Title: Vector Helpers
Description: Defines new notions of prototype and size that are
used to provide tools for consistent and well-founded type-coercion
and size-recycling, and are in turn connected to ideas of type- and
size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut],
Lionel Henry [aut, cre],
Davis Vaughan [aut],
data.table team [cph] and
their contribution to R's order),
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between vctrs versions 0.4.2 dated 2022-09-29 and 0.5.0 dated 2022-10-21
vctrs-0.4.2/vctrs/R/cast-list.R |only vctrs-0.4.2/vctrs/man/vec_list_cast.Rd |only vctrs-0.4.2/vctrs/tests/testthat/test-cast-list.R |only vctrs-0.5.0/vctrs/DESCRIPTION | 8 vctrs-0.5.0/vctrs/MD5 | 613 ++++---- vctrs-0.5.0/vctrs/NAMESPACE | 30 vctrs-0.5.0/vctrs/NEWS.md | 203 ++ vctrs-0.5.0/vctrs/R/assert.R | 63 vctrs-0.5.0/vctrs/R/bind.R | 29 vctrs-0.5.0/vctrs/R/c.R | 17 vctrs-0.5.0/vctrs/R/cast.R | 73 vctrs-0.5.0/vctrs/R/compare.R | 22 vctrs-0.5.0/vctrs/R/compat-lifecycle.R | 2 vctrs-0.5.0/vctrs/R/compat-obj-type.R |only vctrs-0.5.0/vctrs/R/compat-types.check.R |only vctrs-0.5.0/vctrs/R/complete.R | 15 vctrs-0.5.0/vctrs/R/conditions.R | 39 vctrs-0.5.0/vctrs/R/dictionary.R | 49 vctrs-0.5.0/vctrs/R/equal.R | 41 vctrs-0.5.0/vctrs/R/interval.R | 79 - vctrs-0.5.0/vctrs/R/match.R | 43 vctrs-0.5.0/vctrs/R/missing.R |only vctrs-0.5.0/vctrs/R/names.R | 37 vctrs-0.5.0/vctrs/R/order.R | 64 vctrs-0.5.0/vctrs/R/proxy.R | 30 vctrs-0.5.0/vctrs/R/ptype-abbr-full.R | 86 - vctrs-0.5.0/vctrs/R/rank.R | 7 vctrs-0.5.0/vctrs/R/recycle.R | 100 + vctrs-0.5.0/vctrs/R/register-s3.R | 86 + vctrs-0.5.0/vctrs/R/rep.R | 28 vctrs-0.5.0/vctrs/R/shape.R | 11 vctrs-0.5.0/vctrs/R/size.R | 3 vctrs-0.5.0/vctrs/R/slice-chop.R | 45 vctrs-0.5.0/vctrs/R/slice-interleave.R | 14 vctrs-0.5.0/vctrs/R/subscript-loc.R | 144 + vctrs-0.5.0/vctrs/R/subscript.R | 121 - vctrs-0.5.0/vctrs/R/type-asis.R | 18 vctrs-0.5.0/vctrs/R/type-bare.R | 8 vctrs-0.5.0/vctrs/R/type-data-frame.R | 246 --- vctrs-0.5.0/vctrs/R/type-date-time.R | 11 vctrs-0.5.0/vctrs/R/type-factor.R | 9 vctrs-0.5.0/vctrs/R/type-list-of.R | 119 + vctrs-0.5.0/vctrs/R/type-misc.R | 5 vctrs-0.5.0/vctrs/R/type-rcrd.R | 11 vctrs-0.5.0/vctrs/R/type-sf.R | 6 vctrs-0.5.0/vctrs/R/type-vctr.R | 26 vctrs-0.5.0/vctrs/R/type.R | 2 vctrs-0.5.0/vctrs/R/type2.R | 174 -- vctrs-0.5.0/vctrs/R/utils.R | 36 vctrs-0.5.0/vctrs/R/vctrs-deprecated.R | 49 vctrs-0.5.0/vctrs/R/vctrs-package.R | 2 vctrs-0.5.0/vctrs/R/zzz.R | 3 vctrs-0.5.0/vctrs/inst/doc/pillar.R | 2 vctrs-0.5.0/vctrs/inst/doc/pillar.Rmd | 2 vctrs-0.5.0/vctrs/inst/doc/s3-vector.R | 82 - vctrs-0.5.0/vctrs/inst/doc/s3-vector.Rmd | 123 + vctrs-0.5.0/vctrs/inst/doc/s3-vector.html | 556 ++++--- vctrs-0.5.0/vctrs/inst/doc/stability.html | 12 vctrs-0.5.0/vctrs/inst/doc/type-size.html | 6 vctrs-0.5.0/vctrs/inst/include/vctrs.c | 2 vctrs-0.5.0/vctrs/inst/include/vctrs.h | 2 vctrs-0.5.0/vctrs/man/data_frame.Rd | 29 vctrs-0.5.0/vctrs/man/df_list.Rd | 23 vctrs-0.5.0/vctrs/man/df_ptype2.Rd | 12 vctrs-0.5.0/vctrs/man/faq-compatibility-types.Rd | 10 vctrs-0.5.0/vctrs/man/faq-error-scalar-type.Rd | 13 vctrs-0.5.0/vctrs/man/faq/developer/theory-coercion.Rmd | 7 vctrs-0.5.0/vctrs/man/faq/user/faq-error-scalar-type.Rmd | 4 vctrs-0.5.0/vctrs/man/howto-faq-coercion-data-frame.Rd | 10 vctrs-0.5.0/vctrs/man/howto-faq-coercion.Rd | 8 vctrs-0.5.0/vctrs/man/list_of.Rd | 9 vctrs-0.5.0/vctrs/man/maybe_lossy_cast.Rd | 12 vctrs-0.5.0/vctrs/man/missing.Rd |only vctrs-0.5.0/vctrs/man/reference-faq-compatibility.Rd | 17 vctrs-0.5.0/vctrs/man/s3_register.Rd | 2 vctrs-0.5.0/vctrs/man/theory-faq-coercion.Rd | 43 vctrs-0.5.0/vctrs/man/vctrs-package.Rd | 2 vctrs-0.5.0/vctrs/man/vec-rep.Rd | 30 vctrs-0.5.0/vctrs/man/vec_as_location.Rd | 69 vctrs-0.5.0/vctrs/man/vec_as_names.Rd | 21 vctrs-0.5.0/vctrs/man/vec_as_subscript.Rd | 5 vctrs-0.5.0/vctrs/man/vec_bind.Rd | 29 vctrs-0.5.0/vctrs/man/vec_c.Rd | 14 vctrs-0.5.0/vctrs/man/vec_cast.Rd | 12 vctrs-0.5.0/vctrs/man/vec_chop.Rd | 48 vctrs-0.5.0/vctrs/man/vec_count.Rd | 3 vctrs-0.5.0/vctrs/man/vec_default_ptype2.Rd | 12 vctrs-0.5.0/vctrs/man/vec_detect_complete.Rd | 15 vctrs-0.5.0/vctrs/man/vec_equal.Rd | 25 vctrs-0.5.0/vctrs/man/vec_equal_na.Rd |only vctrs-0.5.0/vctrs/man/vec_interleave.Rd | 8 vctrs-0.5.0/vctrs/man/vec_is_list.Rd | 37 vctrs-0.5.0/vctrs/man/vec_locate_matches.Rd | 8 vctrs-0.5.0/vctrs/man/vec_names.Rd | 19 vctrs-0.5.0/vctrs/man/vec_order.Rd | 22 vctrs-0.5.0/vctrs/man/vec_proxy.Rd | 10 vctrs-0.5.0/vctrs/man/vec_proxy_compare.Rd | 9 vctrs-0.5.0/vctrs/man/vec_proxy_equal.Rd | 12 vctrs-0.5.0/vctrs/man/vec_ptype2.Rd | 6 vctrs-0.5.0/vctrs/man/vec_rank.Rd |only vctrs-0.5.0/vctrs/man/vec_recycle.Rd | 33 vctrs-0.5.0/vctrs/man/vec_size.Rd | 3 vctrs-0.5.0/vctrs/man/vec_unchop.Rd |only vctrs-0.5.0/vctrs/man/vector_recycling_rules.Rd |only vctrs-0.5.0/vctrs/src/assert.c | 45 vctrs-0.5.0/vctrs/src/bind.c | 156 -- vctrs-0.5.0/vctrs/src/c-unchop.c | 348 ++-- vctrs-0.5.0/vctrs/src/c-unchop.h |only vctrs-0.5.0/vctrs/src/c.c | 451 +++-- vctrs-0.5.0/vctrs/src/c.h | 49 vctrs-0.5.0/vctrs/src/cast-dispatch.c | 28 vctrs-0.5.0/vctrs/src/cast.c | 115 - vctrs-0.5.0/vctrs/src/cast.h | 26 vctrs-0.5.0/vctrs/src/compare.c | 172 +- vctrs-0.5.0/vctrs/src/compare.h | 63 vctrs-0.5.0/vctrs/src/complete.c | 20 vctrs-0.5.0/vctrs/src/conditions.c | 18 vctrs-0.5.0/vctrs/src/decl/assert-decl.h | 6 vctrs-0.5.0/vctrs/src/decl/bind-decl.h | 12 vctrs-0.5.0/vctrs/src/decl/c-decl.h |only vctrs-0.5.0/vctrs/src/decl/c-unchop-decl.h |only vctrs-0.5.0/vctrs/src/decl/compare-decl.h |only vctrs-0.5.0/vctrs/src/decl/interval-decl.h | 9 vctrs-0.5.0/vctrs/src/decl/match-decl.h | 40 vctrs-0.5.0/vctrs/src/decl/match-joint-decl.h |only vctrs-0.5.0/vctrs/src/decl/missing-decl.h |only vctrs-0.5.0/vctrs/src/decl/names-decl.h | 47 vctrs-0.5.0/vctrs/src/decl/poly-op-decl.h |only vctrs-0.5.0/vctrs/src/decl/proxy-decl.h |only vctrs-0.5.0/vctrs/src/decl/proxy-restore-decl.h |only vctrs-0.5.0/vctrs/src/decl/ptype-decl.h | 6 vctrs-0.5.0/vctrs/src/decl/rep-decl.h |only vctrs-0.5.0/vctrs/src/decl/rlang-dev-decl.h | 3 vctrs-0.5.0/vctrs/src/decl/runs-decl.h |only vctrs-0.5.0/vctrs/src/decl/shape-decl.h |only vctrs-0.5.0/vctrs/src/decl/size-decl.h | 3 vctrs-0.5.0/vctrs/src/decl/subscript-loc-decl.h | 12 vctrs-0.5.0/vctrs/src/decl/type-data-frame-decl.h | 7 vctrs-0.5.0/vctrs/src/decl/type-info-decl.h | 4 vctrs-0.5.0/vctrs/src/decl/typeof2-s3-decl.h |only vctrs-0.5.0/vctrs/src/dictionary.c | 62 vctrs-0.5.0/vctrs/src/dictionary.h | 10 vctrs-0.5.0/vctrs/src/equal.c | 229 --- vctrs-0.5.0/vctrs/src/equal.h | 112 - vctrs-0.5.0/vctrs/src/fill.c | 8 vctrs-0.5.0/vctrs/src/globals.c | 27 vctrs-0.5.0/vctrs/src/globals.h | 28 vctrs-0.5.0/vctrs/src/hash.c | 38 vctrs-0.5.0/vctrs/src/init.c | 121 - vctrs-0.5.0/vctrs/src/interval.c | 232 ++- vctrs-0.5.0/vctrs/src/match-compare.h | 38 vctrs-0.5.0/vctrs/src/match-joint.c | 206 ++ vctrs-0.5.0/vctrs/src/match.c | 232 +-- vctrs-0.5.0/vctrs/src/missing.c |only vctrs-0.5.0/vctrs/src/missing.h |only vctrs-0.5.0/vctrs/src/names.c | 763 +++++----- vctrs-0.5.0/vctrs/src/names.h | 51 vctrs-0.5.0/vctrs/src/order-collate.c | 10 vctrs-0.5.0/vctrs/src/order-groups.c | 4 vctrs-0.5.0/vctrs/src/order-groups.h | 2 vctrs-0.5.0/vctrs/src/order-sortedness.c | 38 vctrs-0.5.0/vctrs/src/order-truelength.c | 10 vctrs-0.5.0/vctrs/src/order.c | 74 vctrs-0.5.0/vctrs/src/owned.h | 7 vctrs-0.5.0/vctrs/src/poly-op.c | 255 +-- vctrs-0.5.0/vctrs/src/poly-op.h | 34 vctrs-0.5.0/vctrs/src/proxy-restore.c | 286 ++- vctrs-0.5.0/vctrs/src/proxy-restore.h |only vctrs-0.5.0/vctrs/src/proxy.c | 362 +--- vctrs-0.5.0/vctrs/src/proxy.h |only vctrs-0.5.0/vctrs/src/ptype-common.c | 7 vctrs-0.5.0/vctrs/src/ptype-common.h | 1 vctrs-0.5.0/vctrs/src/ptype.c | 73 vctrs-0.5.0/vctrs/src/ptype.h | 1 vctrs-0.5.0/vctrs/src/ptype2-dispatch.c | 103 - vctrs-0.5.0/vctrs/src/ptype2-dispatch.h | 8 vctrs-0.5.0/vctrs/src/ptype2.c | 70 vctrs-0.5.0/vctrs/src/ptype2.h | 17 vctrs-0.5.0/vctrs/src/rep.c | 399 ++--- vctrs-0.5.0/vctrs/src/rlang-dev.c | 25 vctrs-0.5.0/vctrs/src/rlang-dev.h | 43 vctrs-0.5.0/vctrs/src/rlang/arg.c | 10 vctrs-0.5.0/vctrs/src/rlang/arg.h | 5 vctrs-0.5.0/vctrs/src/rlang/c-utils.h | 2 vctrs-0.5.0/vctrs/src/rlang/call.c | 2 vctrs-0.5.0/vctrs/src/rlang/cnd.c | 25 vctrs-0.5.0/vctrs/src/rlang/cnd.h | 18 vctrs-0.5.0/vctrs/src/rlang/decl/env-decl.h | 33 vctrs-0.5.0/vctrs/src/rlang/dyn-array.c | 2 vctrs-0.5.0/vctrs/src/rlang/env-binding.c | 10 vctrs-0.5.0/vctrs/src/rlang/env.c | 133 + vctrs-0.5.0/vctrs/src/rlang/env.h | 2 vctrs-0.5.0/vctrs/src/rlang/eval.c | 8 vctrs-0.5.0/vctrs/src/rlang/eval.h | 33 vctrs-0.5.0/vctrs/src/rlang/fn.c | 2 vctrs-0.5.0/vctrs/src/rlang/globals.c | 5 vctrs-0.5.0/vctrs/src/rlang/globals.h | 3 vctrs-0.5.0/vctrs/src/rlang/obj.c | 29 vctrs-0.5.0/vctrs/src/rlang/obj.h | 4 vctrs-0.5.0/vctrs/src/rlang/quo.c | 2 vctrs-0.5.0/vctrs/src/rlang/rlang-types.h | 5 vctrs-0.5.0/vctrs/src/rlang/rlang.c | 1 vctrs-0.5.0/vctrs/src/rlang/rlang.h | 4 vctrs-0.5.0/vctrs/src/rlang/session.c | 47 vctrs-0.5.0/vctrs/src/rlang/session.h | 3 vctrs-0.5.0/vctrs/src/rlang/stack.c | 4 vctrs-0.5.0/vctrs/src/rlang/stack.h | 4 vctrs-0.5.0/vctrs/src/rlang/sym.c | 2 vctrs-0.5.0/vctrs/src/rlang/vec-lgl.c | 65 vctrs-0.5.0/vctrs/src/rlang/vec.h | 10 vctrs-0.5.0/vctrs/src/rlang/vendor.c | 2 vctrs-0.5.0/vctrs/src/runs.c | 444 ++--- vctrs-0.5.0/vctrs/src/runs.h |only vctrs-0.5.0/vctrs/src/shape.c | 162 +- vctrs-0.5.0/vctrs/src/shape.h | 5 vctrs-0.5.0/vctrs/src/size.c | 88 - vctrs-0.5.0/vctrs/src/size.h | 4 vctrs-0.5.0/vctrs/src/slice-array.c | 14 vctrs-0.5.0/vctrs/src/slice-assign-array.c | 14 vctrs-0.5.0/vctrs/src/slice-assign.c | 49 vctrs-0.5.0/vctrs/src/slice-assign.h | 1 vctrs-0.5.0/vctrs/src/slice-chop.c | 83 - vctrs-0.5.0/vctrs/src/slice-chop.h |only vctrs-0.5.0/vctrs/src/slice.c | 46 vctrs-0.5.0/vctrs/src/strides.h | 2 vctrs-0.5.0/vctrs/src/subscript-loc.c | 328 +++- vctrs-0.5.0/vctrs/src/subscript-loc.h | 4 vctrs-0.5.0/vctrs/src/subscript.c | 14 vctrs-0.5.0/vctrs/src/subscript.h | 2 vctrs-0.5.0/vctrs/src/type-complex.h | 28 vctrs-0.5.0/vctrs/src/type-data-frame.c | 98 - vctrs-0.5.0/vctrs/src/type-data-frame.h | 14 vctrs-0.5.0/vctrs/src/type-date-time.c | 2 vctrs-0.5.0/vctrs/src/type-factor.c | 66 vctrs-0.5.0/vctrs/src/type-info.c | 58 vctrs-0.5.0/vctrs/src/type-info.h | 24 vctrs-0.5.0/vctrs/src/typeof2-s3.c | 719 ++++----- vctrs-0.5.0/vctrs/src/typeof2-s3.h |only vctrs-0.5.0/vctrs/src/typeof2.c | 563 +++---- vctrs-0.5.0/vctrs/src/typeof2.h |only vctrs-0.5.0/vctrs/src/unspecified.c | 2 vctrs-0.5.0/vctrs/src/utils-dispatch.h | 12 vctrs-0.5.0/vctrs/src/utils.c | 106 - vctrs-0.5.0/vctrs/src/utils.h | 31 vctrs-0.5.0/vctrs/src/vctrs-core.c | 8 vctrs-0.5.0/vctrs/src/vctrs-core.h | 22 vctrs-0.5.0/vctrs/src/vctrs.h | 276 --- vctrs-0.5.0/vctrs/src/version.c | 4 vctrs-0.5.0/vctrs/tests/testthat/_snaps/assert.md | 88 + vctrs-0.5.0/vctrs/tests/testthat/_snaps/bind.md | 146 + vctrs-0.5.0/vctrs/tests/testthat/_snaps/c.md | 158 +- vctrs-0.5.0/vctrs/tests/testthat/_snaps/cast.md | 10 vctrs-0.5.0/vctrs/tests/testthat/_snaps/compare.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/conditions.md | 10 vctrs-0.5.0/vctrs/tests/testthat/_snaps/dictionary.md | 16 vctrs-0.5.0/vctrs/tests/testthat/_snaps/error-call.md | 44 vctrs-0.5.0/vctrs/tests/testthat/_snaps/interval.md | 11 vctrs-0.5.0/vctrs/tests/testthat/_snaps/lifecycle-deprecated.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/match.md | 162 +- vctrs-0.5.0/vctrs/tests/testthat/_snaps/names.md | 212 ++ vctrs-0.5.0/vctrs/tests/testthat/_snaps/order.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/ptype-abbr-full.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/rank.md | 6 vctrs-0.5.0/vctrs/tests/testthat/_snaps/rep.md | 130 + vctrs-0.5.0/vctrs/tests/testthat/_snaps/runs.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/shape.md | 24 vctrs-0.5.0/vctrs/tests/testthat/_snaps/slice-assign.md | 16 vctrs-0.5.0/vctrs/tests/testthat/_snaps/slice-chop.md | 327 +++- vctrs-0.5.0/vctrs/tests/testthat/_snaps/slice-interleave.md | 6 vctrs-0.5.0/vctrs/tests/testthat/_snaps/slice.md | 15 vctrs-0.5.0/vctrs/tests/testthat/_snaps/subscript-loc.md | 510 ++++-- vctrs-0.5.0/vctrs/tests/testthat/_snaps/subscript.md | 118 + vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-asis.md | 4 vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-data-frame.md | 151 - vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-list-of.md | 23 vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-misc.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-rcrd.md | 8 vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-table.md |only vctrs-0.5.0/vctrs/tests/testthat/_snaps/type-tibble.md | 14 vctrs-0.5.0/vctrs/tests/testthat/_snaps/type.md | 24 vctrs-0.5.0/vctrs/tests/testthat/_snaps/type2.md | 75 vctrs-0.5.0/vctrs/tests/testthat/helper-conditions.R | 48 vctrs-0.5.0/vctrs/tests/testthat/helper-expectations.R | 23 vctrs-0.5.0/vctrs/tests/testthat/helper-restart.R |only vctrs-0.5.0/vctrs/tests/testthat/helper-s3.R | 10 vctrs-0.5.0/vctrs/tests/testthat/helper-vctrs.R | 11 vctrs-0.5.0/vctrs/tests/testthat/test-assert.R | 72 vctrs-0.5.0/vctrs/tests/testthat/test-bind.R | 277 +++ vctrs-0.5.0/vctrs/tests/testthat/test-c.R | 232 ++- vctrs-0.5.0/vctrs/tests/testthat/test-cast.R | 64 vctrs-0.5.0/vctrs/tests/testthat/test-compare.R | 18 vctrs-0.5.0/vctrs/tests/testthat/test-conditions.R | 23 vctrs-0.5.0/vctrs/tests/testthat/test-dictionary.R | 9 vctrs-0.5.0/vctrs/tests/testthat/test-equal.R | 42 vctrs-0.5.0/vctrs/tests/testthat/test-interval.R | 113 + vctrs-0.5.0/vctrs/tests/testthat/test-lifecycle-deprecated.R | 26 vctrs-0.5.0/vctrs/tests/testthat/test-match.R | 130 + vctrs-0.5.0/vctrs/tests/testthat/test-missing.R |only vctrs-0.5.0/vctrs/tests/testthat/test-names.R | 96 - vctrs-0.5.0/vctrs/tests/testthat/test-order.R | 17 vctrs-0.5.0/vctrs/tests/testthat/test-proxy-restore.R | 63 vctrs-0.5.0/vctrs/tests/testthat/test-proxy.R | 32 vctrs-0.5.0/vctrs/tests/testthat/test-ptype-abbr-full.R | 42 vctrs-0.5.0/vctrs/tests/testthat/test-rep.R | 55 vctrs-0.5.0/vctrs/tests/testthat/test-runs.R | 24 vctrs-0.5.0/vctrs/tests/testthat/test-shape.R | 43 vctrs-0.5.0/vctrs/tests/testthat/test-slice-chop.R | 390 +++-- vctrs-0.5.0/vctrs/tests/testthat/test-slice-interleave.R | 11 vctrs-0.5.0/vctrs/tests/testthat/test-slice.R | 8 vctrs-0.5.0/vctrs/tests/testthat/test-subscript-loc.R | 244 +++ vctrs-0.5.0/vctrs/tests/testthat/test-subscript.R | 37 vctrs-0.5.0/vctrs/tests/testthat/test-type-asis.R | 25 vctrs-0.5.0/vctrs/tests/testthat/test-type-data-frame.R | 204 -- vctrs-0.5.0/vctrs/tests/testthat/test-type-date-time.R | 16 vctrs-0.5.0/vctrs/tests/testthat/test-type-dplyr.R | 4 vctrs-0.5.0/vctrs/tests/testthat/test-type-integer64.R | 4 vctrs-0.5.0/vctrs/tests/testthat/test-type-list-of.R | 75 vctrs-0.5.0/vctrs/tests/testthat/test-type-misc.R | 25 vctrs-0.5.0/vctrs/tests/testthat/test-type-rational.R | 2 vctrs-0.5.0/vctrs/tests/testthat/test-type-rcrd.R | 40 vctrs-0.5.0/vctrs/tests/testthat/test-type-sf.R | 39 vctrs-0.5.0/vctrs/tests/testthat/test-type-table.R | 14 vctrs-0.5.0/vctrs/tests/testthat/test-type-tibble.R | 7 vctrs-0.5.0/vctrs/tests/testthat/test-type-vctr.R | 10 vctrs-0.5.0/vctrs/tests/testthat/test-type.R | 28 vctrs-0.5.0/vctrs/tests/testthat/test-type2.R | 132 - vctrs-0.5.0/vctrs/vignettes/pillar.Rmd | 2 vctrs-0.5.0/vctrs/vignettes/s3-vector.Rmd | 123 + 328 files changed, 11662 insertions(+), 7215 deletions(-)
Title: Time-Frequency Analysis of 1-D Signals
Description: A set of R functions which provide an
environment for the Time-Frequency analysis of 1-D signals (and
especially for the wavelet and Gabor transforms of noisy
signals). It was originally written for Splus by Rene Carmona,
Bruno Torresani, and Wen L. Hwang, first at the University of
California at Irvine and then at Princeton University. Credit
should also be given to Andrea Wang whose functions on the
dyadic wavelet transform are included. Rwave is based on the
book: "Practical Time-Frequency Analysis: Gabor and Wavelet
Transforms with an Implementation in S", by Rene Carmona, Wen
L. Hwang and Bruno Torresani (1998, eBook ISBN:978008053942), Academic Press.
Author: Rene Carmona [aut],
Bruno Torresani [aut],
Brandon Whitcher [ctb],
Andrea Wang [ctb],
Wen-Liang Hwang [ctb],
Robert Alberts [ctb],
Jonathan M. Lees [ctb, cre]
Maintainer: Jonathan M. Lees <jonathan.lees@unc.edu>
Diff between Rwave versions 2.6-4 dated 2022-10-19 and 2.6-5 dated 2022-10-21
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/cwt_maxima.c | 8 ++------ 3 files changed, 7 insertions(+), 11 deletions(-)
Title: Exploratory Chemometrics for Spectroscopy
Description: A collection of functions for top-down exploratory data analysis
of spectral data including nuclear magnetic resonance (NMR), infrared (IR),
Raman, X-ray fluorescence (XRF) and other similar types of spectroscopy.
Includes functions for plotting and inspecting spectra, peak alignment,
hierarchical cluster analysis (HCA), principal components analysis (PCA) and
model-based clustering. Robust methods appropriate for this type of
high-dimensional data are available. ChemoSpec is designed for structured
experiments, such as metabolomics investigations, where the samples fall into
treatment and control groups. Graphical output is formatted consistently for
publication quality plots. ChemoSpec is intended to be very user friendly and
to help you get usable results quickly. A vignette covering typical operations
is available.
Author: Bryan A. Hanson [aut, cre] ,
Mike Bostock [cph, ctb] ,
Matt Keinsley [ctb] ,
Tejasvi Gupta [ctb]
Maintainer: Bryan A. Hanson <hanson@depauw.edu>
Diff between ChemoSpec versions 6.1.3 dated 2022-03-11 and 6.1.4 dated 2022-10-21
ChemoSpec-6.1.3/ChemoSpec/R/DEFUNCT-plotScores3D.R |only ChemoSpec-6.1.3/ChemoSpec/R/DEFUNCT-plotScoresRGL.R |only ChemoSpec-6.1.3/ChemoSpec/R/LoopThruSpectra.R |only ChemoSpec-6.1.3/ChemoSpec/man/loopThruSpectra.Rd |only ChemoSpec-6.1.3/ChemoSpec/man/plotScores3D.Rd |only ChemoSpec-6.1.3/ChemoSpec/man/plotScoresRGL.Rd |only ChemoSpec-6.1.4/ChemoSpec/DESCRIPTION | 18 ++-- ChemoSpec-6.1.4/ChemoSpec/MD5 | 54 +++++------- ChemoSpec-6.1.4/ChemoSpec/NAMESPACE | 4 ChemoSpec-6.1.4/ChemoSpec/NEWS.md | 23 ++++- ChemoSpec-6.1.4/ChemoSpec/R/averageReplicates.R |only ChemoSpec-6.1.4/ChemoSpec/R/baselineSpectra.R | 19 +++- ChemoSpec-6.1.4/ChemoSpec/R/normSpectra.R | 20 +++- ChemoSpec-6.1.4/ChemoSpec/README.md | 2 ChemoSpec-6.1.4/ChemoSpec/build/vignette.rds |binary ChemoSpec-6.1.4/ChemoSpec/data/SrE.IR.RData |binary ChemoSpec-6.1.4/ChemoSpec/data/SrE.NMR.RData |binary ChemoSpec-6.1.4/ChemoSpec/data/alignMUD.RData |binary ChemoSpec-6.1.4/ChemoSpec/data/datalist | 4 ChemoSpec-6.1.4/ChemoSpec/data/metMUD1.RData |binary ChemoSpec-6.1.4/ChemoSpec/data/metMUD2.RData |binary ChemoSpec-6.1.4/ChemoSpec/inst/doc/ChemoSpec.Rmd | 2 ChemoSpec-6.1.4/ChemoSpec/inst/doc/ChemoSpec.pdf |binary ChemoSpec-6.1.4/ChemoSpec/inst/tinytest/PCRF.jdx |only ChemoSpec-6.1.4/ChemoSpec/inst/tinytest/mydata.RData |only ChemoSpec-6.1.4/ChemoSpec/inst/tinytest/test_evalClusters.R | 8 + ChemoSpec-6.1.4/ChemoSpec/man/averageReplicates.Rd |only ChemoSpec-6.1.4/ChemoSpec/man/baselineSpectra.Rd | 9 +- ChemoSpec-6.1.4/ChemoSpec/man/files2SpectraObject.Rd | 6 - ChemoSpec-6.1.4/ChemoSpec/man/normSpectra.Rd | 19 ++-- ChemoSpec-6.1.4/ChemoSpec/man/surveySpectra.Rd | 6 - ChemoSpec-6.1.4/ChemoSpec/vignettes/ChemoSpec.Rmd | 2 ChemoSpec-6.1.4/ChemoSpec/vignettes/chemometrics.bib | 9 ++ 33 files changed, 135 insertions(+), 70 deletions(-)
Title: Analyze, Summarize, and Visualize Daily Streamflow Data
Description: The Flow Analysis Summary Statistics Tool for R, 'fasstr', provides various functions to tidy and screen daily stream discharge data, calculate and visualize various summary statistics and metrics, and compute annual trending and volume frequency analyses.
It features useful function arguments for filtering of and handling dates, customizing data and metrics, and the ability to pull daily data directly from the Water Survey of Canada hydrometric database (<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>).
Author: Jon Goetz [aut, cre] ,
Carl James Schwarz [aut],
Sam Albers [ctb] ,
Robin Pike [ctb],
Province of British Columbia [cph]
Maintainer: Jon Goetz <jon.goetz@gov.bc.ca>
Diff between fasstr versions 0.4.1 dated 2021-12-10 and 0.5.0 dated 2022-10-21
DESCRIPTION | 25 MD5 | 238 - NAMESPACE | 14 NEWS.md | 67 R/calc_all_annual_stats.R | 33 R/calc_annual_cumulative_stats.R | 20 R/calc_annual_extremes.R |only R/calc_annual_flow_timing.R | 4 R/calc_annual_highflows.R |only R/calc_annual_lowflows.R | 17 R/calc_annual_normal_days.R |only R/calc_annual_outside_normal.R | 35 R/calc_annual_peaks.R | 120 R/calc_annual_stats.R | 25 R/calc_daily_cumulative_stats.R | 6 R/calc_daily_stats.R | 15 R/calc_flow_percentile.R | 2 R/calc_longterm_daily_stats.R | 10 R/calc_longterm_mean.R | 6 R/calc_longterm_monthly_stats.R | 21 R/calc_longterm_percentile.R | 6 R/calc_monthly_cumulative_stats.R | 4 R/calc_monthly_stats.R | 18 R/compute_annual_frequencies.R | 16 R/compute_annual_trends.R | 13 R/compute_frequency_analysis.R | 355 +- R/compute_full_analysis.R | 108 R/compute_hydat_peak_frequencies.R | 5 R/fill_missing_dates.R | 14 R/plot_annual_cumulative_stats.R | 321 +- R/plot_annual_extremes.R |only R/plot_annual_extremes_year.R |only R/plot_annual_flow_timing.R | 45 R/plot_annual_flow_timing_year.R |only R/plot_annual_highflows.R |only R/plot_annual_lowflows.R | 55 R/plot_annual_means.R | 74 R/plot_annual_normal_days.R |only R/plot_annual_normal_days_year.R |only R/plot_annual_outside_normal.R | 78 R/plot_annual_stats.R | 75 R/plot_annual_stats2.R |only R/plot_annual_symbols.R |only R/plot_daily_cumulative_stats.R | 27 R/plot_daily_stats.R | 62 R/plot_data_screening.R | 50 R/plot_flow_data.R | 91 R/plot_flow_data_symbols.R |only R/plot_flow_duration.R | 68 R/plot_longterm_daily_stats.R | 45 R/plot_longterm_monthly_stats.R | 52 R/plot_missing_dates.R | 129 R/plot_monthly_cumulative_stats.R | 118 R/plot_monthly_means.R |only R/plot_monthly_stats.R | 87 R/plot_monthly_stats2.R |only R/screen_flow_data.R | 67 R/utils.R | 303 +- R/write_flow_data.R | 10 R/write_full_analysis.R | 113 R/zzz.R | 32 build/vignette.rds |binary inst/doc/fasstr.Rmd | 2 inst/doc/fasstr.html | 584 +++- inst/doc/fasstr_frequency_analysis.R | 35 inst/doc/fasstr_frequency_analysis.Rmd | 28 inst/doc/fasstr_frequency_analysis.html | 735 +++-- inst/doc/fasstr_full_analysis.R | 4 inst/doc/fasstr_full_analysis.Rmd | 13 inst/doc/fasstr_full_analysis.html | 630 +++- inst/doc/fasstr_trending_analysis.R | 18 inst/doc/fasstr_trending_analysis.Rmd | 20 inst/doc/fasstr_trending_analysis.html | 806 +++-- inst/doc/fasstr_under_the_hood.html | 650 +++- inst/doc/fasstr_users_guide.R | 349 +- inst/doc/fasstr_users_guide.Rmd | 306 +- inst/doc/fasstr_users_guide.html | 2763 ++++++++++++------- man/calc_all_annual_stats.Rd | 9 man/calc_annual_cumulative_stats.Rd | 10 man/calc_annual_extremes.Rd |only man/calc_annual_highflows.Rd |only man/calc_annual_lowflows.Rd | 6 man/calc_annual_normal_days.Rd |only man/calc_annual_outside_normal.Rd | 4 man/calc_annual_peaks.Rd | 25 man/calc_annual_stats.Rd | 9 man/calc_daily_stats.Rd | 6 man/calc_longterm_mean.Rd | 2 man/calc_longterm_monthly_stats.Rd | 11 man/calc_monthly_stats.Rd | 3 man/compute_annual_frequencies.Rd | 5 man/compute_annual_trends.Rd | 7 man/compute_frequency_analysis.Rd | 17 man/compute_full_analysis.Rd | 8 man/compute_hydat_peak_frequencies.Rd | 2 man/fasstr-package.Rd | 4 man/figures/plot1-1.png |binary man/figures/plot2-1.png |binary man/figures/plot3-1.png |binary man/fill_missing_dates.Rd | 6 man/plot_annual_cumulative_stats.Rd | 11 man/plot_annual_extremes.Rd |only man/plot_annual_extremes_year.Rd |only man/plot_annual_flow_timing.Rd | 3 man/plot_annual_flow_timing_year.Rd |only man/plot_annual_highflows.Rd |only man/plot_annual_lowflows.Rd | 3 man/plot_annual_means.Rd | 9 man/plot_annual_normal_days.Rd |only man/plot_annual_normal_days_year.Rd |only man/plot_annual_outside_normal.Rd | 4 man/plot_annual_stats.Rd | 5 man/plot_annual_stats2.Rd |only man/plot_annual_symbols.Rd |only man/plot_daily_stats.Rd | 12 man/plot_data_screening.Rd | 15 man/plot_flow_data.Rd | 8 man/plot_flow_data_symbols.Rd |only man/plot_flow_duration.Rd | 6 man/plot_longterm_daily_stats.Rd | 12 man/plot_longterm_monthly_stats.Rd | 18 man/plot_missing_dates.Rd | 18 man/plot_monthly_means.Rd |only man/plot_monthly_stats.Rd | 7 man/plot_monthly_stats2.Rd |only man/screen_flow_data.Rd | 16 man/write_full_analysis.Rd | 8 tests/testthat/test-calc_annual_normal_days.R |only tests/testthat/test-plot_annual_annual_normal_days.R |only tests/testthat/test-screen_flow_data.R | 17 vignettes/fasstr.Rmd | 2 vignettes/fasstr_frequency_analysis.Rmd | 28 vignettes/fasstr_full_analysis.Rmd | 13 vignettes/fasstr_trending_analysis.Rmd | 20 vignettes/fasstr_users_guide.Rmd | 306 +- 135 files changed, 7486 insertions(+), 3231 deletions(-)
Title: Infrastructure for Ordering Objects Using Seriation
Description: Infrastructure for ordering objects with an implementation of several
seriation/sequencing/ordination techniques to reorder matrices, dissimilarity
matrices, and dendrograms. Also provides (optimally) reordered heatmaps,
color images and clustering visualizations like dissimilarity plots, and
visual assessment of cluster tendency plots (VAT and iVAT). Hahsler et al (2008) <doi:10.18637/jss.v025.i03>.
Author: Michael Hahsler [aut, cre, cph]
,
Christian Buchta [aut, cph],
Kurt Hornik [aut, cph],
Fionn Murtagh [ctb, cph],
Michael Friendly [ctb],
Michael Brusco [ctb, cph],
Stephanie Stahl [ctb, cph],
Hans-Friedrich Koehn [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between seriation versions 1.3.6 dated 2022-07-16 and 1.4.0 dated 2022-10-21
DESCRIPTION | 25 ++++--- MD5 | 39 ++++++----- NAMESPACE | 4 + NEWS.md | 15 ++++ R/AAA_seriation-package.R | 1 R/permute.R | 124 ++++++++++++++++++++++--------------- R/pimage.R | 16 ++++ R/ser_permutation.R | 1 R/ser_permutation_vector.R | 2 R/seriate.R | 140 +++++++++++++++++++++++------------------- R/seriate.array.R | 19 ++++- R/seriate.dist.R | 8 -- R/seriate.table.R |only R/seriate_CA.R |only README.md | 14 ++-- inst/doc/seriation.pdf |binary man/figures |only man/permute.Rd | 49 +++++++++----- man/pimage.Rd | 9 ++ man/registry_seriate.Rd | 2 man/seriate.Rd | 97 ++++++++++++++++++----------- tests/testthat/test-seriate.R | 22 +++++- 22 files changed, 366 insertions(+), 221 deletions(-)
Title: Recursive Partitioning and Regression Trees
Description: Recursive partitioning for classification,
regression and survival trees. An implementation of most of the
functionality of the 1984 book by Breiman, Friedman, Olshen and Stone.
Author: Terry Therneau [aut],
Beth Atkinson [aut, cre],
Brian Ripley [trl]
Maintainer: Beth Atkinson <atkinson@mayo.edu>
Diff between rpart versions 4.1.16 dated 2022-01-24 and 4.1.19 dated 2022-10-21
ChangeLog | 22 +++---- DESCRIPTION | 8 +- MD5 | 30 ++++----- R/rpart.R | 7 +- build/vignette.rds |binary data/solder.rda |binary inst/doc/longintro.pdf |binary inst/doc/usercode.pdf |binary man/post.rpart.Rd | 7 +- man/text.rpart.Rd | 5 - po/R-fr.po | 148 +++++++++++++++++++++---------------------------- po/fr.po | 33 +++++----- src/func_table.h | 10 +-- src/gini.c | 2 src/rpart.h | 16 +++-- src/xval.c | 3 16 files changed, 142 insertions(+), 149 deletions(-)
Title: Who are You? Bayesian Prediction of Racial Category Using
Surname, First Name, Middle Name, and Geolocation
Description: Predicts individual race/ethnicity using surname, first name, middle name, geolocation,
and other attributes, such as gender and age. The method utilizes Bayes'
Rule (with optional measurement error correction) to compute the posterior probability of each racial category for any given
individual. The package implements methods described in Imai and Khanna (2016)
"Improving Ecological Inference by Predicting Individual Ethnicity from Voter
Registration Records" Political Analysis <DOI:10.1093/pan/mpw001>.
Author: Kabir Khanna [aut],
Brandon Bertelsen [aut, cre],
Santiago Olivella [aut],
Evan Rosenman [aut],
Kosuke Imai [aut]
Maintainer: Brandon Bertelsen <brandon@bertelsen.ca>
Diff between wru versions 1.0.0 dated 2022-06-21 and 1.0.1 dated 2022-10-21
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- R/census_geo_api.R | 10 +++++----- R/predict_race.R | 1 + R/race_prediction_funs.R | 6 ++++-- tests/testthat/test-predict_race.R | 25 +++++++++++++++++++++++-- 6 files changed, 45 insertions(+), 20 deletions(-)
Title: Analysis of Massive SNP Arrays
Description: Easy-to-use, efficient, flexible and scalable tools for analyzing
massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
Author: Florian Prive [aut, cre],
Michael Blum [ths],
Hugues Aschard [ths],
Bjarni Johann Vilhjalmsson [ths]
Maintainer: Florian Prive <florian.prive.21@gmail.com>
Diff between bigsnpr versions 1.10.8 dated 2022-07-09 and 1.11.4 dated 2022-10-21
DESCRIPTION | 20 +++-- MD5 | 58 ++++++++--------- NEWS.md | 45 +++++++------ R/LDpred2.R | 69 +++++++++++++------- R/RcppExports.R | 12 ++- R/bed-class.R | 1 R/bigSNP-class.R | 1 R/bigsnpr-package.R | 1 R/ldsc.R | 13 ++- R/simu-pheno.R | 54 ++++++++++----- R/split-LD.R | 3 README.md | 18 ++--- build/partial.rdb |binary inst/WORDLIST | 1 man/LDpred2.Rd | 23 ++++-- man/bed-methods.Rd | 1 man/bigsnpr-package.Rd | 1 man/snp_codes.Rd | 1 man/snp_ldsc.Rd | 4 - man/snp_ldsplit.Rd | 9 ++ man/snp_simuPheno.Rd | 11 +++ src/RcppExports.cpp | 45 +++++++++++-- src/clumping-utils.h | 6 - src/corr.cpp | 1 src/ld-scores-sfbm.cpp |only src/ldpred2-auto.cpp | 126 +++++++++++++++++++++++++------------ src/optim-MLE-alpha.h |only tests/testthat/test-2-ld-scores.R | 35 ++++++++++ tests/testthat/test-7-OpenMP.R | 31 +++++++++ tests/testthat/test-8-LDpred2.R | 88 +++++++++++++++++++++---- tests/testthat/test-8-simu-pheno.R | 54 +++++++++++++++ 31 files changed, 546 insertions(+), 186 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating and analyzing
transaction data and patterns (frequent itemsets and association rules).
Also provides C implementations of the association mining algorithms Apriori and Eclat.
Hahsler, Gruen and Hornik (2005) <doi:10.18637/jss.v014.i15>.
Author: Michael Hahsler [aut, cre, cph]
,
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph],
Christian Borgelt [ctb, cph],
Ian Johnson [ctb],
Makhlouf Ledmi [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.7-4 dated 2022-08-16 and 1.7-5 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 6 ++++++ R/discretize.R | 6 +++--- inst/doc/arules.pdf |binary man/discretize.Rd | 4 ++-- src/ptree.c | 2 +- src/warm.c | 2 +- 8 files changed, 24 insertions(+), 18 deletions(-)
More information about ShapleyOutlier at CRAN
Permanent link
More information about HomomorphicEncryption at CRAN
Permanent link
Title: Universal Storage Engine for Sparse and Dense Multidimensional
Arrays
Description: The universal storage engine 'TileDB' introduces a
powerful on-disk format for multi-dimensional arrays. It supports
dense and sparse arrays, dataframes and key-values stores, cloud
storage ('S3', 'GCS', 'Azure'), chunked arrays, multiple compression,
encryption and checksum filters, uses a fully multi-threaded
implementation, supports parallel I/O, data versioning ('time
travel'), metadata and groups. It is implemented as an embeddable
cross-platform C++ library with APIs from several languages, and
integrations.
Author: TileDB, Inc. [aut, cph],
Dirk Eddelbuettel [cre]
Maintainer: Dirk Eddelbuettel <dirk@tiledb.com>
Diff between tiledb versions 0.15.0 dated 2022-08-09 and 0.16.0 dated 2022-10-21
DESCRIPTION | 6 - MD5 | 50 ++++---- NAMESPACE | 1 NEWS.md | 41 +++++++ R/Array.R | 24 +++- R/Filter.R | 1 R/Query.R | 10 + R/RcppExports.R | 4 R/SparseMatrix.R | 4 configure | 8 + configure.ac | 6 + inst/examples/deletes.R |only inst/tinytest/test_filter.R | 100 ++++++++++++++++- inst/tinytest/test_group.R | 39 ++++-- inst/tinytest/test_query.R | 20 +++ inst/tinytest/test_sparsematrix.R | 4 inst/tinytest/test_tiledbarray.R | 76 ++++++------- man/tiledb_array_delete_fragments.Rd |only man/tiledb_array_open.Rd | 9 + man/tiledb_filter.Rd | 1 man/tiledb_query.Rd | 10 + src/Makevars.win | 2 src/RcppExports.cpp | 13 ++ src/libtiledb.cpp | 170 +++++++++++++++++++++++------- tools/ci/valgrind/buildAndCheckPackage.sh | 2 tools/ci/valgrind/installDependencies.sh | 2 tools/tiledbVersion.txt | 4 27 files changed, 463 insertions(+), 144 deletions(-)
Title: Polycross Designs ("PolycrossDesigns")
Description: A polycross is the pollination by natural hybridization of a group of genotypes, generally selected, grown in isolation from other compatible genotypes in such a way to promote random open pollination. A particular practical application of the polycross method occurs in the production of a synthetic variety resulting from cross-pollinated plants. Laying out these experiments in appropriate designs, known as polycross designs, would not only save experimental resources but also gather more information from the experiment. Different experimental situations may arise in polycross nurseries which may be requiring different polycross designs (Varghese et. al. (2015) <doi:10.1080/02664763.2015.1043860>. " Experimental designs for open pollination in polycross trials"). This package contains a function named PD() which generates nine types of polycross designs suitable for various experimental situations.
Author: Cini Varghese [aut, ctb],
Seema Jaggi [aut, ctb],
Eldho Varghese [aut, ctb],
Ashutosh Dalal [aut, cre],
Arpan Bhowmik [aut]
Maintainer: Ashutosh Dalal <ashutosh.dalal97@gmail.com>
Diff between PolycrossDesigns versions 1.0.0 dated 2022-10-19 and 1.1.0 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/PD.R | 32 ++++++++++++++++---------------- man/PD.Rd | 8 ++++---- 4 files changed, 27 insertions(+), 27 deletions(-)
More information about PolycrossDesigns at CRAN
Permanent link
Title: Functions to Replicate the Center for Disease Control and
Prevention's 'LTAS' Software in R
Description: A suite of functions for reading in a rate file in XML format,
stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Author: Stephen Bertke [aut, cre]
Maintainer: Stephen Bertke <nioshltas@cdc.gov>
Diff between LTASR versions 0.0.1 dated 2022-04-13 and 0.1.0 dated 2022-10-21
LTASR-0.0.1/LTASR/man/checkPerson.Rd |only LTASR-0.1.0/LTASR/DESCRIPTION | 8 LTASR-0.1.0/LTASR/MD5 | 58 ++- LTASR-0.1.0/LTASR/NAMESPACE | 6 LTASR-0.1.0/LTASR/NEWS.md | 6 LTASR-0.1.0/LTASR/R/checkHistory.R |only LTASR-0.1.0/LTASR/R/checkPerson.R | 38 -- LTASR-0.1.0/LTASR/R/checkStrata.R | 3 LTASR-0.1.0/LTASR/R/exp_strata.R |only LTASR-0.1.0/LTASR/R/expand_dates.R | 71 +++- LTASR-0.1.0/LTASR/R/get_table.R | 49 +- LTASR-0.1.0/LTASR/R/get_table_history.R | 245 +++++++++----- LTASR-0.1.0/LTASR/R/get_table_history_est.R |only LTASR-0.1.0/LTASR/R/mapDeaths.R | 4 LTASR-0.1.0/LTASR/R/parseRate.R | 39 +- LTASR-0.1.0/LTASR/build/vignette.rds |binary LTASR-0.1.0/LTASR/data/us_119ucod_19602020.rda |binary LTASR-0.1.0/LTASR/inst/doc/BasicStrata.R | 4 LTASR-0.1.0/LTASR/inst/doc/BasicStrata.Rmd | 327 +++++++++---------- LTASR-0.1.0/LTASR/inst/doc/BasicStrata.html | 33 + LTASR-0.1.0/LTASR/inst/doc/HistFile.R |only LTASR-0.1.0/LTASR/inst/doc/HistFile.Rmd |only LTASR-0.1.0/LTASR/inst/doc/HistFile.html |only LTASR-0.1.0/LTASR/inst/doc/SMRbyStrata.R |only LTASR-0.1.0/LTASR/inst/doc/SMRbyStrata.Rmd |only LTASR-0.1.0/LTASR/inst/doc/SMRbyStrata.html |only LTASR-0.1.0/LTASR/man/checkStrata.Rd | 1 LTASR-0.1.0/LTASR/man/exp_strata.Rd |only LTASR-0.1.0/LTASR/man/expand_dates.Rd | 20 - LTASR-0.1.0/LTASR/man/get_table.Rd | 16 LTASR-0.1.0/LTASR/man/get_table_history.Rd | 97 ++--- LTASR-0.1.0/LTASR/man/get_table_history_est.Rd |only LTASR-0.1.0/LTASR/man/parseRate.Rd | 2 LTASR-0.1.0/LTASR/tests/testthat/test-expand_dates.R | 7 LTASR-0.1.0/LTASR/vignettes/BasicStrata.Rmd | 327 +++++++++---------- LTASR-0.1.0/LTASR/vignettes/HistFile.Rmd |only LTASR-0.1.0/LTASR/vignettes/SMRbyStrata.Rmd |only 37 files changed, 770 insertions(+), 591 deletions(-)
Title: Test and Item Analysis via Shiny
Description: Package including functions and interactive shiny application
for the psychometric analysis of educational tests, psychological
assessments, health-related and other types of multi-item
measurements, or ratings from multiple raters.
Author: Patricia Martinkova [aut, cre],
Adela Hladka [aut],
Jan Netik [aut],
Ondrej Leder [ctb],
Jakub Houdek [ctb],
Lubomir Stepanek [ctb],
Tomas Jurica [ctb],
Jana Vorlickova [ctb]
Maintainer: Patricia Martinkova <martinkova@cs.cas.cz>
Diff between ShinyItemAnalysis versions 1.4.1 dated 2022-04-15 and 1.4.2 dated 2022-10-21
ShinyItemAnalysis-1.4.1/ShinyItemAnalysis/data/anxiety.rda |only ShinyItemAnalysis-1.4.1/ShinyItemAnalysis/man/anxiety.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/DESCRIPTION | 14 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/MD5 | 167 ++++---- ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/NAMESPACE | 1 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/NEWS.md | 22 + ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/DDplot.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/DistractorAnalysis.R | 6 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/ICCrestricted.R | 3 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/ItemAnalysis.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/dataMedicalkey.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/dataMedicaltest.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_AIBS.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_BFI2.R | 3 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_CZmatura.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_CZmaturaS.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_EPIA.R |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCI.R | 53 ++ ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCIdata.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCIgrads.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCIkey.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCIprepost.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCItest.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HCItestretest.R | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_HeightInventory.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_MSclinical.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_NIH.R | 7 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_TestAnxietyCor.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_anxiety.R | 4 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_gmat.R |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/data_msatb.R |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/fa_parallel.R | 20 - ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/gDiscrim.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/ggWrightMap.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/plotDistractorAnalysis.R | 6 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/recode_nr.R | 1 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/R/startShinyItemAnalysis.R | 69 +-- ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/README.md | 8 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/build/partial.rdb |binary ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/Anxiety.rda |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/EPIA.rda |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/GMAT.rda |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/HCIlong.rda |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/HCItest.rda |binary ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/data/MSATB.rda |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/reporthtml.Rmd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/server/TraditionalAnalysis.R | 9 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/server/Validity.R | 49 +- ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/titlepage.sty | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui.R | 21 - ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiAbout.R | 8 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiDIF.R | 24 - ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiDIF/adjacent.R | 4 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiDIF/cumulative.R | 4 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiDIF/logistic.R | 4 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiDIF/multinomial.R | 6 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiIRT/uiPolyIRT.R | 199 +++++----- ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiReferences.R | 6 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/inst/ShinyItemAnalysis/ui/uiSetting.R | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/AIBS.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/Anxiety.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/BFI2.Rd | 3 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/CZmatura.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/CZmaturaS.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/DDplot.Rd | 8 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/DistractorAnalysis.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/EPIA.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/GMAT.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCI.Rd | 13 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCIdata.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCIgrads.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCIkey.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCIlong.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCIprepost.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCItest.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HCItestretest.Rd | 15 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/HeightInventory.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/ICCrestricted.Rd | 3 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/ItemAnalysis.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/MSATB.Rd |only ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/MSclinical.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/NIH.Rd | 7 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/TestAnxietyCor.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/dataMedicalkey.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/dataMedicaltest.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/fit_blis.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/gDiscrim.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/ggWrightMap.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/plot.sia_parallel.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/plotDistractorAnalysis.Rd | 2 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/recode_nr.Rd | 1 ShinyItemAnalysis-1.4.2/ShinyItemAnalysis/man/startShinyItemAnalysis.Rd | 2 92 files changed, 530 insertions(+), 465 deletions(-)
More information about ShinyItemAnalysis at CRAN
Permanent link
Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar, or using iterated
nested Laplace approximation for fully Bayesian inference. See
Wood (2017) <doi:10.1201/9781315370279> for an overview.
Includes a gam() function, a wide variety of smoothers, 'JAGS'
support and distributions beyond the exponential family.
Author: Simon Wood <simon.wood@r-project.org>
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.8-40 dated 2022-03-29 and 1.8-41 dated 2022-10-21
ChangeLog | 51 ++ DESCRIPTION | 6 MD5 | 107 ++--- NAMESPACE | 6 R/bam.r | 29 + R/coxph.r | 11 R/efam.r | 648 ++++++++++++++++++++++++--------- R/fast-REML.r | 25 - R/gam.fit3.r | 533 ++++++++++++--------------- R/gam.fit4.r | 384 +++++++++++++------ R/gamlss.r | 558 +++++++++++++++++++++------- R/gamm.r | 8 R/inla.r | 2 R/mgcv.r | 216 ++++++++--- R/misc.r | 83 +++- R/plots.r | 184 +++++++-- R/smooth.r | 247 +++++++++++- build/partial.rdb |binary man/bam.Rd | 3 man/chol.down.Rd | 2 man/cnorm.Rd |only man/coxph.Rd | 2 man/coxpht.Rd | 7 man/dpnorm.Rd |only man/factor.smooth.Rd |only man/family.mgcv.Rd | 19 man/formula.gam.Rd | 2 man/gam.Rd | 14 man/gam.control.Rd | 4 man/gam.fit3.Rd | 6 man/gam.fit5.post.proc.Rd | 7 man/gam.outer.Rd | 3 man/gamlss.gH.Rd | 4 man/multinom.Rd | 5 man/plot.gam.Rd | 4 man/predict.bam.Rd | 11 man/predict.gam.Rd | 20 - man/shash.Rd | 17 man/smooth.construct.fs.smooth.spec.Rd | 15 man/smooth.construct.sz.smooth.spec.Rd |only man/smooth.terms.Rd | 17 man/trind.generator.Rd | 32 + man/vcov.gam.Rd | 12 man/vis.gam.Rd | 4 src/Makevars | 5 src/discrete.c | 292 +++++++++++--- src/gdi.c | 9 src/init.c | 12 src/mat.c | 35 + src/matrix.c | 14 src/matrix.h | 4 src/mgcv.c | 4 src/mgcv.h | 22 - src/misc.c | 1 src/ncv.c |only src/qp.c | 17 src/sparse.c | 2 57 files changed, 2634 insertions(+), 1091 deletions(-)
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 2.1-1 dated 2022-04-18 and 3.0-0 dated 2022-10-21
DESCRIPTION | 11 +++--- MD5 | 16 ++++----- NEWS | 9 ++++- R/linalg.R | 4 +- inst/doc/packagesizes.txt | 2 - man/macros/defns.Rd | 21 +++++++++++- src/linalg.c | 78 ++++++++++++++++++++++++++-------------------- src/spasumsymout.h | 33 +++++++++---------- src/sumsymouter.h | 16 +++------ 9 files changed, 111 insertions(+), 79 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 2.2-0 dated 2022-04-18 and 3.0-0 dated 2022-10-21
DESCRIPTION | 17 +++-- MD5 | 146 +++++++++++++++++++++++----------------------- NEWS | 9 ++ data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/btb.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/concrete.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/stonetools.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/doc/packagesizes.txt | 2 man/ants.Rd | 14 ++-- man/betacells.Rd | 3 man/cetaceans.Rd | 2 man/copper.Rd | 2 man/copyExampleFiles.Rd | 4 - man/demohyper.Rd | 2 man/macros/defns.Rd | 21 +++++- man/murchison.Rd | 6 - man/nbfires.Rd | 12 ++- man/residualspaper.Rd | 2 man/waterstriders.Rd | 2 74 files changed, 135 insertions(+), 109 deletions(-)
Title: A Wrapper of the 'react-select' Library
Description: Provides a select control widget for 'Shiny'. It is easily
customizable, and one can easily use HTML in the items and KaTeX to
type mathematics.
Author: Stephane Laurent [aut, cre],
Jed Watson [cph] ,
Clauderic Demers [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between shinySelect versions 1.1.0 dated 2022-09-01 and 1.2.0 dated 2022-10-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 +++++ R/selectControl.R | 2 +- 4 files changed, 12 insertions(+), 7 deletions(-)
Title: Compute MSPE Estimates for the Fay Herriot Model and Nested
Error Regression Model
Description: We describe a new R package entitled 'saeMSPE' for the well-known Fay Herriot model and nested error regression model in small area estimation. Based on this package, it is possible to easily compute various common mean squared predictive error (MSPE) estimators, as well as several existing variance component predictors as a byproduct, for these two models.
Author: Peiwen Xiao [aut, cre],
Xiaohui Liu [aut],
Yuzi Liu [aut],
Shaochu Liu [aut],
Jiming Jiang [ths]
Maintainer: Peiwen Xiao <2569613200@qq.com>
Diff between saeMSPE versions 1.1 dated 2022-09-21 and 1.2 dated 2022-10-21
DESCRIPTION | 11 ++++++----- MD5 | 6 ++++-- data |only man/saeMSPE-package.Rd | 6 +++--- man/wheatarea.Rd |only 5 files changed, 13 insertions(+), 10 deletions(-)
Title: Pearson Distribution System
Description: Implementation of the Pearson distribution system, including full
support for the (d,p,q,r)-family of functions for probability distributions
and fitting via method of moments and maximum likelihood method.
Author: Martin Becker [aut, cre] ,
Stefan Kloeßner [aut] ,
Joel Heinrich [ctb]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between PearsonDS versions 1.2.2 dated 2022-03-29 and 1.2.3 dated 2022-10-21
DESCRIPTION | 14 +++++++------- MD5 | 16 ++++++++-------- NEWS | 12 ++++++++++++ man/PearsonDS.rd | 2 +- man/PearsonIV.rd | 2 +- man/pearsonDiagram.Rd | 2 +- src/QuadDouble.c | 14 ++------------ src/pearson.h | 2 +- src/pearsonIV.c | 2 +- 9 files changed, 34 insertions(+), 32 deletions(-)
Title: Tools for Handling Spatial Objects
Description: Please note that 'maptools' will be retired during 2023, plan transition at your earliest convenience; some functionality will be moved to 'sp'. Set of tools for manipulating geographic data. It includes binary access to 'GSHHG' shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as 'PBSmapping', 'spatstat.geom', 'maps', and others.
Author: Roger Bivand [cre, aut] ,
Nicholas Lewin-Koh [aut],
Edzer Pebesma [ctb],
Eric Archer [ctb],
Adrian Baddeley [ctb],
Nick Bearman [ctb],
Hans-Joerg Bibiko [ctb],
Steven Brey [ctb],
Jonathan Callahan [ctb],
German Carrillo [ctb],
Stephane Dray [ctb],
Dav [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between maptools versions 1.1-4 dated 2022-04-17 and 1.1-5 dated 2022-10-21
maptools-1.1-4/maptools/man/getinfo.shape.Rd |only maptools-1.1-4/maptools/man/lineLabel.Rd |only maptools-1.1-4/maptools/man/pointLabelBase.Rd |only maptools-1.1-4/maptools/man/pointLabelLattice.Rd |only maptools-1.1-4/maptools/man/readShapeLines.Rd |only maptools-1.1-4/maptools/man/readShapePoints.Rd |only maptools-1.1-4/maptools/man/readShapePoly.Rd |only maptools-1.1-4/maptools/man/readShapeSpatial.Rd |only maptools-1.1-5/maptools/DESCRIPTION | 10 maptools-1.1-5/maptools/MD5 | 45 +-- maptools-1.1-5/maptools/NAMESPACE | 237 ++++++++++++------ maptools-1.1-5/maptools/NEWS.md | 10 maptools-1.1-5/maptools/R/AAA.R | 2 maptools-1.1-5/maptools/R/Spatial-methods.R | 4 maptools-1.1-5/maptools/R/SpatialLines-methods.R | 4 maptools-1.1-5/maptools/R/SpatialPoints-methods.R | 4 maptools-1.1-5/maptools/R/SpatialPolys-methods.R | 4 maptools-1.1-5/maptools/R/lineLabel.R | 17 + maptools-1.1-5/maptools/R/pointLabelBase.R | 2 maptools-1.1-5/maptools/R/pointLabelLattice.R | 6 maptools-1.1-5/maptools/R/shapelib.R | 10 maptools-1.1-5/maptools/build/vignette.rds |binary maptools-1.1-5/maptools/data/SplashDams.rda |binary maptools-1.1-5/maptools/data/wrld_simpl.rda |binary maptools-1.1-5/maptools/inst/doc/combine_maptools.pdf |binary maptools-1.1-5/maptools/man/SplashDams.Rd | 2 maptools-1.1-5/maptools/man/as.im.Rd | 16 - maptools-1.1-5/maptools/man/maptools-deprecated.Rd |only 28 files changed, 249 insertions(+), 124 deletions(-)
Title: A Metadata and Text Extraction and Manipulation Tool Set
Description: Provides a function collection to extract metadata, sectioned text and study characteristics from scientific articles in 'NISO-JATS' format. Articles in PDF format can be converted to 'NISO-JATS' with the 'Content ExtRactor and MINEr' ('CERMINE', <https://github.com/CeON/CERMINE>). For convenience, two functions bundle the extraction heuristics: JATSdecoder() converts 'NISO-JATS'-tagged XML files to a structured list with elements title, author, journal, history, 'DOI', abstract, sectioned text and reference list. study.character() extracts multiple study characteristics like number of included studies, statistical methods used, alpha error, power, statistical results, correction method for multiple testing, software used. An estimation of the involved sample size is performed based on reports within the abstract and the reported degrees of freedom within statistical results. In addition, the package contains some useful functions to process text (text2sentences(), text2num(), ng [...truncated...]
Author: Ingmar Boeschen [aut, cre]
Maintainer: Ingmar Boeschen <ingmar.boeschen@uni-hamburg.de>
Diff between JATSdecoder versions 1.1 dated 2022-09-30 and 1.1.1 dated 2022-10-21
DESCRIPTION | 8 +++---- MD5 | 50 +++++++++++++++++++++++---------------------- NAMESPACE | 1 R/JATS_get.abstract.R | 6 ++--- R/JATS_get.aff.R | 4 +-- R/JATS_get.author.R | 7 ++---- R/JATS_get.category.R | 6 ++--- R/JATS_get.country.R | 8 ++++--- R/JATS_get.doi.R | 6 ++--- R/JATS_get.editor.R | 7 +++--- R/JATS_get.history.R | 7 +++--- R/JATS_get.journal.R | 6 ++--- R/JATS_get.keywords.R | 6 ++--- R/JATS_get.references.R | 6 ++--- R/JATS_get.subject.R | 6 ++--- R/JATS_get.tables.R | 7 +++--- R/JATS_get.text.R | 15 +++++++++---- R/JATS_get.title.R | 6 ++--- R/JATS_get.type.R | 6 ++--- R/JATS_get.vol.R | 6 ++--- R/JATSdecoder.R | 7 ++++-- R/character_get.software.R | 1 R/character_get.stats.R | 4 +++ R/helper_letter.convert.R | 46 ++++++++++++++++++++--------------------- R/helper_preCheck.R |only R/study.character.R | 8 ++++--- man/preCheck.Rd |only 27 files changed, 131 insertions(+), 109 deletions(-)
Title: Genetic Analysis Package
Description: As first reported [Zhao, J. H. 2007. "gap: Genetic Analysis Package". J Stat Soft 23(8):1-18.
<doi:10.18637/jss.v023.i08>], it is designed as an integrated package for genetic data
analysis of both population and family data. Currently, it contains functions for
sample size calculations of both population-based and family-based designs, probability
of familial disease aggregation, kinship calculation, statistics in linkage analysis,
and association analysis involving genetic markers including haplotype analysis with or
without environmental covariates. Over years, the package has been developed in-between
many projects hence also in line with the name (gap).
Author: Jing Hua Zhao [aut, cre] ,
Kurt Hornik [ctb],
Brian Ripley [ctb],
Uwe Liggs [ctb],
Achim Zeileis [ctb]
Maintainer: Jing Hua Zhao <jinghuazhao@hotmail.com>
Diff between gap versions 1.2.3-6 dated 2022-05-13 and 1.3-1 dated 2022-10-21
gap-1.2.3-6/gap/R/pqtl2dplot.R |only gap-1.2.3-6/gap/R/pqtl2dplotly.R |only gap-1.2.3-6/gap/R/pqtl3dplotly.R |only gap-1.2.3-6/gap/inst/cases |only gap-1.2.3-6/gap/man/pqtl2dplot.Rd |only gap-1.2.3-6/gap/man/pqtl2dplotly.Rd |only gap-1.2.3-6/gap/man/pqtl3dplotly.Rd |only gap-1.3-1/gap/ChangeLog | 21 gap-1.3-1/gap/DESCRIPTION | 28 gap-1.3-1/gap/INDEX | 12 gap-1.3-1/gap/MD5 | 146 ++- gap-1.3-1/gap/NAMESPACE | 201 +++-- gap-1.3-1/gap/R/2ld.R | 43 - gap-1.3-1/gap/R/ESplot.R | 5 gap-1.3-1/gap/R/METAL_forestplot.R | 6 gap-1.3-1/gap/R/chrs.R |only gap-1.3-1/gap/R/circos.cnvplot.R | 2 gap-1.3-1/gap/R/circos.mhtplot.R | 4 gap-1.3-1/gap/R/circos.mhtplot2.R |only gap-1.3-1/gap/R/fbsize.R | 1 gap-1.3-1/gap/R/gap-package.R | 30 gap-1.3-1/gap/R/hap.score.R | 71 + gap-1.3-1/gap/R/labelManhattan.R |only gap-1.3-1/gap/R/metareg.R | 62 + gap-1.3-1/gap/R/mhtplot.R | 43 + gap-1.3-1/gap/R/mhtplot.trunc.R | 6 gap-1.3-1/gap/R/mia.R | 2 gap-1.3-1/gap/R/miamiplot2.R |only gap-1.3-1/gap/R/mr_forestplot.R |only gap-1.3-1/gap/R/mtdt.R | 62 + gap-1.3-1/gap/R/pedtodot_verbatim.R |only gap-1.3-1/gap/R/qtl2dplot.R |only gap-1.3-1/gap/R/qtl2dplotly.R |only gap-1.3-1/gap/R/qtl3dplotly.R |only gap-1.3-1/gap/R/qtlClassifier.R |only gap-1.3-1/gap/R/snpid.R |only gap-1.3-1/gap/R/utils.R | 85 -- gap-1.3-1/gap/build/partial.rdb |binary gap-1.3-1/gap/build/vignette.rds |binary gap-1.3-1/gap/data/hg18.rda |binary gap-1.3-1/gap/data/hg19.rda |binary gap-1.3-1/gap/data/hg38.rda |binary gap-1.3-1/gap/data/mr.rda |binary gap-1.3-1/gap/inst/doc/gap.R | 103 ++ gap-1.3-1/gap/inst/doc/gap.Rmd | 176 +++- gap-1.3-1/gap/inst/doc/gap.html | 1267 ++++++++++++++++---------------- gap-1.3-1/gap/inst/doc/jss.pdf |binary gap-1.3-1/gap/inst/scripts/ACE.R |only gap-1.3-1/gap/inst/scripts/PD.R |only gap-1.3-1/gap/inst/scripts/SH2B1.R |only gap-1.3-1/gap/inst/scripts/SH2B1.txt.gz |only gap-1.3-1/gap/inst/scripts/pedtodot.sh |only gap-1.3-1/gap/inst/scripts/renum.R |only gap-1.3-1/gap/man/ESplot.Rd | 4 gap-1.3-1/gap/man/LD22.Rd | 2 gap-1.3-1/gap/man/LDkl.Rd | 3 gap-1.3-1/gap/man/METAL_forestplot.Rd | 6 gap-1.3-1/gap/man/chr_pos_a1_a2.Rd |only gap-1.3-1/gap/man/circos.cnvplot.Rd | 2 gap-1.3-1/gap/man/circos.mhtplot.Rd | 9 gap-1.3-1/gap/man/circos.mhtplot2.Rd |only gap-1.3-1/gap/man/gap-internal.Rd | 29 gap-1.3-1/gap/man/gap-package.Rd | 16 gap-1.3-1/gap/man/grid2d.Rd |only gap-1.3-1/gap/man/hmht.control.Rd |only gap-1.3-1/gap/man/inv_chr_pos_a1_a2.Rd |only gap-1.3-1/gap/man/ixy.Rd |only gap-1.3-1/gap/man/klem.Rd | 51 - gap-1.3-1/gap/man/labelManhattan.Rd |only gap-1.3-1/gap/man/metareg.Rd | 78 + gap-1.3-1/gap/man/mht.control.Rd |only gap-1.3-1/gap/man/mhtplot.trunc.Rd | 4 gap-1.3-1/gap/man/mia.Rd | 2 gap-1.3-1/gap/man/miamiplot2.Rd |only gap-1.3-1/gap/man/mr_forestplot.Rd |only gap-1.3-1/gap/man/mtdt.Rd | 75 + gap-1.3-1/gap/man/pedtodot_verbatim.Rd |only gap-1.3-1/gap/man/plot.hap.score.Rd | 33 gap-1.3-1/gap/man/print.hap.score.Rd | 33 gap-1.3-1/gap/man/qtl2dplot.Rd |only gap-1.3-1/gap/man/qtl2dplotly.Rd |only gap-1.3-1/gap/man/qtl3dplotly.Rd |only gap-1.3-1/gap/man/qtlClassifier.Rd |only gap-1.3-1/gap/man/xy.Rd |only gap-1.3-1/gap/src/2k.c | 16 gap-1.3-1/gap/src/gcontrol_c.c | 18 gap-1.3-1/gap/src/gdef.h | 2 gap-1.3-1/gap/src/gif_c.c | 47 - gap-1.3-1/gap/src/hap_c.c | 2 gap-1.3-1/gap/src/makeped_c.c | 150 +-- gap-1.3-1/gap/src/nghds.h | 2 gap-1.3-1/gap/vignettes/gap.Rmd | 176 +++- 92 files changed, 1964 insertions(+), 1172 deletions(-)
Title: Isotope Pattern, Profile and Centroid Calculation for Mass
Spectrometry
Description: Fast and very memory-efficient calculation of isotope patterns,
subsequent convolution to theoretical envelopes (profiles) plus valley
detection and centroidization or intensoid calculation. Batch processing,
resolution interpolation, wrapper, adduct calculations and molecular
formula parsing.
Loos, M., Gerber, C., Corona, F., Hollender, J., Singer, H. (2015)
<doi:10.1021/acs.analchem.5b00941>.
Author: Martin Loos, Christian Gerber
Maintainer: Martin Loos <mloos@envibee.ch>
Diff between enviPat versions 2.4 dated 2019-04-07 and 2.6 dated 2022-10-21
enviPat-2.4/enviPat/NEWS |only enviPat-2.6/enviPat/DESCRIPTION | 14 +-- enviPat-2.6/enviPat/MD5 | 31 ++++---- enviPat-2.6/enviPat/R/check_several.R | 70 ++++++++---------- enviPat-2.6/enviPat/R/envelope.R | 6 - enviPat-2.6/enviPat/R/enviPat.R | 2 enviPat-2.6/enviPat/R/isopattern.R | 98 ++++++++++++-------------- enviPat-2.6/enviPat/R/multiform.R | 107 +++++++++++++---------------- enviPat-2.6/enviPat/R/vdetect.R | 4 - enviPat-2.6/enviPat/data/adducts.rda |binary enviPat-2.6/enviPat/inst/CITATION | 2 enviPat-2.6/enviPat/man/check_several.Rd | 4 - enviPat-2.6/enviPat/man/enviPat-package.Rd | 4 - enviPat-2.6/enviPat/man/isopattern.Rd | 6 - enviPat-2.6/enviPat/man/isotopes.Rd | 2 enviPat-2.6/enviPat/man/multiform.Rd | 8 +- enviPat-2.6/enviPat/src/main.c | 9 ++ 17 files changed, 178 insertions(+), 189 deletions(-)
Title: Tools to Deal with Raster Maps
Description: A collection of tools to deal with raster maps.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>
Diff between adehabitatMA versions 0.3.14 dated 2020-01-13 and 0.3.15 dated 2022-10-21
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- inst/doc/adehabitatMA.pdf |binary src/tests.c | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
Title: Analysis of Animal Movements
Description: A collection of tools for the analysis of animal movements.
Author: Clement Calenge, contributions from Stephane Dray and Manuela Royer
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>
Diff between adehabitatLT versions 0.3.25 dated 2020-01-19 and 0.3.26 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/tests.c | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Home Range Estimation
Description: A collection of tools for the estimation of animals home range.
Author: Clement Calenge, contributions from Scott Fortmann-Roe
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>
Diff between adehabitatHR versions 0.4.19 dated 2021-01-10 and 0.4.20 dated 2022-10-21
adehabitatHR-0.4.19/adehabitatHR/build |only adehabitatHR-0.4.19/adehabitatHR/inst/doc/adehabitatHR.Rnw |only adehabitatHR-0.4.20/adehabitatHR/DESCRIPTION | 8 ++-- adehabitatHR-0.4.20/adehabitatHR/MD5 | 10 ++--- adehabitatHR-0.4.20/adehabitatHR/inst/doc/adehabitatHR.pdf |binary adehabitatHR-0.4.20/adehabitatHR/man/kernelUD.Rd | 2 - adehabitatHR-0.4.20/adehabitatHR/src/tests.c | 24 ++++++------- 7 files changed, 21 insertions(+), 23 deletions(-)
Title: Tailored Knowledge Catalog
Description: Facilitate the management of data from knowledge
resources that are frequently used alone or together
in research environments.
In 'TKCat', knowledge resources are manipulated as modeled database (MDB)
objects. These objects provide access to the data tables along with a general
description of the resource and a detail data model documenting the
tables, their fields and their relationships.
These MDBs are then gathered in catalogs that can be easily
explored an shared.
Finally, 'TKCat' provides tools to easily subset, filter and combine MDBs and
create new catalogs suited for specific needs.
Author: Patrice Godard [aut, cre, cph]
Maintainer: Patrice Godard <patrice.godard@gmail.com>
Diff between TKCat versions 1.0.3 dated 2022-06-07 and 1.0.6 dated 2022-10-21
TKCat-1.0.3/TKCat/inst/examples/metaMDB-examples.R |only TKCat-1.0.6/TKCat/DESCRIPTION | 12 - TKCat-1.0.6/TKCat/MD5 | 30 +- TKCat-1.0.6/TKCat/R/MDB.R | 8 TKCat-1.0.6/TKCat/R/generics.R | 2 TKCat-1.0.6/TKCat/R/shiny-helpers.R | 32 +- TKCat-1.0.6/TKCat/inst/doc/TKCat-User-guide.R | 28 +- TKCat-1.0.6/TKCat/inst/doc/TKCat-User-guide.Rmd | 69 ++---- TKCat-1.0.6/TKCat/inst/doc/TKCat-User-guide.html | 225 +++++++++------------ TKCat-1.0.6/TKCat/inst/examples/fileMDB-examples.R | 2 TKCat-1.0.6/TKCat/inst/examples/memoMDB-examples.R | 7 TKCat-1.0.6/TKCat/inst/pkgdown.yml |only TKCat-1.0.6/TKCat/man/chTKCat.Rd | 4 TKCat-1.0.6/TKCat/man/collection_members.Rd | 2 TKCat-1.0.6/TKCat/man/fileMDB.Rd | 2 TKCat-1.0.6/TKCat/man/memoMDB.Rd | 7 TKCat-1.0.6/TKCat/vignettes/TKCat-User-guide.Rmd | 69 ++---- 17 files changed, 238 insertions(+), 261 deletions(-)
Title: Efficient and Accurate P-Value Computation for Position Weight
Matrices
Description: In putative Transcription Factor Binding Sites (TFBSs)
identification from sequence/alignments,
we are interested in the significance of certain match score.
TFMPvalue provides the accurate calculation of P-value with
score threshold for Position Weight Matrices,
or the score with given P-value.
It is an interface to code originally made available by
Helene Touzet and Jean-Stephane Varre, 2007,
Algorithms Mol Biol:2, 15. <doi:10.1186/1748-7188-2-15>.
Author: Ge Tan <ge_tan@live.com>
Maintainer: Ge Tan <ge_tan@live.com>
Diff between TFMPvalue versions 0.0.8 dated 2018-05-16 and 0.0.9 dated 2022-10-21
DESCRIPTION | 12 +++++------- MD5 | 8 ++++---- src/ArgumentException.cpp | 2 +- src/FileException.cpp | 2 +- src/ParseException.cpp | 2 +- 5 files changed, 12 insertions(+), 14 deletions(-)
Title: Multivariate Nonparametric Methods
Description: A collection of multivariate nonparametric methods, selected in part to support an MS level course in nonparametric statistical methods. Methods include adjustments for multiple comparisons, implementation of multivariate Mann-Whitney-Wilcoxon testing, inversion of these tests to produce a confidence region, some permutation tests for linear models, and some algorithms for calculating exact probabilities associated with one- and two- stage testing involving Mann-Whitney-Wilcoxon statistics. Supported by grant NSF DMS 1712839. See Kolassa and Seifu (2013) <doi:10.1016/j.acra.2013.03.006>.
Author: John E. Kolassa [cre],
Stephane Jankowski [aut]
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between MultNonParam versions 1.3.6 dated 2021-09-30 and 1.3.7 dated 2022-10-21
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NAMESPACE | 1 + R/ecdfcis.R | 2 +- R/tukey.kruskal.test.R | 13 +++++++------ man/prostate.Rd | 6 ++++-- man/sotiriou.Rd | 6 ++++-- 7 files changed, 29 insertions(+), 23 deletions(-)
Title: Lazy Learning for Local Regression
Description: By combining constant, linear, and quadratic local models,
lazy estimates the value of an unknown multivariate function on
the basis of a set of possibly noisy samples of the function
itself. This implementation of lazy learning automatically
adjusts the bandwidth on a query-by-query basis through a
leave-one-out cross-validation.
Author: Mauro Birattari <mauro.birattari@ulb.be> and Gianluca Bontempi
<gianluca.bontempi@ulb.be>
Maintainer: Theo Verhelst <theo.verhelst@ulb.be>
Diff between lazy versions 1.2-17 dated 2022-04-06 and 1.2-18 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/lazy.c | 3 ++- 3 files changed, 8 insertions(+), 7 deletions(-)
Title: Disaster Victim Identification
Description: Joint DNA-based disaster victim identification (DVI), as
described in Vigeland and Egeland (2021)
<doi:10.21203/rs.3.rs-296414/v1>. Identification is performed by
optimising the joint likelihood of all victim samples and reference
individuals. Individual identification probabilities, conditional on
all available information, are derived from the joint solution in the
form of posterior pairing probabilities. 'dvir' is part of the 'ped
suite' collection of packages for pedigree analysis. In particular it
uses 'forrel' for calculation of likelihood ratios.
Author: Thore Egeland [aut, cre] ,
Magnus Dehli Vigeland [aut]
Maintainer: Thore Egeland <thore.egeland@nmbu.no>
Diff between dvir versions 2.1.0 dated 2021-05-18 and 2.2.0 dated 2022-10-21
DESCRIPTION | 40 +++++++++++++------------- MD5 | 40 ++++++++++++++++---------- NAMESPACE | 4 ++ NEWS.md |only R/data.R | 62 ++++++++++++++++++++++++++++++++++++++++ R/dviCompare.R | 9 +++-- R/exclusionMatrix.R |only R/findUndisputed.R | 51 +++++++++++++++++++++++---------- R/jointDVI.R | 70 ++++++++++++++++++++++++++++++++-------------- R/ncomb.R | 5 ++- R/pairwiseLR.R | 7 ++-- R/relabelDVI.R |only README.md | 7 +++- data/exclusionExample.rda |only data/sibPairs.rda |only man/dviCompare.Rd | 7 +++- man/exclusionExample.Rd |only man/exclusionMatrix.Rd |only man/findUndisputed.Rd | 29 +++++++++++++++---- man/icmp.Rd | 2 - man/jointDVI.Rd | 17 +++++++---- man/ncomb.Rd | 3 + man/pairwiseLR.Rd | 3 + man/relabelDVI.Rd |only man/sibPairs.Rd |only man/summariseDVI.Rd |only 26 files changed, 263 insertions(+), 93 deletions(-)
Title: Analysis of Habitat Selection by Animals
Description: A collection of tools for the analysis of habitat selection.
Author: Clement Calenge, contributions from Mathieu Basille
Maintainer: Clement Calenge <clement.calenge@ofb.gouv.fr>
Diff between adehabitatHS versions 0.3.15 dated 2020-01-13 and 0.3.16 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/mahasuhab.r | 3 +-- man/mahasuhab.Rd | 15 +++++++++++++-- src/tests.c | 4 ++-- 5 files changed, 24 insertions(+), 14 deletions(-)
Title: Tracking Geo Code Change of Regional Granularity in Norway
Description: Regional granularity levels in Norway which are depicted by different codes,
have undergone several changes over the years.
Identifying when codes have changed and how many changes have taken place
can be troublesome. This package will help to identify these changes and when the changes
have taken place. One of the limitation of this package is that it is heavily depending
on the codes available from SSB website <https://data.ssb.no/api/klass/v1/api-guide.html>.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between norgeo versions 2.1.0 dated 2022-02-01 and 2.1.1 dated 2022-10-21
DESCRIPTION | 14 - MD5 | 46 ++- NAMESPACE | 1 NEWS.md | 8 R/cast-geo.R | 23 - R/env.R | 2 R/get-code.R | 2 R/save_geo.R | 19 - R/track-change.R | 6 R/zzz.R |only README.md | 33 +- build/vignette.rds |binary inst/doc/use-api.Rmd | 25 + inst/doc/use-api.html | 337 +++++++++++++++++++++----- inst/test-data/cast_2020.rds |only inst/test-data/codeAt.rds |only inst/test-data/grChg_1999_2003.rds |only inst/test-data/merge_2018_2020.rds |only inst/test-data/split_2018_2020.rds |only inst/test-data/trackChangeFylke_2018_2020.rds |only inst/test-data/trackChangeKomm_2017_2020.rds |only man/dataApi.Rd | 2 man/find_correspond.Rd | 1 man/raw.Rd | 2 tests/testthat/test-cast-geo.R |only tests/testthat/test-get-change.R | 5 tests/testthat/test-get-code.R | 5 tests/testthat/test-track-change.R |only vignettes/use-api.Rmd | 25 + 29 files changed, 410 insertions(+), 146 deletions(-)
Title: Tuning for 'mlr3'
Description: Implements methods for hyperparameter tuning with 'mlr3',
e.g. grid search, random search, generalized simulated annealing and
iterated racing. Various termination criteria can be set and
combined. The class 'AutoTuner' provides a convenient way to perform
nested resampling in combination with 'mlr3'.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.14.0 dated 2022-08-25 and 0.15.0 dated 2022-10-21
mlr3tuning-0.14.0/mlr3tuning/man/tnr.Rd |only mlr3tuning-0.15.0/mlr3tuning/DESCRIPTION | 10 mlr3tuning-0.15.0/mlr3tuning/MD5 | 93 ++--- mlr3tuning-0.15.0/mlr3tuning/NAMESPACE | 1 mlr3tuning-0.15.0/mlr3tuning/NEWS.md | 7 mlr3tuning-0.15.0/mlr3tuning/R/ArchiveTuning.R | 63 +-- mlr3tuning-0.15.0/mlr3tuning/R/AutoTuner.R | 111 ++---- mlr3tuning-0.15.0/mlr3tuning/R/ObjectiveTuning.R | 7 mlr3tuning-0.15.0/mlr3tuning/R/Tuner.R | 28 - mlr3tuning-0.15.0/mlr3tuning/R/TunerCmaes.R | 13 mlr3tuning-0.15.0/mlr3tuning/R/TunerDesignPoints.R | 6 mlr3tuning-0.15.0/mlr3tuning/R/TunerGenSA.R | 8 mlr3tuning-0.15.0/mlr3tuning/R/TunerGridSearch.R | 9 mlr3tuning-0.15.0/mlr3tuning/R/TunerIrace.R | 6 mlr3tuning-0.15.0/mlr3tuning/R/TunerNLoptr.R | 13 mlr3tuning-0.15.0/mlr3tuning/R/TunerRandomSearch.R | 1 mlr3tuning-0.15.0/mlr3tuning/R/TuningInstanceMulticrit.R | 69 +-- mlr3tuning-0.15.0/mlr3tuning/R/TuningInstanceSingleCrit.R | 107 ++---- mlr3tuning-0.15.0/mlr3tuning/R/auto_tuner.R | 23 - mlr3tuning-0.15.0/mlr3tuning/R/extract_inner_tuning_archives.R | 43 +- mlr3tuning-0.15.0/mlr3tuning/R/extract_inner_tuning_results.R | 42 +- mlr3tuning-0.15.0/mlr3tuning/R/helper.R | 4 mlr3tuning-0.15.0/mlr3tuning/R/sugar.R | 55 ++- mlr3tuning-0.15.0/mlr3tuning/R/tune.R | 45 ++ mlr3tuning-0.15.0/mlr3tuning/README.md | 173 ++++------ mlr3tuning-0.15.0/mlr3tuning/build/partial.rdb |binary mlr3tuning-0.15.0/mlr3tuning/inst/WORDLIST | 2 mlr3tuning-0.15.0/mlr3tuning/man/ArchiveTuning.Rd | 54 +-- mlr3tuning-0.15.0/mlr3tuning/man/AutoTuner.Rd | 104 +++--- mlr3tuning-0.15.0/mlr3tuning/man/ObjectiveTuning.Rd | 7 mlr3tuning-0.15.0/mlr3tuning/man/Tuner.Rd | 36 -- mlr3tuning-0.15.0/mlr3tuning/man/TuningInstanceMultiCrit.Rd | 84 ++-- mlr3tuning-0.15.0/mlr3tuning/man/TuningInstanceSingleCrit.Rd | 114 ++---- mlr3tuning-0.15.0/mlr3tuning/man/auto_tuner.Rd | 61 +++ mlr3tuning-0.15.0/mlr3tuning/man/extract_inner_tuning_archives.Rd | 32 - mlr3tuning-0.15.0/mlr3tuning/man/extract_inner_tuning_results.Rd | 33 + mlr3tuning-0.15.0/mlr3tuning/man/mlr_sugar.Rd |only mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_cmaes.Rd | 13 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_design_points.Rd | 6 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_gensa.Rd | 15 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_grid_search.Rd | 11 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_irace.Rd | 6 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_nloptr.Rd | 13 mlr3tuning-0.15.0/mlr3tuning/man/mlr_tuners_random_search.Rd | 3 mlr3tuning-0.15.0/mlr3tuning/man/ti.Rd |only mlr3tuning-0.15.0/mlr3tuning/man/tune.Rd | 72 +++- mlr3tuning-0.15.0/mlr3tuning/tests/testthat/test_TunerGenSA.R | 2 mlr3tuning-0.15.0/mlr3tuning/tests/testthat/test_extract_inner_tuning_results.R | 36 ++ mlr3tuning-0.15.0/mlr3tuning/tests/testthat/test_tune.R | 14 49 files changed, 902 insertions(+), 753 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-19 0.5.0
2022-06-03 0.4.1
2022-03-03 0.3.1
2022-02-18 0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-08 0.6.0
Title: Excel Connector for R
Description: Provides comprehensive functionality to read, write and format Excel data.
Author: Mirai Solutions GmbH [aut],
Martin Studer [cre],
The Apache Software Foundation [ctb, cph] ,
Graph Builder [ctb, cph] ,
Brett Woolridge [ctb, cph]
Maintainer: Martin Studer <martin.studer@mirai-solutions.com>
Diff between XLConnect versions 1.0.5 dated 2021-10-01 and 1.0.6 dated 2022-10-21
XLConnect-1.0.5/XLConnect/inst/java/XLConnect-1.0.3.jar |only XLConnect-1.0.5/XLConnect/inst/java/curvesapi-1.06.jar |only XLConnect-1.0.6/XLConnect/DESCRIPTION | 12 XLConnect-1.0.6/XLConnect/MD5 | 73 ++-- XLConnect-1.0.6/XLConnect/NEWS | 24 - XLConnect-1.0.6/XLConnect/R/J.R |only XLConnect-1.0.6/XLConnect/R/onLoad.R | 36 +- XLConnect-1.0.6/XLConnect/R/workbook.appendNamedRegion.R | 8 XLConnect-1.0.6/XLConnect/R/workbook.appendWorksheet.R | 108 +++--- XLConnect-1.0.6/XLConnect/R/workbook.getForceFormulaRecalculation.R | 94 ++--- XLConnect-1.0.6/XLConnect/R/workbook.setForceFormulaRecalculation.R | 100 ++--- XLConnect-1.0.6/XLConnect/R/workbook.setMissingValue.R | 4 XLConnect-1.0.6/XLConnect/R/workbook.writeNamedRegion.R | 6 XLConnect-1.0.6/XLConnect/R/workbook.writeWorksheet.R | 13 XLConnect-1.0.6/XLConnect/README.md | 4 XLConnect-1.0.6/XLConnect/build/vignette.rds |binary XLConnect-1.0.6/XLConnect/inst/COPYRIGHTS | 32 - XLConnect-1.0.6/XLConnect/inst/doc/XLConnect.Rnw | 8 XLConnect-1.0.6/XLConnect/inst/doc/XLConnect.pdf |binary XLConnect-1.0.6/XLConnect/inst/doc/XLConnectImpatient.Rnw | 7 XLConnect-1.0.6/XLConnect/inst/doc/XLConnectImpatient.pdf |binary XLConnect-1.0.6/XLConnect/inst/java/XLConnect-1.0.6.jar |only XLConnect-1.0.6/XLConnect/inst/java/curvesapi-1.07.jar |only XLConnect-1.0.6/XLConnect/inst/unitTests/resources/testBug170.xlsx |only XLConnect-1.0.6/XLConnect/inst/unitTests/resources/testWorkbookOverwriteFormulas.xls |only XLConnect-1.0.6/XLConnect/inst/unitTests/resources/testWorkbookOverwriteFormulas.xlsx |only XLConnect-1.0.6/XLConnect/inst/unitTests/runit.dataframeConversion.R | 37 +- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.workbook.setForceFormulaRecalculation.R |only XLConnect-1.0.6/XLConnect/inst/unitTests/runit.workbook.writeNamedRegion.R | 175 +++++----- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.workbook.writeWorksheet.R | 126 ++++--- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.writeAndReadNamedRegion.R | 43 +- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.writeAndReadWorksheet.R | 45 +- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.writeNamedRegionToFile.R | 56 +-- XLConnect-1.0.6/XLConnect/inst/unitTests/runit.writeWorksheetToFile.R | 41 +- XLConnect-1.0.6/XLConnect/man/appendNamedRegion-methods.Rd | 128 +++---- XLConnect-1.0.6/XLConnect/man/readNamedRegion-methods.Rd | 6 XLConnect-1.0.6/XLConnect/man/setDataFormat-methods.Rd | 142 +++----- XLConnect-1.0.6/XLConnect/man/setDataFormatForType-methods.Rd | 126 +++---- XLConnect-1.0.6/XLConnect/man/writeNamedRegion-methods.Rd | 4 XLConnect-1.0.6/XLConnect/man/writeWorksheet-methods.Rd | 6 XLConnect-1.0.6/XLConnect/vignettes/XLConnect.Rnw | 8 XLConnect-1.0.6/XLConnect/vignettes/XLConnectImpatient.Rnw | 7 42 files changed, 780 insertions(+), 699 deletions(-)
Title: Different Methods for Stratified Sampling
Description: Integrating a stratified structure in the population in a sampling design can considerably reduce the variance of the Horvitz-Thompson estimator. We propose in this package different methods to handle the selection of a balanced sample in stratified population. For more details see Raphaël Jauslin, Esther Eustache and Yves Tillé (2021) <doi:10.1007/s42081-021-00134-y>. The package propose also a method based on optimal transport and balanced sampling, see Raphaël Jauslin and Yves Tillé <arXiv:2105.08379>.
Author: Raphael Jauslin [aut, cre] ,
Esther Eustache [aut],
Bardia Panahbehagh [aut] ,
Yves Tille [aut]
Maintainer: Raphael Jauslin <raphael.jauslin@unine.ch>
Diff between StratifiedSampling versions 0.3.0 dated 2021-09-24 and 0.4.0 dated 2022-10-21
StratifiedSampling-0.3.0/StratifiedSampling/inst/carren_simu.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/install.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/nhanes.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/test-balstrat.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/test-fbs.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/test-stratifiedcube.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/test_osod.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/testvignettes.R |only StratifiedSampling-0.3.0/StratifiedSampling/inst/varsimu.R |only StratifiedSampling-0.4.0/StratifiedSampling/DESCRIPTION | 21 StratifiedSampling-0.4.0/StratifiedSampling/MD5 | 106 +- StratifiedSampling-0.4.0/StratifiedSampling/NAMESPACE | 17 StratifiedSampling-0.4.0/StratifiedSampling/NEWS.md | 10 StratifiedSampling-0.4.0/StratifiedSampling/R/RcppExports.R | 429 +++++++++ StratifiedSampling-0.4.0/StratifiedSampling/R/balseq.R |only StratifiedSampling-0.4.0/StratifiedSampling/R/balstrat.R | 4 StratifiedSampling-0.4.0/StratifiedSampling/R/bsmatch.R | 190 ++-- StratifiedSampling-0.4.0/StratifiedSampling/R/fbs.R | 2 StratifiedSampling-0.4.0/StratifiedSampling/R/ffphase.R | 2 StratifiedSampling-0.4.0/StratifiedSampling/R/findB.R | 2 StratifiedSampling-0.4.0/StratifiedSampling/R/harmonize.R | 168 +-- StratifiedSampling-0.4.0/StratifiedSampling/R/landing.R | 66 - StratifiedSampling-0.4.0/StratifiedSampling/R/otmatch.R | 292 +++--- StratifiedSampling-0.4.0/StratifiedSampling/R/stratifiedcube.R | 27 StratifiedSampling-0.4.0/StratifiedSampling/R/sys_deville.R |only StratifiedSampling-0.4.0/StratifiedSampling/R/varStrat.R | 4 StratifiedSampling-0.4.0/StratifiedSampling/README.md | 70 + StratifiedSampling-0.4.0/StratifiedSampling/build/vignette.rds |binary StratifiedSampling-0.4.0/StratifiedSampling/inst/doc/ot_matching.Rmd | 452 +++++----- StratifiedSampling-0.4.0/StratifiedSampling/inst/doc/ot_matching.html | 157 ++- StratifiedSampling-0.4.0/StratifiedSampling/man/balseq.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/balstrat.Rd | 104 +- StratifiedSampling-0.4.0/StratifiedSampling/man/c_bound2.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/cps.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/disj.Rd | 50 - StratifiedSampling-0.4.0/StratifiedSampling/man/disjMatrix.Rd | 54 - StratifiedSampling-0.4.0/StratifiedSampling/man/distUnitk.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/fbs.Rd | 108 +- StratifiedSampling-0.4.0/StratifiedSampling/man/ffphase.Rd | 102 +- StratifiedSampling-0.4.0/StratifiedSampling/man/findB.Rd | 72 - StratifiedSampling-0.4.0/StratifiedSampling/man/gencalibRaking.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/landingRM.Rd | 85 - StratifiedSampling-0.4.0/StratifiedSampling/man/maxentpi2.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/ncat.Rd | 52 - StratifiedSampling-0.4.0/StratifiedSampling/man/osod.Rd | 4 StratifiedSampling-0.4.0/StratifiedSampling/man/pikfromq.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/piktfrompik.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/qfromw.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/sfromq.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/stratifiedcube.Rd | 100 +- StratifiedSampling-0.4.0/StratifiedSampling/man/sys_deville.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/sys_devillepi2.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/vApp.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/vDBS.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/man/vEst.Rd |only StratifiedSampling-0.4.0/StratifiedSampling/src/Makevars | 2 StratifiedSampling-0.4.0/StratifiedSampling/src/RcppExports.cpp | 175 +++ StratifiedSampling-0.4.0/StratifiedSampling/src/c_bound.cpp | 52 + StratifiedSampling-0.4.0/StratifiedSampling/src/c_bound.h | 3 StratifiedSampling-0.4.0/StratifiedSampling/src/calibRaking.cpp | 190 ++++ StratifiedSampling-0.4.0/StratifiedSampling/src/disj.cpp | 6 StratifiedSampling-0.4.0/StratifiedSampling/src/distUnitk.cpp |only StratifiedSampling-0.4.0/StratifiedSampling/src/distUnitk.h |only StratifiedSampling-0.4.0/StratifiedSampling/src/inclprob.cpp | 2 StratifiedSampling-0.4.0/StratifiedSampling/src/maxent.cpp |only StratifiedSampling-0.4.0/StratifiedSampling/src/osod.cpp | 108 ++ StratifiedSampling-0.4.0/StratifiedSampling/src/osod.h |only StratifiedSampling-0.4.0/StratifiedSampling/src/var_balanced.cpp |only StratifiedSampling-0.4.0/StratifiedSampling/vignettes/ot_matching.Rmd | 452 +++++----- StratifiedSampling-0.4.0/StratifiedSampling/vignettes/ref.bib |only 70 files changed, 2380 insertions(+), 1360 deletions(-)
More information about StratifiedSampling at CRAN
Permanent link
Title: A Wrapper of the JavaScript Library 'jsTree'
Description: Creates interactive trees that can be included in 'Shiny'
apps and R markdown documents. A tree allows to represent hierarchical
data (e.g. the contents of a directory). Similar to the 'shinyTree'
package but offers more features and options, such as the grid
extension, restricting the drag-and-drop behavior, and settings for
the search functionality. It is possible to attach some data to the
nodes of a tree and then to get these data in 'Shiny' when a node is
selected. Also provides a 'Shiny' gadget allowing to manipulate one or
more folders, and a 'Shiny' module allowing to navigate in the server
side file system.
Author: Stephane Laurent [aut, cre],
jQuery contributors [ctb, cph] ,
Ivan Bozhanov [ctb, cph] ,
Vedran Opacic [ctb, cph] ,
Avi Deitcher [ctb, cph] ,
Philip Hutchison [ctb, cph] ,
Terence Eden [ctb, cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jsTreeR versions 2.1.0 dated 2022-07-06 and 2.2.0 dated 2022-10-21
jsTreeR-2.1.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/jstree.js |only jsTreeR-2.1.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/themes/default-dark/style.css |only jsTreeR-2.1.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/themes/default/style.css |only jsTreeR-2.2.0/jsTreeR/DESCRIPTION | 6 jsTreeR-2.2.0/jsTreeR/MD5 | 55 jsTreeR-2.2.0/jsTreeR/NEWS.md | 183 jsTreeR-2.2.0/jsTreeR/R/treeNavigator.R | 422 jsTreeR-2.2.0/jsTreeR/R/zzz.R | 38 jsTreeR-2.2.0/jsTreeR/inst/examples/imageIcon/global.R | 52 jsTreeR-2.2.0/jsTreeR/inst/examples/imageIcon/server.R | 30 jsTreeR-2.2.0/jsTreeR/inst/examples/imageIcon/ui.R | 44 jsTreeR-2.2.0/jsTreeR/inst/examples/treeNavigator/global.R | 234 jsTreeR-2.2.0/jsTreeR/inst/examples/treeNavigator/server.R | 80 jsTreeR-2.2.0/jsTreeR/inst/examples/treeNavigator/ui.R | 16 jsTreeR-2.2.0/jsTreeR/inst/htmlwidgets/jstreer.js | 645 - jsTreeR-2.2.0/jsTreeR/inst/htmlwidgets/lib/jstree/dist/jstree.min.js | 4 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/OtherIcons.css | 48 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/c.svg | 16 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/cpp.svg | 24 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/css.svg | 162 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/excel.svg | 48 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/haskell.svg | 18 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/html.svg | 114 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/r.svg | 26 jsTreeR-2.2.0/jsTreeR/inst/www/OtherIcons/yaml.svg | 2 jsTreeR-2.2.0/jsTreeR/inst/www/SuperTinyIcons/SuperTinyIcons.css | 3876 ++++---- jsTreeR-2.2.0/jsTreeR/inst/www/SuperTinyIcons/SuperTinyIcons.json | 4706 +++++----- jsTreeR-2.2.0/jsTreeR/inst/www/treeNavigator.css | 66 jsTreeR-2.2.0/jsTreeR/inst/www/treeNavigator.js | 146 jsTreeR-2.2.0/jsTreeR/man/treeNavigator-module.Rd | 266 30 files changed, 5665 insertions(+), 5662 deletions(-)
Title: A Simple and Robust JSON Parser and Generator for R
Description: A reasonably fast JSON parser and generator, optimized for statistical
data and the web. Offers simple, flexible tools for working with JSON in R, and
is particularly powerful for building pipelines and interacting with a web API.
The implementation is based on the mapping described in the vignette (Ooms, 2014).
In addition to converting JSON data from/to R objects, 'jsonlite' contains
functions to stream, validate, and prettify JSON data. The unit tests included
with the package verify that all edge cases are encoded and decoded consistently
for use with dynamic data in systems and applications.
Author: Jeroen Ooms [aut, cre] ,
Duncan Temple Lang [ctb],
Lloyd Hilaiel [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between jsonlite versions 1.8.2 dated 2022-10-02 and 1.8.3 dated 2022-10-21
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS | 3 +++ inst/doc/json-aaquickstart.html | 16 +++++----------- inst/doc/json-apis.html | 14 ++++---------- inst/doc/json-mapping.pdf |binary inst/doc/json-paging.html | 14 ++++---------- src/push_parser.h | 2 +- src/yajl/yajl_tree.c | 2 +- 9 files changed, 29 insertions(+), 44 deletions(-)
Title: Extracting and Visualizing Output from 'jagsUI'
Description: Tools are provided to streamline Bayesian analyses in 'JAGS' using
the 'jagsUI' package. Included are functions for extracting output in
simpler format, functions for streamlining assessment of convergence, and
functions for producing summary plots of output. Also included is a
function that provides a simple template for running 'JAGS' from 'R'.
Referenced materials can be found at <DOI:10.1214/ss/1177011136>.
Author: Matt Tyers [aut, cre]
Maintainer: Matt Tyers <matttyersstat@gmail.com>
Diff between jagshelper versions 0.1.6 dated 2022-10-14 and 0.1.8 dated 2022-10-21
DESCRIPTION | 8 ++-- MD5 | 14 +++---- NEWS.md | 8 ++++ R/jagshelper1.R | 75 +++++++++++++++++++++++++++++++++----- inst/doc/jagshelper-vignette.html | 2 - man/comparedens.Rd | 17 +++++++- man/jagshelper-package.Rd | 4 +- man/overlayenvelope.Rd | 3 + 8 files changed, 107 insertions(+), 24 deletions(-)
Title: Fitting Linear Models with Endogenous Regressors using Latent
Instrumental Variables
Description: Fits linear models with endogenous regressor using latent instrumental variable approaches.
The methods included in the package are Lewbel's (1997) <doi:10.2307/2171884> higher moments approach as well as
Lewbel's (2012) <doi:10.1080/07350015.2012.643126> heteroscedasticity approach, Park and Gupta's (2012) <doi:10.1287/mksc.1120.0718> joint estimation method
that uses Gaussian copula and Kim and Frees's (2007) <doi:10.1007/s11336-007-9008-1> multilevel generalized
method of moment approach that deals with endogeneity in a multilevel setting.
These are statistical techniques to address the endogeneity problem where no external instrumental variables are needed.
Note that with version 2.0.0 sweeping changes were introduced which greatly improve functionality and usability but break backwards compatibility.
Author: Raluca Gui [cre, aut],
Markus Meierer [aut],
Rene Algesheimer [aut],
Patrik Schilter [aut]
Maintainer: Raluca Gui <raluca.gui@gmail.com>
Diff between REndo versions 2.4.6 dated 2022-08-23 and 2.4.7 dated 2022-10-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/f_multilevelIV.R | 6 ++---- tests/testthat/test-inputchecks_multilevel.R | 4 ++-- 5 files changed, 19 insertions(+), 14 deletions(-)
Title: Pie, Donut and Rose Pie Plots
Description: Create pie, donut and rose pie plot with 'ggplot2'.
Author: Yabing Song [aut, cre]
Maintainer: Yabing Song <songyb0519@gmail.com>
Diff between ggpie versions 0.2.2 dated 2022-06-27 and 0.2.4 dated 2022-10-21
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Title: A Combined Interaction Test for Unreplicated Two-Way Tables
Description: There are several non-functional-form-based interaction tests for testing interaction in unreplicated two-way layouts. However, no single test can detect all patterns of possible interaction and the tests are sensitive to a particular pattern of interaction. This package combines six non-functional-form-based interaction tests for testing additivity. These six tests were proposed by Boik (1993) <doi:10.1080/02664769300000004>, Piepho (1994), Kharrati-Kopaei and Sadooghi-Alvandi (2007) <doi:10.1080/03610920701386851>, Franck et al. (2013) <doi:10.1016/j.csda.2013.05.002>, Malik et al. (2016) <doi:10.1080/03610918.2013.870196> and Kharrati-Kopaei and Miller (2016) <doi:10.1080/00949655.2015.1057821>. The p-values of these six tests are combined by Bonferroni, Sidak, Jacobi polynomial expansion, and the Gaussian copula methods to provide researchers with a testing approach which leverages many existing methods to detect disparate forms of non-additivity. This [...truncated...]
Author: Zahra Shenavari [aut],
Hossein Haghbin [aut, cre] ,
Mahmood Kharrati-Kopaei [aut] ,
Seyed Morteza Najibi [aut]
Maintainer: Hossein Haghbin <haghbin@pgu.ac.ir>
Diff between combinIT versions 1.5.0 dated 2022-06-17 and 2.0.0 dated 2022-10-21
combinIT-1.5.0/combinIT/R/CPI_test.R |only combinIT-1.5.0/combinIT/man/Boik.test.Rd |only combinIT-1.5.0/combinIT/man/CPI.test.Rd |only combinIT-1.5.0/combinIT/man/Franck.test.Rd |only combinIT-1.5.0/combinIT/man/KKM.test.Rd |only combinIT-1.5.0/combinIT/man/KKSA.test.Rd |only combinIT-1.5.0/combinIT/man/Malik.test.Rd |only combinIT-1.5.0/combinIT/man/Piepho.test.Rd |only combinIT-1.5.0/combinIT/man/comb.Rd |only combinIT-1.5.0/combinIT/man/interactionplot.Rd |only combinIT-1.5.0/combinIT/man/kpr.Rd |only combinIT-2.0.0/combinIT/DESCRIPTION | 13 +- combinIT-2.0.0/combinIT/MD5 | 58 +++++++------ combinIT-2.0.0/combinIT/NAMESPACE | 18 ++-- combinIT-2.0.0/combinIT/NEWS.md | 25 ++--- combinIT-2.0.0/combinIT/R/Boik_test.R | 40 ++++----- combinIT-2.0.0/combinIT/R/CI_test.R |only combinIT-2.0.0/combinIT/R/Franck_test.R | 44 ++++----- combinIT-2.0.0/combinIT/R/ITtestClass_methods.R | 10 +- combinIT-2.0.0/combinIT/R/KKM_test.R | 26 ++--- combinIT-2.0.0/combinIT/R/KKSA_test.R | 52 +++++------ combinIT-2.0.0/combinIT/R/Malik_test.R | 27 ++---- combinIT-2.0.0/combinIT/R/Piepho_test.R | 30 +++--- combinIT-2.0.0/combinIT/R/combtest_methods.R | 18 ++-- combinIT-2.0.0/combinIT/R/internal.R | 106 ++++++++++-------------- combinIT-2.0.0/combinIT/R/plots.R | 6 - combinIT-2.0.0/combinIT/R/utiles.R | 39 ++++++++ combinIT-2.0.0/combinIT/man/Boik_test.Rd |only combinIT-2.0.0/combinIT/man/CI_test.Rd |only combinIT-2.0.0/combinIT/man/Franck_test.Rd |only combinIT-2.0.0/combinIT/man/KKM_test.Rd |only combinIT-2.0.0/combinIT/man/KKSA_test.Rd |only combinIT-2.0.0/combinIT/man/Malik_test.Rd |only combinIT-2.0.0/combinIT/man/Piepho_test.Rd |only combinIT-2.0.0/combinIT/man/interaction_plot.Rd |only combinIT-2.0.0/combinIT/src/fastcodes.cpp | 8 - combinIT-2.0.0/combinIT/tests |only 37 files changed, 277 insertions(+), 243 deletions(-)
Title: A Friendly Package Manager
Description: Manage project dependencies from your DESCRIPTION file. Create a reproducible virtual environment with minimal additional files in your project. Provides tools to add, remove, and update dependencies as well as install existing dependencies with a single function.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>
Diff between jetpack versions 0.5.2 dated 2022-01-28 and 0.5.3 dated 2022-10-21
jetpack-0.5.2/jetpack/tests/testthat/test-jetpack.R |only jetpack-0.5.3/jetpack/DESCRIPTION | 8 - jetpack-0.5.3/jetpack/MD5 | 46 +++++----- jetpack-0.5.3/jetpack/NEWS.md | 6 + jetpack-0.5.3/jetpack/R/check.R | 2 jetpack-0.5.3/jetpack/R/global.R | 6 - jetpack-0.5.3/jetpack/R/helpers.R | 22 ++-- jetpack-0.5.3/jetpack/R/init.R | 4 jetpack-0.5.3/jetpack/R/load.R | 3 jetpack-0.5.3/jetpack/R/migrate.R | 4 jetpack-0.5.3/jetpack/R/outdated.R | 2 jetpack-0.5.3/jetpack/R/run.R | 4 jetpack-0.5.3/jetpack/R/update.R | 4 jetpack-0.5.3/jetpack/tests/testthat.R | 4 jetpack-0.5.3/jetpack/tests/testthat/helper-setup.R | 10 +- jetpack-0.5.3/jetpack/tests/testthat/test-all.R |only jetpack-0.5.3/jetpack/tests/testthat/test-bioconductor.R | 6 - jetpack-0.5.3/jetpack/tests/testthat/test-check.R |only jetpack-0.5.3/jetpack/tests/testthat/test-cli.R | 46 ++++++++-- jetpack-0.5.3/jetpack/tests/testthat/test-github.R |only jetpack-0.5.3/jetpack/tests/testthat/test-global.R | 8 + jetpack-0.5.3/jetpack/tests/testthat/test-init.R |only jetpack-0.5.3/jetpack/tests/testthat/test-install-deployment.R |only jetpack-0.5.3/jetpack/tests/testthat/test-install.R |only jetpack-0.5.3/jetpack/tests/testthat/test-local.R |only jetpack-0.5.3/jetpack/tests/testthat/test-migrate.R | 10 +- jetpack-0.5.3/jetpack/tests/testthat/test-remove.R |only jetpack-0.5.3/jetpack/tests/testthat/test-update-renv.R |only jetpack-0.5.3/jetpack/tests/testthat/test-update.R | 15 ++- 29 files changed, 140 insertions(+), 70 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-09 1.1.0
2022-04-22 1.0.2