Title: Straightforward 'NetCDF' Metadata
Description: Extract metadata from 'NetCDF' data sources, these can be files, file handles or
servers. This package leverages and extends the lower level functions of the 'RNetCDF' package
providing a consistent set of functions that all return data frames. We introduce named concepts
of 'grid', 'axis' and 'source' which are all meaningful entities without formal definition in the
'NetCDF' library <https://www.unidata.ucar.edu/software/netcdf/>. 'RNetCDF' matches the library
itself with only the named concepts of 'variables', 'dimensions' and 'attributes'.
Author: Michael Sumner [aut, cre],
Tomas Remenyi [ctb],
Ben Raymond [ctb],
David Blodgett [ctb],
Milton Woods [ctb]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between ncmeta versions 0.3.0 dated 2020-08-27 and 0.3.5 dated 2022-10-26
DESCRIPTION | 15 MD5 | 24 - NEWS.md | 145 +++--- R/nc-gridmapping.R | 772 +++++++++++++++++----------------- R/nc-prj.R | 18 R/nc_axes.R | 5 R/nc_inq_file.R | 11 R/nc_var.R | 16 README.md | 18 man/nc_inq.Rd | 11 tests/testthat/test-attributes.R | 16 tests/testthat/test-file.R | 16 tests/testthat/test-gridmapping-prj.R | 18 13 files changed, 545 insertions(+), 540 deletions(-)
Title: Google's Compact Language Detector 2
Description: Bindings to Google's C++ library Compact Language Detector 2
(see <https://github.com/cld2owners/cld2#readme> for more information). Probabilistically
detects over 80 languages in plain text or HTML. For mixed-language input it returns the
top three detected languages and their approximate proportion of the total classified
text bytes (e.g. 80% English and 20% French out of 1000 bytes). There is also a 'cld3'
package on CRAN which uses a neural network model instead.
Author: Jeroen Ooms [aut, cre] ,
Dirk Sites [cph]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between cld2 versions 1.2.3 dated 2022-10-01 and 1.2.4 dated 2022-10-26
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 3 +++ src/libcld2/internal/compact_lang_det_hint_code.cc | 2 +- src/libcld2/internal/compact_lang_det_impl.cc | 2 +- src/libcld2/internal/debug.cc | 6 +++--- 6 files changed, 16 insertions(+), 13 deletions(-)
Title: Univariate GARCH Models
Description: ARFIMA, in-mean, external regressors and various GARCH flavors, with methods for fit, forecast, simulation, inference and plotting.
Author: Alexios Galanos [aut, cre],
Tobias Kley [ctb]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between rugarch versions 1.4-8 dated 2022-04-19 and 1.4-9 dated 2022-10-26
ChangeLog | 4 DESCRIPTION | 9 - MD5 | 16 - README.md | 4 inst/doc/Introduction_to_the_rugarch_package.pdf |binary man/sp500ret.Rd | 2 man/spyreal.Rd | 2 src/gig.c | 193 ++++++++++++----------- src/gig.h | 2 9 files changed, 129 insertions(+), 103 deletions(-)
Title: Matching Event Data by Location, Time and Type
Description: Framework for merging and disambiguating event data based on spatiotemporal co-occurrence and secondary event characteristics. It can account for intrinsic "fuzziness" in the coding of events, varying event taxonomies and different geo-precision codes.
Author: Karsten Donnay and Eric Dunford
Maintainer: Karsten Donnay <kdonnay@gmx.net>
Diff between meltt versions 0.4.2 dated 2022-03-09 and 0.4.3 dated 2022-10-26
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 3 ++- NEWS | 4 ++++ R/meltt.R | 2 +- R/meltt_validate.R | 11 ++++++++--- README.md | 4 ++-- inst/python/match.py | 2 +- 8 files changed, 31 insertions(+), 21 deletions(-)
Title: Lioness Algorithm (LA)
Description: Contains Lioness Algorithm (LA) for finding optimal designs over continuous design space, optimal Latin hypercube designs, and optimal order-of-addition designs. LA is a brand new nature-inspired meta-heuristic optimization algorithm. Detailed methodologies of LA and its implementation on numerical simulations can be found at Hongzhi Wang, Qian Xiao and Abhyuday Mandal (2021) <arXiv:2010.09154>.
Author: Hongzhi Wang [aut, cre],
Qian Xiao [aut],
Abhyuday Mandal [aut]
Maintainer: Hongzhi Wang <wanghongzhi.ut@gmail.com>
Diff between LA versions 2.1 dated 2022-05-11 and 2.2 dated 2022-10-26
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- NEWS.md | 14 +++++++++++--- R/RD_for_LA_LHD.R | 32 ++++++++++++++++---------------- R/RD_for_LA_OofA.R | 10 +++++----- R/RD_for_LA_Opt.R | 28 ++++++++++++++-------------- R/RcppExports.R | 4 ++-- man/LA_LHDC.Rd | 22 +++++++++++----------- man/LA_OofAC.Rd | 6 +++--- man/LA_OptC.Rd | 26 ++++++++++++++------------ src/LA.cpp | 4 ++-- src/RcppExports.cpp | 8 ++++---- 12 files changed, 99 insertions(+), 89 deletions(-)
Title: Hurst-Kolmogorov Process
Description: Methods to make inference about the Hurst-Kolmogorov (fractional Gaussian
noise, fGn) and the AR(1) process. Related time series trend tests are also
included.
Author: Hristos Tyralis [aut, cre]
Maintainer: Hristos Tyralis <montchrister@gmail.com>
Diff between HKprocess versions 0.0-2 dated 2016-01-14 and 0.1-1 dated 2022-10-26
DESCRIPTION | 30 +++++++++------ MD5 | 85 ++++++++++++++++++++++---------------------- NAMESPACE | 20 ++++++---- R/acfHKp.R | 2 - R/inferH.R | 2 - R/inferHmetrop.R | 4 +- R/inferf.R | 2 - R/inferfmetrop.R | 4 +- R/infermsfmetrop.R | 2 - R/infermsmetrop.R | 2 - R/lssd.R | 2 - R/lsv.R | 2 - R/ltza.R | 2 - R/ltzb.R | 2 - R/ltzc.R | 2 - R/ltzd.R | 2 - R/mleHK.R | 2 - R/mlear1.R | 2 - build |only inst |only man/MannKendallLTP.Rd | 34 +++++++++++------ man/acfHKp.Rd | 39 ++++++++++++-------- man/inferH.Rd | 26 +++++++++---- man/inferHmetrop.Rd | 35 +++++++++++------- man/inferf.Rd | 28 +++++++++----- man/inferfmetrop.Rd | 39 ++++++++++++-------- man/infermsfmetrop.Rd | 30 ++++++++++----- man/infermsmetrop.Rd | 32 ++++++++++------ man/lssd.Rd | 32 ++++++++++------ man/lsv.Rd | 24 ++++++++---- man/ltza.Rd | 24 ++++++++---- man/ltzb.Rd | 20 +++++++--- man/ltzc.Rd | 18 +++++++-- man/ltzd.Rd | 18 +++++++-- man/mleHK.Rd | 30 ++++++++++----- man/mlear1.Rd | 41 +++++++++++++-------- src/VstarSfunction.c | 2 - src/likelihoodfunction.c | 2 + src/logpHx.c | 2 + src/ltza.c | 2 + src/ltzb.c | 2 + src/ltzc.c | 2 + src/registerDynamicSymbol.c |only src/score.c | 4 +- src/score0.c | 2 - 45 files changed, 424 insertions(+), 233 deletions(-)
Title: Generalized Linear Models with Clustering
Description: Binomial and Poisson regression for clustered data, fixed
and random effects with bootstrapping.
Author: Goeran Brostroem [aut, cre],
Jianming Jin [ctb],
Henrik Holmberg [ctb]
Maintainer: Goeran Brostroem <goran.brostrom@umu.se>
Diff between glmmML versions 1.1.3 dated 2022-05-10 and 1.1.4 dated 2022-10-26
ChangeLog | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/vignette.rds |binary inst/doc/glmmML.pdf |binary src/GB_zeroin.c | 2 +- src/Makevars | 1 + src/ghq.f | 2 +- 8 files changed, 18 insertions(+), 14 deletions(-)
Title: Rmetrics - Nonlinear and Chaotic Time Series Modelling
Description: Provides a collection of functions for testing various aspects of
univariate time series including independence and neglected
nonlinearities. Further provides functions to investigate the chaotic
behavior of time series processes and to simulate different types of chaotic
time series maps.
Author: Diethelm Wuertz [aut],
Tobias Setz [aut],
Yohan Chalabi [aut],
Paul Smith [cre]
Maintainer: Paul Smith <paul@waternumbers.co.uk>
Diff between fNonlinear versions 4021.80 dated 2022-07-20 and 4021.81 dated 2022-10-26
ChangeLog | 4 ++++ DESCRIPTION | 13 +++++-------- MD5 | 6 +++--- src/BDSTest.c | 57 ++++++++++++++++++++++++++++++--------------------------- 4 files changed, 42 insertions(+), 38 deletions(-)
Title: Forensic Bayesian Networks
Description: Open-source package for computing likelihood ratios in kinship testing and human identification cases (Chernomoretz et al. (2021) <doi:10.1016/j.fsir.2020.100132>). It has the core function of the software GENis, developed by Fundación Sadosky. It relies on a Bayesian Networks framework and is particularly well suited to efficiently perform large-size queries against databases of missing individuals (Darwiche (2009) <doi:10.1017/CBO9780511811357>).
Author: Ariel Chernomoretz [aut],
Franco Marsico [aut, cre]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between fbnet versions 1.0.0 dated 2022-08-23 and 1.0.1 dated 2022-10-26
fbnet-1.0.0/fbnet/LICENSE |only fbnet-1.0.1/fbnet/DESCRIPTION | 12 +-- fbnet-1.0.1/fbnet/MD5 | 96 ++++++++++++++++++---------- fbnet-1.0.1/fbnet/NAMESPACE | 57 ++++++++++++++++ fbnet-1.0.1/fbnet/R/allGenotypes.R |only fbnet-1.0.1/fbnet/R/as.matrix.linkdat.R |only fbnet-1.0.1/fbnet/R/buildBN.R | 1 fbnet-1.0.1/fbnet/R/buildCPTs.R | 1 fbnet-1.0.1/fbnet/R/convertPedformat.R | 5 - fbnet-1.0.1/fbnet/R/evidencePrunning.R | 1 fbnet-1.0.1/fbnet/R/factorHeteroFounders.R | 1 fbnet-1.0.1/fbnet/R/familias2linkdat.R |only fbnet-1.0.1/fbnet/R/fbnet.R | 1 fbnet-1.0.1/fbnet/R/getGenotypeTables.R | 1 fbnet-1.0.1/fbnet/R/getLocusCPT.R | 1 fbnet-1.0.1/fbnet/R/getMAP.R | 1 fbnet-1.0.1/fbnet/R/getQSetRMP.R | 1 fbnet-1.0.1/fbnet/R/getValuesOut.R | 1 fbnet-1.0.1/fbnet/R/imposeEvidence.R | 1 fbnet-1.0.1/fbnet/R/initBN.R | 1 fbnet-1.0.1/fbnet/R/initBN.fromPed.R | 3 fbnet-1.0.1/fbnet/R/initBN.fromVars.R | 13 +-- fbnet-1.0.1/fbnet/R/is.linkdat.R |only fbnet-1.0.1/fbnet/R/likelihood.R |only fbnet-1.0.1/fbnet/R/linkdat.R |only fbnet-1.0.1/fbnet/R/loops.R |only fbnet-1.0.1/fbnet/R/markerSimfb.R |only fbnet-1.0.1/fbnet/R/markerfb.R |only fbnet-1.0.1/fbnet/R/mendelianCheckfb.R |only fbnet-1.0.1/fbnet/R/minOrdering.R | 1 fbnet-1.0.1/fbnet/R/pedModify.R |only fbnet-1.0.1/fbnet/R/pedParts.R |only fbnet-1.0.1/fbnet/R/preparePed.R | 7 -- fbnet-1.0.1/fbnet/R/prodFactor.R | 1 fbnet-1.0.1/fbnet/R/pruneNodes.R | 9 +- fbnet-1.0.1/fbnet/R/removeEvidenceFromPed.R | 1 fbnet-1.0.1/fbnet/R/reportLR.R | 1 fbnet-1.0.1/fbnet/R/reportPQ.R | 1 fbnet-1.0.1/fbnet/R/reverseSplit.R | 1 fbnet-1.0.1/fbnet/R/setModel.R |only fbnet-1.0.1/fbnet/R/setOrdering.R | 1 fbnet-1.0.1/fbnet/R/stateRemoval.R | 1 fbnet-1.0.1/fbnet/R/stateRemoval2.R | 1 fbnet-1.0.1/fbnet/R/stateRemovalSubnucs.R | 3 fbnet-1.0.1/fbnet/R/sumFactor.R | 1 fbnet-1.0.1/fbnet/R/utils.R |only fbnet-1.0.1/fbnet/R/velim.bn.R | 1 fbnet-1.0.1/fbnet/README.md | 46 +++++++------ fbnet-1.0.1/fbnet/build/partial.rdb |binary fbnet-1.0.1/fbnet/man/Familias2linkdat.Rd |only fbnet-1.0.1/fbnet/man/allGenotypes.Rd |only fbnet-1.0.1/fbnet/man/as.matrix.linkdat.Rd |only fbnet-1.0.1/fbnet/man/is.linkdat.Rd |only fbnet-1.0.1/fbnet/man/likelihood.Rd |only fbnet-1.0.1/fbnet/man/linkdat.Rd |only fbnet-1.0.1/fbnet/man/markerSimfb.Rd |only fbnet-1.0.1/fbnet/man/markers.Rd |only fbnet-1.0.1/fbnet/man/mendelianCheckfb.Rd |only fbnet-1.0.1/fbnet/man/pedModify.Rd |only fbnet-1.0.1/fbnet/man/pedParts.Rd |only fbnet-1.0.1/fbnet/man/pedigreeLoops.Rd |only fbnet-1.0.1/fbnet/man/setAvailable.Rd |only fbnet-1.0.1/fbnet/man/setModel.Rd |only fbnet-1.0.1/fbnet/man/simpleSimfb.Rd |only 64 files changed, 165 insertions(+), 109 deletions(-)
Title: Access Cropland Data Layer Data via the 'CropScape' Web Service
Description: Interface to easily access Cropland Data Layer (CDL) data for any area of interest via the 'CropScape' <https://nassgeodata.gmu.edu/CropScape/> web service.
Author: Bowen Chen [aut, cre] ,
Benjamin Gramig [ctb],
Taro Mieno [ctb]
Maintainer: Bowen Chen <bwchen0719@gmail.com>
Diff between CropScapeR versions 1.1.3 dated 2021-08-10 and 1.1.4 dated 2022-10-26
DESCRIPTION | 6 MD5 | 14 NEWS.md | 4 R/GetCDLComp.R | 38 +- R/GetCDLData.R | 60 ++- R/GetCDLStat.R | 36 + R/utils.R | 986 +++++++++++++++++++++++++++--------------------------- man/GetCDLData.Rd | 13 8 files changed, 626 insertions(+), 531 deletions(-)
Title: Biological Structure Analysis
Description: Utilities to process, organize and explore protein structure,
sequence and dynamics data. Features include the ability to read and write
structure, sequence and dynamic trajectory data, perform sequence and structure
database searches, data summaries, atom selection, alignment, superposition,
rigid core identification, clustering, torsion analysis, distance matrix
analysis, structure and sequence conservation analysis, normal mode analysis,
principal component analysis of heterogeneous structure data, and correlation
network analysis from normal mode and molecular dynamics data. In addition,
various utility functions are provided to enable the statistical and graphical
power of the R environment to work with biological sequence and structural data.
Please refer to the URLs below for more information.
Author: Barry Grant [aut, cre],
Xin-Qiu Yao [aut],
Lars Skjaerven [aut],
Julien Ide [aut]
Maintainer: Barry Grant <bjgrant@ucsd.edu>
Diff between bio3d versions 2.4-3 dated 2022-03-10 and 2.4-4 dated 2022-10-26
bio3d-2.4-3/bio3d/NEWS |only bio3d-2.4-4/bio3d/DESCRIPTION | 6 ++-- bio3d-2.4-4/bio3d/MD5 | 28 +++++++++---------- bio3d-2.4-4/bio3d/NEWS.md |only bio3d-2.4-4/bio3d/R/aa2mass.R | 2 - bio3d-2.4-4/bio3d/R/cnapath.R | 2 - bio3d-2.4-4/bio3d/R/formula2mass.R | 2 - bio3d-2.4-4/bio3d/R/get.seq.R | 2 - bio3d-2.4-4/bio3d/R/mktrj.pca.R | 2 - bio3d-2.4-4/bio3d/R/read.dcd.R | 2 - bio3d-2.4-4/bio3d/R/summary.cnapath.R | 10 +++++- bio3d-2.4-4/bio3d/man/bio3d.package.Rd | 4 +- bio3d-2.4-4/bio3d/man/core.find.Rd | 14 ++++----- bio3d-2.4-4/bio3d/src/RcppExports.cpp | 5 +++ bio3d-2.4-4/bio3d/tests/testthat/test-pdb.annotate.R | 6 ++-- bio3d-2.4-4/bio3d/tests/testthat/test-seqaln.R | 13 ++++---- 16 files changed, 56 insertions(+), 42 deletions(-)
Title: Calculate Crosstab and Topline Tables of Weighted Survey Data
Description: Calculate common types of tables for weighted survey data.
Options include topline and (2-way and 3-way) crosstab tables of
categorical or ordinal data as well as summary tables of weighted
numeric variables. Optionally, include the margin of error at
selected confidence intervals including the design effect. The
design effect is calculated as described by
Kish (1965) <doi:10.1002/bimj.19680100122> beginning
on page 257. Output takes the form of tibbles (simple data frames).
This package conveniently handles labelled data, such as that
commonly used by 'Stata' and 'SPSS.' Complex survey design is
not supported at this time.
Author: John D. Johnson [aut, cre]
Maintainer: John D. Johnson <john.d.johnson@marquette.edu>
Diff between pollster versions 0.1.3 dated 2020-08-25 and 0.1.4 dated 2022-10-26
DESCRIPTION | 8 - MD5 | 34 ++-- NEWS.md | 7 - R/Crosstab.R | 6 R/Crosstab3way.R | 12 + R/DesignEffectAndMOE.R | 9 + R/SummaryStatistics.R | 6 R/Topline.R | 7 + R/moeCrosstab.R | 6 R/moeCrosstab3way.R | 10 + R/moeTopline.R | 6 R/moeWaveCrosstab.R | 6 R/moeWaveCrosstab3way.R | 7 + build/vignette.rds |binary inst/doc/crosstab3way.html | 233 +++++++++++++++++++++------------ inst/doc/crosstabs.html | 309 ++++++++++++++++++++++++++++----------------- inst/doc/toplines.html | 140 +++++++++++++------- man/deff_calc.Rd | 2 18 files changed, 534 insertions(+), 274 deletions(-)
Title: Analyse Biological Time-Series Data
Description: Compiles functions to trim, bin, visualise, and analyse activity/sleep time-series data collected from the Drosophila Activity Monitor (DAM) system (Trikinetics, USA). The following methods were used to compute periodograms - Chi-square periodogram: Sokolove and Bushell (1978) <doi:10.1016/0022-5193(78)90022-X>, Lomb-Scargle periodogram: Lomb (1976) <doi:10.1007/BF00648343>, Scargle (1982) <doi:10.1086/160554> and Ruf (1999) <doi:10.1076/brhm.30.2.178.1422>, and Autocorrelation: Eijzenbach et al. (1986) <doi:10.1111/j.1440-1681.1986.tb00943.x>. Identification of activity peaks is done after using a Savitzky-Golay filter (Savitzky and Golay (1964) <doi:10.1021/ac60214a047>) to smooth raw activity data. Three methods to estimate anticipation of activity are used based on the following papers - Slope method: Fernandez et al. (2020) <doi:10.1016/j.cub.2020.04.025>, Harrisingh method: Harrisingh et al. (2007) <doi:10.1523/JNEUROSCI.3680-07.2007&g [...truncated...]
Author: Lakshman Abhilash [aut, cre]
Maintainer: Lakshman Abhilash <labhilash@gc.cuny.edu>
Diff between phase versions 1.2.3 dated 2022-10-13 and 1.2.5 dated 2022-10-26
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/allPeriodogramsAct.R | 3 +++ R/peakIdentifier.R | 4 ++-- man/allPeriodogramsAct.Rd | 2 ++ 5 files changed, 14 insertions(+), 9 deletions(-)
Title: Pediatric Blood Pressure
Description: Data and utilities for estimating pediatric blood pressure
percentiles by sex, age, and optionally height (stature) as described in
Martin et.al. (2022) <doi:10.1001/jamanetworkopen.2022.36918>.
Blood pressure percentiles for children under one year of age come from Gemelli
et.al. (1990) <doi:10.1007/BF02171556>. Estimates of blood pressure
percentiles for children at least one year of age are informed by
data from the National Heart, Lung, and Blood Institute (NHLBI) and the
Centers for Disease Control and Prevention (CDC)
<doi:10.1542/peds.2009-2107C> or from Lo et.al. (2013)
<doi:10.1542/peds.2012-1292>. The flowchart for selecting the informing
data source comes from Martin et.al. (2022)
<doi:10.1542/hpeds.2021-005998>.
Author: Peter DeWitt [aut, cre] ,
Blake Martin [ctb] ,
David Albers [ctb] ,
Tell Bennett [ctb]
Maintainer: Peter DeWitt <peter.dewitt@cuanschutz.edu>
Diff between pedbp versions 1.0.0 dated 2022-07-02 and 1.0.1 dated 2022-10-26
pedbp-1.0.0/pedbp/inst/images/fig2a.svg |only pedbp-1.0.0/pedbp/inst/images/fig2b.svg |only pedbp-1.0.0/pedbp/inst/images/fig2c.svg |only pedbp-1.0.0/pedbp/inst/images/fig2d.svg |only pedbp-1.0.0/pedbp/inst/images/fig3.svg |only pedbp-1.0.0/pedbp/inst/images/flowchart.svg |only pedbp-1.0.1/pedbp/DESCRIPTION | 11 - pedbp-1.0.1/pedbp/MD5 | 27 +-- pedbp-1.0.1/pedbp/NEWS.md | 4 pedbp-1.0.1/pedbp/R/sysdata.rda |binary pedbp-1.0.1/pedbp/README.md | 55 ++++++ pedbp-1.0.1/pedbp/data/gemelli1990.rda |binary pedbp-1.0.1/pedbp/data/lo2013.rda |binary pedbp-1.0.1/pedbp/data/nhlbi_bp_norms.rda |binary pedbp-1.0.1/pedbp/inst/CITATION |only pedbp-1.0.1/pedbp/inst/doc/bp-distributions.html | 168 ++++++++++----------- pedbp-1.0.1/pedbp/inst/shinyapps/pedbp/overview.md | 5 pedbp-1.0.1/pedbp/inst/shinyapps/pedbp/ui.R | 2 18 files changed, 165 insertions(+), 107 deletions(-)
Title: Data Manipulation Functions Implemented in C
Description: Basic functions, implemented in C, for large data manipulation. Fast vectorised ifelse()/nested if()/switch() functions, psum()/pprod() functions equivalent to pmin()/pmax() plus others which are missing from base R. Most of these functions are callable at C level.
Author: Morgan Jacob [aut, cre, cph],
Sebastian Krantz [ctb]
Maintainer: Morgan Jacob <morgan.emailbox@gmail.com>
Diff between kit versions 0.0.11 dated 2022-03-27 and 0.0.12 dated 2022-10-26
DESCRIPTION | 14 + MD5 | 32 ++-- NAMESPACE | 2 R/call.R | 14 + inst/NEWS.Rd | 26 +++ man/charToFact.Rd | 2 man/fpos.Rd | 6 man/iif.Rd | 2 man/psum.Rd | 73 ++++++--- man/vswitch.Rd | 4 src/init.c | 2 src/kit.h | 5 src/psort.c | 20 -- src/psum.c | 371 ++++++++++++++++++++++++++++++----------------- src/utils.c | 2 tests/test_kit.R | 161 +++++++++++++++++++- tests/test_kit.Rout.save | 165 +++++++++++++++++++- 17 files changed, 672 insertions(+), 229 deletions(-)
Title: Bayesian Estimation and Optimisation of Expected False Discovery
Rate
Description: Implements the Bayesian FDR control described by
Newton et al. (2004), <doi:10.1093/biostatistics/5.2.155>.
Allows optimisation and visualisation of expected error rates based on
tail posterior probability tests.
Based on code written by Catalina Vallejos for BASiCS, see
Beyond comparisons of means: understanding changes in gene expression at the
single-cell level Vallejos et al. (2016) <doi:10.1186/s13059-016-0930-3>.
Author: Alan O'Callaghan [aut, cre],
Catalina Vallejos [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan@outlook.com>
Diff between bayefdr versions 0.2.0 dated 2021-09-29 and 0.2.1 dated 2022-10-26
DESCRIPTION | 11 ++++++----- MD5 | 3 ++- NEWS |only 3 files changed, 8 insertions(+), 6 deletions(-)
Title: Fractional Weighted Bootstrap
Description: An implementation of the fractional weighted bootstrap to be used as a drop-in for functions in
the 'boot' package. The fractional weighted bootstrap (also known as the Bayesian bootstrap) involves drawing
weights randomly that are applied to the data rather than resampling units from the data. See Xu et al. (2020)
<doi:10.1080/00031305.2020.1731599> for details.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between fwb versions 0.1.0 dated 2022-09-19 and 0.1.1 dated 2022-10-26
fwb-0.1.0/fwb/man/figures/README-unnamed-chunk-3-1.png |only fwb-0.1.0/fwb/man/figures/README-unnamed-chunk-7-1.png |only fwb-0.1.0/fwb/man/figures/README-unnamed-chunk-8-1.png |only fwb-0.1.1/fwb/DESCRIPTION | 8 +- fwb-0.1.1/fwb/MD5 | 26 +++---- fwb-0.1.1/fwb/NEWS.md | 9 ++ fwb-0.1.1/fwb/R/fwb.R | 32 +++++--- fwb-0.1.1/fwb/R/fwb.ci.R | 12 +-- fwb-0.1.1/fwb/R/plot.fwb.R | 12 +-- fwb-0.1.1/fwb/R/summary.fwb.R | 2 fwb-0.1.1/fwb/R/utils.R | 58 ++++++++++------ fwb-0.1.1/fwb/R/vcovFWB.R | 8 +- fwb-0.1.1/fwb/README.md | 45 +++++++----- fwb-0.1.1/fwb/build/fwb.pdf |binary fwb-0.1.1/fwb/man/figures/README-unnamed-chunk-10-1.png |only fwb-0.1.1/fwb/man/figures/README-unnamed-chunk-5-1.png |only fwb-0.1.1/fwb/man/figures/README-unnamed-chunk-9-1.png |only 17 files changed, 129 insertions(+), 83 deletions(-)
Title: Easy Study of Patient DICOM Data in Oncology
Description: Exploitation, processing and 2D-3D visualization of DICOM-RT files (structures, dosimetry, imagery) for medical physics and clinical research, in a patient-oriented perspective.
Author: Cathy Fontbonne [aut, cre] ,
Jean-Marc Fontbonne [aut] ,
Nathan Azemar [ctb]
Maintainer: Cathy Fontbonne <contact.espadon@lpccaen.in2p3.fr>
Diff between espadon versions 1.0.5 dated 2022-07-16 and 1.1.1 dated 2022-10-26
DESCRIPTION | 6 MD5 | 151 NAMESPACE | 15 NEWS.md |only R/RcppExports.R | 24 R/bin_clustering.R | 7 R/dicom_raw_data_anonymizer.R | 9 R/dicom_set_tag_value.R | 7 R/display_3D_contour.R | 5 R/display_3D_sections.R | 40 R/display_3D_stack.R | 90 R/display_kplane.R | 5 R/display_legend.R | 5 R/display_obj_links.R | 103 R/display_plane.R | 196 R/espadon_class.R | 51 R/espadon_hidden.R | 920 + R/fan_beam.R |only R/fan_planar.R |only R/fan_sphere.R |only R/fan_to_voxel.R |only R/get_ijk_from_xyz.R | 2 R/get_obj_connection.R |only R/get_plane.R | 55 R/get_roi_connection.R |only R/get_value_from_ijk.R | 7 R/grid_equal.R | 2 R/load_Rdcm_raw_data.R | 24 R/load_patient_from_Rdcm.R | 2 R/load_patient_from_dicom.R | 2 R/nesting_bin.R |only R/nesting_cube.R | 7 R/ref_add.R | 6 R/ref_cutplane_add.R | 4 R/ref_srctodest_add.R | 5 R/rt_chi_index.R |only R/rt_gamma_index.R |only R/rt_indices_from_bin.R | 6 R/rt_indices_from_roi.R | 46 R/struct_clustering.R |only R/struct_from_bin.R | 2 R/toy_load_patient.R | 62 R/toy_rtdose.R | 313 R/vol_border_tuning.R | 2 R/vol_create.R | 14 R/vol_gradient.R | 33 R/vol_in_new_ref.R | 11 R/vol_median.R |only R/vol_regrid.R | 67 R/vol_sum.R | 11 build/espadon.pdf |19898 +++++++++++++++++++++------------------ build/partial.rdb |binary inst/REFERENCES.bib | 32 inst/doc/espadon_overview.R | 1 inst/doc/espadon_overview.Rmd | 9 inst/doc/espadon_overview.html | 15 man/bin.clustering.Rd | 9 man/dicom.raw.data.anonymizer.Rd | 8 man/dicom.set.tag.value.Rd | 7 man/display.obj.links.Rd | 14 man/display.plane.Rd | 16 man/espadon.class.Rd | 47 man/fan.beam.Rd |only man/fan.planar.Rd |only man/fan.sphere.Rd |only man/fan.to.voxel.Rd |only man/get.ijk.from.xyz.Rd | 2 man/get.obj.connection.Rd |only man/get.plane.Rd | 2 man/get.roi.connection.Rd |only man/load.Rdcm.raw.data.Rd | 2 man/nesting.bin.Rd |only man/ref.cutplane.add.Rd | 2 man/rt.chi.index.Rd |only man/rt.gamma.index.Rd |only man/rt.indices.from.bin.Rd | 4 man/rt.indices.from.roi.Rd | 10 man/struct.clustering.Rd |only man/toy.load.patient.Rd | 2 man/vol.median.Rd |only src/RcppExports.cpp | 103 src/dicombrowser.cpp | 2 src/fansphereC.cpp |only src/fantovoxelC.cpp |only src/gammaindex.cpp |only src/getijktfromindexC.cpp |only src/getvaluefromijkC.cpp | 171 src/labelbrowser.cpp | 4 src/mean_voxC.cpp |only src/medianfilterC.cpp |only vignettes/espadon_overview.Rmd | 9 91 files changed, 13196 insertions(+), 9490 deletions(-)
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on
'Windows', 'Linux' and 'macOS'.
Author: Jay Loden [aut],
Dave Daeschler [aut],
Giampaolo Rodola' [aut],
Gabor Csardi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between ps versions 1.7.1 dated 2022-06-18 and 1.7.2 dated 2022-10-26
DESCRIPTION | 8 +++---- MD5 | 46 +++++++++++++++++++++--------------------- NEWS.md | 6 ++++- R/low-level.R | 2 - R/memory.R | 4 +-- R/testthat-reporter.R | 2 - inst/tools/error-codes.R | 2 - man/CleanupReporter.Rd | 2 - man/ps_memory_info.Rd | 2 - src/api-common.c | 2 - src/api-linux.c | 16 +++++++------- src/api-macos.c | 2 - src/api-posix.c | 2 - src/api-windows.c | 6 ++--- src/common.c | 2 - src/common.h | 2 - src/dummy.c | 30 +++++++++++++-------------- src/extra.c | 4 +-- src/linux.c | 2 - src/posix.c | 10 ++++----- src/ps-internal.h | 12 +++++----- src/ps.h | 22 ++++++++++---------- src/px.c | 2 - tests/testthat/test-windows.R | 7 ++++++ 24 files changed, 103 insertions(+), 92 deletions(-)
Title: Check if a Remote Computer is Up
Description: Check if a remote computer is up. It can either
just call the system ping command, or check a specified
TCP port.
Author: Gabor Csardi [aut, cre]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pingr versions 2.0.1 dated 2020-06-22 and 2.0.2 dated 2022-10-26
DESCRIPTION | 7 LICENSE | 4 MD5 | 42 ++-- NAMESPACE | 22 +- NEWS.md | 94 +++++----- R/dns.R | 86 ++++----- R/http.R | 56 +++--- R/my-ip.R | 86 ++++----- R/ping-package.r | 401 ++++++++++++++++++++++----------------------- R/utils.r | 68 +++---- README.md | 232 +++++++++++++------------- man/apple_captive_test.Rd | 42 ++-- man/is_online.Rd | 64 +++---- man/my_ip.Rd | 50 ++--- man/nsl.Rd | 98 +++++----- man/ping.Rd | 86 ++++----- man/ping_port.Rd | 130 +++++++------- man/pingr-package.Rd | 48 ++--- src/dns.c | 10 - tests/testthat.R | 12 - tests/testthat/test-icmp.r | 78 ++++---- tests/testthat/test-tcp.r | 98 +++++----- 22 files changed, 911 insertions(+), 903 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.9.6 dated 2022-09-20 and 0.9.8 dated 2022-10-26
DESCRIPTION | 8 +-- MD5 | 35 ++++++++----- NAMESPACE | 10 +++ R/decorate.R | 36 ++++++++++++- R/dvec.R | 2 R/vec_decorated.R |only R/yamlet.R | 9 +++ inst/doc/yamlet-introduction.Rmd | 8 +++ inst/doc/yamlet-introduction.html | 12 +++- man/dd_cast.Rd |only man/dd_ptype2.Rd |only man/decorate.list.Rd | 2 man/redecorate.Rd | 23 ++++++++ man/vec_cast.data.frame.decorated.Rd |only man/vec_cast.decorated.data.frame.Rd |only man/vec_cast.decorated.decorated.Rd |only man/vec_ptype2.data.frame.decorated.Rd |only man/vec_ptype2.decorated.data.frame.Rd |only man/vec_ptype2.decorated.decorated.Rd |only tests/testthat/056.rds |binary tests/testthat/test-dvec.R | 86 ++++++++++++++++++++++++++++++++- tests/testthat/test-yamlet.R | 11 +++- vignettes/yamlet-introduction.Rmd | 8 +++ 23 files changed, 222 insertions(+), 28 deletions(-)
Title: Kernel Density Estimation for Spatial Data
Description: Calculate Kernel Density Estimation (KDE) for spatial data.
The algorithm is inspired by the tool 'Heatmap' from 'QGIS'. The method is described by:
Hart, T., Zandbergen, P. (2014) <doi:10.1108/PIJPSM-04-2013-0039>,
Nelson, T. A., Boots, B. (2008) <doi:10.1111/j.0906-7590.2008.05548.x>,
Chainey, S., Tompson, L., Uhlig, S.(2008) <doi:10.1057/palgrave.sj.8350066>.
Author: Jan Caha [aut, cre]
Maintainer: Jan Caha <jan.caha@outlook.com>
Diff between SpatialKDE versions 0.7.0 dated 2022-02-09 and 0.8.0 dated 2022-10-26
SpatialKDE-0.7.0/SpatialKDE/R/RcppExports.R |only SpatialKDE-0.7.0/SpatialKDE/src/RcppExports.cpp |only SpatialKDE-0.8.0/SpatialKDE/DESCRIPTION | 15 SpatialKDE-0.8.0/SpatialKDE/MD5 | 48 - SpatialKDE-0.8.0/SpatialKDE/NAMESPACE | 3 SpatialKDE-0.8.0/SpatialKDE/NEWS.md | 6 SpatialKDE-0.8.0/SpatialKDE/R/check_message_print.R | 9 SpatialKDE-0.8.0/SpatialKDE/R/cpp11.R |only SpatialKDE-0.8.0/SpatialKDE/R/create_grid.R | 28 SpatialKDE-0.8.0/SpatialKDE/R/create_raster.R | 8 SpatialKDE-0.8.0/SpatialKDE/R/kde.R | 114 +- SpatialKDE-0.8.0/SpatialKDE/R/utils.R | 59 - SpatialKDE-0.8.0/SpatialKDE/R/zzz.R | 2 SpatialKDE-0.8.0/SpatialKDE/build/vignette.rds |binary SpatialKDE-0.8.0/SpatialKDE/inst/doc/SpatialKDE.R | 26 SpatialKDE-0.8.0/SpatialKDE/inst/doc/SpatialKDE.Rmd | 26 SpatialKDE-0.8.0/SpatialKDE/inst/doc/SpatialKDE.html | 396 +++++++--- SpatialKDE-0.8.0/SpatialKDE/man/create_grid.Rd | 8 SpatialKDE-0.8.0/SpatialKDE/man/create_raster.Rd | 2 SpatialKDE-0.8.0/SpatialKDE/man/kde.Rd | 2 SpatialKDE-0.8.0/SpatialKDE/src/cpp11.cpp |only SpatialKDE-0.8.0/SpatialKDE/src/kde.cpp | 97 +- SpatialKDE-0.8.0/SpatialKDE/tests/testthat/helper-data.R | 32 SpatialKDE-0.8.0/SpatialKDE/tests/testthat/test-create_grids_raster.R | 66 + SpatialKDE-0.8.0/SpatialKDE/tests/testthat/test-kde.R | 150 ++- SpatialKDE-0.8.0/SpatialKDE/tests/testthat/test_check_message_print.R | 1 SpatialKDE-0.8.0/SpatialKDE/vignettes/SpatialKDE.Rmd | 26 27 files changed, 717 insertions(+), 407 deletions(-)
Title: Detect Copy Number Variants from SNPs Data
Description: Functions in this package will import filtered variant call format (VCF) files of SNPs data and generate data sets to detect copy number variants, visualize them and do downstream analyses with copy number variants(e.g. Environmental association analyses).
Author: Piyal Karunarathne [aut, cre] ,
Qiujie Zhou [aut] ,
Klaus Schliep [aut] ,
Pascal Milesi [aut]
Maintainer: Piyal Karunarathne <piyalkarumail@yahoo.com>
Diff between rCNV versions 1.0.0 dated 2022-04-06 and 1.1.0 dated 2022-10-26
DESCRIPTION | 21 +- MD5 | 62 ++++---- NAMESPACE | 4 NEWS.md | 12 + R/TMM_normalz.R | 153 +++++++++++++------- R/allele_tests.R | 202 ++++++++++++++++++++++---- R/bias.det.R | 165 ++++++++++++--------- R/data.R | 2 R/detect.R | 275 +++++++++++++++++++++++++++++------- R/post_detect.R | 91 +++++++---- R/raw_process.R | 205 ++++++++++++++------------ R/sim.als.R | 199 ++++++++++++++------------ R/statistics.R | 29 +-- README.md | 33 +++- data/alleleINF.rda |binary inst/CITATION |only man/allele.freq.Rd | 24 ++- man/allele.info.Rd | 6 man/alleleINF.Rd | 4 man/cnv.Rd |only man/cpm.normal.Rd | 10 + man/depthVsSample.Rd | 16 +- man/dup.plot.Rd | 11 - man/dup.validate.Rd | 7 man/dupGet.Rd | 23 +-- man/figures/dup.plot.parrotfish.png |only man/gt.format.Rd | 15 + man/h.zygosity.Rd | 2 man/hetTgen.Rd | 4 man/norm.fact.Rd | 7 man/power.bias.Rd |only man/sig.hets.Rd | 10 - man/vcf.stat.Rd | 2 man/vst.Rd | 4 34 files changed, 1070 insertions(+), 528 deletions(-)
Title: A Framework for Clustering Longitudinal Data
Description: A framework for clustering longitudinal datasets in a standardized way.
The package provides an interface to existing R packages for clustering longitudinal univariate trajectories, facilitating reproducible and transparent analyses.
Additionally, standard tools are provided to support cluster analyses, including repeated estimation, model validation, and model assessment.
The interface enables users to compare results between methods, and to implement and evaluate new methods with ease.
Author: Niek Den Teuling [aut, cre] ,
Steffen Pauws [ctb],
Edwin van den Heuvel [ctb],
Koninklijke Philips N.V. [cph]
Maintainer: Niek Den Teuling <niek.den.teuling@philips.com>
Diff between latrend versions 1.4.2 dated 2022-08-15 and 1.4.3 dated 2022-10-26
DESCRIPTION | 12 MD5 | 28 - NEWS.md | 3 R/models.R | 4 R/test.R | 2 R/trajectories.R | 635 ++++++++++++++++++++++----------------------- R/zzz.R | 34 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/demo.html | 13 inst/doc/implement.html | 13 inst/doc/simulation.html | 62 ++-- man/latrend-package.Rd | 2 man/test.latrend.Rd | 2 tests/testthat/test-plot.R | 5 15 files changed, 436 insertions(+), 379 deletions(-)
Title: Collection of Helper Functions
Description: Provides a collection of lightweight helper functions (imps) both
for interactive use and for inclusion within other packages. These include
minimal assertion functions with a focus on informative error messaging for
both missing and incorrect function arguments as well as other functions for
visualising colour palettes, quoting user input and working with age
intervals.
Author: Tim Taylor [aut, cre, cph]
Maintainer: Tim Taylor <tim.taylor@hiddenelephants.co.uk>
Diff between ympes versions 0.1.1 dated 2022-08-09 and 0.2.0 dated 2022-10-26
ympes-0.1.1/ympes/tests/testthat |only ympes-0.1.1/ympes/tests/testthat.R |only ympes-0.2.0/ympes/DESCRIPTION | 19 ++++++++++------ ympes-0.2.0/ympes/MD5 | 37 ++++++++++++++++++++++++++------- ympes-0.2.0/ympes/NAMESPACE | 5 ++++ ympes-0.2.0/ympes/NEWS.md | 22 +++++++++++++++++++ ympes-0.2.0/ympes/R/ageutils.R |only ympes-0.2.0/ympes/R/data.R |only ympes-0.2.0/ympes/R/wip.R |only ympes-0.2.0/ympes/R/ympes-package.R |only ympes-0.2.0/ympes/README.md | 30 ++++++++++++++++++++++++-- ympes-0.2.0/ympes/build |only ympes-0.2.0/ympes/data |only ympes-0.2.0/ympes/inst |only ympes-0.2.0/ympes/man/ageutils.Rd |only ympes-0.2.0/ympes/man/figures |only ympes-0.2.0/ympes/man/pop_dat.Rd |only ympes-0.2.0/ympes/man/ympes-package.Rd |only ympes-0.2.0/ympes/src |only ympes-0.2.0/ympes/tests/tinytest.R |only ympes-0.2.0/ympes/vignettes |only 21 files changed, 97 insertions(+), 16 deletions(-)
Title: Binary Classification via GMDH-Type Neural Network Algorithms
Description: Performs binary classification via Group Method of Data Handling (GMDH) - type neural network algorithms. There exist two main algorithms available in GMDH() and dceGMDH() functions. GMDH() performs classification via GMDH algorithm for a binary response and returns important variables. dceGMDH() performs classification via diverse classifiers ensemble based on GMDH (dce-GMDH) algorithm. Also, the package produces a well-formatted table of descriptives for a binary response. Moreover, it produces confusion matrix, its related statistics and scatter plot (2D and 3D) with classification labels of binary classes to assess the prediction performance. All 'GMDH2' functions are designed for a binary response (Dag et al., 2019, <https://download.atlantis-press.com/article/125911202.pdf>).
Author: Osman Dag [aut, cre], Erdem Karabulut [aut], Reha Alpar [aut], Merve Kasikci [ctb]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between GMDH2 versions 1.7 dated 2022-09-06 and 1.8 dated 2022-10-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/confMat.R | 4 ++-- man/dceGMDH.Rd | 3 +++ 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Identification of Counterfactual Queries in Causal Models
Description: Facilitates the identification of counterfactual queries in
structural causal models via the ID* and IDC* algorithms
by Shpitser, I. and Pearl, J. (2007, 2008)
<arXiv:1206.5294>, <https://jmlr.org/papers/v9/shpitser08a.html>.
Provides a simple interface for defining causal diagrams and counterfactual
conjunctions. Construction of parallel worlds graphs and counterfactual graphs
is carried out automatically based on the counterfactual query and the causal
diagram.
Author: Santtu Tikka [aut, cre]
Maintainer: Santtu Tikka <santtuth@gmail.com>
Diff between cfid versions 0.1.2 dated 2021-06-10 and 0.1.4 dated 2022-10-26
cfid-0.1.2/cfid/man/CounterfactualConjunction.Rd |only cfid-0.1.2/cfid/man/CounterfactualVariable.Rd |only cfid-0.1.2/cfid/man/Probability.Rd |only cfid-0.1.2/cfid/tests/testthat/test-misc.R |only cfid-0.1.4/cfid/DESCRIPTION | 21 cfid-0.1.4/cfid/MD5 | 55 cfid-0.1.4/cfid/NAMESPACE | 47 cfid-0.1.4/cfid/NEWS.md |only cfid-0.1.4/cfid/R/algorithms.R | 588 +++++--- cfid-0.1.4/cfid/R/causal_effect.R |only cfid-0.1.4/cfid/R/cf_conjunction.R | 313 +++- cfid-0.1.4/cfid/R/cf_variable.R | 215 +-- cfid-0.1.4/cfid/R/cfid-package.R | 73 - cfid-0.1.4/cfid/R/extractors.R | 189 +- cfid-0.1.4/cfid/R/functional.R |only cfid-0.1.4/cfid/R/graph_ops.R | 462 +++--- cfid-0.1.4/cfid/R/graphs.R | 1289 +++++++++++------- cfid-0.1.4/cfid/R/identifiable.R | 280 +++ cfid-0.1.4/cfid/R/probability.R | 235 +-- cfid-0.1.4/cfid/R/utilities.R | 138 + cfid-0.1.4/cfid/man/causal_effect.Rd |only cfid-0.1.4/cfid/man/cfid-package.Rd | 220 +-- cfid-0.1.4/cfid/man/counterfactuals.Rd |only cfid-0.1.4/cfid/man/dag.Rd | 160 +- cfid-0.1.4/cfid/man/export_graph.Rd | 77 - cfid-0.1.4/cfid/man/functional.Rd |only cfid-0.1.4/cfid/man/identifiable.Rd | 202 +- cfid-0.1.4/cfid/man/import_graph.Rd | 41 cfid-0.1.4/cfid/man/probability.Rd |only cfid-0.1.4/cfid/man/query.Rd |only cfid-0.1.4/cfid/tests/testthat/test-algorithms.R | 275 +++ cfid-0.1.4/cfid/tests/testthat/test-counterfactuals.R | 148 +- cfid-0.1.4/cfid/tests/testthat/test-graphs.R | 244 ++- cfid-0.1.4/cfid/tests/testthat/test-interface.R |only cfid-0.1.4/cfid/tests/testthat/test-probability.R | 73 - 35 files changed, 3328 insertions(+), 2017 deletions(-)
Title: Bayesian Global Vector Autoregressions
Description: Estimation of Bayesian Global Vector Autoregressions (BGVAR) with different prior setups and the possibility to introduce stochastic volatility. Built-in priors include the Minnesota, the stochastic search variable selection and Normal-Gamma (NG) prior. For a reference see also Crespo Cuaresma, J., Feldkircher, M. and F. Huber (2016) "Forecasting with Global Vector Autoregressive Models: a Bayesian Approach", Journal of Applied Econometrics, Vol. 31(7), pp. 1371-1391 <doi:10.1002/jae.2504>. Post-processing functions allow for doing predictions, structurally identify the model with short-run or sign-restrictions and compute impulse response functions, historical decompositions and forecast error variance decompositions. Plotting functions are also available. The package has a companion paper: Boeck, M., Feldkircher, M. and F. Huber (2022) "BGVAR: Bayesian Global Vector Autoregressions with Shrinkage Priors in R", Journal of Statistical Software, Vol. 104(9), pp. 1-28 <doi:10.18 [...truncated...]
Author: Maximilian Boeck [aut, cre] ,
Martin Feldkircher [aut] ,
Florian Huber [aut] ,
Darjus Hosszejni [ctb]
Maintainer: Maximilian Boeck <maximilian.boeck@da-vienna.ac.at>
Diff between BGVAR versions 2.5.1 dated 2022-09-02 and 2.5.2 dated 2022-10-26
DESCRIPTION | 10 ++++----- MD5 | 14 ++++++------- NEWS | 3 ++ R/BGVAR.R | 2 + build/vignette.rds |binary inst/CITATION | 50 ++++++++++++++++++++++++++----------------------- inst/doc/examples.html | 16 ++++++++++----- man/bgvar.Rd | 2 + 8 files changed, 57 insertions(+), 40 deletions(-)
Title: Cache 'CRAN'-Like Metadata and R Packages
Description: Metadata and package cache for CRAN-like repositories. This
is a utility package to be used by package management tools that want
to take advantage of caching.
Author: Gabor Csardi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgcache versions 2.0.2 dated 2022-09-08 and 2.0.3 dated 2022-10-26
pkgcache-2.0.2/pkgcache/tests/testthat/helper-fixtures.R |only pkgcache-2.0.2/pkgcache/tests/testthat/setup-httpbin.R |only pkgcache-2.0.2/pkgcache/tests/testthat/teardown-httpbin.R |only pkgcache-2.0.3/pkgcache/DESCRIPTION | 14 pkgcache-2.0.3/pkgcache/MD5 | 166 +++++----- pkgcache-2.0.3/pkgcache/NEWS.md | 17 + pkgcache-2.0.3/pkgcache/R/aa-assertthat.R | 2 pkgcache-2.0.3/pkgcache/R/archive.R | 43 +- pkgcache-2.0.3/pkgcache/R/bioc.R | 11 pkgcache-2.0.3/pkgcache/R/cache-dirs.R | 5 pkgcache-2.0.3/pkgcache/R/cran-app.R |only pkgcache-2.0.3/pkgcache/R/installed.R | 3 pkgcache-2.0.3/pkgcache/R/metadata-cache.R | 16 pkgcache-2.0.3/pkgcache/R/packages-gz.R | 8 pkgcache-2.0.3/pkgcache/R/rematch.R | 2 pkgcache-2.0.3/pkgcache/R/utils.R | 4 pkgcache-2.0.3/pkgcache/inst/fixtures |only pkgcache-2.0.3/pkgcache/src/init.c | 8 pkgcache-2.0.3/pkgcache/src/winfiles.c | 4 pkgcache-2.0.3/pkgcache/tests/async/test-amap.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-async.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-backoff.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-call-function.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-cancel-early.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-cancel-sync.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-cancel.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-constant.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-debug.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-deferred-http.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-deferred-pieces.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-deferred-then.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-deferred-timeout.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-deferred.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-detect.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-each-of.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-each.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-errors.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-event-emitter-async.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-event-emitter.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-event-loop.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-every.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-filter.R | 4 pkgcache-2.0.3/pkgcache/tests/async/test-http-file.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-http.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-parallel.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-process.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-progress.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-reflect.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-replicate.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-retry.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-retryable.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-sequence.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-shared.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-some.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-synchronise.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-timeout.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-timer.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-try-each.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-until.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-when-all.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-when-any.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-when-some.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-whilst.R | 2 pkgcache-2.0.3/pkgcache/tests/async/test-worker-pool.R | 2 pkgcache-2.0.3/pkgcache/tests/testthat/_snaps/1-metadata-cache-3.md |only pkgcache-2.0.3/pkgcache/tests/testthat/_snaps/archive.md |only pkgcache-2.0.3/pkgcache/tests/testthat/_snaps/assert-that.md |only pkgcache-2.0.3/pkgcache/tests/testthat/_snaps/installed.md | 23 + pkgcache-2.0.3/pkgcache/tests/testthat/_snaps/repo-status.md |only pkgcache-2.0.3/pkgcache/tests/testthat/fixtures/description/pkgcachel1/DESCRIPTION | 2 pkgcache-2.0.3/pkgcache/tests/testthat/fixtures/packages/PACKAGES.rds |binary pkgcache-2.0.3/pkgcache/tests/testthat/fixtures/packages/PACKAGES2.rds |only pkgcache-2.0.3/pkgcache/tests/testthat/helper-apps.R |only pkgcache-2.0.3/pkgcache/tests/testthat/helper.R | 33 - pkgcache-2.0.3/pkgcache/tests/testthat/test-1-metadata-cache-1.R | 55 +-- pkgcache-2.0.3/pkgcache/tests/testthat/test-1-metadata-cache-2.R | 34 -- pkgcache-2.0.3/pkgcache/tests/testthat/test-1-metadata-cache-3.R | 55 ++- pkgcache-2.0.3/pkgcache/tests/testthat/test-2-metadata-api.R | 19 - pkgcache-2.0.3/pkgcache/tests/testthat/test-3-cran-metadata.R | 41 +- pkgcache-2.0.3/pkgcache/tests/testthat/test-4-async-http.R | 12 pkgcache-2.0.3/pkgcache/tests/testthat/test-5-cache.R | 32 - pkgcache-2.0.3/pkgcache/tests/testthat/test-archive.R |only pkgcache-2.0.3/pkgcache/tests/testthat/test-assert-that.R |only pkgcache-2.0.3/pkgcache/tests/testthat/test-assertions.R | 7 pkgcache-2.0.3/pkgcache/tests/testthat/test-installed.R | 56 +-- pkgcache-2.0.3/pkgcache/tests/testthat/test-metadata-errors.R | 19 - pkgcache-2.0.3/pkgcache/tests/testthat/test-metadata-utils.R | 6 pkgcache-2.0.3/pkgcache/tests/testthat/test-packages-gz.R | 18 - pkgcache-2.0.3/pkgcache/tests/testthat/test-platform.R | 4 pkgcache-2.0.3/pkgcache/tests/testthat/test-repo-status.R |only pkgcache-2.0.3/pkgcache/tests/testthat/test-utils.R | 2 91 files changed, 416 insertions(+), 397 deletions(-)
Title: Wait for a Key Press in a Terminal
Description: Wait for a single key press at the 'R' prompt.
This works in terminals, but does not currently work
in the 'Windows' 'GUI', the 'OS X' 'GUI' ('R.app'),
in 'Emacs' 'ESS', in an 'Emacs' shell buffer or in
'R Studio'. In these cases 'keypress' stops with an
error message.
Author: Gabor Csardi [aut, cre], Jon Griffiths [aut]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between keypress versions 1.2.0 dated 2020-01-10 and 1.3.0 dated 2022-10-26
keypress-1.2.0/keypress/inst/doc |only keypress-1.3.0/keypress/DESCRIPTION | 9 +- keypress-1.3.0/keypress/MD5 | 28 +++---- keypress-1.3.0/keypress/NAMESPACE | 1 keypress-1.3.0/keypress/NEWS.md | 7 + keypress-1.3.0/keypress/R/keypress.R | 30 +++++++- keypress-1.3.0/keypress/README.md | 4 - keypress-1.3.0/keypress/inst/include/keypress.h | 3 keypress-1.3.0/keypress/man/has_keypress_support.Rd | 4 - keypress-1.3.0/keypress/man/keypress.Rd | 4 - keypress-1.3.0/keypress/man/without_echo.Rd |only keypress-1.3.0/keypress/src/init.c | 4 + keypress-1.3.0/keypress/src/keypress-internal.h |only keypress-1.3.0/keypress/src/keypress-unix.c | 73 +++++++++++++++----- keypress-1.3.0/keypress/src/keypress-win.c | 31 +++++++- keypress-1.3.0/keypress/src/keypress.c | 8 +- 16 files changed, 149 insertions(+), 57 deletions(-)
Title: Regression Toward the Mean
Description: In repeated measures studies with extreme large or small values it is common
that the subjects measurements on average are closer to the mean of the basic population.
Interpreting possible changes in the mean in such situations can lead to biased results
since the values were not randomly selected, they come from truncated sampling.
This method allows to estimate the range of means where treatment effects are likely to occur
when regression toward the mean is present.
Ostermann, T., Willich, Stefan N. & Luedtke, Rainer. (2008). Regression toward the mean - a detection method for unknown population mean based on Mee and Chua's algorithm. BMC Medical Research Methodology.<doi:10.1186/1471-2288-8-52>.
Author: Daniela Recchia [aut, cre],
Thomas Ostermann [ctb]
Maintainer: Daniela Recchia <daniela.rodriguesrecchia@uni-wh.de>
Diff between regtomean versions 1.0 dated 2021-01-29 and 1.1 dated 2022-10-26
regtomean-1.0/regtomean/man/meechua_print.Rd |only regtomean-1.1/regtomean/DESCRIPTION | 6 +++--- regtomean-1.1/regtomean/LICENSE | 2 +- regtomean-1.1/regtomean/MD5 | 22 +++++++++++----------- regtomean-1.1/regtomean/R/cordata.R | 4 +--- regtomean-1.1/regtomean/R/meechua_eff.CI.R | 2 +- regtomean-1.1/regtomean/R/meechua_reg.R | 4 ++-- regtomean-1.1/regtomean/R/replicate_data.R | 9 +++++---- regtomean-1.1/regtomean/man/cordata.Rd | 6 +++--- regtomean-1.1/regtomean/man/meechua_eff.CI.Rd | 7 +++++-- regtomean-1.1/regtomean/man/meechua_plot.Rd |only regtomean-1.1/regtomean/man/meechua_reg.Rd | 8 +++++--- regtomean-1.1/regtomean/man/replicate_data.Rd | 9 ++++----- 13 files changed, 41 insertions(+), 38 deletions(-)
Title: C Resource Cleanup via Exit Handlers
Description: Wrapper of .Call() that runs exit handlers to clean up C
resources. Helps managing C (non-R) resources while using the R API.
Author: Lionel Henry [aut],
Gabor Csardi [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cleancall versions 0.1.2 dated 2022-03-10 and 0.1.3 dated 2022-10-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 ++++++--- src/cleancall.c | 2 +- src/cleancall.h | 2 +- src/init.c | 2 +- src/test.c | 2 +- 7 files changed, 19 insertions(+), 16 deletions(-)
Title: Create 'Ascii' Screen Casts from R Scripts
Description: Record 'asciicast' screen casts from R scripts. Convert them
to animated SVG images, to be used in 'README' files, or blog posts.
Includes 'asciinema-player' as an 'HTML' widget, and an 'asciicast'
'knitr' engine, to embed 'ascii' screen casts in 'Rmarkdown' documents.
Author: Gabor Csardi [aut, cre],
Romain Francois [aut],
Mario Nebl [aut] ,
Marcin Kulik [aut]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between asciicast versions 2.1.0 dated 2022-08-07 and 2.2.0 dated 2022-10-26
asciicast-2.1.0/asciicast/man/asciicast_knitr_options.Rd |only asciicast-2.2.0/asciicast/DESCRIPTION | 14 asciicast-2.2.0/asciicast/MD5 | 72 ++-- asciicast-2.2.0/asciicast/NAMESPACE | 1 asciicast-2.2.0/asciicast/NEWS.md | 25 + asciicast-2.2.0/asciicast/R/asciicast.R | 3 asciicast-2.2.0/asciicast/R/embed.R | 8 asciicast-2.2.0/asciicast/R/html.R | 148 ++++------ asciicast-2.2.0/asciicast/R/knitr.R | 139 ++++----- asciicast-2.2.0/asciicast/R/svg.R | 18 - asciicast-2.2.0/asciicast/inst/examples/github-readme.Rmd | 29 - asciicast-2.2.0/asciicast/inst/examples/github-readme.md | 24 - asciicast-2.2.0/asciicast/inst/examples/man/figures/README-/unnamed-chunk-4.svg | 2 asciicast-2.2.0/asciicast/inst/examples/man/figures/README-/unnamed-chunk-5.svg | 2 asciicast-2.2.0/asciicast/man/figures/README-/unnamed-chunk-3.svg | 2 asciicast-2.2.0/asciicast/man/figures/README-/unnamed-chunk-5.svg | 2 asciicast-2.2.0/asciicast/man/figures/README-/unnamed-chunk-7.svg | 2 asciicast-2.2.0/asciicast/man/init_knitr_engine.Rd | 11 asciicast-2.2.0/asciicast/man/write_html.Rd | 13 asciicast-2.2.0/asciicast/src/asciicast.h | 2 asciicast-2.2.0/asciicast/src/common.c | 2 asciicast-2.2.0/asciicast/src/r.c | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/html |only asciicast-2.2.0/asciicast/tests/testthat/_snaps/html.md |only asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/1-cpp11-mean.svg | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/1-letters.svg | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/3-echo.svg | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/3-header.svg | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/5-process.svg | 2 asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/test-5.md |only asciicast-2.2.0/asciicast/tests/testthat/_snaps/knitr/test-6.md |only asciicast-2.2.0/asciicast/tests/testthat/fixtures/test-1.Rmd | 9 asciicast-2.2.0/asciicast/tests/testthat/fixtures/test-2.Rmd | 7 asciicast-2.2.0/asciicast/tests/testthat/fixtures/test-4.Rmd | 6 asciicast-2.2.0/asciicast/tests/testthat/fixtures/test-5.Rmd |only asciicast-2.2.0/asciicast/tests/testthat/fixtures/test-6.Rmd |only asciicast-2.2.0/asciicast/tests/testthat/test-html.R |only asciicast-2.2.0/asciicast/tests/testthat/test-knitr.R | 46 +++ 38 files changed, 320 insertions(+), 279 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut, cre],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Javier Luraschi [ctb],
Karl Dunkle Werner [ctb] ,
Jeffrey Wong [ctb [...truncated...]
Maintainer: Neal Richardson <neal@ursalabs.org>
Diff between arrow versions 9.0.0.2 dated 2022-10-01 and 10.0.0 dated 2022-10-26
arrow-10.0.0/arrow/DESCRIPTION | 38 arrow-10.0.0/arrow/MD5 | 1239 ++--- arrow-10.0.0/arrow/NAMESPACE | 33 arrow-10.0.0/arrow/NEWS.md | 70 arrow-10.0.0/arrow/R/array.R | 29 arrow-10.0.0/arrow/R/arrow-datum.R | 6 arrow-10.0.0/arrow/R/arrow-info.R | 6 arrow-10.0.0/arrow/R/arrow-package.R | 130 arrow-10.0.0/arrow/R/arrowExports.R | 56 arrow-10.0.0/arrow/R/compute.R | 17 arrow-10.0.0/arrow/R/csv.R | 46 arrow-10.0.0/arrow/R/dataset-format.R | 7 arrow-10.0.0/arrow/R/dataset-scan.R | 40 arrow-10.0.0/arrow/R/dataset-write.R | 8 arrow-10.0.0/arrow/R/dataset.R | 9 arrow-10.0.0/arrow/R/dplyr-across.R |only arrow-10.0.0/arrow/R/dplyr-arrange.R | 5 arrow-10.0.0/arrow/R/dplyr-collect.R | 113 arrow-10.0.0/arrow/R/dplyr-datetime-helpers.R | 8 arrow-10.0.0/arrow/R/dplyr-eval.R | 3 arrow-10.0.0/arrow/R/dplyr-filter.R | 2 arrow-10.0.0/arrow/R/dplyr-funcs-augmented.R |only arrow-10.0.0/arrow/R/dplyr-funcs-datetime.R | 577 +- arrow-10.0.0/arrow/R/dplyr-funcs-doc.R |only arrow-10.0.0/arrow/R/dplyr-funcs-string.R | 289 - arrow-10.0.0/arrow/R/dplyr-funcs-type.R | 114 arrow-10.0.0/arrow/R/dplyr-funcs.R | 29 arrow-10.0.0/arrow/R/dplyr-group-by.R | 48 arrow-10.0.0/arrow/R/dplyr-join.R | 89 arrow-10.0.0/arrow/R/dplyr-mutate.R | 14 arrow-10.0.0/arrow/R/dplyr-select.R | 79 arrow-10.0.0/arrow/R/dplyr-slice.R |only arrow-10.0.0/arrow/R/dplyr-summarize.R | 83 arrow-10.0.0/arrow/R/dplyr.R | 53 arrow-10.0.0/arrow/R/duckdb.R | 4 arrow-10.0.0/arrow/R/expression.R | 22 arrow-10.0.0/arrow/R/extension.R | 2 arrow-10.0.0/arrow/R/feather.R | 12 arrow-10.0.0/arrow/R/filesystem.R | 9 arrow-10.0.0/arrow/R/flight.R | 11 arrow-10.0.0/arrow/R/json.R | 19 arrow-10.0.0/arrow/R/parquet.R | 5 arrow-10.0.0/arrow/R/query-engine.R | 115 arrow-10.0.0/arrow/R/record-batch-reader.R | 6 arrow-10.0.0/arrow/R/schema.R | 11 arrow-10.0.0/arrow/R/table.R | 21 arrow-10.0.0/arrow/R/type.R | 16 arrow-10.0.0/arrow/R/util.R | 42 arrow-10.0.0/arrow/README.md | 21 arrow-10.0.0/arrow/configure | 29 arrow-10.0.0/arrow/configure.win | 11 arrow-10.0.0/arrow/inst/build_arrow_static.sh | 11 arrow-10.0.0/arrow/inst/doc/dataset.R | 17 arrow-10.0.0/arrow/inst/doc/dataset.Rmd | 45 arrow-10.0.0/arrow/inst/doc/dataset.html | 172 arrow-10.0.0/arrow/inst/doc/developing.Rmd | 1 arrow-10.0.0/arrow/inst/doc/developing.html | 2 arrow-10.0.0/arrow/inst/doc/flight.Rmd | 2 arrow-10.0.0/arrow/inst/doc/flight.html | 4 arrow-10.0.0/arrow/inst/doc/fs.Rmd | 18 arrow-10.0.0/arrow/inst/doc/fs.html | 18 arrow-10.0.0/arrow/inst/doc/install.Rmd | 93 arrow-10.0.0/arrow/inst/doc/install.html | 172 arrow-10.0.0/arrow/man/Scanner.Rd | 27 arrow-10.0.0/arrow/man/acero.Rd |only arrow-10.0.0/arrow/man/add_filename.Rd |only arrow-10.0.0/arrow/man/as_arrow_table.Rd | 3 arrow-10.0.0/arrow/man/cast.Rd |only arrow-10.0.0/arrow/man/flight_put.Rd | 5 arrow-10.0.0/arrow/man/infer_type.Rd | 2 arrow-10.0.0/arrow/man/new_extension_type.Rd | 2 arrow-10.0.0/arrow/man/open_dataset.Rd | 5 arrow-10.0.0/arrow/man/read_delim_arrow.Rd | 39 arrow-10.0.0/arrow/man/read_feather.Rd | 2 arrow-10.0.0/arrow/man/read_json_arrow.Rd | 20 arrow-10.0.0/arrow/man/read_parquet.Rd | 2 arrow-10.0.0/arrow/man/register_binding.Rd | 11 arrow-10.0.0/arrow/man/show_exec_plan.Rd | 2 arrow-10.0.0/arrow/man/to_duckdb.Rd | 4 arrow-10.0.0/arrow/man/write_dataset.Rd | 5 arrow-10.0.0/arrow/man/write_feather.Rd | 4 arrow-10.0.0/arrow/src/Makevars.in | 2 arrow-10.0.0/arrow/src/Makevars.ucrt | 3 arrow-10.0.0/arrow/src/altrep.cpp | 2 arrow-10.0.0/arrow/src/array_to_vector.cpp | 6 arrow-10.0.0/arrow/src/arrowExports.cpp | 130 arrow-10.0.0/arrow/src/arrow_types.h | 8 arrow-10.0.0/arrow/src/compute-exec.cpp | 282 - arrow-10.0.0/arrow/src/compute.cpp | 10 arrow-10.0.0/arrow/src/config.cpp | 5 arrow-10.0.0/arrow/src/csv.cpp | 8 arrow-10.0.0/arrow/src/extension-impl.cpp | 2 arrow-10.0.0/arrow/src/filesystem.cpp | 7 arrow-10.0.0/arrow/src/r_to_arrow.cpp | 4 arrow-10.0.0/arrow/src/recordbatchreader.cpp | 85 arrow-10.0.0/arrow/src/safe-call-into-r-impl.cpp 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| 208 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/sql/test_app_cli.cc | 16 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/sql/types.h | 90 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/test_definitions.cc | 8 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/test_util.cc | 24 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/test_util.h | 3 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport.cc | 10 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport.h | 8 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/grpc/grpc_client.cc | 52 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/grpc/grpc_server.cc | 4 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/grpc/util_internal.cc | 20 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/ucx/CMakeLists.txt | 2 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/ucx/ucx_client.cc | 14 arrow-10.0.0/arrow/tools/cpp/src/arrow/flight/transport/ucx/ucx_internal.cc | 23 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Title: Simulation of Complex Synthetic Data Information
Description: Tools and methods to simulate populations for surveys based
on auxiliary data. The tools include model-based methods, calibration and
combinatorial optimization algorithms, see Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v079.i10>) and
Templ (2017) <doi:10.1007/978-3-319-50272-4>. The package was developed with support of
the International Household Survey Network, DFID Trust Fund TF011722 and funds
from the World bank.
Author: Matthias Templ [aut, cre],
Alexander Kowarik [aut] ,
Bernhard Meindl [aut],
Andreas Alfons [aut],
Mathieu Ribatet [ctb],
Johannes Gussenbauer [ctb],
Siro Fritzmann [ctb]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between simPop versions 2.1.0 dated 2022-10-10 and 2.1.1 dated 2022-10-26
DESCRIPTION | 8 MD5 | 112 ++++++------- NEWS | 5 R/0classes.R | 2 R/addKnownMargins.R | 2 R/addWeights.r | 2 R/calibPop.R | 6 R/calibSample.R | 2 R/calibVars.R | 2 R/crossValidation.R | 2 R/ipu.r | 2 R/sampHH.R | 2 R/simCategorical.R | 2 R/simComponents.R | 2 R/simContinuous.R | 2 R/simEUSILC.R | 2 R/simInitSpatial.R | 2 R/simRelation.R | 2 R/simStructure.R | 2 R/spCdfplot.R | 2 R/spMosaic.R | 2 R/spTable.R | 2 R/utility.R | 246 +++++++++++++++--------------- build/partial.rdb |binary inst/tinytest/debug_ipu.r | 3 inst/tinytest/dontruns.R | 241 +++++++++++++++-------------- inst/tinytest/reproducTest.R | 85 +++++----- inst/tinytest/simInitSpatialTest.R | 283 +++++++++++++++++------------------ inst/tinytest/test_cforest.R | 71 ++++---- inst/tinytest/test_correctHeaps.R | 5 inst/tinytest/test_crossValidation.R | 55 +++--- inst/tinytest/test_simCategorical.R | 3 inst/tinytest/test_simRelation.R | 5 inst/tinytest/test_sprague.R | 5 inst/tinytest/test_xgboost.R | 137 ++++++++-------- man/addKnownMargins.Rd | 2 man/addWeights.Rd | 2 man/calibPop.Rd | 6 man/calibSample.Rd | 2 man/calibVars.Rd | 2 man/crossValidation.Rd | 2 man/get_set-methods.Rd | 2 man/ipu.Rd | 2 man/sampHH.Rd | 2 man/simCategorical.Rd | 2 man/simComponents.Rd | 2 man/simContinuous.Rd | 2 man/simEUSILC.Rd | 2 man/simInitSpatial.Rd | 2 man/simRelation.Rd | 2 man/simStructure.Rd | 2 man/spBwplot.Rd | 1 man/spCdfplot.Rd | 2 man/spMosaic.Rd | 2 man/spTable.Rd | 2 man/utility.Rd | 12 - src/updateVec.cpp | 6 57 files changed, 714 insertions(+), 653 deletions(-)
Title: Statistical Disclosure Control Methods for Anonymization of Data
and Risk Estimation
Description: Data from statistical agencies and other institutions are mostly
confidential. This package (see also Templ, Kowarik and Meindl (2017) <doi:10.18637/jss.v067.i04>) can be used for the generation of anonymized
(micro)data, i.e. for the creation of public- and scientific-use files.
The theoretical basis for the methods implemented can be found in Templ (2017) <doi:10.1007/978-3-319-50272-4>.
Various risk estimation and anonymisation methods are included. Note that the package
includes a graphical user interface (Meindl and Templ, 2019 <doi:10.3390/a12090191>) that allows to use various methods of this
package.
Author: Matthias Templ [aut, cre] ,
Bernhard Meindl [aut],
Alexander Kowarik [aut] ,
Johannes Gussenbauer [aut],
Organisation For Economic Co-Operation And Development [cph] code code for rank swapping,
mdav-microaggregation, suda2 and other risk
measures [...truncated...]
Maintainer: Matthias Templ <matthias.templ@gmail.com>
Diff between sdcMicro versions 5.7.3 dated 2022-10-05 and 5.7.4 dated 2022-10-26
DESCRIPTION | 8 +- MD5 | 20 +++--- NEWS | 3 R/sdcMicro-package.R | 3 R/suda2.R | 17 ----- build/partial.rdb |binary inst/doc/recordSwapping.html | 131 +++++++++++++++++++++---------------------- inst/doc/sdcMicro.html | 4 - man/print.suda2.Rd | 5 - man/sdcMicro-package.Rd | 3 man/suda2.Rd | 14 ---- 11 files changed, 85 insertions(+), 123 deletions(-)
Title: Spatio-Temporal Bayesian Modelling
Description: Fits, spatially predicts and temporally forecasts large amounts of space-time data using [1] Bayesian Gaussian Process (GP) Models, [2] Bayesian Auto-Regressive (AR) Models, and [3] Bayesian Gaussian Predictive Processes (GPP) based AR Models for spatio-temporal big-n problems. Bakar and Sahu (2015) <doi:10.18637/jss.v063.i15>.
Author: K. Shuvo Bakar & Sujit K. Sahu
Maintainer: K. Shuvo Bakar <shuvo.bakar@gmail.com>
Diff between spTimer versions 3.3.1 dated 2020-06-02 and 3.3.2 dated 2022-10-26
DESCRIPTION | 10 +++---- MD5 | 18 +++++++------- R/spAR.r | 6 ++-- R/spGP.r | 6 ++-- R/spGPP.r | 10 +++---- R/spTfnc.R | 66 ++++++++++++++++++++++++++++------------------------ R/useful_commands.R | 4 +-- inst/CITATION | 4 +-- inst/ChangeLog | 5 +++ src/mathematics.h | 4 +-- 10 files changed, 72 insertions(+), 61 deletions(-)
Title: Execute and Control System Processes
Description: Tools to run system processes in the background. It can
check if a background process is running; wait on a background process
to finish; get the exit status of finished processes; kill background
processes. It can read the standard output and error of the processes,
using non-blocking connections. 'processx' can poll a process for
standard output or error, with a timeout. It can also poll several
processes at once.
Author: Gabor Csardi [aut, cre, cph] ,
Winston Chang [aut],
RStudio [cph, fnd],
Mango Solutions [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between processx versions 3.7.0 dated 2022-07-07 and 3.8.0 dated 2022-10-26
DESCRIPTION | 6 +- MD5 | 40 ++++++++-------- NEWS.md | 9 +++ R/errors.R | 85 +++++++++++++++++++++++++---------- inst/include/processx/unix-sockets.c | 2 inst/include/processx/unix-sockets.h | 2 src/cleancall.c | 2 src/cleancall.h | 2 src/client.c | 12 +++- src/create-time.c | 2 src/init.c | 12 ++-- src/processx-connection.c | 12 +++- src/processx-connection.h | 4 - src/processx.h | 4 - src/supervisor/supervisor.c | 2 src/tools/px.c | 2 src/unix/childlist.c | 4 - src/unix/processx-unix.h | 10 ++-- src/unix/processx.c | 2 src/unix/sigchld.c | 8 +-- src/unix/utils.c | 6 +- 21 files changed, 145 insertions(+), 83 deletions(-)
Title: Tools for Processing and Analysing Files from the Hydrological
Catchment Model HYPE
Description: Work with model files (setup, input, output) from
the hydrological catchment model HYPE: Streamlined file import and export, standard
evaluation plot routines, diverse post-processing and aggregation routines
for hydrological model analysis.
Author: Rene Capell [aut, cre],
Conrad Brendel [aut],
Jafet Andersson [ctb],
David Gustafsson [ctb],
Jude Musuuza [ctb],
Jude Lubega [ctb]
Maintainer: Rene Capell <rene.capell@smhi.se>
Diff between HYPEtools versions 1.0.0 dated 2022-09-05 and 1.1.0 dated 2022-10-26
DESCRIPTION | 17 +- MD5 | 45 ++++--- NAMESPACE | 46 +++++++ NEWS.md | 13 ++ R/function_AnnualRegime.R | 2 R/function_PlotBasinSummary.R | 12 - R/function_PlotMapPoints.R | 193 +++++++++++++++++++++++-------- R/function_PlotPerformanceByAttribute.R |only R/function_SubidAttributeSummary.R |only R/function_SumUpstreamArea.R | 1 R/function_UpstreamGroupSLCClasses.R | 19 ++- R/functioncollection_Harmonized.R |only README.md | 9 + inst/doc/analyze_hype_ts.html | 14 +- inst/doc/basin_characteristics.html | 14 +- inst/doc/basin_network.html | 16 +- inst/doc/hypetools_introduction.html | 14 +- inst/doc/import_files.html | 14 +- inst/doc/modify_par.html | 14 +- inst/doc/plot_map_statistics.html | 18 ++ man/PlotAnnualRegime.Rd | 4 man/PlotMapPoints.Rd | 5 man/PlotPerformanceByAttribute.Rd |only man/SubidAttributeSummary.Rd |only man/UpstreamGroupSLCClasses.Rd | 2 man/WriteHarmonizedData.Rd |only man/WriteHarmonizedSpatialDescription.Rd |only 27 files changed, 362 insertions(+), 110 deletions(-)
Title: Tools for Highfrequency Data Analysis
Description: Provide functionality to manage, clean and match highfrequency
trades and quotes data, calculate various liquidity measures, estimate and
forecast volatility, detect price jumps and investigate microstructure noise and intraday
periodicity. A detailed vignette can be found in the paper
"Analyzing Intraday Financial Data in R: The highfrequency Package"
by Boudt, Kleen, and Sjoerup (2022, <doi:10.18637/jss.v104.i08>).
The DOI in the CITATION is for a new Journal of Statistical Software publication that will be registered after publication on CRAN.
A working paper version can be found on SSRN: <doi:10.2139/ssrn.3917548>.
Author: Kris Boudt [aut, cre] ,
Jonathan Cornelissen [aut],
Scott Payseur [aut],
Giang Nguyen [ctb],
Onno Kleen [aut] ,
Emil Sjoerup [aut]
Maintainer: Kris Boudt <kris.boudt@ugent.be>
Diff between highfrequency versions 0.9.5 dated 2022-08-17 and 1.0.0 dated 2022-10-26
DESCRIPTION | 14 ++++++++------ MD5 | 5 +++-- NEWS.md | 4 ++++ inst |only 4 files changed, 15 insertions(+), 8 deletions(-)
Title: Biological Geometries
Description: Is used to simulate and fit biological geometries. 'biogeom' incorporates several novel universal parametric equations that can generate the profiles of bird eggs, flowers, linear and lanceolate leaves, seeds, starfish, and tree-rings (Gielis (2003) <doi:10.3732/ajb.90.3.333>; Shi et al. (2020) <doi:10.3390/sym12040645>), three growth-rate curves representing the ontogenetic growth trajectories of animals and plants against time, and the axially symmetrical and integral forms of all these functions (Shi et al. (2017) <doi:10.1016/j.ecolmodel.2017.01.012>; Shi et al. (2021) <doi:10.3390/sym13081524>). The optimization method proposed by Nelder and Mead (1965) <doi:10.1093/comjnl/7.4.308> was used to estimate model parameters. 'biogeom' includes several real data sets of the boundary coordinates of natural shapes, including avian eggs, fruit, lanceolate and ovate leaves, tree rings, seeds, and sea stars,and can be potentially applied to other natural shapes. [...truncated...]
Author: Peijian Shi [aut, cre],
Johan Gielis [aut],
Brady K. Quinn [aut]
Maintainer: Peijian Shi <pjshi@njfu.edu.cn>
Diff between biogeom versions 1.2.0 dated 2022-10-20 and 1.2.1 dated 2022-10-26
biogeom-1.2.0/biogeom/R/curvePE.R |only biogeom-1.2.0/biogeom/R/fitPE.R |only biogeom-1.2.0/biogeom/man/curvePE.Rd |only biogeom-1.2.0/biogeom/man/fitPE.Rd |only biogeom-1.2.1/biogeom/DESCRIPTION | 8 ++++---- biogeom-1.2.1/biogeom/MD5 | 30 +++++++++++++++--------------- biogeom-1.2.1/biogeom/R/DEPE.R | 7 +++---- biogeom-1.2.1/biogeom/R/EPE.R | 9 +++++---- biogeom-1.2.1/biogeom/R/curveEPE.R |only biogeom-1.2.1/biogeom/R/fitEPE.R |only biogeom-1.2.1/biogeom/R/lmPE.R | 3 ++- biogeom-1.2.1/biogeom/build/partial.rdb |binary biogeom-1.2.1/biogeom/man/EPE.Rd | 22 ++++++++++++---------- biogeom-1.2.1/biogeom/man/PE.Rd | 2 +- biogeom-1.2.1/biogeom/man/TSE.Rd | 2 +- biogeom-1.2.1/biogeom/man/VolumePE.Rd | 2 +- biogeom-1.2.1/biogeom/man/curveEPE.Rd |only biogeom-1.2.1/biogeom/man/fitEPE.Rd |only biogeom-1.2.1/biogeom/man/fitNRGE.Rd | 10 +++++++++- biogeom-1.2.1/biogeom/man/lmPE.Rd | 8 ++++++-- 20 files changed, 59 insertions(+), 44 deletions(-)
Title: Bayesian Reliability Estimation
Description: Functionality for reliability estimates. For 'unidimensional' tests:
Coefficient alpha, 'Guttman's' lambda-2/-4/-6, the Greatest lower
bound and coefficient omega_u ('unidimensional') in a Bayesian and a frequentist version.
For multidimensional tests: omega_t (total) and omega_h (hierarchical).
The results include confidence and credible intervals, the
probability of a coefficient being larger than a cutoff,
and a check for the factor models, necessary for the omega coefficients.
The method for the Bayesian 'unidimensional' estimates, except for omega_u,
is sampling from the posterior inverse 'Wishart' for the
covariance matrix based measures (see 'Murphy', 2007,
<https://groups.seas.harvard.edu/courses/cs281/papers/murphy-2007.pdf>.
The Bayesian omegas (u, t, and h) are obtained by
'Gibbs' sampling from the conditional posterior distributions of
(1) the single factor model and (2) the second-order factor model
('Lee', 2007, <https://onlinelibrary.wiley.com/doi/book/10.1002/9 [...truncated...]
Author: Julius M. Pfadt [aut, cre] ,
Don van den Bergh [aut] ,
Joris Goosen [aut]
Maintainer: Julius M. Pfadt <julius.pfadt@gmail.com>
Diff between Bayesrel versions 0.7.4.3 dated 2022-08-10 and 0.7.4.4 dated 2022-10-26
DESCRIPTION | 18 ++--- MD5 | 102 ++++++++++++++++---------------- NAMESPACE | 2 R/bomegasMultiGibbs.R | 17 +++-- R/helpFunsOmegas.R | 126 ++++++++++++++-------------------------- R/omegasMultiLavaan.R | 22 +----- R/reliabilityMultiBayes.R | 42 ++++++++----- R/reliabilityMultiFreq.R | 33 ++++++---- README.md | 20 ------ build/partial.rdb |binary man/bomegas.Rd | 27 ++++---- man/omegasCFA.Rd | 24 +++---- src/BayesrelCpp.cpp | 3 src/Csdp/include/declarations.h | 120 +++++++++++++++++++++----------------- src/Csdp/lib/Fnorm.c | 12 +-- src/Csdp/lib/add_mat.c | 4 - src/Csdp/lib/addscaledmat.c | 7 -- src/Csdp/lib/allocmat.c | 7 -- src/Csdp/lib/calc_dobj.c | 6 - src/Csdp/lib/calc_pobj.c | 6 - src/Csdp/lib/chol.c | 21 ++---- src/Csdp/lib/copy_mat.c | 3 src/Csdp/lib/easysdp.c | 32 ++-------- src/Csdp/lib/freeprob.c | 12 --- src/Csdp/lib/initparams.c | 4 - src/Csdp/lib/initsoln.c | 12 --- src/Csdp/lib/linesearch.c | 15 +--- src/Csdp/lib/make_i.c | 3 src/Csdp/lib/makefill.c | 11 +-- src/Csdp/lib/mat_mult.c | 14 +--- src/Csdp/lib/mat_multsp.c | 21 ++---- src/Csdp/lib/matvec.c | 5 - src/Csdp/lib/norms.c | 12 --- src/Csdp/lib/op_a.c | 7 -- src/Csdp/lib/op_at.c | 7 -- src/Csdp/lib/op_o.c | 14 +--- src/Csdp/lib/packed.c | 16 +---- src/Csdp/lib/psd_feas.c | 28 ++------ src/Csdp/lib/qreig.c | 7 -- src/Csdp/lib/readprob.c | 55 ++++++----------- src/Csdp/lib/readsol.c | 12 --- src/Csdp/lib/sdp.c | 59 ++++-------------- src/Csdp/lib/solvesys.c | 6 - src/Csdp/lib/sortentries.c | 5 - src/Csdp/lib/sym_mat.c | 3 src/Csdp/lib/trace_prod.c | 4 - src/Csdp/lib/tweakgap.c | 18 +---- src/Csdp/lib/user_exit.c | 17 +---- src/Csdp/lib/writeprob.c | 9 -- src/Csdp/lib/writesol.c | 9 -- src/Csdp/lib/zero_mat.c | 3 src/customsdpCpp.cpp | 11 --- 52 files changed, 413 insertions(+), 640 deletions(-)
Title: Cross-Platform 'zip' Compression
Description: Cross-Platform 'zip' Compression Library. A replacement
for the 'zip' function, that does not require any additional
external tools on any platform.
Author: Gabor Csardi, Kuba Podgorski, Rich Geldreich
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between zip versions 2.2.1 dated 2022-09-08 and 2.2.2 dated 2022-10-26
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 4 + README.md | 137 +++++++++++++++++++++--------------------------------------- src/miniz.c | 4 - src/miniz.h | 4 - 6 files changed, 64 insertions(+), 101 deletions(-)
Title: Synthetic Microdata and Spatial MicroSimulation Modeling for ACS
Data
Description: Provides access to curated American Community Survey (ACS) base tables via a wrapper
to library(acs). Builds synthetic micro-datasets at any user-specified geographic level with
ten default attributes; and, conducts spatial microsimulation modeling (SMSM) via simulated
annealing. SMSM is conducted in parallel by default. Lastly, we provide functionality for
data-extensibility of micro-datasets <doi:10.18637/jss.v104.i07>.
Author: Alex Whitworth [aut, cre]
Maintainer: Alex Whitworth <whitworth.alex@gmail.com>
Diff between synthACS versions 1.7.0 dated 2022-08-18 and 1.7.1 dated 2022-10-26
synthACS-1.7.0/synthACS/vignettes/jss_synthACS.lty |only synthACS-1.7.1/synthACS/DESCRIPTION | 8 ++++---- synthACS-1.7.1/synthACS/MD5 | 18 ++++++++++-------- synthACS-1.7.1/synthACS/build/vignette.rds |binary synthACS-1.7.1/synthACS/inst/CITATION | 18 ++++++++++-------- synthACS-1.7.1/synthACS/inst/doc/jss_synthACS.ltx |only synthACS-1.7.1/synthACS/inst/doc/jss_synthACS.pdf |only synthACS-1.7.1/synthACS/inst/doc/split_combine.R | 1 + synthACS-1.7.1/synthACS/inst/doc/split_combine.Rmd | 1 + synthACS-1.7.1/synthACS/inst/doc/split_combine.html | 7 ++++--- synthACS-1.7.1/synthACS/vignettes/jss_synthACS.ltx |only synthACS-1.7.1/synthACS/vignettes/split_combine.Rmd | 1 + 12 files changed, 31 insertions(+), 23 deletions(-)
Title: Different Methods for Stratified Sampling
Description: Integrating a stratified structure in the population in a sampling design can considerably reduce the variance of the Horvitz-Thompson estimator. We propose in this package different methods to handle the selection of a balanced sample in stratified population. For more details see Raphaël Jauslin, Esther Eustache and Yves Tillé (2021) <doi:10.1007/s42081-021-00134-y>. The package propose also a method based on optimal transport and balanced sampling, see Raphaël Jauslin and Yves Tillé <arXiv:2105.08379>.
Author: Raphael Jauslin [aut, cre] ,
Esther Eustache [aut],
Bardia Panahbehagh [aut] ,
Yves Tille [aut]
Maintainer: Raphael Jauslin <raphael.jauslin@unine.ch>
Diff between StratifiedSampling versions 0.4.0 dated 2022-10-21 and 0.4.1 dated 2022-10-26
DESCRIPTION | 6 +- MD5 | 10 ++-- NEWS.md | 5 +- R/sys_deville.R | 31 +++++++++------ inst/doc/ot_matching.html | 94 +++++++++++++++++++++++----------------------- man/sys_deville.Rd | 1 6 files changed, 79 insertions(+), 68 deletions(-)
More information about StratifiedSampling at CRAN
Permanent link
Title: Two Sample Problem Routines using Permutation
Description: The routine twosample_test() in this package runs the
two sample test using various test statistic. The p values are
found via permutation. The routine twosample_power() allows the
calculation of the power in various cases, and plot_power()
draws the corresponding power graphs.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between R2sample versions 0.0.1 dated 2022-10-12 and 1.0.0 dated 2022-10-26
DESCRIPTION | 8 - MD5 | 32 ++-- NEWS.md | 27 +++ R/twosample_power.R | 38 +++-- R/twosample_test.R | 14 +- inst/doc/R2sample.R | 18 +- inst/doc/R2sample.Rmd | 32 ++-- inst/doc/R2sample.html | 70 ++++------ man/twosample_power.Rd | 23 +-- man/twosample_test.Rd | 14 +- src/TS_cont_cpp.cpp | 6 src/TS_disc_cpp.cpp | 16 +- src/perm_test_cpp.cpp | 2 src/permute_disc_cpp.cpp | 2 src/power_cpp.cpp | 12 - vignettes/R2sample.Rmd | 32 ++-- vignettes/R2sample.bib | 327 +---------------------------------------------- 17 files changed, 194 insertions(+), 479 deletions(-)
Title: Programming with Big Data -- Scalable Linear Algebra Packages
Description: Utilizing scalable linear algebra packages mainly
including 'BLACS', 'PBLAS', and 'ScaLAPACK' in double precision via
'pbdMPI' based on 'ScaLAPACK' version 2.0.2.
Author: Wei-Chen Chen [aut, cre],
Drew Schmidt [aut],
George Ostrouchov [aut],
Pragneshkumar Patel [aut],
Brian Ripley [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between pbdSLAP versions 0.3-2 dated 2022-02-04 and 0.3-3 dated 2022-10-26
ChangeLog | 3 DESCRIPTION | 10 - MD5 | 48 ++++---- man/00_pbdSLAP-package.Rd | 4 man/slap_gridinfo.Rd | 4 src/Makevars.in | 2 src/PBLAS/PBblacs.h | 33 ++++++ src/PBLAS/PTOOLS/PB_Cdtypeset.c | 2 src/PBLAS/PTOOLS/PB_Citypeset.c | 11 +- src/PBLAS/PTOOLS/PB_freebuf_.c | 2 src/PBLAS/wcc_PBtools.h | 6 + src/PBLAS/wcc_PTOOLS/wcc_PB_Citypeset.c | 16 ++ src/REDIST/pdgemr.c | 176 ++++++++++++++++---------------- src/REDIST/pdgemr2.c | 92 ++++++++-------- src/REDIST/pdtrmr.c | 158 ++++++++++++++-------------- src/REDIST/pdtrmr2.c | 170 +++++++++++++++--------------- src/REDIST/pgemraux.c | 112 ++++++++++---------- src/REDIST/pigemr.c | 176 ++++++++++++++++---------------- src/REDIST/pigemr2.c | 92 ++++++++-------- src/REDIST/pitrmr.c | 158 ++++++++++++++-------------- src/REDIST/pitrmr2.c | 168 +++++++++++++++--------------- src/ScaLAPACK/getpbbuf.c | 8 - src/ScaLAPACK/pbchkvect.c | 12 +- src/TOOLS/SL_gridreshape.c | 22 ++-- src/TOOLS/reshape.c | 38 +++--- 25 files changed, 791 insertions(+), 732 deletions(-)
Title: Holonomic Gradient Method and Gradient Descent
Description: The holonomic gradient method (HGM, hgm) gives a way to evaluate normalization
constants of unnormalized probability distributions by utilizing holonomic
systems of differential or difference equations. The holonomic gradient descent (HGD, hgd) gives a method
to find maximal likelihood estimates by utilizing the HGM.
Author: Nobuki Takayama, Tamio Koyama, Tomonari Sei, Hiromasa Nakayama, Kenta Nishiyama
Maintainer: Nobuki Takayama <takayama@math.kobe-u.ac.jp>
Diff between hgm versions 1.20 dated 2022-04-07 and 1.22 dated 2022-10-26
DESCRIPTION | 8 +++---- MD5 | 48 ++++++++++++++++++++++---------------------- R/hgm.c2wishart.R | 2 - R/hgm.cwishart.R | 2 - R/hgm.so3nc.R | 2 - R/ko_orthant.R | 2 - R/se_demo.R | 2 - R/se_hgm.R | 2 - man/hgm.Rhgm.Rd | 2 - man/hgm.Rhgm.demo1.Rd | 2 - man/hgm.c2wishart.Rd | 2 - man/hgm.se.hgm.Bingham.Rd | 2 - src/code-n-2f1.c | 6 ++--- src/code-n.c | 2 - src/hgm_ko_orthant.c | 2 - src/jack-n.c | 50 +++++++++++++++++++++++----------------------- src/mh-r.c | 2 - src/mh.c | 4 +-- src/mh.h | 2 - src/rk.c | 6 ++--- src/sfile.c | 2 - src/sfile.h | 2 - src/so3_nc.c | 6 ++--- src/t-rk4.c | 4 +-- src/wmain.c | 10 ++++----- 25 files changed, 87 insertions(+), 87 deletions(-)
Title: Conventional and Fuzzy Data Envelopment Analysis
Description: Set of functions for Data Envelopment Analysis. It runs both classic and fuzzy DEA models.See: Banker, R.; Charnes, A.; Cooper, W.W. (1984). <doi:10.1287/mnsc.30.9.1078>, Charnes, A.; Cooper, W.W.; Rhodes, E. (1978). <doi:10.1016/0377-2217(78)90138-8> and Charnes, A.; Cooper, W.W.; Rhodes, E. (1981). <doi:10.1287/mnsc.27.6.668>.
Author: Vicente Coll-Serrano, Vicente Bolos, Rafael Benitez Suarez <rabesua@uv.es>
Maintainer: Vicente Bolos <vicente.bolos@uv.es>
Diff between deaR versions 1.3 dated 2022-10-07 and 1.3.1 dated 2022-10-26
DESCRIPTION | 6 MD5 | 22 - R/efficiencies.dea.R | 2 R/lambdas.R | 4 R/malmquist_index.R | 767 +++++++++++++++++++++++++++++------------------- R/model_basic.R | 23 - R/references.R | 129 ++++---- R/undesirable_basic.R | 6 build/partial.rdb |binary data/FuzzyExample.RData |binary man/malmquist_index.Rd | 17 - man/model_basic.Rd | 4 12 files changed, 589 insertions(+), 391 deletions(-)
Title: Assessing Skill of Climate Forecasts on Seasonal-to-Decadal
Timescales
Description: Exploits dynamical seasonal forecasts in order to provide
information relevant to stakeholders at the seasonal timescale. The package
contains process-based methods for forecast calibration, bias correction,
statistical and stochastic downscaling, optimal forecast combination and
multivariate verification, as well as basic and advanced tools to obtain
tailored products. This package was developed in the context of the
ERA4CS project MEDSCOPE and the H2020 S2S4E project.
Pérez-Zanón et al. (2022) <doi:10.5194/gmd-15-6115-2022>.
Doblas-Reyes et al. (2005) <doi:10.1111/j.1600-0870.2005.00104.x>.
Mishra et al. (2018) <doi:10.1007/s00382-018-4404-z>.
Sanchez-Garcia et al. (2019) <doi:10.5194/asr-16-165-2019>.
Straus et al. (2007) <doi:10.1175/JCLI4070.1>.
Terzago et al. (2018) <doi:10.5194/nhess-18-2825-2018>.
Torralba et al. (2017) <doi:10.1175/JAMC-D-16-0204.1>.
D'Onofrio et al. (2014) <doi:10.1175/JHM-D-13-096.1>.
Verfaillie et al. (2017) & [...truncated...]
Author: Nuria Perez-Zanon [aut] ,
Louis-Philippe Caron [aut] ,
Carmen Alvarez-Castro [aut] ,
Lauriane Batte [aut],
Carlos Delgado [aut],
Jost von Hardenberg [aut] ,
Llorenc LLedo [aut],
Nicolau Manubens [aut],
Lluis Palma [aut],
Eroteida Sanchez-Garcia [aut] [...truncated...]
Maintainer: Eva Rifa <eva.rifarovira@bsc.es>
Diff between CSTools versions 4.0.1 dated 2021-10-05 and 4.1.0 dated 2022-10-26
CSTools-4.0.1/CSTools/data/lonlat_data.RData |only CSTools-4.0.1/CSTools/data/lonlat_prec.RData |only CSTools-4.0.1/CSTools/inst/doc/UseCase1_WindEvent_March2018.R |only CSTools-4.0.1/CSTools/inst/doc/UseCase2_PrecipitationDownscaling_RainFARM_RF100.R |only CSTools-4.0.1/CSTools/inst/doc/UseCase2_PrecipitationDownscaling_RainFARM_RF4.R |only CSTools-4.0.1/CSTools/inst/doc/UseCase3_data_preparation_SCHEME_model.R |only CSTools-4.0.1/CSTools/inst/doc/launch_UseCase2_PrecipitationDownscaling_RF4.sh |only CSTools-4.0.1/CSTools/man/lonlat_data.Rd |only CSTools-4.1.0/CSTools/DESCRIPTION | 28 CSTools-4.1.0/CSTools/MD5 | 211 +-- CSTools-4.1.0/CSTools/NAMESPACE | 18 CSTools-4.1.0/CSTools/NEWS.md | 18 CSTools-4.1.0/CSTools/R/CST_AdamontAnalog.R | 10 CSTools-4.1.0/CSTools/R/CST_AdamontQQCorr.R | 20 CSTools-4.1.0/CSTools/R/CST_Analogs.R | 12 CSTools-4.1.0/CSTools/R/CST_Anomaly.R | 34 CSTools-4.1.0/CSTools/R/CST_BiasCorrection.R | 242 ++- CSTools-4.1.0/CSTools/R/CST_Calibration.R | 183 ++ CSTools-4.1.0/CSTools/R/CST_CategoricalEnsCombination.R | 12 CSTools-4.1.0/CSTools/R/CST_DynBiasCorrection.R | 2 CSTools-4.1.0/CSTools/R/CST_EnsClustering.R | 23 CSTools-4.1.0/CSTools/R/CST_Load.R | 10 CSTools-4.1.0/CSTools/R/CST_MergeDims.R | 4 CSTools-4.1.0/CSTools/R/CST_MultiEOF.R | 2 CSTools-4.1.0/CSTools/R/CST_MultiMetric.R | 10 CSTools-4.1.0/CSTools/R/CST_MultivarRMSE.R | 6 CSTools-4.1.0/CSTools/R/CST_ProxiesAttractor.R | 2 CSTools-4.1.0/CSTools/R/CST_QuantileMapping.R | 654 ++++------ CSTools-4.1.0/CSTools/R/CST_RFSlope.R | 2 CSTools-4.1.0/CSTools/R/CST_RainFARM.R | 2 CSTools-4.1.0/CSTools/R/CST_RegimesAssign.R | 60 CSTools-4.1.0/CSTools/R/CST_SaveExp.R | 18 CSTools-4.1.0/CSTools/R/CST_SplitDim.R | 4 CSTools-4.1.0/CSTools/R/CST_WeatherRegimes.R | 21 CSTools-4.1.0/CSTools/R/PlotCombinedMap.R | 206 --- CSTools-4.1.0/CSTools/R/PlotForecastPDF.R | 66 - CSTools-4.1.0/CSTools/R/PlotMostLikelyQuantileMap.R | 17 CSTools-4.1.0/CSTools/R/PlotTriangles4Categories.R | 2 CSTools-4.1.0/CSTools/R/as.s2dv_cube.R | 54 CSTools-4.1.0/CSTools/R/s2dv_cube.R | 214 ++- CSTools-4.1.0/CSTools/R/sample_data.R | 50 CSTools-4.1.0/CSTools/R/zzz.R | 86 + CSTools-4.1.0/CSTools/README.md | 52 CSTools-4.1.0/CSTools/build/vignette.rds |binary CSTools-4.1.0/CSTools/data/lonlat_prec.rda |only CSTools-4.1.0/CSTools/data/lonlat_temp.rda |only CSTools-4.1.0/CSTools/inst/doc/Analogs_vignette.R | 2 CSTools-4.1.0/CSTools/inst/doc/Analogs_vignette.Rmd | 18 CSTools-4.1.0/CSTools/inst/doc/Analogs_vignette.html | 18 CSTools-4.1.0/CSTools/inst/doc/Data_Considerations.Rmd | 6 CSTools-4.1.0/CSTools/inst/doc/Data_Considerations.html | 6 CSTools-4.1.0/CSTools/inst/doc/ENSclustering_vignette.Rmd | 2 CSTools-4.1.0/CSTools/inst/doc/ENSclustering_vignette.html | 2 CSTools-4.1.0/CSTools/inst/doc/MostLikelyTercile_vignette.Rmd | 27 CSTools-4.1.0/CSTools/inst/doc/MostLikelyTercile_vignette.html | 27 CSTools-4.1.0/CSTools/inst/doc/MultiModelSkill_vignette.R | 2 CSTools-4.1.0/CSTools/inst/doc/MultiModelSkill_vignette.Rmd | 12 CSTools-4.1.0/CSTools/inst/doc/MultiModelSkill_vignette.html | 11 CSTools-4.1.0/CSTools/inst/doc/MultivarRMSE_vignette.R | 2 CSTools-4.1.0/CSTools/inst/doc/MultivarRMSE_vignette.Rmd | 4 CSTools-4.1.0/CSTools/inst/doc/MultivarRMSE_vignette.html | 4 CSTools-4.1.0/CSTools/inst/doc/PlotForecastPDF.R | 18 CSTools-4.1.0/CSTools/inst/doc/PlotForecastPDF.Rmd | 13 CSTools-4.1.0/CSTools/inst/doc/PlotForecastPDF.html | 12 CSTools-4.1.0/CSTools/inst/doc/RainFARM_vignette.R | 30 CSTools-4.1.0/CSTools/inst/doc/RainFARM_vignette.Rmd | 6 CSTools-4.1.0/CSTools/inst/doc/RainFARM_vignette.html | 8 CSTools-4.1.0/CSTools/inst/doc/WeatherRegimes_vignette.Rmd | 8 CSTools-4.1.0/CSTools/inst/doc/WeatherRegimes_vignette.html | 8 CSTools-4.1.0/CSTools/man/AdamontQQCorr.Rd | 4 CSTools-4.1.0/CSTools/man/BiasCorrection.Rd | 51 CSTools-4.1.0/CSTools/man/CST_AdamontAnalog.Rd | 2 CSTools-4.1.0/CSTools/man/CST_AdamontQQCorr.Rd | 4 CSTools-4.1.0/CSTools/man/CST_Analogs.Rd | 4 CSTools-4.1.0/CSTools/man/CST_Anomaly.Rd | 6 CSTools-4.1.0/CSTools/man/CST_BiasCorrection.Rd | 51 CSTools-4.1.0/CSTools/man/CST_Calibration.Rd | 25 CSTools-4.1.0/CSTools/man/CST_EnsClustering.Rd | 21 CSTools-4.1.0/CSTools/man/CST_Load.Rd | 8 CSTools-4.1.0/CSTools/man/CST_MultiEOF.Rd | 2 CSTools-4.1.0/CSTools/man/CST_MultiMetric.Rd | 6 CSTools-4.1.0/CSTools/man/CST_MultivarRMSE.Rd | 4 CSTools-4.1.0/CSTools/man/CST_ProxiesAttractor.Rd | 2 CSTools-4.1.0/CSTools/man/CST_QuantileMapping.Rd | 139 -- CSTools-4.1.0/CSTools/man/CST_RegimesAssign.Rd | 12 CSTools-4.1.0/CSTools/man/CST_SaveExp.Rd | 2 CSTools-4.1.0/CSTools/man/CST_WeatherRegimes.Rd | 4 CSTools-4.1.0/CSTools/man/Calibration.Rd | 9 CSTools-4.1.0/CSTools/man/EnsClustering.Rd | 2 CSTools-4.1.0/CSTools/man/MultiMetric.Rd | 4 CSTools-4.1.0/CSTools/man/PlotCombinedMap.Rd | 18 CSTools-4.1.0/CSTools/man/PlotForecastPDF.Rd | 75 - CSTools-4.1.0/CSTools/man/PlotMostLikelyQuantileMap.Rd | 12 CSTools-4.1.0/CSTools/man/PlotTriangles4Categories.Rd | 2 CSTools-4.1.0/CSTools/man/QuantileMapping.Rd | 90 - CSTools-4.1.0/CSTools/man/RegimesAssign.Rd | 16 CSTools-4.1.0/CSTools/man/SaveExp.Rd | 16 CSTools-4.1.0/CSTools/man/WeatherRegimes.Rd | 2 CSTools-4.1.0/CSTools/man/as.s2dv_cube.Rd | 6 CSTools-4.1.0/CSTools/man/lonlat_prec.Rd | 25 CSTools-4.1.0/CSTools/man/lonlat_temp.Rd |only CSTools-4.1.0/CSTools/man/s2dv_cube.Rd | 54 CSTools-4.1.0/CSTools/vignettes/Analogs_vignette.Rmd | 18 CSTools-4.1.0/CSTools/vignettes/Data_Considerations.Rmd | 6 CSTools-4.1.0/CSTools/vignettes/ENSclustering_vignette.Rmd | 2 CSTools-4.1.0/CSTools/vignettes/Figures/RainFARM_fig1.png |binary CSTools-4.1.0/CSTools/vignettes/MostLikelyTercile_vignette.Rmd | 27 CSTools-4.1.0/CSTools/vignettes/MultiModelSkill_vignette.Rmd | 12 CSTools-4.1.0/CSTools/vignettes/MultivarRMSE_vignette.Rmd | 4 CSTools-4.1.0/CSTools/vignettes/PlotForecastPDF.Rmd | 13 CSTools-4.1.0/CSTools/vignettes/RainFARM_vignette.Rmd | 6 CSTools-4.1.0/CSTools/vignettes/WeatherRegimes_vignette.Rmd | 8 112 files changed, 1905 insertions(+), 1470 deletions(-)
Title: Bayesian Inference for Log-Normal Data
Description: Bayesian inference under log-normality assumption must be performed very carefully. In fact, under the common priors for the variance, useful quantities in the original data scale (like mean and quantiles) do not have posterior moments that are finite (Fabrizi et al. 2012 <doi:10.1214/12-BA733>). This package allows to easily carry out a proper Bayesian inferential procedure by fixing a suitable distribution (the generalized inverse Gaussian) as prior for the variance. Functions to estimate several kind of means (unconditional, conditional and conditional under a mixed model) and quantiles (unconditional and conditional) are provided.
Author: Aldo Gardini [aut, cre] ,
Enrico Fabrizi [aut] ,
Carlo Trivisano [aut]
Maintainer: Aldo Gardini <aldo.gardini2@unibo.it>
Diff between BayesLN versions 0.2.6 dated 2022-05-02 and 0.2.8 dated 2022-10-26
DESCRIPTION | 10 MD5 | 20 - R/Est_quant.R | 3 R/Hier_model.R | 9 R/prob_func.R | 2 build/vignette.rds |binary inst/doc/BayesLogNormal.html | 732 +++++++++++++++++++++++++++++++++++-------- man/LN_Quant.Rd | 3 man/SMNGmoments.Rd | 2 src/gibbs.cpp | 7 src/rgig.c | 180 +++++----- 11 files changed, 732 insertions(+), 236 deletions(-)
Title: Search and Query CRAN R Packages
Description: Search CRAN metadata about packages by keyword, popularity,
recent activity, package name and more. Uses the 'R-hub' search server,
see <https://r-pkg.org> and the CRAN metadata database, that
contains information about CRAN packages. Note that this is _not_
a CRAN project.
Author: Gabor Csardi [aut, cre],
Maelle Salmon [aut] ,
R Consortium [fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgsearch versions 3.1.1 dated 2022-07-16 and 3.1.2 dated 2022-10-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ R/crandb-public-api.R | 2 +- 4 files changed, 10 insertions(+), 7 deletions(-)
Title: Efficient Plotting of Large-Sized Data
Description: A tool to plot data with large sample size using 'shiny' and 'plotly'.
Relatively small samples are chosen from the data using an appropriate algorithm according to a user-defined x range.
Jonas Van Der Donckt, Jeroen Van Der Donckt, Emiel Deprost (2022) <https://github.com/predict-idlab/plotly-resampler>.
Author: Junta Tagusari [aut, cre, cph],
Jonas Van Der Donckt [cph],
Jeroen Van Der Donckt [cph],
Emiel Deprost [cph]
Maintainer: Junta Tagusari <j.tagusari@eng.hokudai.ac.jp>
Diff between shinyHugePlot versions 0.1.0 dated 2022-09-22 and 0.2.0 dated 2022-10-26
shinyHugePlot-0.1.0/shinyHugePlot/R/LTTB.R |only shinyHugePlot-0.1.0/shinyHugePlot/R/abstract_aggregator.R |only shinyHugePlot-0.1.0/shinyHugePlot/R/abstract_downsampler.R |only shinyHugePlot-0.1.0/shinyHugePlot/R/aggregators.R |only shinyHugePlot-0.1.0/shinyHugePlot/R/shiny_downsampler.R |only shinyHugePlot-0.1.0/shinyHugePlot/man/LTTB.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/abstract_aggregator.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/abstract_downsampler.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/generate_matrix.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/nanosecond_to_label.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/nanotime_to_plotlytime.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/numeric_to_label.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/plotlytime_to_nanotime.Rd |only shinyHugePlot-0.1.0/shinyHugePlot/man/shiny_downsampler.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/DESCRIPTION | 14 shinyHugePlot-0.2.0/shinyHugePlot/MD5 | 69 +- shinyHugePlot-0.2.0/shinyHugePlot/NAMESPACE | 28 shinyHugePlot-0.2.0/shinyHugePlot/NEWS.md | 6 shinyHugePlot-0.2.0/shinyHugePlot/R/LTTB_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/custom_func_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/custom_stat_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/downsampler.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/eLTTB_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/min_max_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/min_max_ovlp_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/nth_pnt_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/null_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/plotly_build_light.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/plotly_datahandler.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/range_stat_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/rng_aggregator.R |only shinyHugePlot-0.2.0/shinyHugePlot/R/shiny_hugeplot.R | 339 ++++------ shinyHugePlot-0.2.0/shinyHugePlot/R/updatePlotlyH.R | 33 shinyHugePlot-0.2.0/shinyHugePlot/R/utils.R | 157 ---- shinyHugePlot-0.2.0/shinyHugePlot/README.md | 126 ++- shinyHugePlot-0.2.0/shinyHugePlot/man/LTTB_aggregator.Rd | 15 shinyHugePlot-0.2.0/shinyHugePlot/man/aggregator.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/man/custom_func_aggregator.Rd | 11 shinyHugePlot-0.2.0/shinyHugePlot/man/custom_stat_aggregator.Rd | 14 shinyHugePlot-0.2.0/shinyHugePlot/man/downsampler.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/man/eLTTB_aggregator.Rd | 13 shinyHugePlot-0.2.0/shinyHugePlot/man/min_max_aggregator.Rd | 13 shinyHugePlot-0.2.0/shinyHugePlot/man/min_max_ovlp_aggregator.Rd | 13 shinyHugePlot-0.2.0/shinyHugePlot/man/nth_pnt_aggregator.Rd | 13 shinyHugePlot-0.2.0/shinyHugePlot/man/null_aggregator.Rd | 14 shinyHugePlot-0.2.0/shinyHugePlot/man/plotly_build_light.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/man/plotly_datahandler.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/man/range_stat_aggregator.Rd | 18 shinyHugePlot-0.2.0/shinyHugePlot/man/rng_aggregator.Rd |only shinyHugePlot-0.2.0/shinyHugePlot/man/shiny_hugeplot.Rd | 50 - shinyHugePlot-0.2.0/shinyHugePlot/man/updatePlotlyH.Rd | 27 52 files changed, 456 insertions(+), 517 deletions(-)
Title: Multi-Level Model Assessment Kit
Description: Multilevel models (mixed effects models) are the statistical tool of choice for analyzing multilevel data (Searle et al, 2009). These models account for the correlated nature of observations within higher level units by adding group-level error terms that augment the singular residual error of a standard OLS regression. Multilevel and mixed effects models often require specialized data pre-processing and further post-estimation derivations and graphics to gain insight into model results. The package presented here, 'mlmtools', is a suite of pre- and post-estimation tools for multilevel models in 'R'. Package implements post-estimation tools designed to work with models estimated using 'lme4''s (Bates et al., 2014) lmer() function, which fits linear mixed effects regression models. Searle, S. R., Casella, G., & McCulloch, C. E. (2009, ISBN:978-0470009598). Bates, D., Mächler, M., Bolker, B., & Walker, S. (2014) <doi:10.18637/jss.v067.i01>.
Author: Laura Jamison [aut, cre],
Jessica Mazen [aut],
Erik Ruzek [aut],
Gus Sjobeck [ctb]
Maintainer: Laura Jamison <lj5yn@virginia.edu>
Diff between mlmtools versions 1.0.1 dated 2022-09-30 and 1.0.2 dated 2022-10-26
DESCRIPTION | 8 +- MD5 | 30 ++++---- R/ICCm.R | 174 ++++++++++++++++++++++++++++++-------------------- R/center.R | 1 R/instruction.R | 7 -- R/mlm_assumptions.R | 3 R/prints.R | 38 +++++----- R/reporting.R |only R/rsqmlm.R | 1 R/varCompare.R | 1 data/reporting.rda |only data/reporting.txt.gz |only man/ICCm.Rd | 16 +++- man/center.Rd | 1 man/instruction.Rd | 7 -- man/reporting.Rd |only man/rsqmlm.Rd | 1 man/varCompare.Rd | 1 18 files changed, 172 insertions(+), 117 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-12 1.3.0
2022-09-18 1.2.0
2022-08-22 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-25 1.0.0