is monotone.
See Pantaleo and Gramacy (2010) <arXiv:0907.2135>.
Through the use of parsimonious/shrinkage regressions
(plsr, pcr, lasso, ridge, etc.), where standard regressions fail,
the package can handle a nearly arbitrary amount of missing data.
The current version supports maximum likelihood inference and
a full Bayesian approach employing scale-mixtures for Gibbs sampling.
Monotone data augmentation extends this Bayesian approach to arbitrary
missingness patterns. A fully functional standalone interface to the
Bayesian lasso (from Park & Casella), Normal-Gamma (from Griffin & Brown),
Horseshoe (from Carvalho, Polson, & Scott), and ridge regression
with model selection via Reversible Jump, and student-t errors
(from Geweke) is also provided.
Author: Robert B. Gramacy <rbg@vt.edu>, with Fortran contributions from Cleve Moler as updated by Berwin A. Turlach
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between monomvn versions 1.9-15 dated 2022-04-06 and 1.9-16 dated 2022-10-19
ChangeLog | 6 ++++ DESCRIPTION | 8 +++--- MD5 | 14 +++++------ man/bmonomvn.Rd | 4 +-- man/returns.Rd | 4 +-- src/linalg.c | 65 ++++++++++++++--------------------------------------- src/monomvn_init.c | 4 +-- src/rgig.c | 5 +++- 8 files changed, 45 insertions(+), 65 deletions(-)
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). The related 'candisc' package
provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Georges Monette [aut],
Phil Chalmers [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.4-1 dated 2022-10-01 and 1.4-2 dated 2022-10-19
DESCRIPTION | 8 MD5 | 82 - NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 5 inst/doc/HE_manova.Rmd | 2 inst/doc/HE_manova.html | 28 inst/doc/HE_mmra.Rmd | 2 inst/doc/HE_mmra.html | 30 man/heplot-package.Rd | 4 vignettes/HE_manova.Rmd | 2 vignettes/HE_mmra.Rmd | 2 vignettes/apa.csl | 1242 ++++++++++++++-------------- vignettes/fig/manova-jury-can1-1.png |binary vignettes/fig/manova-jury-mod1-HE-1.png |binary vignettes/fig/manova-jury-mod1-pairs-1.png |binary vignettes/fig/manova-jury-mod2-HE-1.png |binary vignettes/fig/manova-jury-mod3-eff-1.png |binary vignettes/fig/manova-plastic1-1.png |binary vignettes/fig/manova-plastic1a-1.png |binary vignettes/fig/manova-plastic2-1.png |binary vignettes/fig/manova-skulls-HE-pairs-1.png |binary vignettes/fig/manova-skulls-bwplot-1.png |binary vignettes/fig/manova-skulls4-1.png |binary vignettes/fig/mmra-grades-can-all-1.png |binary vignettes/fig/mmra-grades-can-all-2.png |binary vignettes/fig/mmra-grades-can-class-1.png |binary vignettes/fig/mmra-grades-pairs-1.png |binary vignettes/fig/mmra-hern-can1-1.png |binary vignettes/fig/mmra-hern-can1-2.png |binary vignettes/fig/mmra-hern-can2-1.png |binary vignettes/fig/mmra-hern-can2-2.png |binary vignettes/fig/mmra-hern-pairs-1.png |binary vignettes/fig/mmra-rohwer-HE1-1.png |binary vignettes/fig/mmra-rohwer-HE2-1.png |binary vignettes/fig/mmra-rohwer-HE2-2.png |binary vignettes/fig/mmra-rohwer-HE3-1.png |binary vignettes/fig/mmra-rohwer-HE4-1.png |binary vignettes/fig/mmra-rohwer-coefplot-1.png |binary vignettes/fig/mmra-rohwer-coefplot-2.png |binary vignettes/fig/mmra-rohwer-long-ggplot-1.png |binary 42 files changed, 712 insertions(+), 699 deletions(-)
Title: Make Waffle Plots with Base Graphics
Description: Waffle plots are rectangular pie charts that represent a quantity or abundances using
colored squares or other symbol. This makes them better at transmitting information as the
discrete number of squares is easier to read than the circular area of pie charts.
While the original waffle charts were rectangular with 10 rows and columns, with a single square
representing 1%, they are nowadays popular in various infographics to visualize any
proportional ratios.
Author: Jiri Moravec [aut, cre]
Maintainer: Jiri Moravec <jiri.c.moravec@gmail.com>
Diff between baffle versions 0.2.0 dated 2022-08-23 and 0.2.1 dated 2022-10-19
DESCRIPTION | 6 +++--- MD5 | 11 +++++++---- NAMESPACE | 3 +++ NEWS.md |only R/round_rect.r |only R/shapes.r | 41 ++++++++++++++++++++++++++++++++++++++--- man/Shapes.Rd | 31 +++++++++++++++++++++++++++++-- man/round_rect.Rd |only 8 files changed, 80 insertions(+), 12 deletions(-)
Title: Numerical Estimation of Sparse Hessians
Description: Estimates Hessian of a scalar-valued function, and returns it
in a sparse Matrix format. The sparsity pattern must be known in advance. The
algorithm is especially efficient for hierarchical models with a large number of
heterogeneous units. See Braun, M. (2017) <doi:10.18637/jss.v082.i10>.
Author: Michael Braun [aut, cre, cph]
Maintainer: Michael Braun <braunm@smu.edu>
Diff between sparseHessianFD versions 0.3.3.6 dated 2022-08-16 and 0.3.3.7 dated 2022-10-19
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NEWS | 8 ++++++++ NEWS.md | 5 +++++ inst/doc/sparseHessianFD.R | 4 ++-- inst/doc/sparseHessianFD.Rnw | 8 ++++---- inst/doc/sparseHessianFD.pdf |binary vignettes/sparseHessianFD.Rnw | 8 ++++---- 8 files changed, 36 insertions(+), 23 deletions(-)
More information about sparseHessianFD at CRAN
Permanent link
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut] ,
Scott Chamberlain [aut] ,
Hilmar Lapp [aut] ,
Kseniia Shumelchyk [aut],
Rutger Vos [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.4.7 dated 2022-05-13 and 2.4.8 dated 2022-10-19
RNeXML-2.4.7/RNeXML/tests/testthat/Rplots.pdf |only RNeXML-2.4.8/RNeXML/DESCRIPTION | 10 ++--- RNeXML-2.4.8/RNeXML/MD5 | 23 ++++++------ RNeXML-2.4.8/RNeXML/NAMESPACE | 7 ++- RNeXML-2.4.8/RNeXML/NEWS.md | 6 +++ RNeXML-2.4.8/RNeXML/R/get_characters.R | 47 +++++++++++++------------- RNeXML-2.4.8/RNeXML/R/get_level.R | 20 ++++++----- RNeXML-2.4.8/RNeXML/build/vignette.rds |binary RNeXML-2.4.8/RNeXML/inst/doc/S4.html | 13 +++++-- RNeXML-2.4.8/RNeXML/inst/doc/intro.html | 13 +++++-- RNeXML-2.4.8/RNeXML/inst/doc/metadata.html | 13 +++++-- RNeXML-2.4.8/RNeXML/inst/doc/simmap.html | 13 +++++-- RNeXML-2.4.8/RNeXML/inst/doc/sparql.html | 13 +++++-- 13 files changed, 112 insertions(+), 66 deletions(-)
Title: Minimalist Async Evaluation Framework for R
Description: Simple and lightweight parallelism and concurrent code execution,
local or distributed across the network, built on 'nanonext' and 'NNG'
(Nanomsg Next Gen) technology.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between mirai versions 0.6.0 dated 2022-09-16 and 0.7.0 dated 2022-10-19
DESCRIPTION | 16 - MD5 | 25 +- NAMESPACE | 1 NEWS.md | 10 - R/mirai-package.R | 19 + R/mirai.R | 486 ++++++++++++++++++++++++--------------------------- README.md | 85 ++++++-- man/call_mirai.Rd | 2 man/daemons.Rd | 50 +++-- man/mirai-package.Rd | 6 man/server.Rd |only man/stop_mirai.Rd | 2 man/unresolved.Rd | 4 tests/tests.R | 27 ++ 14 files changed, 408 insertions(+), 325 deletions(-)
Title: A Framework for Parallelizing Dependent Tasks
Description: Mechanisms to parallelize dependent tasks in a manner that
optimizes the compute resources available. It provides access to "delayed"
computations, which may be parallelized using futures. It is, to an extent,
a facsimile of the 'Dask' library (<https://www.dask.org/>), for the 'Python'
language.
Author: Jeremy Coyle [aut, cre, cph] ,
Nima Hejazi [ctb]
Maintainer: Jeremy Coyle <jeremyrcoyle@gmail.com>
Diff between delayed versions 0.3.0 dated 2020-02-28 and 0.4.0 dated 2022-10-19
DESCRIPTION | 15 MD5 | 21 - NAMESPACE | 4 R/Delayed.R | 52 ++ R/Job.R | 67 ++- R/Scheduler.R | 27 + build/vignette.rds |binary inst/doc/delayed.html | 796 +++++++++++++++++++++++++--------------- man/delayed.Rd | 6 man/eval_delayed.Rd |only tests/testthat/test_benchmark.R | 72 +-- tests/testthat/test_seed.R |only tests/testthat/test_timeout.R |only 13 files changed, 703 insertions(+), 357 deletions(-)
Title: Companion to Applied Regression
Description: Functions to Accompany J. Fox and S. Weisberg,
An R Companion to Applied Regression, Third Edition, Sage, 2019.
Author: John Fox [aut, cre],
Sanford Weisberg [aut],
Brad Price [aut],
Daniel Adler [ctb],
Douglas Bates [ctb],
Gabriel Baud-Bovy [ctb],
Ben Bolker [ctb],
Steve Ellison [ctb],
David Firth [ctb],
Michael Friendly [ctb],
Gregor Gorjanc [ctb],
Spencer Graves [c [...truncated...]
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between car versions 3.1-0 dated 2022-06-15 and 3.1-1 dated 2022-10-19
DESCRIPTION | 23 ++++----- MD5 | 40 ++++++++-------- NAMESPACE | 11 +++- NEWS | 18 +++++++ R/Anova.R | 76 +++++++++++++++++++++----------- R/Boxplot.R | 5 +- R/Ellipse.R | 116 ++++++++++++++++++++++++++++++++++++++++++++++--- R/crPlot3d.R | 4 + R/hccm.R | 21 ++++---- R/influencePlot.R | 35 +++++++++++++- R/pointLabel.R |only R/scatter3d.R | 32 +++++++++++-- R/showLabels.R | 4 - build/vignette.rds |binary inst/doc/embedding.pdf |binary man/Ellipses.Rd | 35 ++++++++++++-- man/avPlots.Rd | 2 man/crPlots.Rd | 9 ++- man/hccm.Rd | 17 +++++-- man/influencePlot.Rd | 10 ++-- man/pointLabel.Rd |only man/scatter3d.Rd | 30 ++++++++++++ 22 files changed, 383 insertions(+), 105 deletions(-)
Title: Approximate POMDP Planning Software
Description: A toolkit for Partially Observed Markov Decision Processes (POMDP). Provides
bindings to C++ libraries implementing the algorithm SARSOP (Successive Approximations
of the Reachable Space under Optimal Policies) and described in Kurniawati et al (2008),
<doi:10.15607/RSS.2008.IV.009>. This package also provides a high-level interface
for generating, solving and simulating POMDP problems and their solutions.
Author: Carl Boettiger [cre, aut, cph]
,
Jeroen Ooms [aut],
Milad Memarzadeh [aut],
Hanna Kurniawati [ctb, cph],
David Hsu [ctb, cph],
Hanna Kurniawati [ctb, cph],
Wee Sun Lee [ctb, cph],
Yanzhu Du [ctb],
Xan Huang [ctb],
Trey Smith [ctb, cph],
Tony Cassandr [...truncated...]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between sarsop versions 0.6.12 dated 2022-10-12 and 0.6.13 dated 2022-10-19
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ src/appl-0.96/Parser/Cassandra/parse_err.c | 8 ++++---- 4 files changed, 15 insertions(+), 10 deletions(-)
Title: Analysis of MHC Data in Non-Model Species
Description: Fifteen tools for bioinformatics processing and analysis of major
histocompatibility complex (MHC) data. The functions are tailored for amplicon data
sets that have been filtered using the dada2 method (for more information on
dada2, visit <https://benjjneb.github.io/dada2/> ), but even other types of data
sets can be analyzed.
The ReplMatch() function matches replicates in data sets in order to evaluate
genotyping success.
The GetReplTable() and GetReplStats() functions perform such an evaluation.
The CreateFas() function creates a fasta file with all the sequences in the data
set.
The CreateSamplesFas() function creates individual fasta files for each sample in
the data set.
The DistCalc() function calculates Grantham, Sandberg, or p-distances from pairwise
comparisons of all sequences in a data set, and mean distances of all pairwise
comparisons within each sample in a data set. The function additionally outputs five
tables with physico-chemical z-descriptor values (based on S [...truncated...]
Author: Jacob Roved [aut, cre]
Maintainer: Jacob Roved <jacob.roved@biol.lu.se>
Diff between MHCtools versions 1.4.3 dated 2022-08-15 and 1.5.0 dated 2022-10-19
MHCtools-1.4.3/MHCtools/R/DistCalc_func_20200902.R |only MHCtools-1.4.3/MHCtools/R/ReplMatch_func_20200914.R |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest10_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest1_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest2_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest3_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest4_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest5_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest6_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest7_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest8_20200915.Rds |only MHCtools-1.4.3/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest9_20200915.Rds |only MHCtools-1.5.0/MHCtools/DESCRIPTION | 44 +++-- MHCtools-1.5.0/MHCtools/MD5 | 74 +++++----- MHCtools-1.5.0/MHCtools/NAMESPACE | 9 + MHCtools-1.5.0/MHCtools/NEWS.md | 36 ++++ MHCtools-1.5.0/MHCtools/R/BootKmeans_func_20210910.R | 52 +++---- MHCtools-1.5.0/MHCtools/R/ClusterMatch_func_20210910.R | 30 ++-- MHCtools-1.5.0/MHCtools/R/CreateFas_func_20170924.R | 6 MHCtools-1.5.0/MHCtools/R/CreateHpltOccTable_func_20221010.R |only MHCtools-1.5.0/MHCtools/R/CreateSamplesFas_func_20170924.R | 9 - MHCtools-1.5.0/MHCtools/R/DistCalc_func_20221007.R |only MHCtools-1.5.0/MHCtools/R/GetHpltStats_func_20200915.R | 3 MHCtools-1.5.0/MHCtools/R/GetHpltTable_func_20200915.R | 4 MHCtools-1.5.0/MHCtools/R/GetReplStats_func_20200914.R | 6 MHCtools-1.5.0/MHCtools/R/GetReplTable_func_20200914.R | 4 MHCtools-1.5.0/MHCtools/R/HpltFind_func_20220802.R | 26 +-- MHCtools-1.5.0/MHCtools/R/HpltMatch_func_20221014.R |only MHCtools-1.5.0/MHCtools/R/NestTablesXL_func_20221012.R |only MHCtools-1.5.0/MHCtools/R/PapaDiv_func_20200915.R | 8 - MHCtools-1.5.0/MHCtools/R/ReplMatch_func_20221007.R |only MHCtools-1.5.0/MHCtools/R/hplt_occurrence_matrix.R |only MHCtools-1.5.0/MHCtools/R/sequence_table_hplt.R |only MHCtools-1.5.0/MHCtools/README.md | 30 ++-- MHCtools-1.5.0/MHCtools/data/hplt_occurrence_matrix.rda |only MHCtools-1.5.0/MHCtools/data/nest_table.rda |binary MHCtools-1.5.0/MHCtools/data/sequence_table_hplt.rda |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest10_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest1_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest2_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest3_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest4_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest5_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest6_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest7_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest8_20221018.Rds |only MHCtools-1.5.0/MHCtools/inst/extdata/HpltFindOut/Haplotypes_nest9_20221018.Rds |only MHCtools-1.5.0/MHCtools/man/ClusterMatch.Rd | 4 MHCtools-1.5.0/MHCtools/man/CreateHpltOccTable.Rd |only MHCtools-1.5.0/MHCtools/man/DistCalc.Rd | 5 MHCtools-1.5.0/MHCtools/man/HpltFind.Rd | 12 + MHCtools-1.5.0/MHCtools/man/HpltMatch.Rd |only MHCtools-1.5.0/MHCtools/man/NestTablesXL.Rd |only MHCtools-1.5.0/MHCtools/man/ReplMatch.Rd | 13 + MHCtools-1.5.0/MHCtools/man/hplt_occurrence_matrix.Rd |only MHCtools-1.5.0/MHCtools/man/sequence_table_hplt.Rd |only 56 files changed, 212 insertions(+), 163 deletions(-)
Title: Fast Fixed-Effects Estimations
Description: Fast and user-friendly estimation of econometric models with multiple fixed-effects. Includes ordinary least squares (OLS), generalized linear models (GLM) and the negative binomial.
The core of the package is based on optimized parallel C++ code, scaling especially well for large data sets. The method to obtain the fixed-effects coefficients is based on Berge (2018) <https://wwwen.uni.lu/content/download/110162/1299525/file/2018_13>.
Further provides tools to export and view the results of several estimations with intuitive design to cluster the standard-errors.
Author: Laurent Berge [aut, cre],
Sebastian Krantz [ctb],
Grant McDermott [ctb]
Maintainer: Laurent Berge <laurent.berge@u-bordeaux.fr>
Diff between fixest versions 0.10.4 dated 2022-03-31 and 0.11.0 dated 2022-10-19
fixest-0.10.4/fixest/man/cash-.fixest_multi.Rd |only fixest-0.11.0/fixest/DESCRIPTION | 8 fixest-0.11.0/fixest/MD5 | 246 fixest-0.11.0/fixest/NAMESPACE | 30 fixest-0.11.0/fixest/NEWS.md | 435 - fixest-0.11.0/fixest/R/ESTIMATION_FUNS.R | 637 + fixest-0.11.0/fixest/R/Lagging.R | 94 fixest-0.11.0/fixest/R/Methods.R | 3635 +++++++++ fixest-0.11.0/fixest/R/MiscFuns.R | 6037 +--------------- fixest-0.11.0/fixest/R/RcppExports.R | 4 fixest-0.11.0/fixest/R/VCOV.R | 116 fixest-0.11.0/fixest/R/coefplot.R | 115 fixest-0.11.0/fixest/R/data_tools.R |only fixest-0.11.0/fixest/R/did.R | 52 fixest-0.11.0/fixest/R/dsb.R | 20 fixest-0.11.0/fixest/R/etable.R | 928 +- fixest-0.11.0/fixest/R/etable_aliases.R | 4 fixest-0.11.0/fixest/R/femlm.R | 6 fixest-0.11.0/fixest/R/fitstats.R | 119 fixest-0.11.0/fixest/R/fixest_env.R | 562 + fixest-0.11.0/fixest/R/fixest_multi.R | 1037 +- fixest-0.11.0/fixest/R/index.R | 14 fixest-0.11.0/fixest/R/onLoad.R | 2 fixest-0.11.0/fixest/R/startup.R |only fixest-0.11.0/fixest/R/test_fun.R | 6 fixest-0.11.0/fixest/README.md | 11 fixest-0.11.0/fixest/build/vignette.rds |binary fixest-0.11.0/fixest/inst/doc/exporting_tables.html | 117 fixest-0.11.0/fixest/inst/doc/fixest_walkthrough.Rmd | 4 fixest-0.11.0/fixest/inst/doc/fixest_walkthrough.html | 656 - fixest-0.11.0/fixest/inst/doc/multiple_estimations.html | 177 fixest-0.11.0/fixest/inst/doc/standard_errors.html | 17 fixest-0.11.0/fixest/man/AIC.fixest.Rd | 8 fixest-0.11.0/fixest/man/BIC.fixest.Rd | 8 fixest-0.11.0/fixest/man/aggregate.fixest.Rd | 6 fixest-0.11.0/fixest/man/as.dict.Rd |only fixest-0.11.0/fixest/man/as.list.fixest_multi.Rd | 2 fixest-0.11.0/fixest/man/bin.Rd | 20 fixest-0.11.0/fixest/man/bread.fixest.Rd | 2 fixest-0.11.0/fixest/man/check_conv_feols.Rd | 94 fixest-0.11.0/fixest/man/coef.fixest.Rd | 24 fixest-0.11.0/fixest/man/coef.fixest_multi.Rd | 133 fixest-0.11.0/fixest/man/coefplot.Rd | 42 fixest-0.11.0/fixest/man/coeftable.Rd | 103 fixest-0.11.0/fixest/man/coeftable.default.Rd |only fixest-0.11.0/fixest/man/coeftable.fixest.Rd |only fixest-0.11.0/fixest/man/coeftable.fixest_multi.Rd |only fixest-0.11.0/fixest/man/collinearity.Rd | 4 fixest-0.11.0/fixest/man/confint.fixest.Rd | 26 fixest-0.11.0/fixest/man/confint.fixest_multi.Rd |only fixest-0.11.0/fixest/man/degrees_freedom.Rd | 18 fixest-0.11.0/fixest/man/demean.Rd | 10 fixest-0.11.0/fixest/man/deviance.fixest.Rd | 2 fixest-0.11.0/fixest/man/did_means.Rd | 4 fixest-0.11.0/fixest/man/dsb.Rd | 1 fixest-0.11.0/fixest/man/est_env.Rd | 22 fixest-0.11.0/fixest/man/estfun.fixest.Rd | 2 fixest-0.11.0/fixest/man/etable.Rd | 74 fixest-0.11.0/fixest/man/extralines_register.Rd | 86 fixest-0.11.0/fixest/man/fdim.Rd |only fixest-0.11.0/fixest/man/feNmlm.Rd | 70 fixest-0.11.0/fixest/man/feglm.Rd | 78 fixest-0.11.0/fixest/man/femlm.Rd | 66 fixest-0.11.0/fixest/man/feols.Rd | 95 fixest-0.11.0/fixest/man/fitstat.Rd | 20 fixest-0.11.0/fixest/man/fitstat_register.Rd | 4 fixest-0.11.0/fixest/man/fitted.fixest.Rd | 10 fixest-0.11.0/fixest/man/fixef.fixest.Rd | 10 fixest-0.11.0/fixest/man/fixef_reexported.Rd | 4 fixest-0.11.0/fixest/man/fixest.Rd | 12 fixest-0.11.0/fixest/man/fixest_startup_msg.Rd | 2 fixest-0.11.0/fixest/man/formula.fixest.Rd | 8 fixest-0.11.0/fixest/man/hatvalues.fixest.Rd | 4 fixest-0.11.0/fixest/man/i.Rd | 12 fixest-0.11.0/fixest/man/l.Rd | 10 fixest-0.11.0/fixest/man/lag.formula.Rd | 9 fixest-0.11.0/fixest/man/logLik.fixest.Rd | 8 fixest-0.11.0/fixest/man/model.matrix.fixest.Rd | 8 fixest-0.11.0/fixest/man/models.Rd |only fixest-0.11.0/fixest/man/n_unik.Rd | 271 fixest-0.11.0/fixest/man/nobs.fixest.Rd | 8 fixest-0.11.0/fixest/man/obs.Rd | 4 fixest-0.11.0/fixest/man/osize.Rd | 65 fixest-0.11.0/fixest/man/panel.Rd | 14 fixest-0.11.0/fixest/man/plot.fixest.fixef.Rd | 6 fixest-0.11.0/fixest/man/predict.fixest.Rd | 12 fixest-0.11.0/fixest/man/print.fixest.Rd | 43 fixest-0.11.0/fixest/man/print.fixest_fitstat.Rd | 4 fixest-0.11.0/fixest/man/print.fixest_multi.Rd | 4 fixest-0.11.0/fixest/man/r2.Rd | 6 fixest-0.11.0/fixest/man/ref.Rd | 218 fixest-0.11.0/fixest/man/rep.fixest.Rd | 2 fixest-0.11.0/fixest/man/resid.fixest.Rd | 10 fixest-0.11.0/fixest/man/resid.fixest_multi.Rd | 104 fixest-0.11.0/fixest/man/sample_df.Rd | 59 fixest-0.11.0/fixest/man/sandwich_reexported.Rd | 2 fixest-0.11.0/fixest/man/setFixest_coefplot.Rd | 32 fixest-0.11.0/fixest/man/setFixest_dict.Rd | 35 fixest-0.11.0/fixest/man/setFixest_estimation.Rd | 4 fixest-0.11.0/fixest/man/setFixest_fml.Rd | 51 fixest-0.11.0/fixest/man/setFixest_vcov.Rd | 2 fixest-0.11.0/fixest/man/sigma.fixest.Rd | 2 fixest-0.11.0/fixest/man/ssc.Rd | 12 fixest-0.11.0/fixest/man/style.df.Rd | 175 fixest-0.11.0/fixest/man/style.tex.Rd | 288 fixest-0.11.0/fixest/man/sub-.fixest_multi.Rd | 12 fixest-0.11.0/fixest/man/sub-.fixest_panel.Rd | 14 fixest-0.11.0/fixest/man/sub-sub-.fixest_multi.Rd | 2 fixest-0.11.0/fixest/man/summary.fixest.Rd | 18 fixest-0.11.0/fixest/man/summary.fixest.fixef.Rd | 6 fixest-0.11.0/fixest/man/summary.fixest_multi.Rd | 8 fixest-0.11.0/fixest/man/sunab.Rd | 12 fixest-0.11.0/fixest/man/terms.fixest.Rd | 4 fixest-0.11.0/fixest/man/to_integer.Rd | 5 fixest-0.11.0/fixest/man/unpanel.Rd | 4 fixest-0.11.0/fixest/man/update.fixest.Rd | 14 fixest-0.11.0/fixest/man/vcov.fixest.Rd | 20 fixest-0.11.0/fixest/man/vcov_cluster.Rd | 4 fixest-0.11.0/fixest/man/vcov_conley.Rd | 6 fixest-0.11.0/fixest/man/vcov_hac.Rd | 6 fixest-0.11.0/fixest/man/wald.Rd | 16 fixest-0.11.0/fixest/man/weights.fixest.Rd | 2 fixest-0.11.0/fixest/man/xpd.Rd | 67 fixest-0.11.0/fixest/src/RcppExports.cpp | 12 fixest-0.11.0/fixest/src/demeaning.cpp | 1 fixest-0.11.0/fixest/src/misc_funs.cpp | 192 fixest-0.11.0/fixest/src/quf.cpp | 2 fixest-0.11.0/fixest/tests/fixest_tests.R | 1294 ++- fixest-0.11.0/fixest/vignettes/fixest_walkthrough.Rmd | 4 129 files changed, 10014 insertions(+), 9354 deletions(-)
Title: High Performance Container Data Types
Description: Provides high performance container data types such
as queues, stacks, deques, dicts and ordered dicts. Benchmarks
<https://randy3k.github.io/collections/articles/benchmark.html> have
shown that these containers are asymptotically more efficient than
those offered by other packages.
Author: Randy Lai [aut, cre],
Andrea Mazzoleni [cph] ,
Yann Collet [cph]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between collections versions 0.3.5 dated 2020-08-10 and 0.3.6 dated 2022-10-19
DESCRIPTION | 13 +++++------ MD5 | 12 +++++----- README.md | 60 +++++++++++++++++++++++++++++++++++------------------- src/collections.c | 2 - src/dict.c | 5 ++-- src/utils.c | 4 +-- src/utils.h | 2 - 7 files changed, 58 insertions(+), 40 deletions(-)
Title: Soil Organic Carbon and CN Ratio Driven Nitrogen Modelling
Framework
Description: Can be used to model the fate of soil organic carbon and soil organic nitrogen and to calculate N mineralisation rates. Provides a framework that numerically solves differential equations of soil organic carbon models based on first-order kinetics and extends these models to include the nitrogen component. The name 'sorcering' is an acronym for 'Soil ORganic Carbon & CN Ratio drIven Nitrogen modellinG framework'.
Author: Marc Scherstjanoi [aut, cre],
Rene Dechow [aut]
Maintainer: Marc Scherstjanoi <marc.scherstjanoi@thuenen.de>
Diff between sorcering versions 0.9.2 dated 2021-08-02 and 0.9.2.2 dated 2022-10-19
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- build/partial.rdb |binary build/sorcering.pdf |binary build/vignette.rds |binary inst/doc/sorcering.Rnw | 2 +- inst/doc/sorcering.pdf |binary src/sorcering.cpp | 8 ++++---- vignettes/sorcering.Rnw | 2 +- vignettes/sorcering_vignette.pdf |binary 10 files changed, 19 insertions(+), 19 deletions(-)
Title: Nonlinear Mixed Effects Models in Population PK/PD, Estimation
Routines
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>).
Author: Matthew Fidler [aut, cre] ,
Yuan Xiong [aut],
Rik Schoemaker [aut] ,
Justin Wilkins [aut] ,
Wenping Wang [aut],
Robert Leary [ctb],
Mason McComb [ctb] ,
Vipul Mann [aut],
Mirjam Trame [ctb],
Mahmoud Abdelwahab [ctb],
Teun Post [ctb],
Richard Hooijmai [...truncated...]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2est versions 2.0.8 dated 2022-06-22 and 2.1.0 dated 2022-10-19
DESCRIPTION | 14 MD5 | 141 +-- NAMESPACE | 21 NEWS.md | 92 ++ R/RcppExports.R | 12 R/addCwres.R | 2 R/asFunction.R |only R/assert.R | 6 R/cloneNlmixr.R | 2 R/focei.R | 385 +++++++- R/foceiControl.R | 178 +++- R/nlme.R | 2 R/nlmixr2.R | 38 R/nlmixr2Est.R | 20 R/nlmixr2_md5.R | 2 R/nlmixr2output.R | 19 R/nlmixrUpdateObject.R | 2 R/nmObjGet.R | 176 +++- R/npde.R | 6 R/onLoad.R | 2 R/preProcessModel.R | 4 R/print.R | 56 - R/resid.R | 178 ++-- R/saemControl.R | 2 R/sharedControl.R | 2 R/simulate.R | 62 + R/splitModelRxUiGet.R | 14 R/utils.R | 56 + R/validate.R | 1 R/vpc.R | 101 +- inst/tools/workaround.R | 24 man/dot-nlmixr2objectNameAssign.Rd |only man/figures/README-example-1.png |binary man/foceiControl.Rd | 109 ++ man/getValidNlmixrControl.Rd | 4 man/nlmixr2CreateOutputFromUi.Rd | 1 man/nlmixr2NlmeControl.Rd | 2 man/nlmixrUpdateObject.Rd | 4 man/nmNearPD.Rd |only man/nmObjGet.Rd | 9 man/nmObjUiSetCompressed.Rd |only man/saemControl.Rd | 12 man/vpcSim.Rd | 6 man/vpcSimExpand.Rd | 5 src/Makevars.in | 15 src/RcppExportMod.cpp | 59 - src/RcppExports.cpp | 43 src/armahead.h | 28 src/censEst.cpp |only src/censEst.h | 37 src/censResid.cpp | 260 +++-- src/censResid.h | 52 - src/cholse.cpp | 140 +-- src/cwres.cpp | 276 +++--- src/filterNormalLike.cpp |only src/init.c | 19 src/inner.cpp | 1573 +++++++++++++++++++++++++----------- src/ires.cpp | 32 src/nearPD.cpp |only src/nearPD.h |only src/npde.cpp | 3 src/npde.h | 5 src/res.cpp | 154 +-- src/saem.cpp | 5 src/shi21.cpp |only src/shi21.h |only src/shrink.cpp | 18 tests/testthat/test-augpred.R | 64 - tests/testthat/test-fix-eta.R |only tests/testthat/test-focei-cens.R | 75 + tests/testthat/test-focei-inner.R | 30 tests/testthat/test-focei-llik.R |only tests/testthat/test-focei.R |only tests/testthat/test-lag.R |only tests/testthat/test-nearPd.R |only tests/testthat/test-restart.R |only tests/testthat/test-sens-fd.R | 9 tests/testthat/test-simulation.R |only tests/testthat/test-split.R |only tests/testthat/test-table-cmt.R | 6 tests/testthat/test-ui-est-change.R |only 81 files changed, 3408 insertions(+), 1267 deletions(-)
Title: Generalized Spatial-Time Sequence Miner
Description: Implementations of the algorithms present article
Generalized Spatial-Time Sequence Miner, original title
(Castro, Antonio; Borges, Heraldo ; Pacitti, Esther ; Porto, Fabio
; Coutinho, Rafaelli ; Ogasawara, Eduardo . Generalização de Mineração de
Sequências Restritas no Espaço e no Tempo. In: XXXVI SBBD -
Simpósio Brasileiro de Banco de Dados, 2021 <doi:10.5753/sbbd.2021.17891>).
Author: Antonio Castro [aut, cre],
Cassio Souza [aut, ctb],
Jorge Rodrigues [aut, ctb],
Esther Pacitti [aut],
Fabio Porto [aut],
Florent Masseglia [aut],
Rafaelli Coutinho [aut, ths],
Eduardo Ogasawara [aut, ths] ,
Federal Center for Technological Education [...truncated...]
Maintainer: Antonio Castro <gstsm@eic.cefet-rj.br>
Diff between gstsm versions 0.0.1 dated 2021-11-08 and 1.0.0 dated 2022-10-19
gstsm-0.0.1/gstsm/R/globals.r |only gstsm-0.0.1/gstsm/inst |only gstsm-0.0.1/gstsm/tests/testthat/test-split_groups.R |only gstsm-1.0.0/gstsm/DESCRIPTION | 80 +- gstsm-1.0.0/gstsm/LICENSE | 4 gstsm-1.0.0/gstsm/MD5 | 77 +- gstsm-1.0.0/gstsm/NAMESPACE | 30 gstsm-1.0.0/gstsm/NEWS.md | 14 gstsm-1.0.0/gstsm/R/find.R |only gstsm-1.0.0/gstsm/R/find.default.R |only gstsm-1.0.0/gstsm/R/find.gstsm.R |only gstsm-1.0.0/gstsm/R/find_kernel_ranged_group.R | 137 +-- gstsm-1.0.0/gstsm/R/generate_adjacency_matrix.R | 60 - gstsm-1.0.0/gstsm/R/generate_candidates.R | 87 -- gstsm-1.0.0/gstsm/R/generate_candidates.default.R |only gstsm-1.0.0/gstsm/R/generate_candidates.gstsm.R |only gstsm-1.0.0/gstsm/R/globals.R |only gstsm-1.0.0/gstsm/R/gstsm.R | 204 +---- gstsm-1.0.0/gstsm/R/merge.R |only gstsm-1.0.0/gstsm/R/merge.default.R |only gstsm-1.0.0/gstsm/R/merge.gstsm.R |only gstsm-1.0.0/gstsm/R/merge_kernel_ranged_groups.R | 247 +++---- gstsm-1.0.0/gstsm/R/merge_open_kernel_ranged_groups.R | 295 ++++---- gstsm-1.0.0/gstsm/R/mine.R |only gstsm-1.0.0/gstsm/R/mine.default.R |only gstsm-1.0.0/gstsm/R/mine.gstsm.R |only gstsm-1.0.0/gstsm/R/split_groups.R | 107 +-- gstsm-1.0.0/gstsm/R/validate_and_close.R | 63 - gstsm-1.0.0/gstsm/R/validate_kernel_ranged_groups.R | 95 +- gstsm-1.0.0/gstsm/README.md | 521 +++++---------- gstsm-1.0.0/gstsm/man/find.Rd |only gstsm-1.0.0/gstsm/man/find.default.Rd |only gstsm-1.0.0/gstsm/man/find.gstsm.Rd |only gstsm-1.0.0/gstsm/man/find_kernel_ranged_group.Rd | 52 - gstsm-1.0.0/gstsm/man/generate_adjacency_matrix.Rd | 38 - gstsm-1.0.0/gstsm/man/generate_candidates.Rd | 45 - gstsm-1.0.0/gstsm/man/generate_candidates.default.Rd |only gstsm-1.0.0/gstsm/man/generate_candidates.gstsm.Rd |only gstsm-1.0.0/gstsm/man/gstsm.Rd | 124 +-- gstsm-1.0.0/gstsm/man/merge.Rd |only gstsm-1.0.0/gstsm/man/merge.default.Rd |only gstsm-1.0.0/gstsm/man/merge.gstsm.Rd |only gstsm-1.0.0/gstsm/man/merge_kernel_ranged_groups.Rd | 46 - gstsm-1.0.0/gstsm/man/merge_open_kernel_ranged_groups.Rd | 54 - gstsm-1.0.0/gstsm/man/mine.Rd |only gstsm-1.0.0/gstsm/man/mine.default.Rd |only gstsm-1.0.0/gstsm/man/mine.gstsm.Rd |only gstsm-1.0.0/gstsm/man/split_groups.Rd | 38 - gstsm-1.0.0/gstsm/man/validate_and_close.Rd | 48 - gstsm-1.0.0/gstsm/man/validate_kernel_ranged_groups.Rd | 58 - gstsm-1.0.0/gstsm/tests/testthat.R | 8 gstsm-1.0.0/gstsm/tests/testthat/test-gstsm.R |only 52 files changed, 1130 insertions(+), 1402 deletions(-)
Title: Create Flexible Forest Plot
Description: Create forest plot based on the layout of the data. Confidence interval in multiple columns by groups can be done easily. Editing plot, inserting/adding text, applying theme to the plot and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>
Diff between forestploter versions 0.2.1 dated 2022-09-29 and 0.2.2 dated 2022-10-19
DESCRIPTION | 6 MD5 | 65 NEWS.md | 6 R/check_errors.r | 9 R/edit_plot.R | 5 R/forest.R | 25 R/legend_grob.R | 26 R/makeci.R | 23 R/theme.R | 47 inst/doc/forestploter-intro.R | 6 inst/doc/forestploter-intro.Rmd | 772 ++++----- inst/doc/forestploter-intro.html | 161 - man/edit_plot.Rd | 5 man/forest_theme.Rd | 11 man/legend_grob.Rd | 13 man/makeci.Rd | 3 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/forest/arrow-end.svg | 14 tests/testthat/_snaps/forest/arrow-start.svg | 14 tests/testthat/_snaps/forest/ci-outside-plot.svg | 12 tests/testthat/_snaps/forest/different-sizes.svg | 14 tests/testthat/_snaps/forest/edit-plot-with-theme.svg | 32 tests/testthat/_snaps/forest/insert-text-vector.svg | 32 tests/testthat/_snaps/forest/multiple-columns-and-multi-parameters.svg | 118 - tests/testthat/_snaps/forest/multiple-columns.svg | 128 - tests/testthat/_snaps/forest/multiple-groups.svg |only tests/testthat/_snaps/forest/simple-forest-plot-with-theme.svg | 32 tests/testthat/_snaps/forest/simple-forest-plot.svg | 32 tests/testthat/_snaps/forest/summary-ci.svg | 30 tests/testthat/_snaps/forest/x-scale-log10.svg | 14 tests/testthat/_snaps/forest/x-scale-log2.svg | 14 tests/testthat/test-forest.R | 849 +++++----- tests/testthat/test-theme.R | 83 vignettes/forestploter-intro.Rmd | 772 ++++----- 34 files changed, 1763 insertions(+), 1610 deletions(-)
Title: Download Crypto Currency Data from 'CoinMarketCap' without 'API'
Description: Retrieves crypto currency information and historical prices as well as information on the exchanges they are listed on. Historical data contains daily open, high, low and close values for all crypto currencies. All data is scraped from <https://coinmarketcap.com> via their 'web-api'.
Author: Sebastian Stoeckl [aut, cre] ,
Jesse Vent [ctb]
Maintainer: Sebastian Stoeckl <sebastian.stoeckl@uni.li>
Diff between crypto2 versions 1.4.4 dated 2022-07-18 and 1.4.5 dated 2022-10-19
DESCRIPTION | 10 - MD5 | 30 ++-- NAMESPACE | 4 NEWS.md | 10 + R/crypto_global_quotes.R |only R/crypto_history.R | 8 - R/crypto_info.R | 6 R/crypto_list.R | 24 +-- R/crypto_listings.R | 2 R/globals.R | 2 README.md | 288 ++++++++++++++++++++++++++------------------ man/crypto_global_quotes.Rd |only man/crypto_history.Rd | 6 man/crypto_info.Rd | 6 man/crypto_list.Rd | 1 man/crypto_listings.Rd | 4 man/exchange_list.Rd | 11 - 17 files changed, 240 insertions(+), 172 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an updated
variant of the header-only 'Quantuccia' project (put together initially by Peter
Caspers) offering an essential subset of 'QuantLib' (and now maintained separately
for the calendaring subset). See the included file 'AUTHORS' for a full list of
contributors to both 'QuantLib' and 'Quantuccia'.
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppQuantuccia versions 0.1.0 dated 2021-10-30 and 0.1.1 dated 2022-10-19
ChangeLog | 19 ++ DESCRIPTION | 8 - MD5 | 18 +- R/init.R |only README.md | 2 build/partial.rdb |binary inst/NEWS.Rd | 9 + inst/include/RcppQuantuccia_types.h | 230 +----------------------------------- src/Makevars | 6 src/calendars.cpp |only src/ql/time/calendars/argentina.cpp | 3 11 files changed, 55 insertions(+), 240 deletions(-)
More information about RcppQuantuccia at CRAN
Permanent link
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel; the authors and contributors of QuantLib
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.0.2 dated 2022-01-21 and 0.0.3 dated 2022-10-19
ChangeLog | 30 ++++++++++++++++++++++++++++-- DESCRIPTION | 8 ++++---- MD5 | 26 +++++++++++++------------- build/partial.rdb |binary inst/NEWS.Rd | 11 ++++++++++- src/dates.cpp | 2 +- src/ql/time/calendar.cpp | 5 +++++ src/ql/time/calendar.hpp | 3 +++ src/ql/time/calendars/argentina.cpp | 3 +-- src/ql/time/calendars/australia.cpp | 6 +++--- src/ql/time/calendars/australia.hpp | 2 +- src/ql/time/calendars/saudiarabia.cpp | 17 +++++------------ src/ql/time/calendars/unitedkingdom.cpp | 2 ++ src/ql/time/calendars/unitedkingdom.hpp | 2 +- 14 files changed, 77 insertions(+), 40 deletions(-)
Title: Interface to 'pomdp-solve' for Partially Observable Markov
Decision Processes
Description: Installs an updated version of 'pomdp-solve', a program to solve Partially Observable Markov Decision Processes (POMDPs) using a variety of exact and approximate value iteration algorithms. A convenient R infrastructure is provided in package pomdp. Kaelbling, Littman and Cassandra (1998) <doi:10.1016/S0004-3702(98)00023-X>.
Author: Michael Hahsler [aut, cph, cre]
,
Anthony R. Cassandra [aut, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between pomdpSolve versions 1.0.0 dated 2022-02-08 and 1.0.1 dated 2022-10-19
DESCRIPTION | 23 MD5 | 138 +-- NEWS.md | 4 R/pomdp_solve.R | 7 README.md | 53 - build |only man/figures |only man/find_pomdp_solve.Rd | 7 src/pomdp-solve/alpha.c | 6 src/pomdp-solve/alpha.h | 6 src/pomdp-solve/belief.c | 2 src/pomdp-solve/belief.h | 2 src/pomdp-solve/command-line.c | 2 src/pomdp-solve/command-line.h | 2 src/pomdp-solve/common.c | 4 src/pomdp-solve/common.h | 4 src/pomdp-solve/config-file.c | 2 src/pomdp-solve/config-file.h | 2 src/pomdp-solve/enumeration.c | 4 src/pomdp-solve/enumeration.h | 4 src/pomdp-solve/finite-grid.c | 6 src/pomdp-solve/finite-grid.h | 2 src/pomdp-solve/global.c | 6 src/pomdp-solve/global.h | 6 src/pomdp-solve/inc-prune.c | 4 src/pomdp-solve/inc-prune.h | 4 src/pomdp-solve/laspack/rtc.c | 4 src/pomdp-solve/linear-support.c | 6 src/pomdp-solve/lp-interface.c | 4 src/pomdp-solve/lp-interface.h | 2 src/pomdp-solve/lp-solve/read.c | 2 src/pomdp-solve/mcgs.c | 2 src/pomdp-solve/mcgs.h | 2 src/pomdp-solve/mdp/imm-reward.c | 4 src/pomdp-solve/mdp/imm-reward.h | 4 src/pomdp-solve/mdp/lex.yy.c | 2 src/pomdp-solve/mdp/mdp.c | 14 src/pomdp-solve/mdp/mdp.h | 14 src/pomdp-solve/mdp/parse_err.c | 11 src/pomdp-solve/mdp/parse_err.h | 8 src/pomdp-solve/mdp/parse_hash.c | 4 src/pomdp-solve/mdp/parse_hash.h | 4 src/pomdp-solve/mdp/parser.c | 1447 ++++++++++++++++------------------ src/pomdp-solve/mdp/parser.h | 76 + src/pomdp-solve/mdp/parser.y | 38 src/pomdp-solve/mdp/scanner.c | 10 src/pomdp-solve/mdp/scanner.l | 10 src/pomdp-solve/params.c | 4 src/pomdp-solve/params.h | 2 src/pomdp-solve/pomdp-solve-options.c | 2 src/pomdp-solve/pomdp-solve-options.h | 2 src/pomdp-solve/pomdp-solve.h | 2 src/pomdp-solve/pomdp.c | 8 src/pomdp-solve/pomdp.h | 8 src/pomdp-solve/program-options.c | 2 src/pomdp-solve/program-options.h | 2 src/pomdp-solve/projection.c | 2 src/pomdp-solve/projection.h | 2 src/pomdp-solve/random.c | 8 src/pomdp-solve/random.h | 6 src/pomdp-solve/signal-handler.c | 2 src/pomdp-solve/signal-handler.h | 2 src/pomdp-solve/sim.c | 2 src/pomdp-solve/timing.c | 2 src/pomdp-solve/timing.h | 2 src/pomdp-solve/two-pass.c | 4 src/pomdp-solve/two-pass.h | 4 src/pomdp-solve/vertex-enum.c | 6 src/pomdp-solve/vertex-enum.h | 4 src/pomdp-solve/witness.c | 4 src/pomdp-solve/witness.h | 4 71 files changed, 1017 insertions(+), 1037 deletions(-)
Title: Create Interactive Web Maps of Air Pollution Data
Description: Combine the air quality data analysis methods of 'openair'
with the JavaScript 'Leaflet' (<https://leafletjs.com/>) library.
Functionality includes plotting site maps, "directional analysis"
figures such as polar plots, and air mass trajectories.
Author: Jack Davison [cre, aut],
David Carslaw [aut]
Maintainer: Jack Davison <davison.jack.jd@gmail.com>
Diff between openairmaps versions 0.4.3 dated 2022-09-13 and 0.5.0 dated 2022-10-19
DESCRIPTION | 8 MD5 | 57 ++-- NAMESPACE | 5 NEWS.md | 34 ++ R/addPolarMarkers.R | 193 +++++++------- R/addTrajPaths.R | 8 R/annulusMap.R | 98 +++++-- R/freqMap.R | 98 +++++-- R/networkMap.R | 170 +++++++++--- R/openairmaps-package.R | 1 R/percentileMap.R | 106 +++++-- R/polarMap.R | 108 +++++-- R/pollroseMap.R | 123 ++++++-- R/quickTextHTML.R | 23 - R/trajLevelMap.R | 239 ++++++++--------- R/trajMap.R | 239 +++++++++-------- R/utils-map.R | 523 +++++++++++++++++++++++--------------- R/windroseMap.R | 105 +++++-- README.md | 38 ++ man/addPolarMarkers.Rd | 14 - man/annulusMap.Rd | 53 ++- man/figures/README-networkmap.png |only man/freqMap.Rd | 53 ++- man/networkMap.Rd | 4 man/percentileMap.Rd | 61 +++- man/polarMap.Rd | 61 +++- man/pollroseMap.Rd | 78 +++-- man/trajLevelMap.Rd | 11 man/trajMap.Rd | 5 man/windroseMap.Rd | 50 ++- 30 files changed, 1688 insertions(+), 878 deletions(-)
Title: Visualizing and Analyzing Animal Track Data
Description: Contains functions to access movement data stored in 'movebank.org'
as well as tools to visualize and statistically analyze animal movement data,
among others functions to calculate dynamic Brownian Bridge Movement Models.
Move helps addressing movement ecology questions.
Author: Bart Kranstauber [aut, cre],
Marco Smolla [aut],
Anne K Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move versions 4.1.8 dated 2022-06-01 and 4.1.10 dated 2022-10-19
ChangeLog | 14 DESCRIPTION | 6 MD5 | 190 +-- R/AAClass.R | 834 +++++++------ R/Summary.R | 26 R/UDStack.R | 48 R/WebImport.R | 1575 ++++++++++++++------------ R/angle.R | 37 R/brownianbridgedyn.R | 577 +++++---- R/brownianmotionvariancedyn.R | 404 +++--- R/burst.R | 116 + R/burstId.R | 44 R/citations.R | 8 R/contour.R | 28 R/corridor.R | 153 +- R/dBGB.R | 811 +++++++------ R/data.frame.R | 149 +- R/distance.R | 28 R/emd.R | 216 +-- R/equalProj.R | 58 R/extcalc.R | 32 R/getDataRepositoryData.R | 210 +-- R/getDuplicatedTimestamps.R | 158 +- R/getMotionVariance.R | 102 - R/getVolumeUD.R | 40 R/hrBootstrap.R | 85 - R/idData.R | 26 R/interpolateTime.R | 106 - R/licenseTerms.R | 8 R/lineMidpoint.R | 86 - R/lines.R | 89 - R/move.R | 608 +++++----- R/move2ade.R | 332 +++-- R/moveStack.R | 312 ++--- R/namesIndiv.R | 13 R/nindiv.R | 26 R/nlocs.R | 28 R/outerProbability.R | 38 R/plot.R | 59 R/plotBursts.R | 45 R/points.R | 19 R/print.R | 140 +- R/raster2contour.R | 38 R/seglength.R | 37 R/sensor.R | 22 R/show.R | 12 R/spTransform.R | 71 - R/spatialLines.R | 21 R/speed.R | 33 R/split.R | 171 +- R/subset.R | 349 +++-- R/thinTrack.R | 233 ++- R/timelag.R | 31 R/timestamps.R | 49 R/trackId.R | 26 R/turnAngle.R | 42 R/unUsedRecords.R | 113 - build/vignette.rds |binary inst/doc/browseMovebank.R | 60 inst/doc/browseMovebank.Rmd | 76 + inst/doc/browseMovebank.html | 126 +- inst/doc/move.html | 19 man/getMovebankData.Rd | 3 man/getMovebankLocationData.Rd | 9 man/getMovebankNonLocationData.Rd | 10 man/getVolumeUD.Rd | 2 tests/test-all.R | 23 tests/testthat/test.angle.R | 12 tests/testthat/test.burst.R | 41 tests/testthat/test.citations.R | 29 tests/testthat/test.corridor.R | 24 tests/testthat/test.emd.R | 345 ++--- tests/testthat/test.examples.R | 2 tests/testthat/test.extentCalc.R | 55 tests/testthat/test.getDataRepositoryData.R | 98 - tests/testthat/test.getDuplicatedTimestamps.R | 91 - tests/testthat/test.getMotionVariance.R | 46 tests/testthat/test.getVolumeUD.R | 48 tests/testthat/test.idData.R | 22 tests/testthat/test.interpolateTime.R | 63 - tests/testthat/test.license.R | 16 tests/testthat/test.measures.R | 45 tests/testthat/test.move.R | 405 +++--- tests/testthat/test.moveAde.R | 6 tests/testthat/test.moveStack.R | 152 +- tests/testthat/test.print.R | 19 tests/testthat/test.smallFunctions.R | 121 - tests/testthat/test.spTransform.R | 19 tests/testthat/test.storedData.R | 21 tests/testthat/test.subSet.R | 200 +-- tests/testthat/test.thin.R | 28 tests/testthat/test.timestamps.R | 16 tests/testthat/test.turnAngle.R | 26 tests/testthat/test.udFunctions.R | 40 tests/testthat/test.unUsed.R | 55 vignettes/browseMovebank.Rmd | 76 + 96 files changed, 6400 insertions(+), 5181 deletions(-)
Title: Interactive Tutorials for R
Description: Create interactive tutorials using R Markdown. Use a
combination of narrative, figures, videos, exercises, and quizzes to
create self-paced tutorials for learning about R and R packages.
Author: Garrick Aden-Buie [aut, cre] ,
Barret Schloerke [aut] ,
JJ Allaire [aut, ccp],
Alexander Rossell Hayes [ctb] ,
Nischal Shrestha [ctb] ,
Angela Li [ctb] ,
RStudio [cph, fnd],
Ajax.org B.V. [ctb, cph] ,
Zeno Rocha [ctb, cph] ,
Nick Payne [ctb, cph] ,
J [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@rstudio.com>
Diff between learnr versions 0.11.0 dated 2022-10-16 and 0.11.1 dated 2022-10-19
DESCRIPTION | 6 MD5 | 26 ++- NEWS.md | 4 R/tutorial-state.R | 25 ++- build/vignette.rds |binary inst/tutorials/setup-chunks/setup-chunks.Rmd | 69 ++++++-- man/get_tutorial_info.Rd | 25 ++- man/rmd-fragments/learnr-install.Rmd | 12 - man/rmd-fragments/learnr-overview.Rmd | 2 tests/testthat/test-exercise.R | 77 ++++++++++ tests/testthat/test-knitr-hooks.R | 2 tests/testthat/tutorials/basic.html |only tests/testthat/tutorials/hint-copy/hint-copy.html |only tests/testthat/tutorials/hint-div/hint-div.html |only tests/testthat/tutorials/hint-div/hint-next.html |only tests/testthat/tutorials/hint-next/hint-next.html |only tests/testthat/tutorials/knitr-hooks_empty-exercise/duplicate-label.html |only 17 files changed, 203 insertions(+), 45 deletions(-)
Title: Seismic Time Series Analysis Tools
Description: Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.
Author: Jonathan M. Lees [aut, cre],
Jake Anderson [ctb],
Leonard Lisapaly [ctb],
Dave Harris [aut, cph]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between RSEIS versions 4.1-1 dated 2022-05-16 and 4.1-4 dated 2022-10-19
DESCRIPTION | 8 ++-- MD5 | 44 ++++++++++++++------------ NEWS | 14 ++++++++ R/DELpix.R |only R/JustF.R |only R/STALTA.R |only R/wigFUNCS.R | 3 + man/DOsgram.Rd | 2 - man/MTM.drive.Rd | 2 - man/MTMdisp.Rd | 3 + man/MTMgabor.Rd | 2 - man/STALTA.Rd |only man/YPIX.Rd | 10 +++++- man/doGABOR.AR.Rd | 2 - man/doGABOR.MTM.Rd | 2 - man/evolMTM.Rd | 2 - man/get.slepians.Rd | 2 - man/mtapspec.Rd | 2 - man/plt.MTM0.Rd | 2 - man/save.wpix.Rd | 2 - src/ARAIC.c | 4 +- src/GetCornerFreq.c | 16 ++++----- src/LLNfilt.c | 86 +++++++++++++++++++--------------------------------- src/MTAPSRC.c | 30 ++++-------------- src/jpiki.c | 3 - 25 files changed, 115 insertions(+), 126 deletions(-)
More information about PolycrossDesigns at CRAN
Permanent link
Title: Time-Frequency Analysis of 1-D Signals
Description: A set of R functions which provide an
environment for the Time-Frequency analysis of 1-D signals (and
especially for the wavelet and Gabor transforms of noisy
signals). It was originally written for Splus by Rene Carmona,
Bruno Torresani, and Wen L. Hwang, first at the University of
California at Irvine and then at Princeton University. Credit
should also be given to Andrea Wang whose functions on the
dyadic wavelet transform are included. Rwave is based on the
book: "Practical Time-Frequency Analysis: Gabor and Wavelet
Transforms with an Implementation in S", by Rene Carmona, Wen
L. Hwang and Bruno Torresani (1998, eBook ISBN:978008053942), Academic Press.
Author: Rene Carmona [aut],
Bruno Torresani [aut],
Brandon Whitcher [ctb],
Andrea Wang [ctb],
Wen-Liang Hwang [ctb],
Robert Alberts [ctb],
Jonathan M. Lees [ctb, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between Rwave versions 2.6-0 dated 2021-09-29 and 2.6-4 dated 2022-10-19
DESCRIPTION | 8 ++--- MD5 | 54 ++++++++++++++++++------------------ man/DOG.Rd | 8 ++--- man/cgt.Rd | 2 - man/cwt.Rd | 13 ++++++-- man/cwtimage.Rd | 4 +- man/cwtpolar.Rd | 2 - src/Swave.h | 19 ++++++------ src/bee_annealing.c | 4 +- src/choldc.c | 6 ---- src/crazy_family.c | 2 - src/cwt_phase.c | 2 - src/dau.c | 72 ++++++++++++------------------------------------ src/dau_wave.c | 21 ++++---------- src/dwfilter.c | 78 +++++++++++----------------------------------------- src/dwinverse.c | 10 +----- src/dwkernel.c | 17 ++--------- src/dwvector.c | 28 +++++++----------- src/fft.c | 7 ---- src/multiply.c | 4 -- src/pca_climbers.c | 4 +- src/pca_family.c | 5 --- src/randomwalker.c | 2 - src/snakesub.c | 8 +---- src/splsnake.c | 5 --- src/svd.c | 2 - src/util.c | 3 -- src/wv.c | 2 - 28 files changed, 135 insertions(+), 257 deletions(-)
Title: Dynamic Trees for Learning and Design
Description: Inference by sequential Monte Carlo for
dynamic tree regression and classification models
with hooks provided for sequential design and optimization,
fully online learning with drift, variable selection, and
sensitivity analysis of inputs. Illustrative
examples from the original dynamic trees paper
(Gramacy, Taddy & Polson (2011); <doi:10.1198/jasa.2011.ap09769>) are facilitated
by demos in the package; see demo(package="dynaTree").
Author: Robert B. Gramacy <rbg@vt.edu>, Matt A. Taddy and Christoforos Anagnostopoulos
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between dynaTree versions 1.2-13 dated 2022-06-13 and 1.2-14 dated 2022-10-19
ChangeLog | 8 ++++- DESCRIPTION | 8 ++--- MD5 | 16 +++++------ demo/class2d.R | 2 - man/dynaTree.Rd | 6 ++-- man/relevance.dynaTree.Rd | 2 - man/sens.dynaTree.Rd | 2 - src/init.c | 2 - src/linalg.c | 65 ++++++++++++---------------------------------- 9 files changed, 44 insertions(+), 67 deletions(-)
Title: Semi-Automated Rasch Analysis
Description: Performs Rasch analysis (semi-)automatically, which has been shown to be comparable with the standard Rasch analysis (Feri Wijayanto et al. (2021) <doi:10.1111/bmsp.12218>, Feri Wijayanto et al. (2022) <doi:10.3758/s13428-022-01947-9>, Feri Wijayanto et al. (2022) <doi:10.1177/01466216221125178>).
Author: Feri Wijayanto [aut, cre],
Ioan Gabriel Bucur [aut],
Perry Groot [aut],
Tom Heskes [aut],
Karlien Mul [ctb],
Baziel G.M. van Engelen [ctb]
Maintainer: Feri Wijayanto <f.wijayanto@cs.ru.nl>
Diff between autoRasch versions 0.1.5 dated 2022-02-28 and 0.2.2 dated 2022-10-19
DESCRIPTION | 10 - MD5 | 64 ++++----- NAMESPACE | 3 R/RcppExports.R | 8 - R/autoRasch.R | 9 - R/autoRasch_options.R | 23 ++- R/compute_score.R | 30 ++-- R/data_generator.R | 19 ++ R/gpcm.R | 2 R/itemfit.R | 38 ++++- R/loglik_function.R | 22 ++- R/pcm.R | 20 +-- R/pcmdif.R | 11 - R/pjmle.R | 27 +++- R/plot_models.R | 58 ++++++-- R/reliability.R | 21 --- R/stepwise_search.R | 188 +++++++++++++++------------- R/unidimensionality.R | 48 +++---- inst/doc/models.html | 309 ++++++++++++++++++++++++++++++++++++++++------- inst/doc/search.R | 12 - inst/doc/search.Rmd | 14 +- inst/doc/search.html | 302 +++++++++++++++++++++++++++++++++++++++------ man/autoRaschOptions.Rd | 5 man/compute_score.Rd | 12 - man/fit.Rd | 4 man/ld.Rd | 10 + man/pcm.Rd | 8 - man/pcm_dif.Rd | 6 man/search.Rd | 24 +-- man/unidimensionality.Rd | 14 -- src/RcppExports.cpp | 18 +- src/loglik_function.cpp | 43 +++++- vignettes/search.Rmd | 14 +- 33 files changed, 967 insertions(+), 429 deletions(-)
Title: Regression Analysis Linear and Nonlinear for Agriculture
Description: Linear and nonlinear regression analysis common in agricultural science articles (Archontoulis & Miguez (2015). <doi:10.2134/agronj2012.0506>). The package includes polynomial, exponential, gaussian, logistic, logarithmic, segmented, non-parametric models, among others. The functions return the model coefficients and their respective p values, coefficient of determination, root mean square error, AIC, BIC, as well as graphs with the equations automatically.
Author: Gabriel Danilo Shimizu [aut, cre]
,
Leandro Simoes Azeredo Goncalves [aut, ctb]
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroReg versions 1.2.6 dated 2022-07-11 and 1.2.7 dated 2022-10-19
DESCRIPTION | 10 +- MD5 | 202 +++++++++++++++++++++--------------------- NAMESPACE | 3 NEWS.md | 10 ++ R/AM_analysis.R | 10 +- R/BC_analysis.R | 4 R/BIEXP_analysis.R | 4 R/CD_analysis.R | 4 R/LL_analysis.R | 4 R/LM13_analysis.R | 4 R/LM13i_analysis.R | 4 R/LM23_analysis.R | 4 R/LM23i_analysis.R | 4 R/LM2i3_analysis.R | 4 R/LM_analysis.R | 12 +- R/LM_i_analysis.R | 14 +- R/LNplt_analysis.R | 4 R/LOG2_analysis.R | 4 R/LOG_analysis.R | 4 R/MM_analysis.R | 4 R/N_analysis.R | 4 R/PAGE_analysis.R | 4 R/SH_function.R | 4 R/VB_analysis.R | 4 R/VG_analysis.R | 4 R/adjust_scale.R |only R/adjust_scale_x.R |only R/adjust_scale_y.R |only R/asymptotic_analysis.R | 4 R/asymptotic_i_analysis.R | 4 R/asymptotic_i_sup_analysis.R | 4 R/asymptotic_sup_analysis.R | 10 +- R/beta_analysis.R | 4 R/gaussian_analysis.R | 4 R/gompertz_analysis.R | 4 R/hill_analysis.R | 4 R/linearlinear_analysis.R | 4 R/loess_analysis.R | 4 R/logistic_analysis.R | 4 R/lorentz_analysis.R | 4 R/midilli_analysis.R | 4 R/midillim_analysis.R | 4 R/mitscherlich_analysis.R | 4 R/newton_analysis.R | 4 R/peleg_analysis.R | 4 R/plot_arrange.R | 24 ++-- R/pltLN_analysis.R | 4 R/pltQD_analysis.R | 4 R/potential_analysis.R | 4 R/quadraticplateau_analysis.R | 10 +- R/regression.R | 164 +++++++++++++++++----------------- R/thompson_analysis.R | 4 R/valcam_analysis.R | 4 R/weibull_analysis.R | 4 R/yieldloss_analysis.R | 4 man/AM.Rd | 3 man/BC.Rd | 3 man/CD.Rd | 3 man/GP.Rd | 3 man/LL.Rd | 3 man/LM.Rd | 3 man/LM13.Rd | 3 man/LM13i.Rd | 3 man/LM23.Rd | 3 man/LM23i.Rd | 3 man/LM2i3.Rd | 3 man/LM_i.Rd | 5 - man/LOG.Rd | 3 man/LOG2.Rd | 3 man/MM.Rd | 3 man/Nreg.Rd | 3 man/PAGE.Rd | 3 man/SH.Rd | 3 man/VB.Rd | 3 man/VG.Rd | 3 man/adjust_scale.Rd |only man/adjust_scale_x.Rd |only man/adjust_scale_y.Rd |only man/asymptotic.Rd | 3 man/asymptotic_i.Rd | 3 man/asymptotic_ineg.Rd | 3 man/asymptotic_neg.Rd | 3 man/beta_reg.Rd | 3 man/biexponential.Rd | 3 man/gaussianreg.Rd | 3 man/hill.Rd | 3 man/linear.linear.Rd | 3 man/linear.plateau.Rd | 3 man/loessreg.Rd | 3 man/logistic.Rd | 3 man/lorentz.Rd | 3 man/midilli.Rd | 3 man/midillim.Rd | 3 man/mitscherlich.Rd | 3 man/newton.Rd | 3 man/peleg.Rd | 3 man/plateau.linear.Rd | 3 man/plateau.quadratic.Rd | 3 man/potential.Rd | 3 man/quadratic.plateau.Rd | 3 man/regression.Rd | 8 + man/thompson.Rd | 3 man/valcam.Rd | 3 man/weibull.Rd | 3 man/yieldloss.Rd | 3 105 files changed, 520 insertions(+), 261 deletions(-)
Title: Management Strategy Evaluation Toolkit
Description: Development, simulation testing, and implementation of management procedures for fisheries
(see Carruthers & Hordyk (2018) <doi:10.1111/2041-210X.13081>).
Author: Adrian Hordyk [aut, cre],
Quang Huynh [aut],
Tom Carruthers [aut],
Chris Grandin [ctb]
Maintainer: Adrian Hordyk <adrian@bluematterscience.com>
Diff between MSEtool versions 3.5.0 dated 2022-06-07 and 3.6.0 dated 2022-10-19
MSEtool-3.5.0/MSEtool/R/Data_documentation.r |only MSEtool-3.5.0/MSEtool/tests |only MSEtool-3.6.0/MSEtool/DESCRIPTION | 8 MSEtool-3.6.0/MSEtool/MD5 | 194 ++---- MSEtool-3.6.0/MSEtool/NAMESPACE | 3 MSEtool-3.6.0/MSEtool/NEWS.md | 24 MSEtool-3.6.0/MSEtool/R/ASAP2OM.R | 20 MSEtool-3.6.0/MSEtool/R/Class_definitions.R | 6 MSEtool-3.6.0/MSEtool/R/DFO.R | 8 MSEtool-3.6.0/MSEtool/R/Data2csv.R | 2 MSEtool-3.6.0/MSEtool/R/Data_Functions.R | 231 +++++-- MSEtool-3.6.0/MSEtool/R/Data_documentation.R |only MSEtool-3.6.0/MSEtool/R/Data_fit_index.R | 7 MSEtool-3.6.0/MSEtool/R/Data_make_update.R | 116 +-- MSEtool-3.6.0/MSEtool/R/MMSE_Object.r | 56 + MSEtool-3.6.0/MSEtool/R/MSE_functions.R | 706 ++++++----------------- MSEtool-3.6.0/MSEtool/R/Misc_Exported.R | 14 MSEtool-3.6.0/MSEtool/R/Misc_Internal.R | 177 +++++ MSEtool-3.6.0/MSEtool/R/OM_functions.R | 33 - MSEtool-3.6.0/MSEtool/R/SS2MOM_plots.R | 24 MSEtool-3.6.0/MSEtool/R/SS2OM.R | 172 +++-- MSEtool-3.6.0/MSEtool/R/SSinternal.R | 2 MSEtool-3.6.0/MSEtool/R/SampleOM.R | 61 + MSEtool-3.6.0/MSEtool/R/VPA2OM.R | 164 +++-- MSEtool-3.6.0/MSEtool/R/multiMSE.R | 675 +++++++++++++++------ MSEtool-3.6.0/MSEtool/R/multiMSE_internal.R | 12 MSEtool-3.6.0/MSEtool/R/popdyn.R | 72 ++ MSEtool-3.6.0/MSEtool/R/popdyn_MICE.R | 13 MSEtool-3.6.0/MSEtool/R/runMSE.R | 198 ++++-- MSEtool-3.6.0/MSEtool/R/sysdata.rda |binary MSEtool-3.6.0/MSEtool/build/partial.rdb |binary MSEtool-3.6.0/MSEtool/data/LHdatabase.rda |binary MSEtool-3.6.0/MSEtool/data/SimulatedData.rda |binary MSEtool-3.6.0/MSEtool/data/Taxa_Table.rda |only MSEtool-3.6.0/MSEtool/man/Assess2MOM.Rd | 4 MSEtool-3.6.0/MSEtool/man/Assess2OM.Rd | 1 MSEtool-3.6.0/MSEtool/man/Can.Rd | 10 MSEtool-3.6.0/MSEtool/man/CheckOM.Rd | 48 - MSEtool-3.6.0/MSEtool/man/DFO_plot.Rd | 2 MSEtool-3.6.0/MSEtool/man/DFO_spider.Rd | 2 MSEtool-3.6.0/MSEtool/man/Data-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/Data2csv.Rd | 2 MSEtool-3.6.0/MSEtool/man/DataDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/DataSlots.Rd | 2 MSEtool-3.6.0/MSEtool/man/FMSYref.Rd | 12 MSEtool-3.6.0/MSEtool/man/Fleet-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/FleetDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/HistDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/Imp-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/ImpDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/Input.Rd | 2 MSEtool-3.6.0/MSEtool/man/LH2OM.Rd | 6 MSEtool-3.6.0/MSEtool/man/LHdatabase.Rd | 2 MSEtool-3.6.0/MSEtool/man/Lag_Data.Rd |only MSEtool-3.6.0/MSEtool/man/MOM-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/MSEDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/OM-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/OMDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/Obs-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/ObsDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/PMLimit.Rd | 6 MSEtool-3.6.0/MSEtool/man/ReqData.Rd | 2 MSEtool-3.6.0/MSEtool/man/Required.Rd | 7 MSEtool-3.6.0/MSEtool/man/SS2MOM.Rd | 8 MSEtool-3.6.0/MSEtool/man/SimulatedData.Rd | 2 MSEtool-3.6.0/MSEtool/man/Stock-class-objects.Rd | 2 MSEtool-3.6.0/MSEtool/man/StockDescription.Rd | 2 MSEtool-3.6.0/MSEtool/man/TAC.Rd | 2 MSEtool-3.6.0/MSEtool/man/Taxa_Table.Rd |only MSEtool-3.6.0/MSEtool/man/TradePlot.Rd | 10 MSEtool-3.6.0/MSEtool/man/Turing.Rd | 4 MSEtool-3.6.0/MSEtool/man/alphaconv.Rd | 6 MSEtool-3.6.0/MSEtool/man/avail.Rd | 2 MSEtool-3.6.0/MSEtool/man/checkMSE.Rd | 25 MSEtool-3.6.0/MSEtool/man/genSizeCompWrap.Rd | 4 MSEtool-3.6.0/MSEtool/man/getnIVs.Rd | 38 - MSEtool-3.6.0/MSEtool/man/hconv.Rd | 10 MSEtool-3.6.0/MSEtool/man/iSCAM.Rd | 18 MSEtool-3.6.0/MSEtool/man/joinData.Rd | 3 MSEtool-3.6.0/MSEtool/man/multiDataS.Rd | 4 MSEtool-3.6.0/MSEtool/man/multiMSE.Rd | 21 MSEtool-3.6.0/MSEtool/man/plot.MOM.Rd | 44 - MSEtool-3.6.0/MSEtool/man/plotRel.Rd | 54 - MSEtool-3.6.0/MSEtool/man/runCOSEWIC.Rd | 18 MSEtool-3.6.0/MSEtool/man/runMSE.Rd | 45 + MSEtool-3.6.0/MSEtool/man/sample_steepness2.Rd | 6 MSEtool-3.6.0/MSEtool/man/sdconv.Rd | 6 MSEtool-3.6.0/MSEtool/man/simCAL.Rd | 6 MSEtool-3.6.0/MSEtool/man/simmov.Rd | 6 MSEtool-3.6.0/MSEtool/man/summary-MMSE.Rd |only MSEtool-3.6.0/MSEtool/man/trlnorm.Rd | 8 91 files changed, 2077 insertions(+), 1409 deletions(-)
Title: Interpreting Glucose Data from Continuous Glucose Monitors
Description: Implements a wide range of metrics for measuring glucose control and glucose variability based on continuous glucose monitoring data. The list of implemented metrics is summarized in Rodbard (2009) <doi:10.1089/dia.2009.0015>. Additional visualization tools include time-series plots, lasagna plots and ambulatory glucose profile report.
Author: Steve Broll [aut],
David Buchanan [aut],
Elizabeth Chun [aut],
John Muschelli [aut] ,
Nathaniel Fernandes [aut],
Jung Hoon Seo [aut],
Johnathan Shih [aut],
Jacek Urbanek [aut],
John Schwenck [aut],
Marielle Hicban [ctb],
Mary Martin [ctb],
Pratik Pat [...truncated...]
Maintainer: Irina Gaynanova <irinag@stat.tamu.edu>
Diff between iglu versions 3.3.0 dated 2021-12-21 and 3.3.2 dated 2022-10-19
iglu-3.3.0/iglu/R/Untitled.R |only iglu-3.3.0/iglu/inst/shiny_iglu/rsconnect/shinyapps.io/irinagain |only iglu-3.3.2/iglu/DESCRIPTION | 11 iglu-3.3.2/iglu/MD5 | 93 - iglu-3.3.2/iglu/NAMESPACE | 1 iglu-3.3.2/iglu/NEWS.md | 10 iglu-3.3.2/iglu/R/adrr.R | 5 iglu-3.3.2/iglu/R/cogi.r | 1 iglu-3.3.2/iglu/R/data.R | 13 iglu-3.3.2/iglu/R/epicalc_profile.R | 4 iglu-3.3.2/iglu/R/episode_calculation.R | 227 +-- iglu-3.3.2/iglu/R/grade_eugly.R | 1 iglu-3.3.2/iglu/R/grade_hypo.R | 1 iglu-3.3.2/iglu/R/gvp.r | 2 iglu-3.3.2/iglu/R/meal_metrics.R |only iglu-3.3.2/iglu/R/median_glu.R | 1 iglu-3.3.2/iglu/R/utils.R | 7 iglu-3.3.2/iglu/README.md | 64 iglu-3.3.2/iglu/build/partial.rdb |binary iglu-3.3.2/iglu/build/vignette.rds |binary iglu-3.3.2/iglu/data/example_meal.rda |only iglu-3.3.2/iglu/inst/doc/AGP_and_Episodes.html | 156 +- iglu-3.3.2/iglu/inst/doc/MAGE.html | 559 ++++++-- iglu-3.3.2/iglu/inst/doc/iglu.html | 649 ++++++---- iglu-3.3.2/iglu/inst/doc/lasagna_plots.html | 193 +- iglu-3.3.2/iglu/inst/doc/metrics_list.Rmd | 3 iglu-3.3.2/iglu/inst/doc/metrics_list.html | 172 +- iglu-3.3.2/iglu/inst/shiny_iglu/server.R | 3 iglu-3.3.2/iglu/inst/shiny_iglu/ui.R | 2 iglu-3.3.2/iglu/man/epicalc_profile.Rd | 5 iglu-3.3.2/iglu/man/episode_calculation.Rd | 2 iglu-3.3.2/iglu/man/example_meal.Rd |only iglu-3.3.2/iglu/man/figures/README-unnamed-chunk-3-2.png |binary iglu-3.3.2/iglu/man/grade_eugly.Rd | 2 iglu-3.3.2/iglu/man/grade_hypo.Rd | 2 iglu-3.3.2/iglu/man/meal_metrics.Rd |only iglu-3.3.2/iglu/man/median_glu.Rd | 2 iglu-3.3.2/iglu/vignettes/iglu_files |only iglu-3.3.2/iglu/vignettes/lasagna_plots_files |only iglu-3.3.2/iglu/vignettes/metrics_list.Rmd | 3 40 files changed, 1470 insertions(+), 724 deletions(-)
Title: Tools for Environmental Analyses, Ecotoxicology and Various R
Functions
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 5.6 dated 2022-09-06 and 5.7 dated 2022-10-19
DESCRIPTION | 8 - MD5 | 20 ++-- NEWS | 12 ++ R/HelpersMG-package.R | 8 - R/cutter.R | 23 +++- R/dSnbinom.R | 233 +++++++++++++++++++++++++++++++++++++++++------ R/rSnbinom.R | 5 - inst/shiny/compare/ui.R | 4 inst/shiny/cutter/ui.R | 4 man/HelpersMG-package.Rd | 8 - man/dSnbinom.Rd | 130 +++++++++++++++++++++++--- 11 files changed, 378 insertions(+), 77 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-02-28 1.0.0
Title: Minimal Interface of the C++ 'MixtComp' Library for Mixture
Models with Heterogeneous and (Partially) Missing Data
Description: Mixture Composer <https://github.com/modal-inria/MixtComp> is a project to build mixture models with
heterogeneous data sets and partially missing data management.
It includes models for real, categorical, counting, functional and ranking data.
This package contains the minimal R interface of the C++ 'MixtComp' library.
Author: Vincent Kubicki [aut],
Christophe Biernacki [aut],
Quentin Grimonprez [aut, cre],
Serge Iovleff [ctb],
Matthieu Marbac-Lourdelle [ctb],
Étienne Goffinet [ctb],
Patrick Wieschollek [ctb] ,
Tobias Wood [ctb] ,
Julien Vandaele [ctb]
Maintainer: Quentin Grimonprez <quentingrim@yahoo.fr>
Diff between RMixtCompIO versions 4.0.7 dated 2022-01-17 and 4.0.8 dated 2022-10-19
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NEWS | 5 +++++ src/lib/Composer/MixtureComposer.h | 2 +- src/optim/include/cppoptlib/linesearch/morethuente.h | 4 ++-- 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Particle Learning of Gaussian Processes
Description: Sequential Monte Carlo (SMC) inference for fully Bayesian
Gaussian process (GP) regression and classification models by
particle learning (PL) following Gramacy & Polson (2011) <arXiv:0909.5262>.
The sequential nature of inference
and the active learning (AL) hooks provided facilitate thrifty
sequential design (by entropy) and optimization
(by improvement) for classification and
regression models, respectively.
This package essentially provides a generic
PL interface, and functions (arguments to the interface) which
implement the GP models and AL heuristics. Functions for
a special, linked, regression/classification GP model and
an integrated expected conditional improvement (IECI) statistic
provide for optimization in the presence of unknown constraints.
Separable and isotropic Gaussian, and single-index correlation
functions are supported.
See the examples section of ?plgp and demo(package="plgp")
for an index of demos.
Author: Robert B. Gramacy <rbg@vt.edu>
Maintainer: Robert B. Gramacy <rbg@vt.edu>
Diff between plgp versions 1.1-11 dated 2022-06-10 and 1.1-12 dated 2022-10-19
ChangeLog | 6 +++++ DESCRIPTION | 8 +++---- MD5 | 6 ++--- src/linalg.c | 65 ++++++++++++++++------------------------------------------- 4 files changed, 31 insertions(+), 54 deletions(-)
Title: Render Markdown with the C Library 'Sundown'
Description: Provides R bindings to the 'Sundown' Markdown rendering library
(<https://github.com/vmg/sundown>). Markdown is a plain-text formatting
syntax that can be converted to 'XHTML' or other formats. See
<https://en.wikipedia.org/wiki/Markdown> for more information about Markdown.
Author: JJ Allaire [aut],
Jeffrey Horner [aut],
Yihui Xie [aut, cre] ,
Henrik Bengtsson [ctb],
Jim Hester [ctb],
Yixuan Qiu [ctb],
Kohske Takahashi [ctb],
Adam November [ctb],
Nacho Caballero [ctb],
Jeroen Ooms [ctb],
Thomas Leeper [ctb],
Joe Cheng [ctb],
An [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between markdown versions 1.1 dated 2019-08-07 and 1.2 dated 2022-10-19
markdown-1.1/markdown/NEWS |only markdown-1.2/markdown/DESCRIPTION | 10 +-- markdown-1.2/markdown/MD5 | 54 +++++++++--------- markdown-1.2/markdown/NEWS.md |only markdown-1.2/markdown/R/markdown-package.R | 2 markdown-1.2/markdown/R/renderMarkdown.R | 8 +- markdown-1.2/markdown/R/rpubsUpload.R | 4 - markdown-1.2/markdown/README.md | 9 +-- markdown-1.2/markdown/build/vignette.rds |binary markdown-1.2/markdown/inst/NOTICE | 2 markdown-1.2/markdown/inst/doc/markdown-examples.R | 18 +++--- markdown-1.2/markdown/inst/doc/markdown-examples.html | 26 ++++---- markdown-1.2/markdown/inst/doc/markdown-output.R | 20 +++--- markdown-1.2/markdown/inst/doc/markdown-output.html | 26 ++++---- markdown-1.2/markdown/inst/examples/HTMLOptions.R | 8 +- markdown-1.2/markdown/inst/include/markdown_rstubs.c | 14 ++-- markdown-1.2/markdown/inst/include/markdown_rstubs.h | 8 +- markdown-1.2/markdown/man/markdown.Rd | 3 - markdown-1.2/markdown/man/markdownExtensions.Rd | 16 ++--- markdown-1.2/markdown/man/markdownHTMLOptions.Rd | 20 +++--- markdown-1.2/markdown/man/markdownToHTML.Rd | 12 +++- markdown-1.2/markdown/man/renderMarkdown.Rd | 14 +++- markdown-1.2/markdown/man/rpubsUpload.Rd | 11 ++- markdown-1.2/markdown/man/smartypants.Rd | 4 - markdown-1.2/markdown/src/Rinit.c | 4 - markdown-1.2/markdown/src/Rmarkdown.c | 20 +++--- markdown-1.2/markdown/src/Rmarkdown.h | 12 ++-- markdown-1.2/markdown/src/html_blocks.h | 12 ++-- markdown-1.2/markdown/tests/tests.Rout.save | 26 ++++---- 29 files changed, 190 insertions(+), 173 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut, cre] ,
Kurt Hornik [aut] ,
Artifex Software, Inc. [ctb, cph]
Maintainer: Ingo Feinerer <feinerer@logic.at>
Diff between tm versions 0.7-8 dated 2020-11-18 and 0.7-9 dated 2022-10-19
DESCRIPTION | 10 +++++----- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 2 ++ R/matrix.R | 4 ++++ build/vignette.rds |binary data/acq.rda |binary data/crude.rda |binary inst/CITATION | 7 ++----- inst/NEWS.Rd | 9 ++++++++- inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary man/acq.Rd | 18 +++++++++--------- man/crude.Rd | 18 +++++++++--------- man/matrix.Rd | 9 +++++---- man/readReut21578XML.Rd | 18 +++++++++--------- src/remove.c | 2 +- src/scan.c | 4 ++-- 17 files changed, 72 insertions(+), 61 deletions(-)
Title: Relational Data Modeler
Description: The aim of this package is to manipulate relational
data models in R.
It provides functions to create, modify and export data models
in json format.
It also allows importing models created
with 'MySQL Workbench' (<https://www.mysql.com/products/workbench/>).
These functions are accessible through a graphical user
interface made with 'shiny'.
Constraints such as types, keys, uniqueness and mandatory fields are
automatically checked and corrected when editing a model.
Finally, real data can be confronted to a model to check their compatibility.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between ReDaMoR versions 0.6.5 dated 2022-09-05 and 0.7.1 dated 2022-10-19
DESCRIPTION | 6 +- MD5 | 27 +++++----- NAMESPACE | 1 R/RelDataModel.R | 58 +++++++++++++++++++---- R/RelTableModel.R | 83 ++++++++++++++++++++------------- R/df_to_model.R | 36 +++++++------- R/json_data_model.R | 2 R/model_relational_data.R | 83 +++++++++++++++++++++++++++++++-- inst/Documentation/rintrojs-steps.json | 20 +++++++ inst/doc/ReDaMoR.html | 62 ++++++++++++------------ inst/pkgdown.yml | 2 inst/www/interactions.js | 12 ++++ man/RelTableModel.Rd | 42 +++++++++++----- man/copy_fields.Rd |only man/df_to_model.Rd | 6 +- 15 files changed, 310 insertions(+), 130 deletions(-)
Title: Mesh from Polygon Soup
Description: Allows to get a consistent 3D mesh from a polygon soup, that
is an unorganized set of polygons. The mesh can be triangulated and
its exterior edges are computed.
Author: Stephane Laurent [aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between PolygonSoup versions 1.0.0 dated 2022-10-18 and 1.0.1 dated 2022-10-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ src/Makevars.in | 2 +- src/Makevars.win | 2 +- 5 files changed, 15 insertions(+), 10 deletions(-)
Title: Panel Vector Autoregression
Description: We extend two general methods of moment estimators to panel vector
autoregression models (PVAR) with p lags of endogenous variables, predetermined
and strictly exogenous variables. This general PVAR model contains the first
difference GMM estimator by Holtz-Eakin et al. (1988) <doi:10.2307/1913103>,
Arellano and Bond (1991) <doi:10.2307/2297968> and the system GMM estimator
by Blundell and Bond (1998) <doi:10.1016/S0304-4076(98)00009-8>. We also
provide specification tests (Hansen overidentification test, lag selection
criterion and stability test of the PVAR polynomial) and classical structural
analysis for PVAR models such as orthogonal and generalized impulse response
functions, bootstrapped confidence intervals for impulse response analysis and
forecast error variance decompositions.
Author: Michael Sigmund [aut],
Robert Ferstl [aut, cre]
Maintainer: Robert Ferstl <robert.ferstl@ur.de>
Diff between panelvar versions 0.5.3 dated 2021-01-27 and 0.5.4 dated 2022-10-19
DESCRIPTION | 10 MD5 | 53 NAMESPACE | 11 R/Endo_Lmin_Lmax_transition_matrix.R | 212 +- R/Predetermined_Lmin_Lmax_transition_matrix.R | 186 +- R/datafiles.R | 196 +- R/helper_functions.R | 1550 +++++++++-------- R/panel_lag.R | 198 +- R/pca_transformation_matrix.R | 316 +-- R/pvar-methods.R | 1575 +++++++++-------- R/pvar.R | 2297 +++++++++++++------------- R/pvar_fe_ols.R | 434 ++-- R/pvarfeols-methods.R | 722 ++++---- R/pvarhk-methods.R | 276 +-- R/pvarhk.R | 606 +++--- R/rows_Q.R | 258 +- R/zzz.R | 10 build/partial.rdb |binary inst/CITATION | 18 inst/bootstrap_irf.pvarfeols.R |only inst/predict_resids_level.R |only man/Dahlberg.Rd | 2 man/bootstrap_irf.Rd | 28 man/knit_print.pvarfeols.Rd | 2 man/knit_print.pvarhk.Rd | 2 man/knit_print.summary.pvarfeols.Rd | 2 man/knit_print.summary.pvarhk.Rd | 2 man/pvargmm.Rd | 9 man/residuals_level.Rd |only 29 files changed, 4632 insertions(+), 4343 deletions(-)
Title: Exploratory Analyses for the Phylogenetic Comparative Method
Description: Multivariate tools to analyze comparative data, i.e. a phylogeny
and some traits measured for each taxa.
Author: Thibaut Jombart <t.jombart@imperial.ac.uk>, Stephane Dray
<stephane.dray@univ-lyon1.fr>, Anders Ellern Bilgrau <abilgrau@math.aau.dk>
Maintainer: Stephane Dray <stephane.dray@univ-lyon1.fr>
Diff between adephylo versions 1.1-11 dated 2017-12-18 and 1.1-13 dated 2022-10-19
DESCRIPTION | 10 ++-- MD5 | 82 ++++++++++++++++----------------- R/orthobasis.R | 4 - R/partition.R | 2 build/vignette.rds |binary inst/doc/adephylo.R | 1 inst/doc/adephylo.pdf |binary man/abouheif.Rd | 13 ++++- man/bullseye.Rd | 25 ++++++++-- man/carni19.Rd | 6 +- man/carni70.Rd | 6 +- man/dibas.Rd | 19 ++++--- man/distRoot.Rd | 7 ++ man/distTips.Rd | 8 ++- man/lizards.Rd | 8 ++- man/maples.Rd | 6 +- man/mjrochet.Rd | 6 +- man/orthobasis.Rd | 14 ++++- man/orthogram.Rd | 18 ++++++- man/palm.Rd | 6 +- man/ppca.Rd | 23 +++++---- man/procella.Rd | 6 +- man/proxTips.Rd | 14 ++++- man/sp.tips.Rd | 3 - man/table.phylo4d.Rd | 35 ++++++++++---- man/tithonia.Rd | 6 +- man/treePart.Rd | 2 man/ungulates.Rd | 6 +- src/phylog.c | 72 ++++++++++++++-------------- src/sptips.c | 2 vignettes/figs/adephylo-011.pdf |binary vignettes/figs/adephylo-015.pdf |binary vignettes/figs/adephylo-017.pdf |binary vignettes/figs/adephylo-aboutest.pdf |binary vignettes/figs/adephylo-figFourBas.pdf |binary vignettes/figs/adephylo-lm1.pdf |binary vignettes/figs/adephylo-loadings.pdf |binary vignettes/figs/adephylo-orthobas1.pdf |binary vignettes/figs/adephylo-pca1.pdf |binary vignettes/figs/adephylo-pca2.pdf |binary vignettes/figs/adephylo-phylo4d.pdf |binary vignettes/figs/adephylo-resid.pdf |binary 42 files changed, 252 insertions(+), 158 deletions(-)
Title: Fast, Dependency-Free Geodesic Distance Calculations
Description: Dependency-free, ultra fast calculation of geodesic
distances. Includes the reference nanometre-accuracy geodesic
distances of Karney (2013) <doi:10.1007/s00190-012-0578-z>, as used by
the 'sf' package, as well as Haversine and Vincenty distances. Default
distance measure is the "Mapbox cheap ruler" which is generally more
accurate than Haversine or Vincenty for distances out to a few hundred
kilometres, and is considerably faster. The main function accepts one
or two inputs in almost any generic rectangular form, and returns
either matrices of pairwise distances, or vectors of sequential
distances.
Author: Mark Padgham [aut, cre],
Michael D. Sumner [aut],
Charles F.F Karney [cph]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between geodist versions 0.0.7 dated 2021-01-27 and 0.0.8 dated 2022-10-19
geodist-0.0.7/geodist/inst/precommit |only geodist-0.0.8/geodist/DESCRIPTION | 29 geodist-0.0.8/geodist/MD5 | 77 geodist-0.0.8/geodist/NEWS.md | 10 geodist-0.0.8/geodist/R/geodist-vec.R | 68 geodist-0.0.8/geodist/R/geodist.R | 62 geodist-0.0.8/geodist/R/georange.R | 41 geodist-0.0.8/geodist/R/utils.R | 135 - geodist-0.0.8/geodist/build/vignette.rds |binary geodist-0.0.8/geodist/inst/CITATION |only geodist-0.0.8/geodist/inst/WORDLIST | 243 ++ geodist-0.0.8/geodist/inst/doc/geodist.html | 1571 +++++++++++++-- geodist-0.0.8/geodist/man/geodist.Rd | 12 geodist-0.0.8/geodist/man/geodist_benchmark.Rd | 9 geodist-0.0.8/geodist/man/geodist_vec.Rd | 12 geodist-0.0.8/geodist/man/georange.Rd | 2 geodist-0.0.8/geodist/src/common.c | 2 geodist-0.0.8/geodist/src/common.h | 2 geodist-0.0.8/geodist/src/dists_paired.c | 47 geodist-0.0.8/geodist/src/dists_paired.h |only geodist-0.0.8/geodist/src/dists_paired_vec.c | 49 geodist-0.0.8/geodist/src/dists_paired_vec.h |only geodist-0.0.8/geodist/src/dists_seq.c | 41 geodist-0.0.8/geodist/src/dists_seq.h |only geodist-0.0.8/geodist/src/dists_seq_vec.c | 41 geodist-0.0.8/geodist/src/dists_seq_vec.h |only geodist-0.0.8/geodist/src/dists_x.c | 61 geodist-0.0.8/geodist/src/dists_x.h |only geodist-0.0.8/geodist/src/dists_x_vec.c | 54 geodist-0.0.8/geodist/src/dists_x_vec.h |only geodist-0.0.8/geodist/src/dists_xy.c | 59 geodist-0.0.8/geodist/src/dists_xy.h |only geodist-0.0.8/geodist/src/dists_xy_vec.c | 59 geodist-0.0.8/geodist/src/dists_xy_vec.h |only geodist-0.0.8/geodist/src/geodesic.c | 1384 +++++++++---- geodist-0.0.8/geodist/src/geodesic.h | 709 +++++- geodist-0.0.8/geodist/src/range_seq.c | 74 geodist-0.0.8/geodist/src/range_seq.h |only geodist-0.0.8/geodist/src/range_x.c | 73 geodist-0.0.8/geodist/src/range_x.h |only geodist-0.0.8/geodist/src/range_xy.c | 95 geodist-0.0.8/geodist/src/range_xy.h |only geodist-0.0.8/geodist/tests/testthat/test-geodist.R | 43 geodist-0.0.8/geodist/tests/testthat/test-georange.R | 12 geodist-0.0.8/geodist/tests/testthat/test-input-format.R | 6 geodist-0.0.8/geodist/tests/testthat/test-measures.R | 12 46 files changed, 3873 insertions(+), 1221 deletions(-)
Title: Diagnostic Index Expectation Maximisation in R
Description: Likelihood-based genome polarisation finds which alleles of genomic markers
belong to which side of the barrier.
Co-estimates which individuals belong to either side of the barrier and barrier strength.
Uses expectation maximisation in likelihood framework. The method is described in
Baird et al. (2022) <doi:10.1111/2041-210X.14010>.
Author: Natalia Martinkova [aut, cre] ,
Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between diemr versions 1.0 dated 2022-03-29 and 1.1 dated 2022-10-19
diemr-1.0/diemr/README.md |only diemr-1.1/diemr/DESCRIPTION | 13 diemr-1.1/diemr/MD5 | 39 diemr-1.1/diemr/NAMESPACE | 1 diemr-1.1/diemr/NEWS.md | 15 diemr-1.1/diemr/R/CheckDiemFormat.r | 2 diemr-1.1/diemr/R/diem.r | 18 diemr-1.1/diemr/R/importPolarized.r | 2 diemr-1.1/diemr/R/pHetErrOnStateCount.r | 2 diemr-1.1/diemr/R/plotPolarized.r | 23 diemr-1.1/diemr/build/vignette.rds |binary diemr-1.1/diemr/inst/CITATION | 42 diemr-1.1/diemr/inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.R | 4 diemr-1.1/diemr/inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd | 23 diemr-1.1/diemr/inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html | 537 ++++++---- diemr-1.1/diemr/man/CheckDiemFormat.Rd | 2 diemr-1.1/diemr/man/diem.Rd | 6 diemr-1.1/diemr/man/importPolarized.Rd | 2 diemr-1.1/diemr/man/pHetErrOnStateCount.Rd | 2 diemr-1.1/diemr/man/plotPolarized.Rd | 18 diemr-1.1/diemr/vignettes/diemr-diagnostic-index-expecation-maximisation-in-r.Rmd | 23 21 files changed, 479 insertions(+), 295 deletions(-)
Title: Utility Functions for 'spatstat'
Description: Contains utility functions for the 'spatstat' family of packages
which may also be useful for other purposes.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.utils versions 2.3-1 dated 2022-05-06 and 3.0-1 dated 2022-10-19
DESCRIPTION | 11 ++++--- MD5 | 35 ++++++++++++------------ NAMESPACE | 2 + NEWS | 39 +++++++++++++++++++++++++++ R/resolve.defaults.R | 10 +++--- R/utilseq.R | 32 ++++++++++++++++++---- inst/doc/packagesizes.txt | 2 - man/check.anyvector.Rd | 8 +++-- man/expand.polynom.Rd | 4 +- man/harmonicmean.Rd |only man/macros/defns.Rd | 21 +++++++++++++- src/distseg.c | 22 +++++++++------ src/distseg.h | 33 +++++++++++------------ src/fastinterv.c | 14 +++++---- src/inxyp.c | 18 ++++++------ src/matchindices.c | 66 ++++++++++++++++++++++++++++------------------ src/matchpoints.c | 16 ++++++----- src/ply.h | 31 +++++++-------------- src/primefax.c | 11 ++++--- 19 files changed, 239 insertions(+), 136 deletions(-)
More information about spatstat.utils at CRAN
Permanent link
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The information is available
in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Melissa Hallow [aut],
Wenping Wang [aut],
Zufar Mulyukov [ctb],
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Awad H. Al-Mohy [ctb],
Cleve Moler [ctb],
Drew Schmidt [ctb],
Ernst Hairer [ctb],
Gerhard Wanner [ctb],
Gilber [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 2.0.8 dated 2022-09-22 and 2.0.9 dated 2022-10-19
rxode2-2.0.8/rxode2/R/et.R |only rxode2-2.0.8/rxode2/R/register-s3.R |only rxode2-2.0.8/rxode2/R/rxCbindStudyIndividual.R |only rxode2-2.0.8/rxode2/R/rxode2-win-setup.R |only rxode2-2.0.8/rxode2/build/partial.rdb |only rxode2-2.0.8/rxode2/inst/include/rxode2_model_shared.c |only rxode2-2.0.8/rxode2/inst/include/rxode2_model_shared.h |only rxode2-2.0.8/rxode2/man/add.dosing.Rd |only rxode2-2.0.8/rxode2/man/add.sampling.Rd |only rxode2-2.0.8/rxode2/man/as.et.Rd |only rxode2-2.0.8/rxode2/man/cvPost.Rd |only rxode2-2.0.8/rxode2/man/dot-clearPipe.Rd |only rxode2-2.0.8/rxode2/man/dot-s3register.Rd |only rxode2-2.0.8/rxode2/man/et.Rd |only rxode2-2.0.8/rxode2/man/etExpand.Rd |only rxode2-2.0.8/rxode2/man/etRbind.Rd |only rxode2-2.0.8/rxode2/man/etRep.Rd |only rxode2-2.0.8/rxode2/man/etSeq.Rd |only rxode2-2.0.8/rxode2/man/eventTable.Rd |only rxode2-2.0.8/rxode2/man/invWR1d.Rd |only rxode2-2.0.8/rxode2/man/is.rxEt.Rd |only rxode2-2.0.8/rxode2/man/phi.Rd |only rxode2-2.0.8/rxode2/man/rLKJ1.Rd |only rxode2-2.0.8/rxode2/man/rinvchisq.Rd |only rxode2-2.0.8/rxode2/man/rxCbindStudyIndividual.Rd |only rxode2-2.0.8/rxode2/man/rxEvid.Rd |only rxode2-2.0.8/rxode2/man/rxGetSeed.Rd |only rxode2-2.0.8/rxode2/man/rxPhysicalDrives.Rd |only rxode2-2.0.8/rxode2/man/rxRandNV.Rd |only rxode2-2.0.8/rxode2/man/rxRateDur.Rd |only rxode2-2.0.8/rxode2/man/rxReq.Rd |only rxode2-2.0.8/rxode2/man/rxRmvn.Rd |only rxode2-2.0.8/rxode2/man/rxSetSeed.Rd |only rxode2-2.0.8/rxode2/man/rxStack.Rd |only rxode2-2.0.8/rxode2/man/rxWinSetup.Rd |only rxode2-2.0.8/rxode2/man/rxWithSeed.Rd |only rxode2-2.0.8/rxode2/src/WinDrive.cpp |only rxode2-2.0.8/rxode2/src/cbindThetaOmega.cpp |only rxode2-2.0.8/rxode2/src/checkmate.cpp |only rxode2-2.0.8/rxode2/src/checkmate_stub.c |only rxode2-2.0.8/rxode2/src/codegen.c |only rxode2-2.0.8/rxode2/src/codegen.h |only rxode2-2.0.8/rxode2/src/codegen2.h |only rxode2-2.0.8/rxode2/src/cvPost.cpp |only rxode2-2.0.8/rxode2/src/et.cpp |only rxode2-2.0.8/rxode2/src/ewset.c |only rxode2-2.0.8/rxode2/src/fast_factor.cpp |only rxode2-2.0.8/rxode2/src/genModelVars.c |only rxode2-2.0.8/rxode2/src/genModelVars.h |only rxode2-2.0.8/rxode2/src/getOption.c |only rxode2-2.0.8/rxode2/src/getOption.h |only rxode2-2.0.8/rxode2/src/getTime.h |only rxode2-2.0.8/rxode2/src/handle_evid.h |only rxode2-2.0.8/rxode2/src/lincmt.c |only rxode2-2.0.8/rxode2/src/lincmtB.cpp |only rxode2-2.0.8/rxode2/src/lincmtB1.h |only rxode2-2.0.8/rxode2/src/llik.h |only rxode2-2.0.8/rxode2/src/llik2.h |only rxode2-2.0.8/rxode2/src/llikBeta.cpp |only rxode2-2.0.8/rxode2/src/llikBinom.cpp |only rxode2-2.0.8/rxode2/src/llikCauchy.cpp |only rxode2-2.0.8/rxode2/src/llikChisq.cpp |only rxode2-2.0.8/rxode2/src/llikExp.cpp |only rxode2-2.0.8/rxode2/src/llikF.cpp |only rxode2-2.0.8/rxode2/src/llikGamma.cpp |only rxode2-2.0.8/rxode2/src/llikGeom.cpp |only rxode2-2.0.8/rxode2/src/llikNbinom.cpp |only rxode2-2.0.8/rxode2/src/llikNbinom2.cpp |only rxode2-2.0.8/rxode2/src/llikNorm.cpp |only rxode2-2.0.8/rxode2/src/llikPois.cpp |only rxode2-2.0.8/rxode2/src/llikT.cpp |only rxode2-2.0.8/rxode2/src/llikUnif.cpp |only rxode2-2.0.8/rxode2/src/llikWeibull.cpp |only rxode2-2.0.8/rxode2/src/ode.h |only rxode2-2.0.8/rxode2/src/parseCmtProperties.h |only rxode2-2.0.8/rxode2/src/parseDdt.h |only rxode2-2.0.8/rxode2/src/parseDfdy.h |only rxode2-2.0.8/rxode2/src/parseFuns.h |only rxode2-2.0.8/rxode2/src/parseFunsDiff.h |only rxode2-2.0.8/rxode2/src/parseFunsDosing.h |only rxode2-2.0.8/rxode2/src/parseFunsLinCmt.h |only rxode2-2.0.8/rxode2/src/parseFunsNa.h |only rxode2-2.0.8/rxode2/src/parseFunsRandom.h |only rxode2-2.0.8/rxode2/src/parseIdentifier.h |only rxode2-2.0.8/rxode2/src/parseIndLin.h |only rxode2-2.0.8/rxode2/src/parseLinCmt.c |only rxode2-2.0.8/rxode2/src/parseLinCmt.h |only rxode2-2.0.8/rxode2/src/parseLinCmtAB.h |only rxode2-2.0.8/rxode2/src/parseLinCmtAdjustPars.h |only rxode2-2.0.8/rxode2/src/parseLinCmtCl.h |only rxode2-2.0.8/rxode2/src/parseLinCmtTransAlpha.h |only rxode2-2.0.8/rxode2/src/parseLinCmtTransCl.h |only rxode2-2.0.8/rxode2/src/parseLinCmtTransK.h |only rxode2-2.0.8/rxode2/src/parseLinCmtV.h |only rxode2-2.0.8/rxode2/src/parseLogical.h |only rxode2-2.0.8/rxode2/src/parseStatements.h |only rxode2-2.0.8/rxode2/src/parseSyntaxErrors.h |only rxode2-2.0.8/rxode2/src/parseVars.h |only rxode2-2.0.8/rxode2/src/phim.cpp |only rxode2-2.0.8/rxode2/src/print_node.c |only rxode2-2.0.8/rxode2/src/print_node.h |only rxode2-2.0.8/rxode2/src/qs.cpp |only rxode2-2.0.8/rxode2/src/rxStack.cpp |only rxode2-2.0.8/rxode2/src/rxthreefry.cpp |only rxode2-2.0.8/rxode2/src/rxthreefry.h |only rxode2-2.0.8/rxode2/src/rxvandercorput.cpp |only rxode2-2.0.8/rxode2/src/sbuf.h |only rxode2-2.0.8/rxode2/src/seed.cpp |only rxode2-2.0.8/rxode2/src/tran.c |only rxode2-2.0.8/rxode2/src/tran.g.d_parser.c |only rxode2-2.0.8/rxode2/src/tran.h |only rxode2-2.0.8/rxode2/tests/testthat/test-cholperm.R |only rxode2-2.0.9/rxode2/DESCRIPTION | 47 rxode2-2.0.9/rxode2/MD5 | 487 - rxode2-2.0.9/rxode2/NAMESPACE | 84 rxode2-2.0.9/rxode2/NEWS.md | 31 rxode2-2.0.9/rxode2/R/DollarNames.R | 5 rxode2-2.0.9/rxode2/R/RcppExports.R | 348 - rxode2-2.0.9/rxode2/R/assert.R | 3 rxode2-2.0.9/rxode2/R/confint.R | 2 rxode2-2.0.9/rxode2/R/err-sim.R | 1 rxode2-2.0.9/rxode2/R/err.R | 3 rxode2-2.0.9/rxode2/R/format.R | 14 rxode2-2.0.9/rxode2/R/geom-amt.R | 5 rxode2-2.0.9/rxode2/R/llik.R | 348 - rxode2-2.0.9/rxode2/R/modlib.R | 15 rxode2-2.0.9/rxode2/R/mu.R | 2 rxode2-2.0.9/rxode2/R/piping-ini.R | 8 rxode2-2.0.9/rxode2/R/piping-model.R | 26 rxode2-2.0.9/rxode2/R/piping.R | 3 rxode2-2.0.9/rxode2/R/plot.R | 4 rxode2-2.0.9/rxode2/R/print.R | 130 rxode2-2.0.9/rxode2/R/reexport.R | 188 rxode2-2.0.9/rxode2/R/rxParams.R | 46 rxode2-2.0.9/rxode2/R/rxUiGet.R | 1 rxode2-2.0.9/rxode2/R/rxode-options.R | 87 rxode2-2.0.9/rxode2/R/rxode2.R | 53 rxode2-2.0.9/rxode2/R/rxode2_md5.R | 2 rxode2-2.0.9/rxode2/R/rxrandom.R | 87 rxode2-2.0.9/rxode2/R/rxsolve.R | 197 rxode2-2.0.9/rxode2/R/ui-getControl.R | 9 rxode2-2.0.9/rxode2/R/ui.R | 65 rxode2-2.0.9/rxode2/R/utils.R | 584 - rxode2-2.0.9/rxode2/README.md | 309 - rxode2-2.0.9/rxode2/configure | 2 rxode2-2.0.9/rxode2/inst/COPYRIGHTS | 13 rxode2-2.0.9/rxode2/inst/doc/rxode2-syntax.html | 16 rxode2-2.0.9/rxode2/inst/include/rxode2.h | 303 - rxode2-2.0.9/rxode2/inst/include/rxode2_RcppExports.h | 589 - rxode2-2.0.9/rxode2/inst/tools/workaround.R | 90 rxode2-2.0.9/rxode2/man/assertRxUi.Rd | 3 rxode2-2.0.9/rxode2/man/figures/README-intro-central-1.png |binary rxode2-2.0.9/rxode2/man/figures/README-intro-effect-1.png |binary rxode2-2.0.9/rxode2/man/llikBeta.Rd | 4 rxode2-2.0.9/rxode2/man/llikBinom.Rd | 7 rxode2-2.0.9/rxode2/man/llikCauchy.Rd | 24 rxode2-2.0.9/rxode2/man/llikChisq.Rd | 2 rxode2-2.0.9/rxode2/man/llikExp.Rd | 6 rxode2-2.0.9/rxode2/man/llikF.Rd | 9 rxode2-2.0.9/rxode2/man/llikGamma.Rd | 6 rxode2-2.0.9/rxode2/man/llikGeom.Rd | 3 rxode2-2.0.9/rxode2/man/llikNbinom.Rd | 5 rxode2-2.0.9/rxode2/man/llikNbinomMu.Rd | 3 rxode2-2.0.9/rxode2/man/llikNorm.Rd | 9 rxode2-2.0.9/rxode2/man/llikPois.Rd | 7 rxode2-2.0.9/rxode2/man/llikT.Rd | 32 rxode2-2.0.9/rxode2/man/llikUnif.Rd | 5 rxode2-2.0.9/rxode2/man/llikWeibull.Rd | 7 rxode2-2.0.9/rxode2/man/odeMethodToInt.Rd |only rxode2-2.0.9/rxode2/man/reexports.Rd | 43 rxode2-2.0.9/rxode2/man/rxModelVars.Rd | 3 rxode2-2.0.9/rxode2/man/rxSolve.Rd | 2 rxode2-2.0.9/rxode2/man/rxUiDecompress.Rd |only rxode2-2.0.9/rxode2/man/rxbeta.Rd | 7 rxode2-2.0.9/rxode2/man/rxbinom.Rd | 7 rxode2-2.0.9/rxode2/man/rxcauchy.Rd | 7 rxode2-2.0.9/rxode2/man/rxchisq.Rd | 7 rxode2-2.0.9/rxode2/man/rxexp.Rd | 7 rxode2-2.0.9/rxode2/man/rxf.Rd | 7 rxode2-2.0.9/rxode2/man/rxgamma.Rd | 8 rxode2-2.0.9/rxode2/man/rxgeom.Rd | 7 rxode2-2.0.9/rxode2/man/rxnbinom.Rd | 7 rxode2-2.0.9/rxode2/man/rxnormV.Rd | 36 rxode2-2.0.9/rxode2/man/rxode2.Rd | 39 rxode2-2.0.9/rxode2/man/rxpois.Rd | 7 rxode2-2.0.9/rxode2/man/rxt.Rd | 7 rxode2-2.0.9/rxode2/man/rxunif.Rd | 7 rxode2-2.0.9/rxode2/man/rxweibull.Rd | 7 rxode2-2.0.9/rxode2/man/stat_amt.Rd | 14 rxode2-2.0.9/rxode2/man/stat_cens.Rd | 14 rxode2-2.0.9/rxode2/src/Makevars.in | 18 rxode2-2.0.9/rxode2/src/RcppExports.cpp | 1579 ----- rxode2-2.0.9/rxode2/src/approx.c |only rxode2-2.0.9/rxode2/src/boost.cpp | 7 rxode2-2.0.9/rxode2/src/call_dvode.c | 10 rxode2-2.0.9/rxode2/src/cbindThetaOmega.h | 2 rxode2-2.0.9/rxode2/src/cfode_static.c | 2 rxode2-2.0.9/rxode2/src/checkmate.h | 20 rxode2-2.0.9/rxode2/src/daxpy.c | 8 rxode2-2.0.9/rxode2/src/ddot.c | 8 rxode2-2.0.9/rxode2/src/dgefa.c | 160 rxode2-2.0.9/rxode2/src/dgesl.c | 138 rxode2-2.0.9/rxode2/src/dscal.c | 6 rxode2-2.0.9/rxode2/src/etTran.cpp | 36 rxode2-2.0.9/rxode2/src/expandGrid.cpp | 2 rxode2-2.0.9/rxode2/src/handle_evid.c | 2 rxode2-2.0.9/rxode2/src/idamax.c | 6 rxode2-2.0.9/rxode2/src/init.c | 323 - rxode2-2.0.9/rxode2/src/lsoda.c | 4 rxode2-2.0.9/rxode2/src/lsoda.h | 4 rxode2-2.0.9/rxode2/src/par_solve.cpp | 92 rxode2-2.0.9/rxode2/src/rprintf.c | 2 rxode2-2.0.9/rxode2/src/rxData.cpp | 124 rxode2-2.0.9/rxode2/src/rxData.h | 18 rxode2-2.0.9/rxode2/src/rxInv.cpp | 2 rxode2-2.0.9/rxode2/src/rxode2_df.cpp | 13 rxode2-2.0.9/rxode2/src/rxode2parse.c |only rxode2-2.0.9/rxode2/src/rxode2random.c |only rxode2-2.0.9/rxode2/src/rxomp.h | 8 rxode2-2.0.9/rxode2/src/sbuf.c | 17 rxode2-2.0.9/rxode2/src/seed.h | 16 rxode2-2.0.9/rxode2/src/utilc.c | 137 rxode2-2.0.9/rxode2/src/utilcpp.cpp | 67 rxode2-2.0.9/rxode2/tests/testthat/test-100-cmt.R | 42 rxode2-2.0.9/rxode2/tests/testthat/test-alag.R | 1 rxode2-2.0.9/rxode2/tests/testthat/test-bad-dose.R | 32 rxode2-2.0.9/rxode2/tests/testthat/test-basic.R | 46 rxode2-2.0.9/rxode2/tests/testthat/test-cov.R | 766 +- rxode2-2.0.9/rxode2/tests/testthat/test-cvpost.R | 140 rxode2-2.0.9/rxode2/tests/testthat/test-data-frame.R | 218 rxode2-2.0.9/rxode2/tests/testthat/test-data-table.R | 160 rxode2-2.0.9/rxode2/tests/testthat/test-deSolve-events.R | 86 rxode2-2.0.9/rxode2/tests/testthat/test-dfRep.R | 11 rxode2-2.0.9/rxode2/tests/testthat/test-dollar-names.R | 242 rxode2-2.0.9/rxode2/tests/testthat/test-dplyr.R | 224 rxode2-2.0.9/rxode2/tests/testthat/test-drop.R | 104 rxode2-2.0.9/rxode2/tests/testthat/test-et.R | 5 rxode2-2.0.9/rxode2/tests/testthat/test-etTrans.R | 1206 ++-- rxode2-2.0.9/rxode2/tests/testthat/test-evid2.R | 186 rxode2-2.0.9/rxode2/tests/testthat/test-example-3-2.R | 40 rxode2-2.0.9/rxode2/tests/testthat/test-example-3-5-1.R | 80 rxode2-2.0.9/rxode2/tests/testthat/test-example-6.R | 816 +- rxode2-2.0.9/rxode2/tests/testthat/test-expand-grid.R | 86 rxode2-2.0.9/rxode2/tests/testthat/test-fixef.R | 60 rxode2-2.0.9/rxode2/tests/testthat/test-fun.R | 188 rxode2-2.0.9/rxode2/tests/testthat/test-gammap.R | 38 rxode2-2.0.9/rxode2/tests/testthat/test-hmax.R | 1938 +++--- rxode2-2.0.9/rxode2/tests/testthat/test-modelargs.R | 104 rxode2-2.0.9/rxode2/tests/testthat/test-nodup-keep.R | 60 rxode2-2.0.9/rxode2/tests/testthat/test-nopred-ui.R | 46 rxode2-2.0.9/rxode2/tests/testthat/test-occ.R | 5 rxode2-2.0.9/rxode2/tests/testthat/test-off.R | 66 rxode2-2.0.9/rxode2/tests/testthat/test-opt-expr.R | 62 rxode2-2.0.9/rxode2/tests/testthat/test-phi.R | 200 rxode2-2.0.9/rxode2/tests/testthat/test-pipeline.R | 231 rxode2-2.0.9/rxode2/tests/testthat/test-random.R | 51 rxode2-2.0.9/rxode2/tests/testthat/test-resample.R | 720 +- rxode2-2.0.9/rxode2/tests/testthat/test-reset.R | 112 rxode2-2.0.9/rxode2/tests/testthat/test-rm-dll.R | 58 rxode2-2.0.9/rxode2/tests/testthat/test-rxIs.R | 206 rxode2-2.0.9/rxode2/tests/testthat/test-rxRmvn.R | 224 rxode2-2.0.9/rxode2/tests/testthat/test-rxStack-factor.R | 50 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-004.R | 34 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-005.R | 74 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-050.R | 62 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-056.R | 26 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-163.R | 94 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-169.R | 52 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-178.R | 34 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-272.R | 66 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-299.R | 104 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-349.R | 118 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-352.R | 68 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-375.R | 230 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-393.R | 142 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-398.R | 74 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-410.R | 48 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-430.R | 54 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-431.R | 8 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-433.R | 98 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-435.R | 84 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-445.R | 106 rxode2-2.0.9/rxode2/tests/testthat/test-rxode-issue-468.R | 186 rxode2-2.0.9/rxode2/tests/testthat/test-rxs.R | 18 rxode2-2.0.9/rxode2/tests/testthat/test-seq.R | 130 rxode2-2.0.9/rxode2/tests/testthat/test-symmetric.R | 162 rxode2-2.0.9/rxode2/tests/testthat/test-tlast-rxS.R | 8 rxode2-2.0.9/rxode2/tests/testthat/test-ui-assert.R | 628 +- rxode2-2.0.9/rxode2/tests/testthat/test-ui-bad.R | 1314 ++-- rxode2-2.0.9/rxode2/tests/testthat/test-ui-bounds-err.R | 286 rxode2-2.0.9/rxode2/tests/testthat/test-ui-drop-lines.R | 480 - rxode2-2.0.9/rxode2/tests/testthat/test-ui-err.R | 2970 +++++----- rxode2-2.0.9/rxode2/tests/testthat/test-ui-fix-unfix.R | 106 rxode2-2.0.9/rxode2/tests/testthat/test-ui-focei-ord.R | 172 rxode2-2.0.9/rxode2/tests/testthat/test-ui-good.R | 462 - rxode2-2.0.9/rxode2/tests/testthat/test-ui-ini-lotri.R | 86 rxode2-2.0.9/rxode2/tests/testthat/test-ui-mod-functions.R | 184 rxode2-2.0.9/rxode2/tests/testthat/test-ui-model.R | 578 - rxode2-2.0.9/rxode2/tests/testthat/test-ui-multiple-endpoint.R | 814 +- rxode2-2.0.9/rxode2/tests/testthat/test-ui-piping.R | 22 rxode2-2.0.9/rxode2/tests/testthat/test-ui-promote.R | 53 rxode2-2.0.9/rxode2/tests/testthat/test-ui-solve.R | 99 rxode2-2.0.9/rxode2/tests/testthat/test-ui.R | 904 +-- 303 files changed, 12235 insertions(+), 15326 deletions(-)
Title: Streams of Random Numbers
Description: Unified object oriented interface for multiple independent streams of random numbers from different sources.
Author: Josef Leydold <josef.leydold@wu.ac.at>
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between rstream versions 1.3.6 dated 2020-02-03 and 1.3.7 dated 2022-10-19
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS | 6 ++++++ inst/doc/rstream.pdf |binary man/rstream-package.Rd | 4 ++-- src/R_RNG.c | 4 ++-- 6 files changed, 20 insertions(+), 14 deletions(-)
Title: Comprehensive Collection of Color Palettes
Description: The choices of color palettes in R can be quite
overwhelming with palettes spread over many packages with many
different API's. This packages aims to collect all color palettes
across the R ecosystem under the same package with a streamlined API.
Author: See AUTHORS file.
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between paletteer versions 1.4.1 dated 2022-10-16 and 1.5.0 dated 2022-10-19
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Title: Extended Structural Equation Modelling
Description: Create structural equation models that can be manipulated programmatically.
Models may be specified with matrices or paths (LISREL or RAM)
Example models include confirmatory factor, multiple group, mixture
distribution, categorical threshold, modern test theory, differential
Fit functions include full information maximum likelihood, maximum likelihood, and weighted least squares.
equations, state space, and many others.
Support and advanced package binaries available at <http://openmx.ssri.psu.edu>.
The software is described in Neale, Hunter, Pritikin, Zahery, Brick,
Kirkpatrick, Estabrook, Bates, Maes, & Boker (2016) <doi:10.1007/s11336-014-9435-8>.
Author: Steven M. Boker [aut],
Michael C. Neale [aut],
Hermine H. Maes [aut],
Michael J. Wilde [ctb],
Michael Spiegel [aut],
Timothy R. Brick [aut],
Ryne Estabrook [aut],
Timothy C. Bates [aut],
Paras Mehta [ctb],
Timo von Oertzen [ctb],
Ross J. Gore [aut],
[...truncated...]
Maintainer: Joshua N. Pritikin <jpritikin@pobox.com>
Diff between OpenMx versions 2.20.6 dated 2022-03-09 and 2.20.7 dated 2022-10-19
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 7 ------- R/MxFitFunctionWLS.R | 8 ++++---- R/MxSummary.R | 6 +++--- R/MxTryHard.R | 16 ++++++++-------- R/MxVersion.R | 2 +- R/sysdata.rda |binary build/OpenMx.pdf |binary build/vignette.rds |binary inst/CITATION | 2 +- inst/doc/deriv.html | 18 +++++++++--------- inst/doc/factor_analysis.html | 6 +++--- inst/doc/reg_mimic.html | 10 +++++----- src/omxRAMExpectation.cpp | 4 ++-- 15 files changed, 54 insertions(+), 61 deletions(-)
More information about campaignmanageR at CRAN
Permanent link
Title: Very Large Numbers in R
Description: Very large numbers in R. Real numbers are held
using their natural logarithms, plus a logical flag indicating
sign. Functionality for complex numbers is also provided. The
package includes a vignette that gives a step-by-step
introduction to using S4 methods.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between Brobdingnag versions 1.2-7 dated 2022-02-03 and 1.2-9 dated 2022-10-19
Brobdingnag-1.2-7/Brobdingnag/man/figures/brobdingnag.png |only Brobdingnag-1.2-9/Brobdingnag/DESCRIPTION | 10 - Brobdingnag-1.2-9/Brobdingnag/MD5 | 42 +++-- Brobdingnag-1.2-9/Brobdingnag/NAMESPACE | 12 + Brobdingnag-1.2-9/Brobdingnag/R/aaa_allclasses.R | 2 Brobdingnag-1.2-9/Brobdingnag/R/brob.R | 11 - Brobdingnag-1.2-9/Brobdingnag/R/glub.R | 13 - Brobdingnag-1.2-9/Brobdingnag/R/matrix.R | 11 - Brobdingnag-1.2-9/Brobdingnag/build/partial.rdb |binary Brobdingnag-1.2-9/Brobdingnag/build/vignette.rds |binary Brobdingnag-1.2-9/Brobdingnag/inst/doc/Brobdingnag.R | 4 Brobdingnag-1.2-9/Brobdingnag/inst/doc/Brobdingnag.Rnw | 44 +++--- Brobdingnag-1.2-9/Brobdingnag/inst/doc/Brobdingnag.pdf |binary Brobdingnag-1.2-9/Brobdingnag/inst/doc/S4_brob.R | 44 ++---- Brobdingnag-1.2-9/Brobdingnag/inst/doc/S4_brob.Rnw | 102 ++++++-------- Brobdingnag-1.2-9/Brobdingnag/inst/doc/S4_brob.pdf |binary Brobdingnag-1.2-9/Brobdingnag/man/Extract.Rd | 17 ++ Brobdingnag-1.2-9/Brobdingnag/man/brobmat-class.Rd | 1 Brobdingnag-1.2-9/Brobdingnag/man/figures/Brobdingnag.png |only Brobdingnag-1.2-9/Brobdingnag/tests |only Brobdingnag-1.2-9/Brobdingnag/vignettes/Brobdingnag.Rnw | 44 +++--- Brobdingnag-1.2-9/Brobdingnag/vignettes/S4_brob.Rnw | 102 ++++++-------- Brobdingnag-1.2-9/Brobdingnag/vignettes/brob.bib | 25 +-- 23 files changed, 249 insertions(+), 235 deletions(-)
Title: Multivariate Multiscale Spatial Analysis
Description: Tools for the multiscale spatial analysis of multivariate data.
Several methods are based on the use of a spatial weighting matrix and its
eigenvector decomposition (Moran's Eigenvectors Maps, MEM).
Several approaches are described in the review Dray et al (2012)
<doi:10.1890/11-1183.1>.
Author: Stephane Dray, David Bauman, Guillaume Blanchet, Daniel Borcard,
Sylvie Clappe, Guillaume Guenard, Thibaut Jombart, Guillaume Larocque,
Pierre Legendre, Naima Madi, Helene H Wagner
Maintainer: Stephane Dray <stephane.dray@univ-lyon1.fr>
Diff between adespatial versions 0.3-19 dated 2022-09-02 and 0.3-20 dated 2022-10-19
DESCRIPTION | 10 - MD5 | 12 - inst/doc/tutorial.R | 1 inst/doc/tutorial.Rmd | 1 inst/doc/tutorial.html | 344 +++++++++++++++++++++++------------------------ inst/listw.explore/app.R | 2 vignettes/tutorial.Rmd | 1 7 files changed, 185 insertions(+), 186 deletions(-)
Title: A 'Linter' for R Code
Description: Checks adherence to a given style, syntax errors and possible
semantic issues. Supports on the fly checking of R code edited with
'RStudio IDE', 'Emacs', 'Vim', 'Sublime Text', 'Atom' and 'Visual
Studio Code'.
Author: Jim Hester [aut, cre],
Florent Angly [aut] ,
Russ Hyde [aut],
Michael Chirico [aut],
Kun Ren [aut],
Alexander Rosenstock [aut] ,
Indrajeet Patil [aut]
Maintainer: Jim Hester <james.f.hester@gmail.com>
Diff between lintr versions 3.0.1 dated 2022-09-13 and 3.0.2 dated 2022-10-19
DESCRIPTION | 6 ++--- MD5 | 22 +++++++++---------- NEWS.md | 4 +++ R/lint.R | 36 +++++++++++++++----------------- R/settings.R | 18 ++++------------ build/lintr.pdf |binary inst/doc/creating_linters.html | 4 +-- inst/doc/lintr.html | 6 ++--- tests/testthat/checkstyle.xml | 2 - tests/testthat/test-cache.R | 4 +++ tests/testthat/test-checkstyle_output.R | 4 ++- tests/testthat/test-settings.R | 10 ++++---- 12 files changed, 58 insertions(+), 58 deletions(-)
Title: Spatial and Spatio-Temporal Geostatistical Modelling, Prediction
and Simulation
Description: Variogram modelling; simple, ordinary and universal point or block (co)kriging; spatio-temporal kriging; sequential Gaussian or indicator (co)simulation; variogram and variogram map plotting utility functions; supports sf and stars.
Author: Edzer Pebesma [aut, cre] ,
Benedikt Graeler [aut]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between gstat versions 2.0-9 dated 2022-03-14 and 2.1-0 dated 2022-10-19
DESCRIPTION | 12 +- MD5 | 103 +++++++++---------- NEWS.md | 6 + R/circEmbed.R | 2 R/krigeST.R | 68 ++++++++---- R/stVariogramModels.R | 46 ++++---- R/variogramST.R | 4 build/vignette.rds |binary data/DE_RB_2005.rda |binary data/coalash.rda |binary data/fulmar.rda |binary data/jura.rda |binary data/meuse.all.rda |binary data/meuse.alt.rda |binary data/ncp.grid.rda |binary data/oxford.rda |binary data/pcb.rda |binary data/sic2004.rda |binary data/sic97.rda |binary data/tull.rda |binary data/vv.rda |binary data/walker.rda |binary data/wind.rda |binary demo/00Index | 2 demo/sftime.R |only inst/doc/gstat.pdf |binary inst/doc/prs.pdf |binary inst/doc/spatio-temporal-kriging.pdf |binary inst/doc/st.pdf |binary man/fit.variogram.Rd | 2 man/fit.variogram.gls.Rd | 2 man/gstat.Rd | 2 man/hscat.Rd | 2 man/krige.Rd | 2 man/krigeST.Rd | 12 +- man/meuse.all.Rd | 2 man/pcb.Rd | 4 man/predict.gstat.Rd | 2 man/variogram.Rd | 2 man/variogramST.Rd | 2 man/vgm.Rd | 2 src/glvars.c | 10 - src/mtrx.c | 14 +- src/nsearch.c | 2 src/sim.c | 12 -- tests/allier.Rout.save | 74 ++++++------- tests/merge.Rout.save | 74 ++++++------- tests/stars.R | 12 -- tests/stars.Rout.save | 77 +------------- tests/unproj.R | 7 - tests/unproj.Rout.save | 189 +++++++++++++---------------------- tests/windst.R | 4 tests/windst.Rout.save | 175 ++++++++++++++++---------------- 53 files changed, 429 insertions(+), 500 deletions(-)
Title: Simulate Fantasy Football Seasons
Description: Uses bootstrap resampling to run fantasy football season
simulations supported by historical rankings and 'nflfastR' data,
calculating optimal lineups, and returning aggregated results.
Author: Tan Ho [aut, cre, cph]
Maintainer: Tan Ho <tan@tanho.ca>
Diff between ffsimulator versions 1.2.1 dated 2022-08-14 and 1.2.2 dated 2022-10-19
DESCRIPTION | 6 - MD5 | 14 +- NEWS.md | 6 + R/3_rosters.R | 274 +++++++++++++++++++++++++------------------------- inst/doc/basic.html | 4 inst/doc/custom.html | 4 man/ffs_franchises.Rd | 2 man/ffs_rosters.Rd | 4 8 files changed, 164 insertions(+), 150 deletions(-)
Title: Spatial Point Patterns Analysis
Description: Perform first- and second-order multi-scale analyses derived from Ripley K-function (Ripley B. D. (1977) <doi:10.1111/j.2517-6161.1977.tb01615.x>), for univariate,
multivariate and marked mapped data in rectangular, circular or irregular shaped sampling windows, with tests of
statistical significance based on Monte Carlo simulations.
Author: Raphael Pelissier [aut], Francois Goreaud [aut], Philippe Verley [ctb, cre]
Maintainer: Raphael Pelissier <raphael.pelissier@ird.fr>
Diff between ads versions 1.5-6 dated 2022-06-13 and 1.5-7 dated 2022-10-19
DESCRIPTION | 10 ++++---- MD5 | 8 +++--- src/adssub.h | 2 - src/triangulate.c | 63 ++++++++++++++++++++++++++++++++++++------------------ src/triangulate.h | 33 ++++++++++++++++++++++++++++ 5 files changed, 85 insertions(+), 31 deletions(-)
Title: 2d, 2.5d, and 3d Delaunay Tessellations
Description: Construction and visualization of 2d Delaunay triangulations,
possibly constrained, 2.5d (i.e. elevated) Delaunay triangulations,
and 3d Delaunay triangulations.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between delaunay versions 1.1.0 dated 2022-07-19 and 1.1.1 dated 2022-10-19
DESCRIPTION | 9 MD5 | 26 NAMESPACE | 50 - NEWS.md | 19 R/RcppExports.R | 46 - R/aaa.R | 8 R/delaunay.R | 1494 ++++++++++++++++++++--------------------- R/internal.R | 100 +- R/is.R | 54 - README.md | 58 - inst/extdata/face_edges.txt | 42 - inst/extdata/face_vertices.txt | 50 - src/Makevars.in | 2 src/Makevars.win | 2 14 files changed, 982 insertions(+), 978 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-14 1.3.2
2020-11-22 1.3.1
2020-10-20 1.2.1
2020-09-01 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-04-16 1.0.0
Title: Portfolio Management with R
Description: Functions and examples for 'Portfolio
Management with R': backtesting investment and
trading strategies, computing profit/loss and
returns, analysing trades, handling lists of
transactions, reporting, and more.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between PMwR versions 0.17-0 dated 2021-10-19 and 0.18-0 dated 2022-10-19
PMwR-0.17-0/PMwR/ChangeLog |only PMwR-0.18-0/PMwR/DESCRIPTION | 15 - PMwR-0.18-0/PMwR/MD5 | 58 ++-- PMwR-0.18-0/PMwR/NEWS | 38 ++- PMwR-0.18-0/PMwR/R/btest.R | 37 ++- PMwR-0.18-0/PMwR/R/internal.R | 23 + PMwR-0.18-0/PMwR/R/position.R | 129 +++++++---- PMwR-0.18-0/PMwR/R/streaks.R | 66 ++++- PMwR-0.18-0/PMwR/README.md |only PMwR-0.18-0/PMwR/build/vignette.rds |binary PMwR-0.18-0/PMwR/inst/CITATION | 4 PMwR-0.18-0/PMwR/inst/doc/An_overview_of_PMwR.R | 12 - PMwR-0.18-0/PMwR/inst/doc/An_overview_of_PMwR.Rnw | 62 ++--- PMwR-0.18-0/PMwR/inst/doc/An_overview_of_PMwR.pdf |binary PMwR-0.18-0/PMwR/inst/doc/Computing_returns.pdf |binary PMwR-0.18-0/PMwR/inst/doc/Drawdowns_streaks.pdf |binary PMwR-0.18-0/PMwR/inst/doc/FinTeX.pdf |binary PMwR-0.18-0/PMwR/inst/doc/pl_open_positions.pdf |binary PMwR-0.18-0/PMwR/inst/doc/q32.pdf |binary PMwR-0.18-0/PMwR/inst/tinytest/test_btest_initial.position.R | 22 + PMwR-0.18-0/PMwR/inst/tinytest/test_internal.R |only PMwR-0.18-0/PMwR/inst/tinytest/test_position.R | 14 + PMwR-0.18-0/PMwR/inst/tinytest/test_position_account.R |only PMwR-0.18-0/PMwR/inst/tinytest/test_position_named.R | 2 PMwR-0.18-0/PMwR/inst/tinytest/test_streaks.R | 5 PMwR-0.18-0/PMwR/man/PMwR-internal.Rd | 7 PMwR-0.18-0/PMwR/man/PMwR-package.Rd | 14 - PMwR-0.18-0/PMwR/man/is_valid_ISIN.Rd | 6 PMwR-0.18-0/PMwR/man/position.Rd | 2 PMwR-0.18-0/PMwR/man/streaks.Rd | 29 +- PMwR-0.18-0/PMwR/tests/tinytest.R | 7 PMwR-0.18-0/PMwR/vignettes/An_overview_of_PMwR.Rnw | 62 ++--- 32 files changed, 393 insertions(+), 221 deletions(-)
Title: Derivative-Free Optimization Algorithms by Quadratic
Approximation
Description: Derivative-free optimization by quadratic approximation
based on an interface to Fortran implementations by M. J. D.
Powell.
Author: Douglas Bates, Katharine M. Mullen, John C. Nash, Ravi Varadhan
Maintainer: Katharine M. Mullen <katharine.mullen@stat.ucla.edu>
Diff between minqa versions 1.2.4 dated 2014-10-09 and 1.2.5 dated 2022-10-19
ChangeLog | 9 ++++++++- DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/altmov.f | 1 + 4 files changed, 17 insertions(+), 9 deletions(-)
Title: Routines for L1 Estimation
Description: L1 estimation for linear regression using Barrodale and Roberts' method
<doi:10.1145/355616.361024> and the EM algorithm <doi:10.1023/A:1020759012226>,
density, distribution function, quantile function and random number generation
for univariate and multivariate Laplace distribution.
Author: Felipe Osorio [aut, cre] ,
Tymoteusz Wolodzko [aut]
Maintainer: Felipe Osorio <felipe.osorios@usm.cl>
Diff between L1pack versions 0.41 dated 2022-08-15 and 0.41-2 dated 2022-10-19
L1pack-0.41-2/L1pack/ChangeLog | 3 L1pack-0.41-2/L1pack/DESCRIPTION | 15 - L1pack-0.41-2/L1pack/MD5 | 37 ++-- L1pack-0.41-2/L1pack/NAMESPACE | 4 L1pack-0.41-2/L1pack/R/l1fit.R | 41 ++-- L1pack-0.41-2/L1pack/R/lad.R | 257 +++++++++++++++++++--------- L1pack-0.41-2/L1pack/inst/CITATION | 4 L1pack-0.41-2/L1pack/man/confint.lad.Rd | 20 +- L1pack-0.41-2/L1pack/man/l1fit.Rd | 46 ++--- L1pack-0.41-2/L1pack/man/lad.Rd | 26 +- L1pack-0.41-2/L1pack/man/lad.fit-methods.Rd |only L1pack-0.41-2/L1pack/man/lad.fit.Rd |only L1pack-0.41-2/L1pack/man/rmLaplace.Rd | 2 L1pack-0.41-2/L1pack/man/simulate.lad.Rd | 8 L1pack-0.41-2/L1pack/man/vcov.lad.Rd | 8 L1pack-0.41-2/L1pack/src/R_init_L1pack.c | 11 - L1pack-0.41-2/L1pack/src/l1_BR.f |only L1pack-0.41-2/L1pack/src/lad.h | 50 ----- L1pack-0.41-2/L1pack/src/lad_EM.c |only L1pack-0.41-2/L1pack/src/lad_LP.c |only L1pack-0.41/L1pack/R/control.R |only L1pack-0.41/L1pack/man/l1pack.control.Rd |only L1pack-0.41/L1pack/src/l1fit.f |only L1pack-0.41/L1pack/src/lad.c |only 24 files changed, 307 insertions(+), 225 deletions(-)
Title: Design of High-Order Portfolios Including Skewness and Kurtosis
Description: The classical Markowitz's mean-variance portfolio formulation ignores
heavy tails and skewness. High-order portfolios use higher order moments to
better characterize the return distribution. Different formulations and fast
algorithms are proposed for high-order portfolios based on the mean, variance,
skewness, and kurtosis.
The package is based on the papers:
R. Zhou and D. P. Palomar (2021). "Solving High-Order Portfolios via
Successive Convex Approximation Algorithms." <arXiv:2008.00863>.
X. Wang, R. Zhou, J. Ying, and D. P. Palomar (2022). "Efficient and Scalable
High-Order Portfolios Design via Parametric Skew-t Distribution." <arXiv:2206.02412>.
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut],
Xiwen Wang [aut]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
Diff between highOrderPortfolios versions 0.0.2 dated 2022-10-11 and 0.1.0 dated 2022-10-19
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 7 +++++++ R/highOrderPortfolios-package.R | 7 +++++-- README.md | 18 ++++++++---------- inst/CITATION | 4 ++-- man/figures/README-unnamed-chunk-5-1.png |binary 7 files changed, 33 insertions(+), 25 deletions(-)
More information about highOrderPortfolios at CRAN
Permanent link
Title: Stochastic Volatility Models with or without Leverage
Description: The efficient Markov chain Monte Carlo estimation of stochastic volatility models with and without leverage (asymmetric and symmetric stochastic volatility models). Further, it computes the logarithm of the likelihood given parameters using particle filters.
Author: Yasuhiro Omori [aut, cre],
Ryuji Hashimoto [ctr]
Maintainer: Yasuhiro Omori <omori.yasuhiro@gmail.com>
Diff between ASV versions 1.1.0 dated 2022-09-02 and 1.1.1 dated 2022-10-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 ++++++- build/partial.rdb |binary src/asv.cpp | 12 ++++++------ 5 files changed, 20 insertions(+), 15 deletions(-)
Title: Computation of Satellite Position
Description: Provides basic functionalities to calculate the position of
satellites given a known state vector. The package includes implementations
of the SGP4 and SDP4 simplified perturbation models to propagate orbital
state vectors, as well as utilities to read TLE files and convert coordinates
between different frames of reference. Several of the functionalities of the
package (including the high-precision numerical orbit propagator) require
the coefficients and data included in the 'asteRiskData' package, available
in a 'drat' repository. To install this data package, run
'install.packages("asteRiskData", repos="https://rafael-ayala.github.io/drat/")'.
Felix R. Hoots, Ronald L. Roehrich and T.S. Kelso (1988) <https://celestrak.org/NORAD/documentation/spacetrk.pdf>.
David Vallado, Paul Crawford, Richard Hujsak and T.S. Kelso (2012) <doi:10.2514/6.2006-6753>.
Felix R. Hoots, Paul W. Schumacher Jr. and Robert A. Glover (2014) <doi:10.2514/1.9161>.
Author: Rafael Ayala [aut, cre] ,
Daniel Ayala [aut] ,
David Ruiz [aut] ,
Lara Selles Vidal [aut]
Maintainer: Rafael Ayala <rafael.ayala@oist.jp>
Diff between asteRisk versions 1.4.1 dated 2022-06-30 and 1.4.2 dated 2022-10-19
DESCRIPTION | 8 MD5 | 54 +++--- NEWS | 7 R/RcppExports.R | 4 R/auxiliaryFunctions.R | 2 R/hpop.R | 5 R/hpop_acceleration.R | 37 +++- R/hpop_auxiliaryFunctions.R | 373 +++++++++++++++++++++++++++++++++++++------- R/utils.R | 8 R/zzz.R | 2 inst/doc/asteRisk.Rmd | 12 - inst/doc/asteRisk.html | 18 +- man/ECItoKOE.Rd | 2 man/GCRFtoITRF.Rd | 2 man/ITRFtoGCRF.Rd | 2 man/JPLephemerides.Rd | 20 +- man/KOEtoECI.Rd | 2 man/TEMEtoGCRF.Rd | 2 man/TEMEtoITRF.Rd | 2 man/getLatestSpaceData.Rd | 4 man/parseTLElines.Rd | 4 man/readTLE.Rd | 4 man/sdp4.Rd | 4 man/sgdp4.Rd | 4 man/sgp4.Rd | 4 src/RcppExports.cpp | 17 ++ src/utils.cpp | 34 ++++ vignettes/asteRisk.Rmd | 12 - 28 files changed, 502 insertions(+), 147 deletions(-)
Title: Translates an R Function to a C++ Function
Description: Enable translation of a tiny subset of R to C++. The user has to define a R function which gets translated. For a full list of possible functions check the documentation. After translation an R function is returned which is a shallow wrapper around the C++ code. Alternatively an external pointer to the C++ function is returned to the user. The intention of the package is to generate fast functions which can be used as ode-system or during optimization.
Author: Kraemer Konrad [aut, cre]
Maintainer: Kraemer Konrad <konrad_kraemer@yahoo.de>
Diff between ast2ast versions 0.2 dated 2022-09-15 and 0.2.1 dated 2022-10-19
DESCRIPTION | 8 MD5 | 46 ++- NEWS |only R/translate.R | 2 inst/doc/InformationForPackageAuthors.html | 8 inst/include/etr_bits/add.hpp | 6 inst/include/etr_bits/allocation.hpp | 14 - inst/include/etr_bits/checks_na_inf.hpp | 4 inst/include/etr_bits/colon.hpp | 46 +-- inst/include/etr_bits/comparison.hpp | 98 ++++---- inst/include/etr_bits/concatenate.hpp | 12 - inst/include/etr_bits/distri.hpp | 32 +- inst/include/etr_bits/divide.hpp | 6 inst/include/etr_bits/exponent.hpp | 18 - inst/include/etr_bits/interpolation.hpp | 8 inst/include/etr_bits/mul.hpp | 6 inst/include/etr_bits/print.hpp | 20 - inst/include/etr_bits/subset.hpp | 342 ++++++++++++++--------------- inst/include/etr_bits/subsetassign.hpp | 114 ++++----- inst/include/etr_bits/subtract.hpp | 77 ++++++ inst/include/etr_bits/trigo.hpp | 54 ++-- inst/include/etr_bits/util.hpp | 2 inst/include/etr_bits/vec.hpp | 22 - inst/include/type_ast2ast.hpp |only man/translate.Rd | 10 25 files changed, 513 insertions(+), 442 deletions(-)
Title: Semisupervised Document Scaling with Word-Embedding Models
Description: A word embeddings-based semisupervised model for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>.
LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove).
It can generate word vectors on a users-provided corpus or incorporate a pre-trained word vectors.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between LSX versions 1.1.2 dated 2022-10-02 and 1.1.3 dated 2022-10-19
DESCRIPTION | 8 +++--- MD5 | 18 +++++++------- NAMESPACE | 1 NEWS.md | 5 +++ R/textmodel.R | 12 ++++++--- R/textstat.R | 14 ----------- R/utils.R | 2 - man/as.seedwords.Rd | 4 +-- man/textmodel_lss.Rd | 61 ++++++++++++++++++++++++++++++++++++++++++++++-- man/textstat_context.Rd | 16 ------------ 10 files changed, 88 insertions(+), 53 deletions(-)
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging
in linear models and generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors from Li and Clyde
(2019) <DOI:10.1080/01621459.2018.1469992> in generalized linear models.
Other model selection criteria include AIC, BIC and Empirical Bayes
estimates of g. Sampling probabilities may be updated based on the sampled
models using sampling w/out replacement or an efficient MCMC algorithm which
samples models using a tree structure of the model space
as an efficient hash table. See Clyde, Ghosh and Littman (2010)
<DOI:10.1198/jcgs.2010.09049> for details on the sampling algorithms.
Uniform prior [...truncated...]
Author: Merlise Clyde [aut, cre, cph] ,
Michael Littman [ctb],
Quanli Wang [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb],
Don van de Bergh [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Diff between BAS versions 1.6.2 dated 2022-04-26 and 1.6.3 dated 2022-10-19
BAS-1.6.2/BAS/src/gamma.c |only BAS-1.6.2/BAS/src/hyperg.c |only BAS-1.6.2/BAS/src/hypergeoF.c |only BAS-1.6.2/BAS/src/polevl.c |only BAS-1.6.2/BAS/src/psi.c |only BAS-1.6.3/BAS/DESCRIPTION | 10 - BAS-1.6.3/BAS/MD5 | 48 +++----- BAS-1.6.3/BAS/NEWS.md | 10 + BAS-1.6.3/BAS/R/BAS-package.R | 41 +++--- BAS-1.6.3/BAS/R/bas_glm.R | 51 +++++--- BAS-1.6.3/BAS/R/bas_lm.R | 23 ++- BAS-1.6.3/BAS/R/image.R | 2 BAS-1.6.3/BAS/build/partial.rdb |binary BAS-1.6.3/BAS/build/vignette.rds |binary BAS-1.6.3/BAS/inst/doc/BAS-vignette.html | 137 ++++++++++++----------- BAS-1.6.3/BAS/man/BAS.Rd | 12 -- BAS-1.6.3/BAS/man/bas.lm.Rd | 4 BAS-1.6.3/BAS/src/cch.c | 4 BAS-1.6.3/BAS/src/glm_fit.c | 2 BAS-1.6.3/BAS/src/hyp1F1.c |only BAS-1.6.3/BAS/src/hyp2f1.c | 51 ++------ BAS-1.6.3/BAS/src/hypergeometric2F1.c |only BAS-1.6.3/BAS/src/lm_mcmcbas.c | 4 BAS-1.6.3/BAS/src/model_probabilities.c | 4 BAS-1.6.3/BAS/src/mtherr.c | 6 - BAS-1.6.3/BAS/tests/testthat/Rplots.pdf |only BAS-1.6.3/BAS/tests/testthat/test-bas-glm.R | 31 +++++ BAS-1.6.3/BAS/tests/testthat/test-bas-lm.R | 14 ++ BAS-1.6.3/BAS/tests/testthat/test-model-priors.R | 9 + 29 files changed, 262 insertions(+), 201 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-18 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-10 1.4.3