Title: Nearest Neighbor Observation Imputation and Evaluation Tools
Description: Performs nearest neighbor-based imputation using one or more alternative
approaches to processing multivariate data. These include methods based on canonical
correlation: analysis, canonical correspondence analysis, and a multivariate adaptation
of the random forest classification and regression techniques of Leo Breiman and Adele
Cutler. Additional methods are also offered. The package includes functions for
comparing the results from running alternative techniques, detecting imputation targets
that are notably distant from reference observations, detecting and correcting
for bias, bootstrapping and building ensemble imputations, and mapping results.
Author: Jeffrey S. Evans [aut, cre] ,
Nicholas L. Crookston [aut],
Andrew O. Finley [aut],
John Coulston [ctb, com]
Maintainer: Jeffrey S. Evans <jeffrey_evans@tnc.org>
Diff between yaImpute versions 1.0-32 dated 2020-02-17 and 1.0-33 dated 2022-11-03
DESCRIPTION | 52 ++++++++++++++++++++------------ MD5 | 75 +++++++++++++++++++++++------------------------ NEWS | 8 +++++ R/applyMask.R | 2 - R/asciigridimpute.R | 6 ++- R/correctbias.R | 10 +++--- R/errorstats.R | 6 +-- R/findFactors.R | 4 +- R/foruse.R | 2 - R/impute.R | 2 - R/mostused.R | 2 - R/newtargets.R | 5 +-- R/notablydifferent.R | 6 +-- R/notablydistant.R | 2 - R/plot.yai.R | 2 - R/uniondatajoin.R | 2 - R/yai.R | 4 +- R/yaiRFsummary.R | 4 +- R/yaiVarImp.R | 2 - build |only data/MoscowMtStJoe.RData |binary data/TallyLake.RData |binary inst/CITATION | 12 +++---- man/MoscowMtStJoe.Rd | 2 - man/TallyLake.Rd | 11 +++--- man/ann.Rd | 2 - man/applyMask.Rd | 2 - man/asciigridimpute.Rd | 2 - man/cor.yai.Rd | 2 - man/correctbias.Rd | 2 - man/ensembleImpute.Rd | 2 - man/errorStats.Rd | 6 +-- man/impute.yai.Rd | 2 - man/notablydifferent.Rd | 2 - man/rmsd.yai.Rd | 4 +- man/varSelection.Rd | 4 +- man/vars.Rd | 4 +- man/whatsMax.Rd | 2 - man/yai.Rd | 4 +- 39 files changed, 144 insertions(+), 117 deletions(-)
Title: Embedded JavaScript and WebAssembly Engine for R
Description: An R interface to V8: Google's open source JavaScript and WebAssembly
engine. This package can be compiled either with V8 version 6 and up or NodeJS
when built as a shared library.
Author: Jeroen Ooms [aut, cre] ,
Jan Marvin Garbuszus [ctb]
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between V8 versions 4.2.1 dated 2022-08-07 and 4.2.2 dated 2022-11-03
DESCRIPTION | 17 ++-- MD5 | 23 +++--- NEWS | 4 + R/V8.R | 1 build/partial.rdb |binary build/vignette.rds |binary configure | 23 +++++- inst/doc/npm.html | 175 ++++++++++++++++++++---------------------------- inst/doc/v8_intro.html | 177 +++++++++++++++++++++---------------------------- src/RcppExports.cpp | 20 ++--- src/V8_types.h | 12 ++- src/bindings.cpp | 57 ++++++++++----- tools/version.cpp |only 13 files changed, 257 insertions(+), 252 deletions(-)
Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase
<https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and
collaborative data management platform. Functions included for querying
ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre],
Luke Winslow [aut],
Scott Chamberlain [ctb],
Alison Appling [ctb],
Jordan Read [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between sbtools versions 1.1.20 dated 2022-10-28 and 1.1.21 dated 2022-11-03
DESCRIPTION | 9 +++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 6 ++++++ R/REST_helpers.R | 22 ++++++++++++---------- R/authenticate_sb.R | 42 ++++++++++++++++++++++++++++-------------- R/gql_helpers.R | 6 +++--- R/item_file_download.R | 10 +++++----- R/item_upload_files.R | 21 +++++++++++++++------ R/session_details.R | 4 ++-- R/session_logout.R | 2 +- R/session_renew.R | 29 +++++++++++++++++++++++------ README.md | 13 ++++++------- man/authenticate_sb.Rd | 4 +++- 13 files changed, 121 insertions(+), 71 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.9.2.1 dated 2022-09-29 and 0.9.3 dated 2022-11-03
NNS-0.9.2.1/NNS/R/Mode.R |only NNS-0.9.3/NNS/DESCRIPTION | 13 NNS-0.9.3/NNS/MD5 | 181 +++--- NNS-0.9.3/NNS/NAMESPACE | 4 NNS-0.9.3/NNS/R/ANOVA.R | 9 NNS-0.9.3/NNS/R/ARMA.R | 65 -- NNS-0.9.3/NNS/R/ARMA_optim.R | 272 ++++------ NNS-0.9.3/NNS/R/Boost.R | 10 NNS-0.9.3/NNS/R/Causal_matrix.R | 2 NNS-0.9.3/NNS/R/Central_tendencies.R |only NNS-0.9.3/NNS/R/Copula.R | 2 NNS-0.9.3/NNS/R/Dependence.R | 18 NNS-0.9.3/NNS/R/Dependence_matrix.R | 32 - NNS-0.9.3/NNS/R/FSD.R | 2 NNS-0.9.3/NNS/R/Internal_Functions.R | 73 -- NNS-0.9.3/NNS/R/LPM_UPM_VaR.R | 2 NNS-0.9.3/NNS/R/Multivariate_Regression.R | 42 - NNS-0.9.3/NNS/R/NNS_Distance.R | 2 NNS-0.9.3/NNS/R/NNS_VAR.R | 221 ++++---- NNS-0.9.3/NNS/R/NNS_meboot.R | 5 NNS-0.9.3/NNS/R/NNS_term_matrix.R | 6 NNS-0.9.3/NNS/R/Normalization.R | 4 NNS-0.9.3/NNS/R/Nowcast.R | 21 NNS-0.9.3/NNS/R/Numerical_Differentiation.R | 3 NNS-0.9.3/NNS/R/Partial_Moments.R | 50 + NNS-0.9.3/NNS/R/Partition_Map.R | 2 NNS-0.9.3/NNS/R/RcppExports.R | 22 NNS-0.9.3/NNS/R/Regression.R | 89 --- NNS-0.9.3/NNS/R/SD_Efficient_Set.R | 13 NNS-0.9.3/NNS/R/SSD.R | 2 NNS-0.9.3/NNS/R/Seasonality_Test.R | 10 NNS-0.9.3/NNS/R/Stack.R | 35 - NNS-0.9.3/NNS/R/TSD.R | 2 NNS-0.9.3/NNS/R/Uni_Causation.R | 2 NNS-0.9.3/NNS/R/Uni_SD_Routines.R | 9 NNS-0.9.3/NNS/R/dy_d_wrt.R | 163 ++--- NNS-0.9.3/NNS/R/dy_dx.R | 5 NNS-0.9.3/NNS/R/gvload.R | 3 NNS-0.9.3/NNS/README.md | 4 NNS-0.9.3/NNS/build/partial.rdb |binary NNS-0.9.3/NNS/build/vignette.rds |binary NNS-0.9.3/NNS/inst/doc/NNSvignette_Classification.R | 47 + NNS-0.9.3/NNS/inst/doc/NNSvignette_Classification.Rmd | 36 + NNS-0.9.3/NNS/inst/doc/NNSvignette_Classification.html | 163 +++-- NNS-0.9.3/NNS/inst/doc/NNSvignette_Clustering_and_Regression.R | 90 ++- NNS-0.9.3/NNS/inst/doc/NNSvignette_Clustering_and_Regression.Rmd | 74 ++ NNS-0.9.3/NNS/inst/doc/NNSvignette_Clustering_and_Regression.html | 104 ++- NNS-0.9.3/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.R | 10 NNS-0.9.3/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-0.9.3/NNS/inst/doc/NNSvignette_Correlation_and_Dependence.html | 23 NNS-0.9.3/NNS/inst/doc/NNSvignette_Forecasting.R | 146 ++++- NNS-0.9.3/NNS/inst/doc/NNSvignette_Forecasting.Rmd | 132 +++- NNS-0.9.3/NNS/inst/doc/NNSvignette_Forecasting.html | 181 +++--- NNS-0.9.3/NNS/inst/doc/NNSvignette_Partial_Moments.R | 5 NNS-0.9.3/NNS/inst/doc/NNSvignette_Partial_Moments.Rmd | 9 NNS-0.9.3/NNS/inst/doc/NNSvignette_Partial_Moments.html | 115 ++-- NNS-0.9.3/NNS/man/LPM.VaR.Rd | 2 NNS-0.9.3/NNS/man/NNS.ANOVA.Rd | 2 NNS-0.9.3/NNS/man/NNS.ARMA.Rd | 9 NNS-0.9.3/NNS/man/NNS.ARMA.optim.Rd | 10 NNS-0.9.3/NNS/man/NNS.CDF.Rd | 2 NNS-0.9.3/NNS/man/NNS.FSD.Rd | 2 NNS-0.9.3/NNS/man/NNS.FSD.uni.Rd | 2 NNS-0.9.3/NNS/man/NNS.SD.efficient.set.Rd | 2 NNS-0.9.3/NNS/man/NNS.SSD.Rd | 2 NNS-0.9.3/NNS/man/NNS.SSD.uni.Rd | 2 NNS-0.9.3/NNS/man/NNS.TSD.Rd | 2 NNS-0.9.3/NNS/man/NNS.TSD.uni.Rd | 2 NNS-0.9.3/NNS/man/NNS.VAR.Rd | 2 NNS-0.9.3/NNS/man/NNS.copula.Rd | 2 NNS-0.9.3/NNS/man/NNS.dep.Rd | 11 NNS-0.9.3/NNS/man/NNS.diff.Rd | 3 NNS-0.9.3/NNS/man/NNS.gravity.Rd |only NNS-0.9.3/NNS/man/NNS.meboot.Rd | 1 NNS-0.9.3/NNS/man/NNS.mode.Rd | 4 NNS-0.9.3/NNS/man/NNS.moments.Rd |only NNS-0.9.3/NNS/man/NNS.norm.Rd | 2 NNS-0.9.3/NNS/man/NNS.nowcast.Rd | 4 NNS-0.9.3/NNS/man/NNS.part.Rd | 2 NNS-0.9.3/NNS/man/NNS.reg.Rd | 4 NNS-0.9.3/NNS/man/NNS.seas.Rd | 2 NNS-0.9.3/NNS/man/NNS.stack.Rd | 4 NNS-0.9.3/NNS/man/NNS.term.matrix.Rd | 6 NNS-0.9.3/NNS/man/NNS_bin.Rd |only NNS-0.9.3/NNS/man/dy.dx.Rd | 3 NNS-0.9.3/NNS/src/RcppExports.cpp | 15 NNS-0.9.3/NNS/src/partial_moments_rcpp.cpp | 68 ++ NNS-0.9.3/NNS/tests/testthat/Rplots.pdf |binary NNS-0.9.3/NNS/tests/testthat/test_ANOVA.R | 4 NNS-0.9.3/NNS/vignettes/NNSvignette_Classification.Rmd | 36 + NNS-0.9.3/NNS/vignettes/NNSvignette_Clustering_and_Regression.Rmd | 74 ++ NNS-0.9.3/NNS/vignettes/NNSvignette_Correlation_and_Dependence.Rmd | 10 NNS-0.9.3/NNS/vignettes/NNSvignette_Forecasting.Rmd | 132 +++- NNS-0.9.3/NNS/vignettes/NNSvignette_Partial_Moments.Rmd | 9 94 files changed, 1835 insertions(+), 1147 deletions(-)
Title: Tidy Modelling for Nested Data
Description: A modelling framework for nested data using the 'tidymodels'
ecosystem. Specify how to nest data using the 'recipes' package, create
testing and training splits using 'rsample', and fit models to this data
using the 'parsnip' and 'workflows' packages. Allows any model to be fit
to nested data.
Author: Ashby Thorpe [aut, cre] ,
Hadley Wickham [ctb]
Maintainer: Ashby Thorpe <ashbythorpe@gmail.com>
Diff between nestedmodels versions 1.0.1 dated 2022-10-10 and 1.0.2 dated 2022-11-03
DESCRIPTION | 15 ++-- MD5 | 52 +++++++-------- NEWS.md | 6 + R/augment.R | 2 R/combine_rsets.R | 2 R/fit_xy.R | 4 - R/multi_predict.R | 2 R/nest_data.R | 4 - R/nested_resamples.R | 2 R/predict.R | 2 R/step_nest.R | 4 - R/tidy.R | 8 +- README.md | 51 ++++++++------ build/vignette.rds |binary inst/doc/nestedmodels-limitations.html | 2 inst/doc/nestedmodels.Rmd | 2 inst/doc/nestedmodels.html | 114 ++++++++++++++++----------------- man/nestedmodels-package.Rd | 5 + tests/testthat/test-combine_rsets.R | 2 tests/testthat/test-multi_predict.R | 2 tests/testthat/test-nest_data.R | 30 ++++---- tests/testthat/test-nested_model.R | 8 +- tests/testthat/test-nested_model_fit.R | 2 tests/testthat/test-nested_resamples.R | 2 tests/testthat/test-step_nest.R | 12 +-- tests/testthat/test-tidy.R | 2 vignettes/nestedmodels.Rmd | 2 27 files changed, 179 insertions(+), 160 deletions(-)
Title: Multivariate and Propensity Score Matching with Balance
Optimization
Description: Provides functions for multivariate and propensity score matching
and for finding optimal balance based on a genetic search algorithm.
A variety of univariate and multivariate metrics to
determine if balance has been obtained are also provided. For
details, see the paper by Jasjeet Sekhon
(2007, <doi:10.18637/jss.v042.i07>).
Author: Jasjeet Singh Sekhon [aut, cre],
Theo Saarinen [aut]
Maintainer: Jasjeet Singh Sekhon <jas.sekhon@yale.edu>
Diff between Matching versions 4.10-4 dated 2022-10-29 and 4.10-8 dated 2022-11-03
Matching-4.10-4/Matching/tests/AbadieImbens.R |only Matching-4.10-4/Matching/tests/AbadieImbens.Rout.save |only Matching-4.10-4/Matching/tests/DehejiaWahba.R |only Matching-4.10-4/Matching/tests/DehejiaWahba.Rout.save |only Matching-4.10-4/Matching/tests/GenMatch.R |only Matching-4.10-4/Matching/tests/GenMatch.Rout.save |only Matching-4.10-4/Matching/tests/Matchby.R |only Matching-4.10-4/Matching/tests/Matchby.Rout.save |only Matching-4.10-8/Matching/DESCRIPTION | 12 ++++++------ Matching-4.10-8/Matching/MD5 | 18 ++++++++---------- Matching-4.10-8/Matching/src/matching.cc | 16 ++++++---------- Matching-4.10-8/Matching/tests/testthat |only Matching-4.10-8/Matching/tests/testthat.R |only 13 files changed, 20 insertions(+), 26 deletions(-)
Title: Data Cleaner for Anthropometric Measurements
Description: Identifies implausible anthropometric (e.g., height,
weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.
Author: Daymont Carrie [ctb, cre],
Grundmeier Robert [aut],
Miller Jeffrey [aut],
Campos Diego [aut],
Chudnov Dan [ctb],
De los Santos Hannah [ctb],
Cao Lusha [ctb],
Silva Steffani [ctb],
Zhang Hanzhe [ctb],
Boyas Matt [ctb],
Freedman David [ctb],
Achilleos [...truncated...]
Maintainer: Daymont Carrie <cdaymont@pennstatehealth.psu.edu>
Diff between growthcleanr versions 2.0.2 dated 2022-09-13 and 2.0.3 dated 2022-11-03
DESCRIPTION | 16 LICENSE | 4 MD5 | 100 NAMESPACE | 68 NEWS.md | 397 +-- R/adjustcarryforward.R | 3610 +++++++++++++++---------------- R/adult_clean.R | 3356 ++++++++++++++-------------- R/adult_support.R | 1896 ++++++++-------- R/cdc.R | 712 +++--- R/data.R | 26 R/extdata.R | 414 +-- R/growth.R | 2032 ++++++++--------- R/pediatric_clean.R | 2942 ++++++++++++------------- R/pediatric_support.R | 322 +- R/testacf_func.R | 750 +++--- R/utils.R | 660 ++--- README.md | 230 + exec/gcdriver.R | 348 +- exec/testadjustcf.R | 782 +++--- inst/CITATION | 48 man/CDCref_d.Rd | 28 man/acf_answers.Rd | 126 - man/adjustcarryforward.Rd | 248 +- man/bmianthro.Rd | 34 man/cleangrowth.Rd | 366 +-- man/ewma.Rd | 96 man/ext_bmiz.Rd | 222 - man/growth_cdc_ext.Rd | 34 man/lenanthro.Rd | 34 man/longwide.Rd | 130 - man/nhanes-reference-medians.Rd | 30 man/read_anthro.Rd | 54 man/recode_sex.Rd | 102 man/sd_median.Rd | 84 man/simple_bmi.Rd | 86 man/splitinput.Rd | 102 man/syngrowth.Rd | 44 man/tanner_ht_vel.Rd | 34 man/tanner_ht_vel_with_2sd.Rd | 36 man/test_syngrowth_sas_output_compare.Rd | 28 man/test_syngrowth_wide.Rd | 28 man/testacf.Rd | 120 - man/weianthro.Rd | 34 man/who_ht_maxvel.Rd | 36 man/who_ht_maxvel_2sd.Rd | 36 man/who_ht_vel_2sd.Rd | 36 man/who_ht_vel_3sd.Rd | 36 tests/testthat.R | 8 tests/testthat/test-cdc.R | 118 - tests/testthat/test-cleangrowth.R | 444 +-- tests/testthat/test-utils.R | 840 +++---- 51 files changed, 11202 insertions(+), 11165 deletions(-)
Title: Spatial Visualization with ggplot2
Description: A collection of functions to visualize spatial data and models
on top of static maps from various online sources (e.g Google Maps and Stamen
Maps). It includes tools common to those tasks, including functions for
geolocation and routing.
Author: David Kahle [aut, cre] ,
Hadley Wickham [aut] ,
Scott Jackson [aut],
Mikko Korpela [ctb]
Maintainer: David Kahle <david@kahle.io>
Diff between ggmap versions 3.0.0 dated 2019-02-04 and 3.0.1 dated 2022-11-03
ggmap-3.0.0/ggmap/R/ggplot2.R |only ggmap-3.0.0/ggmap/data/datalist |only ggmap-3.0.1/ggmap/DESCRIPTION | 19 - ggmap-3.0.1/ggmap/MD5 | 166 +++++++------- ggmap-3.0.1/ggmap/NAMESPACE | 17 + ggmap-3.0.1/ggmap/NEWS.md |only ggmap-3.0.1/ggmap/R/LonLat2XY.R | 13 - ggmap-3.0.1/ggmap/R/OSM_scale_lookup.R | 8 ggmap-3.0.1/ggmap/R/XY2LonLat.R | 13 - ggmap-3.0.1/ggmap/R/attach.R | 17 - ggmap-3.0.1/ggmap/R/bb2bbox.R | 2 ggmap-3.0.1/ggmap/R/calc_zoom.r | 12 - ggmap-3.0.1/ggmap/R/crime.R | 4 ggmap-3.0.1/ggmap/R/file_drawer.R | 10 ggmap-3.0.1/ggmap/R/geocode.R | 119 ++++++++-- ggmap-3.0.1/ggmap/R/geom_leg.R | 25 +- ggmap-3.0.1/ggmap/R/get_cloudmademap.R | 110 +-------- ggmap-3.0.1/ggmap/R/get_googlemap.R | 90 ++++--- ggmap-3.0.1/ggmap/R/get_map.R | 39 +-- ggmap-3.0.1/ggmap/R/get_navermap.R | 6 ggmap-3.0.1/ggmap/R/get_openstreetmap.R | 108 ++------- ggmap-3.0.1/ggmap/R/get_stamenmap.R | 59 +++-- ggmap-3.0.1/ggmap/R/ggimage.R | 22 + ggmap-3.0.1/ggmap/R/gglocator.R | 20 - ggmap-3.0.1/ggmap/R/ggmap-package.R | 11 ggmap-3.0.1/ggmap/R/ggmap.R | 54 ++-- ggmap-3.0.1/ggmap/R/ggmap_options.R | 40 ++- ggmap-3.0.1/ggmap/R/helpers.R | 10 ggmap-3.0.1/ggmap/R/inset.R | 22 - ggmap-3.0.1/ggmap/R/inset_raster.R | 38 ++- ggmap-3.0.1/ggmap/R/make_bbox.R | 18 - ggmap-3.0.1/ggmap/R/mapdist.R | 107 +++++++-- ggmap-3.0.1/ggmap/R/not-exported-ggplot2.R |only ggmap-3.0.1/ggmap/R/not-exported-plyr.R |only ggmap-3.0.1/ggmap/R/print.R | 28 -- ggmap-3.0.1/ggmap/R/qmap.R | 12 - ggmap-3.0.1/ggmap/R/qmplot.R | 60 ++--- ggmap-3.0.1/ggmap/R/register_google.R | 64 +++-- ggmap-3.0.1/ggmap/R/revgeocode.R | 21 + ggmap-3.0.1/ggmap/R/route.R | 151 +------------ ggmap-3.0.1/ggmap/R/theme_inset.R | 2 ggmap-3.0.1/ggmap/R/theme_nothing.R | 2 ggmap-3.0.1/ggmap/R/trek.R | 24 +- ggmap-3.0.1/ggmap/R/wind.R | 17 - ggmap-3.0.1/ggmap/README.md | 266 +++++++++++++---------- ggmap-3.0.1/ggmap/man/LonLat2XY.Rd | 12 - ggmap-3.0.1/ggmap/man/OSM_scale_lookup.Rd | 8 ggmap-3.0.1/ggmap/man/XY2LonLat.Rd | 12 - ggmap-3.0.1/ggmap/man/bb2bbox.Rd | 2 ggmap-3.0.1/ggmap/man/calc_zoom.Rd | 2 ggmap-3.0.1/ggmap/man/crime.Rd | 4 ggmap-3.0.1/ggmap/man/geocode.Rd | 64 ++++- ggmap-3.0.1/ggmap/man/geom_leg.Rd | 139 +++--------- ggmap-3.0.1/ggmap/man/get_cloudmademap.Rd | 31 +- ggmap-3.0.1/ggmap/man/get_googlemap.Rd | 79 ++++-- ggmap-3.0.1/ggmap/man/get_map.Rd | 42 ++- ggmap-3.0.1/ggmap/man/get_navermap.Rd | 34 +- ggmap-3.0.1/ggmap/man/get_openstreetmap.Rd | 57 ++-- ggmap-3.0.1/ggmap/man/get_stamenmap.Rd | 43 ++- ggmap-3.0.1/ggmap/man/ggimage.Rd | 16 - ggmap-3.0.1/ggmap/man/gglocator.Rd | 2 ggmap-3.0.1/ggmap/man/ggmap.Rd | 79 +++--- ggmap-3.0.1/ggmap/man/ggmap_options.Rd | 24 +- ggmap-3.0.1/ggmap/man/ggmapplot.Rd | 18 + ggmap-3.0.1/ggmap/man/inset.Rd | 22 - ggmap-3.0.1/ggmap/man/inset_raster.Rd | 37 ++- ggmap-3.0.1/ggmap/man/legs2route.Rd | 4 ggmap-3.0.1/ggmap/man/make_bbox.Rd | 12 - ggmap-3.0.1/ggmap/man/mapdist.Rd | 73 +++++- ggmap-3.0.1/ggmap/man/qmap.Rd | 10 ggmap-3.0.1/ggmap/man/qmplot.Rd | 90 ++++--- ggmap-3.0.1/ggmap/man/reexports.Rd | 2 ggmap-3.0.1/ggmap/man/register_google.Rd | 38 +-- ggmap-3.0.1/ggmap/man/revgeocode.Rd | 21 + ggmap-3.0.1/ggmap/man/route.Rd | 31 +- ggmap-3.0.1/ggmap/man/theme_inset.Rd | 2 ggmap-3.0.1/ggmap/man/theme_nothing.Rd | 2 ggmap-3.0.1/ggmap/man/trek.Rd | 28 +- ggmap-3.0.1/ggmap/man/wind.Rd | 14 - ggmap-3.0.1/ggmap/man/zips.Rd | 4 ggmap-3.0.1/ggmap/tests/testthat/test-encoding.R |only ggmap-3.0.1/ggmap/tools/README-faceting-1.png |binary ggmap-3.0.1/ggmap/tools/README-google_maps-1.png |binary ggmap-3.0.1/ggmap/tools/README-maptypes-1.png |binary ggmap-3.0.1/ggmap/tools/README-qmplot-1.png |binary ggmap-3.0.1/ggmap/tools/README-route_trek-1.png |binary ggmap-3.0.1/ggmap/tools/README-styling-1.png |binary 87 files changed, 1535 insertions(+), 1349 deletions(-)
Title: Methods for Changepoint Detection
Description: Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean(), cpt.var(), cpt.meanvar() functions should be your first point of call.
Author: Rebecca Killick [aut, cre],
Kaylea Haynes [aut],
Idris Eckley [ths],
Paul Fearnhead [ctb, ths],
Robin Long [ctb],
Jamie Lee [ctr]
Maintainer: Rebecca Killick <r.killick@lancs.ac.uk>
Diff between changepoint versions 2.2.3 dated 2022-03-14 and 2.2.4 dated 2022-11-03
DESCRIPTION | 14 - MD5 | 37 ++- NEWS | 63 ------ R/cpt.class.R | 47 +++- R/exp.R | 10 - R/gamma.R | 10 - R/multiple.nonparametric.R | 8 R/multiple.norm.R | 12 - R/poisson.R | 10 - R/single.nonparametric.R | 12 - R/single.norm.R | 16 - inst/CITATION | 2 man/changepoint-package.Rd | 4 man/cpts--methods.Rd | 4 man/cpts-methods.Rd | 5 man/cpts.Rd | 5 src/BinSeg_one_func_minseglen.c | 395 +++++++++++++++++++--------------------- src/PELT_one_func_minseglen.c | 232 +++++++++++------------ tests/figs |only tests/testthat/test-plot.R |only 20 files changed, 443 insertions(+), 443 deletions(-)
Title: Bayesian Model Selection and Averaging for Non-Local and Local
Priors
Description: Bayesian model selection and averaging for regression and mixtures for non-local and selected local priors.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck, Oriol Abril, Miquel Torrens
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 3.1.4 dated 2022-08-19 and 3.2.0 dated 2022-11-03
ChangeLog | 13 DESCRIPTION | 8 MD5 | 19 - NAMESPACE | 5 R/AllGenerics.R | 3 R/cil.R | 711 +++++++++++++++++++++++++++++--------------------- R/modelSelection.R | 3 inst/doc/mombf.pdf |binary man/cil.Rd | 80 +++-- man/modelSelection.Rd | 14 man/plotprior.Rd |only 11 files changed, 513 insertions(+), 343 deletions(-)
Title: 3D Animated Interactive Visualizations Using SVG and WebGL
Description: Creates 3D animated, interactive visualizations that can be viewed in a web browser.
Author: Aaron M Olsen, Alejandro J Romero
Maintainer: Aaron M Olsen <aarolsen@gmail.com>
Diff between svgViewR versions 1.4.1 dated 2020-10-03 and 1.4.2 dated 2022-11-03
DESCRIPTION | 10 - MD5 | 22 ++-- NAMESPACE | 1 R/objToJSON.R | 2 R/readCam.R | 2 R/svg.arrow.R | 2 R/svg.close.R | 241 +----------------------------------------------- R/svg.farrow.R | 2 R/svg.mesh.R | 10 - R/svg.new.R | 34 ------ man/objToJSON.Rd | 6 - man/svgViewR-package.Rd | 4 12 files changed, 40 insertions(+), 296 deletions(-)
Title: Date and Time Extensions for the 'rebus' Package
Description: Build regular expressions piece by piece using human readable code.
This package contains date and time functionality, and is primarily intended
to be used by package developers.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between rebus.datetimes versions 0.0-1 dated 2015-12-16 and 0.0-2 dated 2022-11-03
DESCRIPTION | 11 MD5 | 25 - NAMESPACE | 156 +++--- NEWS.md |only R/datetime-constants.R | 592 ++++++++++++------------ R/datetime.R | 654 +++++++++++++------------- R/imports.R | 28 - README.md | 7 man/DateTime.Rd | 739 +++++++++++++++++------------- man/IsoClasses.Rd | 5 man/get_weekdays.Rd | 111 ++-- tests/testthat.R | 8 tests/testthat/test-datetime.R | 22 tests/testthat/test-get-weekdays-months.R | 84 +-- 14 files changed, 1278 insertions(+), 1164 deletions(-)
More information about rebus.datetimes at CRAN
Permanent link
Title: Word Embedding Research Framework for Psychological Science
Description: An integrated toolbox of word embedding research that provides:
(1) a collection of 'pre-trained' word vectors in the '.RData'
compressed format <https://psychbruce.github.io/WordVector_RData.pdf>;
(2) a variety of functions to process, analyze, and visualize word vectors;
(3) a range of tests to examine conceptual associations, including
the Word Embedding Association Test <doi:10.1126/science.aal4230>
and the Relative Norm Distance <doi:10.1073/pnas.1720347115>,
with permutation test of significance;
(4) a set of training methods to locally train word vectors from
text corpora, including 'Word2Vec' <arXiv:1301.3781>,
'GloVe' <doi:10.3115/v1/D14-1162>, and 'FastText' <arXiv:1607.04606>.
Author: Han-Wu-Shuang Bao [aut, cre]
Maintainer: Han-Wu-Shuang Bao <baohws@foxmail.com>
Diff between PsychWordVec versions 0.1.0 dated 2022-08-22 and 0.1.2 dated 2022-11-03
DESCRIPTION | 18 + MD5 | 23 +- NAMESPACE | 5 NEWS.md | 14 + R/PsychWordVec.R | 432 ++++++++++++++++++++++++++++++++------------ R/utils.R |only README.md | 10 - data/demodata.rda |binary man/data_wordvec_reshape.Rd | 17 + man/plot_wordvec_tSNE.Rd | 2 man/tab_similarity.Rd | 9 man/test_RND.Rd | 56 ++++- man/test_WEAT.Rd | 126 ++++++++++-- 13 files changed, 538 insertions(+), 174 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-31 1.0.5
2020-06-02 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-12-09 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-04 0.5-2
2018-05-27 0.5-1
2015-01-05 0.5-0
2012-04-20 0.4-0
2011-12-27 0.3-5
2011-10-24 0.3-4
2011-04-24 0.3-3
2010-10-28 0.3-2
2010-08-17 0.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-03-02 1.5
2013-10-16 1.3
2012-04-05 1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-20 1.1.4
2021-04-15 1.1.2
2021-01-09 1.1.0
2020-11-27 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-14 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-12 1.0
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through
matching, weighting or subclassification, for example, using propensity scores. Includes
integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt',
'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing
functions. Users can also specify data for balance assessment not generated through
the above packages. Also included are methods for assessing balance in clustered or
multiply imputed data sets or data sets with longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.4.0 dated 2022-08-15 and 4.4.1 dated 2022-11-03
DESCRIPTION | 10 MD5 | 49 +-- NEWS.md | 12 R/SHARED.R | 47 ++- R/bal.plot.R | 43 +-- R/bal.tab.R | 23 + R/base.bal.tab.R | 34 +- R/functions_for_processing.R | 71 +++-- R/x2base.R | 12 README.md | 31 +- build/cobalt.pdf |binary build/partial.rdb |binary inst/doc/cobalt.R | 119 +++++--- inst/doc/cobalt.Rmd | 121 +++++--- inst/doc/cobalt.html | 404 ++++++++++++++--------------- inst/doc/cobalt_A1_other_packages.html | 215 +++++++-------- inst/doc/cobalt_A2_segmented_data.html | 302 ++++++++++----------- inst/doc/cobalt_A3_longitudinal_treat.html | 160 +++++------ inst/doc/cobalt_A4_love.plot.html | 146 +++++----- man/bal.tab.Rd | 6 man/display_options.Rd | 2 man/macros/macros.Rd | 6 tests |only vignettes/cobalt.Rmd | 121 +++++--- vignettes/references.bib | 2 25 files changed, 1062 insertions(+), 874 deletions(-)
Title: Measure Climate Scenario Alignment of Corporate Loans
Description: These tools help you to assess if a corporate lending
portfolio aligns with climate goals. They summarize key climate
indicators attributed to the portfolio (e.g. production, emission
factors), and calculate alignment targets based on climate scenarios.
They implement in R the last step of the free software 'PACTA' (Paris
Agreement Capital Transition Assessment;
<https://www.transitionmonitor.com/>). Financial institutions use 'PACTA'
to study how their capital allocation decisions align with climate
change mitigation goals.
Author: Jackson Hoffart [aut, cre] ,
Mauro Lepore [aut, ctr] ,
Klaus Hogedorn [aut],
Rocky Mountain Institute [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.analysis versions 0.2.0 dated 2022-05-05 and 0.2.1 dated 2022-11-03
r2dii.analysis-0.2.0/r2dii.analysis/man/figures/logo.svg |only r2dii.analysis-0.2.1/r2dii.analysis/DESCRIPTION | 22 r2dii.analysis-0.2.1/r2dii.analysis/LICENSE | 2 r2dii.analysis-0.2.1/r2dii.analysis/MD5 | 46 +- r2dii.analysis-0.2.1/r2dii.analysis/NEWS.md | 5 r2dii.analysis-0.2.1/r2dii.analysis/R/join_abcd_scenario.R | 6 r2dii.analysis-0.2.1/r2dii.analysis/R/join_ald_scenario.R | 4 r2dii.analysis-0.2.1/r2dii.analysis/R/summarize_weighted_production.R | 20 r2dii.analysis-0.2.1/r2dii.analysis/R/target_market_share.R | 46 +- r2dii.analysis-0.2.1/r2dii.analysis/R/target_sda.R | 61 +- r2dii.analysis-0.2.1/r2dii.analysis/R/utils-tidy-eval.R | 3 r2dii.analysis-0.2.1/r2dii.analysis/R/utils.R | 33 + r2dii.analysis-0.2.1/r2dii.analysis/README.md | 224 ++++------ r2dii.analysis-0.2.1/r2dii.analysis/man/figures/logo.png |only r2dii.analysis-0.2.1/r2dii.analysis/man/r2dii.analysis-package.Rd | 12 r2dii.analysis-0.2.1/r2dii.analysis/man/target_sda.Rd | 2 r2dii.analysis-0.2.1/r2dii.analysis/man/tidyeval.Rd | 3 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/_snaps/join_abcd_scenario.md | 15 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/_snaps/join_ald_scenario.md | 15 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/_snaps/target_market_share.md | 15 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/_snaps/target_sda.md | 31 - r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/test-join_abcd_scenario.R | 2 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/test-join_ald_scenario.R | 2 r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/test-target_market_share.R | 44 + r2dii.analysis-0.2.1/r2dii.analysis/tests/testthat/test-target_sda.R | 48 ++ 25 files changed, 391 insertions(+), 270 deletions(-)
More information about r2dii.analysis at CRAN
Permanent link
Title: Specification of Generalised Linear Mixed Models
Description: Specification of generalised linear mixed models using the 'R6' object-orientated class system. The package provides classes 'Covariance', 'MeanFunction' and 'Model', which allow for flexible specification of generalised linear mixed models, as well as functionality to produce relevant matrices, values, and analyses.
See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a detailed manual.
Author: Sam Watson [aut, cre],
Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 0.1.2 dated 2022-09-22 and 0.1.3 dated 2022-11-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/R6covariance.R | 2 +- build/partial.rdb |binary 4 files changed, 8 insertions(+), 8 deletions(-)
Title: Pre- And Postprocessing of Morphological Data from Relaxed Clock
Bayesian Phylogenetics
Description: Performs automated morphological character partitioning for
phylogenetic analyses and analyze macroevolutionary parameter
outputs from clock (time-calibrated) Bayesian inference analyses, following
concepts introduced by Simões and Pierce (2021) <doi:10.1038/s41559-021-01532-x>.
Author: Tiago Simoes [cre, aut] ,
Noah Greifer [aut] ,
Joelle Barido-Sottani [aut] ,
Stephanie Pierce [aut]
Maintainer: Tiago Simoes <trsimoes87@gmail.com>
Diff between EvoPhylo versions 0.3 dated 2022-08-19 and 0.3.2 dated 2022-11-03
EvoPhylo-0.3.2/EvoPhylo/DESCRIPTION | 8 EvoPhylo-0.3.2/EvoPhylo/MD5 | 116 - EvoPhylo-0.3.2/EvoPhylo/NAMESPACE | 14 EvoPhylo-0.3.2/EvoPhylo/NEWS.md | 12 EvoPhylo-0.3.2/EvoPhylo/R/CharPart.R | 38 EvoPhylo-0.3.2/EvoPhylo/R/ST&P_FBD.R | 32 EvoPhylo-0.3.2/EvoPhylo/R/ST&P_Rates.R | 24 EvoPhylo-0.3.2/EvoPhylo/R/SelectionStrength.R | 358 ++- EvoPhylo-0.3.2/EvoPhylo/R/helpers_beast2.R | 106 - EvoPhylo-0.3.2/EvoPhylo/R/treesWoffset.R | 222 +- EvoPhylo-0.3.2/EvoPhylo/build/vignette.rds |binary EvoPhylo-0.3.2/EvoPhylo/data/RateTable_Means_1p_Clades.rda |only EvoPhylo-0.3.2/EvoPhylo/data/RateTable_Means_3p_Clades.rda |only EvoPhylo-0.3.2/EvoPhylo/data/datalist | 4 EvoPhylo-0.3.2/EvoPhylo/inst/doc/char-part.R | 46 EvoPhylo-0.3.2/EvoPhylo/inst/doc/char-part.Rmd | 81 EvoPhylo-0.3.2/EvoPhylo/inst/doc/char-part.html | 533 ++++- EvoPhylo-0.3.2/EvoPhylo/inst/doc/data_treatment.R | 4 EvoPhylo-0.3.2/EvoPhylo/inst/doc/data_treatment.Rmd | 4 EvoPhylo-0.3.2/EvoPhylo/inst/doc/data_treatment.html | 517 ++++- EvoPhylo-0.3.2/EvoPhylo/inst/doc/fbd-params.R | 67 EvoPhylo-0.3.2/EvoPhylo/inst/doc/fbd-params.Rmd | 107 - EvoPhylo-0.3.2/EvoPhylo/inst/doc/fbd-params.html | 1022 ++++++++-- EvoPhylo-0.3.2/EvoPhylo/inst/doc/offset_handling.R | 25 EvoPhylo-0.3.2/EvoPhylo/inst/doc/offset_handling.Rmd | 29 EvoPhylo-0.3.2/EvoPhylo/inst/doc/offset_handling.html | 496 +++- EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_BEAST2.R |only EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_BEAST2.Rmd |only EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_BEAST2.html |only EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_MrBayes.R |only EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_MrBayes.Rmd |only EvoPhylo-0.3.2/EvoPhylo/inst/doc/rates-selection_MrBayes.html |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/DataMatrix.nex |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_MCC_dna.t |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_MCC_morpho_part1.t |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_MCC_morpho_part2.t |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_MCC_morpho_part3.t |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_Mol.nex |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_Morpho(VarCh)_Extant.nex |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_Morpho(VarCha).nex |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/Penguins_log.log |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/RateTable_Means_Clades.csv |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/RateTable_Medians_Clades.csv |only EvoPhylo-0.3.2/EvoPhylo/inst/extdata/ex_pwt_rate_table.csv |only EvoPhylo-0.3.2/EvoPhylo/man/RateTable_Means_1p_Clades.Rd |only EvoPhylo-0.3.2/EvoPhylo/man/RateTable_Means_3p_Clades.Rd |only EvoPhylo-0.3.2/EvoPhylo/man/clock_reshape.Rd | 7 EvoPhylo-0.3.2/EvoPhylo/man/clockrate_dens_plot.Rd | 6 EvoPhylo-0.3.2/EvoPhylo/man/clockrate_reg_plot.Rd | 6 EvoPhylo-0.3.2/EvoPhylo/man/clockrate_summary.Rd | 4 EvoPhylo-0.3.2/EvoPhylo/man/combine_log.Rd | 2 EvoPhylo-0.3.2/EvoPhylo/man/drop.dummy.beast.Rd | 76 EvoPhylo-0.3.2/EvoPhylo/man/drop.dummy.mb.Rd | 72 EvoPhylo-0.3.2/EvoPhylo/man/get_clockrate_table_BEAST2.Rd | 6 EvoPhylo-0.3.2/EvoPhylo/man/get_pwt_rates_BEAST2.Rd |only EvoPhylo-0.3.2/EvoPhylo/man/get_pwt_rates_MrBayes.Rd |only EvoPhylo-0.3.2/EvoPhylo/man/offset.to.dummy.Rd | 8 EvoPhylo-0.3.2/EvoPhylo/man/offset.to.dummy.metadata.Rd | 8 EvoPhylo-0.3.2/EvoPhylo/man/plot_back_rates.Rd |only EvoPhylo-0.3.2/EvoPhylo/man/plot_treerates_sgn.Rd | 83 EvoPhylo-0.3.2/EvoPhylo/man/write_partitioned_alignments.Rd | 4 EvoPhylo-0.3.2/EvoPhylo/vignettes/char-part.Rmd | 81 EvoPhylo-0.3.2/EvoPhylo/vignettes/data_treatment.Rmd | 4 EvoPhylo-0.3.2/EvoPhylo/vignettes/fbd-params.Rmd | 107 - EvoPhylo-0.3.2/EvoPhylo/vignettes/offset_handling.Rmd | 29 EvoPhylo-0.3.2/EvoPhylo/vignettes/rates-selection_BEAST2.Rmd |only EvoPhylo-0.3.2/EvoPhylo/vignettes/rates-selection_MrBayes.Rmd |only EvoPhylo-0.3.2/EvoPhylo/vignettes/references.bib | 34 EvoPhylo-0.3/EvoPhylo/data/rate_table_clades_means1.rda |only EvoPhylo-0.3/EvoPhylo/data/rate_table_clades_means3.rda |only EvoPhylo-0.3/EvoPhylo/inst/doc/rates-selection.R |only EvoPhylo-0.3/EvoPhylo/inst/doc/rates-selection.Rmd |only EvoPhylo-0.3/EvoPhylo/inst/doc/rates-selection.html |only EvoPhylo-0.3/EvoPhylo/man/get_pwt_rates.Rd |only EvoPhylo-0.3/EvoPhylo/man/rate_table_clades_means1.Rd |only EvoPhylo-0.3/EvoPhylo/man/rate_table_clades_means3.Rd |only EvoPhylo-0.3/EvoPhylo/vignettes/rates-selection.Rmd |only 77 files changed, 3482 insertions(+), 920 deletions(-)
Title: Tools to Match Corporate Lending Portfolios with Climate Data
Description: These tools implement in R a fundamental part of the software
'PACTA' (Paris Agreement Capital Transition Assessment), which is a
free tool that calculates the alignment between financial portfolios
and climate scenarios (<https://www.transitionmonitor.com/>). Financial
institutions use 'PACTA' to study how their capital allocation
decisions align with climate change mitigation goals. This package
matches data from corporate lending portfolios to asset level data
from market-intelligence databases (e.g. power plant capacities,
emission factors, etc.). This is the first step to assess if a
financial portfolio aligns with climate goals.
Author: Jackson Hoffart [aut, cre] ,
Mauro Lepore [aut, ctr] ,
Klaus Hagedorn [aut],
Florence Palandri [aut],
Evgeny Petrovsky [aut],
Rocky Mountain Institute [cph, fnd]
Maintainer: Jackson Hoffart <jackson.hoffart@gmail.com>
Diff between r2dii.match versions 0.1.1 dated 2022-09-05 and 0.1.3 dated 2022-11-03
r2dii.match-0.1.1/r2dii.match/man/figures/logo.svg |only r2dii.match-0.1.3/r2dii.match/DESCRIPTION | 21 ++---- r2dii.match-0.1.3/r2dii.match/LICENSE | 2 r2dii.match-0.1.3/r2dii.match/MD5 | 34 +++++----- r2dii.match-0.1.3/r2dii.match/NAMESPACE | 1 r2dii.match-0.1.3/r2dii.match/NEWS.md | 9 ++ r2dii.match-0.1.3/r2dii.match/R/add_sector_and_borderline.R | 4 - r2dii.match-0.1.3/r2dii.match/R/imports.R | 4 - r2dii.match-0.1.3/r2dii.match/R/match_name.R | 10 +- r2dii.match-0.1.3/r2dii.match/R/prioritize.R | 4 - r2dii.match-0.1.3/r2dii.match/R/restructure_abcd.R | 4 - r2dii.match-0.1.3/r2dii.match/R/to_alias.R | 2 r2dii.match-0.1.3/r2dii.match/README.md | 30 +++----- r2dii.match-0.1.3/r2dii.match/man/figures/logo.png |only r2dii.match-0.1.3/r2dii.match/man/prioritize.Rd | 13 +-- r2dii.match-0.1.3/r2dii.match/man/r2dii.match-package.Rd | 13 ++- r2dii.match-0.1.3/r2dii.match/tests/testthat/test-match_name.R | 2 r2dii.match-0.1.3/r2dii.match/tests/testthat/test-to_alias.R | 1 r2dii.match-0.1.3/r2dii.match/tests/testthat/test-uniquify_id_column.R | 2 19 files changed, 79 insertions(+), 77 deletions(-)
Title: Log-Concave Density Estimation in Arbitrary Dimensions
Description: Software for computing a log-concave (maximum likelihood) estimator for i.i.d. data in any number of dimensions. For a detailed description of the method see Cule, Samworth and Stewart (2010, Journal of Royal Statistical Society Series B, <doi:10.1111/j.1467-9868.2010.00753.x>).
Author: Madeleine Cule, Robert Gramacy, Richard Samworth, Yining Chen
Maintainer: Yining Chen <Y.Chen101@lse.ac.uk>
Diff between LogConcDEAD versions 1.6-5 dated 2022-01-18 and 1.6-6 dated 2022-11-03
DESCRIPTION | 9 +++++---- MD5 | 34 +++++++++++++++++----------------- NEWS | 4 +++- R/dlcd.R | 2 +- R/dslcd.R | 2 +- R/hatA.R | 2 +- R/interpmarglcd.R | 4 ++-- R/rslcd.R | 2 +- build/vignette.rds |binary inst/doc/LogConcDEAD.pdf |binary man/plot.LogConcDEAD.Rd | 3 +-- src/geom.c | 3 +-- src/geom2.c | 2 +- src/logconweights.c | 8 ++++---- src/merge.c | 2 +- src/poly2.c | 2 +- src/solvoptweights.c | 18 ++++++++---------- src/useful.c | 4 +--- 18 files changed, 49 insertions(+), 52 deletions(-)
Title: R Package Distribution of the BayesX C++ Sources
Description: BayesX performs Bayesian inference in structured additive regression (STAR) models.
The R package BayesXsrc provides the BayesX command line tool for easy installation.
A convenient R interface is provided in package R2BayesX.
Author: Nikolaus Umlauf [aut, cre] ,
Daniel Adler [aut],
Thomas Kneib [aut],
Stefan Lang [aut],
Achim Zeileis [aut]
Maintainer: Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>
Diff between BayesXsrc versions 3.0-2 dated 2022-02-20 and 3.0-3 dated 2022-11-03
DESCRIPTION | 8 MD5 | 202 +++++++------- src/bayesxsrc/andrea/IWLS_baseline.cpp | 20 - src/bayesxsrc/andrea/IWLS_baseline.h | 6 src/bayesxsrc/andrea/baseline.cpp | 34 +- src/bayesxsrc/andrea/baseline.h | 2 src/bayesxsrc/andrea/cox.cpp | 4 src/bayesxsrc/andrea/multibaseline.cpp | 10 src/bayesxsrc/andrea/multibaseline.h | 2 src/bayesxsrc/andrea/multistate.cpp | 2 src/bayesxsrc/bib/admin.h | 8 src/bayesxsrc/bib/bayesreg2.cpp | 8 src/bayesxsrc/bib/clstring.cpp | 5 src/bayesxsrc/bib/clstring.h | 2 src/bayesxsrc/bib/data.cpp | 60 ++-- src/bayesxsrc/bib/dataobj.cpp | 6 src/bayesxsrc/bib/dataobj.h | 6 src/bayesxsrc/bib/first.h | 2 src/bayesxsrc/bib/map.cpp | 2 src/bayesxsrc/bib/map.h | 6 src/bayesxsrc/bib/mapobject.h | 8 src/bayesxsrc/bib/model.cpp | 20 - src/bayesxsrc/bib/model.h | 32 +- src/bayesxsrc/bib/remlreg.cpp | 26 - src/bayesxsrc/bib/remlreg.h | 4 src/bayesxsrc/bib/statmat.cpp | 16 - src/bayesxsrc/bib/stepwisereg.cpp | 2 src/bayesxsrc/bib/tlinklst.cpp | 8 src/bayesxsrc/bib/tlinklst.h | 2 src/bayesxsrc/bib/tpremat.cpp | 6 src/bayesxsrc/dag/dagobject.h | 8 src/bayesxsrc/dag/fullcond_dag.h | 2 src/bayesxsrc/dag/fullcond_rj_ia.cpp | 4 src/bayesxsrc/graph/graphobj.cpp | 4 src/bayesxsrc/leyre/nbinomial.cpp | 16 - src/bayesxsrc/leyre/nbinomial.h | 2 src/bayesxsrc/leyre/zip.cpp | 16 - src/bayesxsrc/leyre/zip.h | 2 src/bayesxsrc/mcmc/baseline_reml.cpp | 8 src/bayesxsrc/mcmc/distribution.cpp | 32 +- src/bayesxsrc/mcmc/distribution.h | 30 +- src/bayesxsrc/mcmc/distribution_glasgow.h | 24 - src/bayesxsrc/mcmc/fullcond_merror.cpp | 20 - src/bayesxsrc/mcmc/fullcond_merror.h | 12 src/bayesxsrc/mcmc/fullcond_nonp_gaussian.h | 12 src/bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp | 20 - src/bayesxsrc/mcmc/gaussian_heteroskedastic.cpp | 72 ++-- src/bayesxsrc/mcmc/hrandom.cpp | 2 src/bayesxsrc/mcmc/kriging.cpp | 16 - src/bayesxsrc/mcmc/kriging.h | 12 src/bayesxsrc/mcmc/kriging2.cpp | 22 - src/bayesxsrc/mcmc/kriging2.h | 4 src/bayesxsrc/mcmc/mcmc_const.cpp | 4 src/bayesxsrc/mcmc/mcmc_const_stepwise.cpp | 12 src/bayesxsrc/mcmc/mcmc_const_stepwise.h | 16 - src/bayesxsrc/mcmc/mcmc_nonpbasis.h | 4 src/bayesxsrc/mcmc/mcmc_ridge.cpp | 32 +- src/bayesxsrc/mcmc/mcmc_ridge.h | 6 src/bayesxsrc/mcmc/mcmcsimul.cpp | 40 +- src/bayesxsrc/mcmc/mcmcsimul2.cpp | 168 +++++------ src/bayesxsrc/mcmc/mcmcsimul2.h | 58 ++-- src/bayesxsrc/mcmc/mcmcsimul2_multi.cpp | 42 +- src/bayesxsrc/mcmc/mcmcsimul2_multi.h | 26 - src/bayesxsrc/mcmc/randomeffect.cpp | 2 src/bayesxsrc/mcmc/randomeffect_alt.cpp | 2 src/bayesxsrc/mcmc/randomeffect_alt2.cpp | 2 src/bayesxsrc/mcmc/randomeffect_stepwise.cpp | 6 src/bayesxsrc/mcmc/remlest.cpp | 94 +++--- src/bayesxsrc/mcmc/remlest_multi.cpp | 60 ++-- src/bayesxsrc/mcmc/remlest_multi.h | 4 src/bayesxsrc/mcmc/remlest_multi2.cpp | 132 ++++----- src/bayesxsrc/mcmc/remlest_multi2.h | 2 src/bayesxsrc/mcmc/remlest_multi3.cpp | 130 ++++----- src/bayesxsrc/mcmc/remlest_multi3.h | 4 src/bayesxsrc/mcmc/remlest_multistate.cpp | 2 src/bayesxsrc/mcmc/variance_nonp.cpp | 6 src/bayesxsrc/psplines/IWLS_pspline.cpp | 20 - src/bayesxsrc/psplines/IWLS_pspline.h | 14 src/bayesxsrc/psplines/bsplinemat.cpp | 2 src/bayesxsrc/psplines/fullcond_projection.cpp | 20 - src/bayesxsrc/psplines/fullcond_pspline_gaussian.cpp | 28 - src/bayesxsrc/psplines/fullcond_pspline_gaussian.h | 6 src/bayesxsrc/psplines/fullcond_pspline_stepwise.cpp | 48 +-- src/bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp | 18 - src/bayesxsrc/psplines/fullcond_pspline_surf_gaussian.h | 52 +-- src/bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp | 42 +- src/bayesxsrc/psplines/fullcond_pspline_surf_stepwise.h | 4 src/bayesxsrc/psplines/mcmc_pspline.h | 4 src/bayesxsrc/psplines/spline_basis.cpp | 32 +- src/bayesxsrc/psplines/spline_basis.h | 82 ++--- src/bayesxsrc/psplines/spline_basis_surf.h | 38 +- src/bayesxsrc/structadd/FC.cpp | 4 src/bayesxsrc/structadd/FC_hrandom.h | 2 src/bayesxsrc/structadd/FC_nonp.cpp | 16 - src/bayesxsrc/structadd/FC_variance_pen_vector.cpp | 10 src/bayesxsrc/structadd/design_kriging.cpp | 18 - src/bayesxsrc/structadd/design_kriging.h | 4 src/bayesxsrc/structadd/design_pspline.cpp | 6 src/bayesxsrc/structadd/distr.cpp | 53 +++ src/bayesxsrc/structadd/distr.h | 10 src/bayesxsrc/structadd/distr_categorical.cpp | 6 src/bayesxsrc/structadd/distr_categorical_mult.cpp | 4 102 files changed, 1159 insertions(+), 1097 deletions(-)
Title: Tools for Handling Indices and Proportions in Small Area
Estimation
Description: It allows for mapping proportions and indicators defined on the unit interval. It implements Beta-based small area methods comprising the classical Beta regression models, the Flexible Beta model and Zero and/or One Inflated extensions (Janicki 2020 <doi:10.1080/03610926.2019.1570266>). Such methods, developed within a Bayesian framework through Stan <https://mc-stan.org/>, come equipped with a set of diagnostics and complementary tools, visualizing and exporting functions. A Shiny application with a user-friendly interface can be launched to further simplify the process.
Author: Silvia De Nicolò [aut, cre] ,
Aldo Gardini [aut]
Maintainer: Silvia De Nicolò <silvia.denicolo@unibo.it>
Diff between tipsae versions 0.0.7 dated 2022-08-19 and 0.0.9 dated 2022-11-03
DESCRIPTION | 10 MD5 | 8 R/data.R | 7 build/partial.rdb |binary src/stanExports_global.h | 9955 +++++++++++++++++++++++++++-------------------- 5 files changed, 5874 insertions(+), 4106 deletions(-)
Title: Data on Base Packages for Current and Previous Versions of R
Description: Provides a dataset of functions in all base packages of R versions 1.0.1 onwards.
Author: David Hugh-Jones [aut, cre]
Maintainer: David Hugh-Jones <davidhughjones@gmail.com>
Diff between rcheology versions 4.2.1.0 dated 2022-06-27 and 4.2.2.0 dated 2022-11-03
DESCRIPTION | 6 ++--- MD5 | 14 ++++++------- NEWS.md | 5 ++++ README.md | 32 ++++++++++++++++--------------- data/Rversions.rda |binary data/rcheology.rda |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary 8 files changed, 32 insertions(+), 25 deletions(-)
Title: Constructing and Interacting with Databases of Presentations
Description: Provides methods for constructing and maintaining a database of presentations in R. The presentations are either ones that the user gives or gave or presentations at a particular event or event series. The package also provides a plot method for the interactive mapping of the presentations using 'leaflet' by grouping them according to country, city, year and other presentation attributes. The markers on the map come with popups providing presentation details (title, institution, event, links to materials and events, and so on).
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between semnar versions 0.8.0 dated 2022-10-27 and 0.8.1 dated 2022-11-03
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 10 ++++++++++ R/add_presentation.R | 36 ++++++++++++++---------------------- man/add_presentation.Rd | 12 +++++++++++- 5 files changed, 42 insertions(+), 30 deletions(-)
Title: Creating and Working with Pedigrees and Marker Data
Description: A comprehensive collection of tools for creating,
manipulating and visualising pedigrees and genetic marker data.
Pedigrees can be read from text files or created on the fly with
built-in functions. A range of utilities enable modifications like
adding or removing individuals, breaking loops, and merging pedigrees.
An online tool for creating pedigrees interactively, based on
'pedtools', is available at <https://magnusdv.shinyapps.io/quickped>.
'pedtools' is the hub of the 'ped suite', a collection of packages for
pedigree analysis. A detailed presentation of the 'ped suite' is given
in the book 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedtools versions 1.3.0 dated 2022-06-07 and 2.0.0 dated 2022-11-03
DESCRIPTION | 11 MD5 | 52 +-- NAMESPACE | 11 NEWS.md | 36 ++ R/marker_attach.R | 42 +- R/ped_accessors.R | 18 - R/ped_basic.R | 24 + R/ped_complex.R | 51 +++ R/ped_methods.R | 4 R/ped_plot.R | 721 ++++++++++++++++++++++++++----------------------- R/ped_subgroups.R | 2 R/ped_utils.R | 12 R/plotMethods.R |only R/plot_dag.R |only R/readPed.R | 7 R/writePed.R | 3 build/vignette.rds |binary inst/doc/pedtools.R | 52 +-- inst/doc/pedtools.Rmd | 55 +-- inst/doc/pedtools.html | 413 ++++++++++++++-------------- man/marker_attach.Rd | 27 + man/ped_basic.Rd | 329 +++++++++++----------- man/ped_utils.Rd | 12 man/plot.ped.Rd | 441 ++++++++++++++--------------- man/plotPedList.Rd | 14 man/readPed.Rd | 7 man/relabel.Rd | 17 - vignettes/pedtools.Rmd | 55 +-- 28 files changed, 1298 insertions(+), 1118 deletions(-)
Title: Native R Kernel for the 'Jupyter Notebook'
Description: The R kernel for the 'Jupyter' environment executes R code which the front-end
('Jupyter Notebook' or other front-ends) submits to the kernel via the network.
Author: Thomas Kluyver [aut, cph],
Philipp Angerer [aut, cph, cre]
,
Jan Schulz [aut, cph],
Karthik Ram [aut, cph]
Maintainer: Philipp Angerer <phil.angerer@gmail.com>
Diff between IRkernel versions 1.3 dated 2022-01-03 and 1.3.1 dated 2022-11-03
DESCRIPTION | 8 ++++---- LICENSE | 4 ++-- MD5 | 9 +++++---- R/completion.r | 6 ++++++ inst/kernelspec/logo-svg.svg |only tests/testthat/__pycache__/test_ir.cpython-310.pyc |binary 6 files changed, 17 insertions(+), 10 deletions(-)
Title: Crops an Image to a Circle
Description: Images are cropped to a circle with a transparent background. The function takes a
vector of images, either local or from a link, and circle crops the image. Paths to the
cropped image are returned for plotting with 'ggplot2'.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between cropcircles versions 0.1.0 dated 2022-09-14 and 0.1.1 dated 2022-11-03
cropcircles-0.1.0/cropcircles/R/circle-crop.R |only cropcircles-0.1.1/cropcircles/DESCRIPTION | 6 +++--- cropcircles-0.1.1/cropcircles/MD5 | 16 ++++++++++------ cropcircles-0.1.1/cropcircles/NAMESPACE | 4 ++++ cropcircles-0.1.1/cropcircles/NEWS.md | 6 ++++++ cropcircles-0.1.1/cropcircles/R/crop.R |only cropcircles-0.1.1/cropcircles/README.md | 23 ++++++++++++++++------- cropcircles-0.1.1/cropcircles/inst |only cropcircles-0.1.1/cropcircles/man/circle_crop.Rd | 16 +++++++--------- cropcircles-0.1.1/cropcircles/man/heart_crop.Rd |only cropcircles-0.1.1/cropcircles/man/hex_crop.Rd |only cropcircles-0.1.1/cropcircles/man/square_crop.Rd |only 12 files changed, 46 insertions(+), 25 deletions(-)
Title: Structural Equation Modeling for the Social Relations Model
Description: Provides functionality for structural equation modeling for
the social relations model (Kenny & La Voie, 1984;
<doi:10.1016/S0065-2601(08)60144-6>; Warner, Kenny, & Soto, 1979,
<doi:10.1037/0022-3514.37.10.1742>). Maximum likelihood
estimation (Gill & Swartz, 2001, <doi:10.2307/3316080>;
Nestler, 2018, <doi:10.3102/1076998617741106>) and
least squares estimation is supported (Bond & Malloy, 2018,
<doi:10.1016/B978-0-12-811967-9.00014-X>).
Author: Steffen Nestler [aut], Alexander Robitzsch [aut, cre],
Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between srm versions 0.3-6 dated 2019-12-15 and 0.4-26 dated 2022-11-03
srm-0.3-6/srm/R/SRM_PARTABLE.R |only srm-0.4-26/srm/DESCRIPTION | 10 srm-0.4-26/srm/MD5 | 74 ++-- srm-0.4-26/srm/R/RcppExports.R | 2 srm-0.4-26/srm/R/SRM_COMPUTE_SEM_SIGMA.R | 13 srm-0.4-26/srm/R/SRM_COMPUTE_SEM_SIGMA_COMPUTATION.R |only srm-0.4-26/srm/R/SRM_COMPUTE_SEM_SIGMA_GRADIENT.R | 48 +- srm-0.4-26/srm/R/SRM_COVFUN.R |only srm-0.4-26/srm/R/SRM_INFO_INPUT_DATA.R |only srm-0.4-26/srm/R/SRM_MAKE_DATA_LIST.R | 22 - srm-0.4-26/srm/R/SRM_OPTIMIZE.R | 4 srm-0.4-26/srm/R/SRM_OPTIMIZER_INTERNAL.R | 20 - srm-0.4-26/srm/R/SRM_OPTIMIZER_INTERNAL_LINE_SEARCH.R | 6 srm-0.4-26/srm/R/SRM_PARSER_FUNKTIONEN.R | 241 +++---------- srm-0.4-26/srm/R/SRM_PARSER_LIST.R |only srm-0.4-26/srm/R/SRM_PARTABLE_DYAD.R |only srm-0.4-26/srm/R/SRM_PARTABLE_FIXEDVALUES.R |only srm-0.4-26/srm/R/SRM_PARTABLE_FLAT.R | 332 ------------------ srm-0.4-26/srm/R/SRM_PARTABLE_FLAT_DYAD.R |only srm-0.4-26/srm/R/SRM_PARTABLE_MAKE.R | 11 srm-0.4-26/srm/R/SRM_PARTABLE_MATRIX.R | 5 srm-0.4-26/srm/R/SRM_PARTABLE_ORDER.R |only srm-0.4-26/srm/R/SRM_PARTABLE_PERSON.R |only srm-0.4-26/srm/R/SRM_PREPARE_DATA.R | 10 srm-0.4-26/srm/R/SRM_PRINT_OPTINFOS.R | 15 srm-0.4-26/srm/R/SRM_PRINT_PARAMETERESTIMATES.R | 7 srm-0.4-26/srm/R/SRM_PRINT_SUMMARY_LAYOUT2.R | 24 + srm-0.4-26/srm/R/srm.R | 21 + srm-0.4-26/srm/README.md | 4 srm-0.4-26/srm/build/partial.rdb |binary srm-0.4-26/srm/data/HallmarkKenny.rda |binary srm-0.4-26/srm/data/Kenzer.rda |binary srm-0.4-26/srm/data/Malzer.rda |binary srm-0.4-26/srm/data/Warner.rda |binary srm-0.4-26/srm/data/Zero.rda |binary srm-0.4-26/srm/data/data.back.rda |binary srm-0.4-26/srm/data/data.bm1.rda |binary srm-0.4-26/srm/data/data.bm2.rda |binary srm-0.4-26/srm/data/data.srm01.rda |binary srm-0.4-26/srm/inst/NEWS | 14 srm-0.4-26/srm/man/srm.Rd | 3 srm-0.4-26/srm/src/RcppExports.cpp | 7 srm-0.4-26/srm/src/SRM_RCPP_SRM_ARBSRM.cpp | 22 - 43 files changed, 284 insertions(+), 631 deletions(-)
Title: Random Generation Functionality for the 'spatstat' Family
Description: Functionality for random generation of spatial data in the 'spatstat' family of packages.
Generates random spatial patterns of points according to many simple rules (complete spatial randomness,
Poisson, binomial, random grid, systematic, cell), randomised alteration of patterns
(thinning, random shift, jittering), simulated realisations of random point processes
(simple sequential inhibition, Matern inhibition models, Matern cluster process,
Neyman-Scott cluster processes, log-Gaussian Cox processes, product shot noise cluster processes)
and simulation of Gibbs point processes (Metropolis-Hastings birth-death-shift algorithm,
alternating Gibbs sampler). Also generates random spatial patterns of line segments,
random tessellations, and random images (random noise, random mosaics).
Excludes random generation on a linear network,
which is covered by the separate package 'spatstat.linnet'.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
Kasper Klitgaard Berthelsen [ctb],
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Dominic Schuhmacher [ctb],
Rasmus Plenge Waagepetersen [ctb]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.random versions 3.0-0 dated 2022-11-01 and 3.0-1 dated 2022-11-03
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/packagesizes.txt | 2 +- src/mhsnoop.c | 4 ++-- src/proto.h | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
More information about spatstat.random at CRAN
Permanent link
Title: Compute Expected Shortfall and Value at Risk for Continuous
Distributions
Description: Compute expected shortfall (ES) and Value at Risk (VaR) from a
quantile function, distribution function, random number generator or
probability density function. ES is also known as Conditional Value at
Risk (CVaR). Virtually any continuous distribution can be specified.
The functions are vectorized over the arguments. The computations are
done directly from the definitions, see e.g. Acerbi and Tasche (2002)
<doi:10.1111/1468-0300.00091>. Some support for GARCH models is provided,
as well.
Author: Georgi N. Boshnakov [aut, cre]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between cvar versions 0.4.1 dated 2022-09-19 and 0.5 dated 2022-11-03
DESCRIPTION | 16 +-- MD5 | 34 +++---- NAMESPACE | 10 -- NEWS.md | 23 ++++ R/VaR.R | 209 ++++++++++++++++++++++++++++++-------------- R/cvar-package.R | 11 ++ R/garch.R | 149 ++++++++++++++++++------------- build/partial.rdb |binary inst/doc/Guide_cvar.R | 48 +++++----- inst/doc/Guide_cvar.Rnw | 48 +++++----- inst/doc/Guide_cvar.pdf |binary man/ES.Rd | 51 ++++++++-- man/GarchModel.Rd | 2 man/VaR.Rd | 89 +++++++++++------- man/cvar-package.Rd | 9 + tests/testthat/test-VaR.R | 56 +++++------ tests/testthat/test-garch.R | 42 ++++---- vignettes/Guide_cvar.Rnw | 48 +++++----- 18 files changed, 512 insertions(+), 333 deletions(-)
Title: Create Interactive Timeline Visualizations in R
Description: Create rich and fully interactive timeline visualizations.
Timelines can be included in Shiny apps or R markdown documents.
'timevis' includes an extensive API to manipulate a timeline after creation,
and supports getting data out of the visualization into R. Based on the
'vis.js' Timeline JavaScript library.
Author: Dean Attali [aut, cre] ,
Almende B.V. [aut, cph]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between timevis versions 2.0.0 dated 2021-12-20 and 2.1.0 dated 2022-11-03
timevis-2.0.0/timevis/build |only timevis-2.0.0/timevis/inst/doc |only timevis-2.0.0/timevis/inst/example/www/flags |only timevis-2.0.0/timevis/inst/example/www/help.md |only timevis-2.0.0/timevis/vignettes |only timevis-2.1.0/timevis/DESCRIPTION | 30 +-- timevis-2.1.0/timevis/LICENSE | 2 timevis-2.1.0/timevis/MD5 | 81 +++----- timevis-2.1.0/timevis/NAMESPACE | 2 timevis-2.1.0/timevis/NEWS.md | 7 timevis-2.1.0/timevis/R/api.R | 98 ++++++++-- timevis-2.1.0/timevis/R/timevis.R | 70 ++++--- timevis-2.1.0/timevis/R/utils.R | 8 timevis-2.1.0/timevis/README.md | 57 +++-- timevis-2.1.0/timevis/inst/example/sampleData.R | 61 +++--- timevis-2.1.0/timevis/inst/example/server.R | 12 + timevis-2.1.0/timevis/inst/example/ui.R | 34 ++- timevis-2.1.0/timevis/inst/example/www/style.css | 1 timevis-2.1.0/timevis/inst/htmlwidgets/lib/vis-7.4.9/vis-timeline-graph2d.min.css | 2 timevis-2.1.0/timevis/inst/htmlwidgets/lib/vis-7.4.9/vis-timeline-graph2d.min.js | 70 +++---- timevis-2.1.0/timevis/inst/htmlwidgets/timevis.js | 19 + timevis-2.1.0/timevis/inst/img/groups.png |binary timevis-2.1.0/timevis/inst/img/nestedgroups.png |only timevis-2.1.0/timevis/man/addCustomTime.Rd | 3 timevis-2.1.0/timevis/man/addItem.Rd | 3 timevis-2.1.0/timevis/man/addItems.Rd | 3 timevis-2.1.0/timevis/man/centerItem.Rd | 3 timevis-2.1.0/timevis/man/centerTime.Rd | 3 timevis-2.1.0/timevis/man/removeCustomTime.Rd | 3 timevis-2.1.0/timevis/man/removeItem.Rd | 3 timevis-2.1.0/timevis/man/setCurrentTime.Rd | 3 timevis-2.1.0/timevis/man/setCustomTime.Rd | 3 timevis-2.1.0/timevis/man/setGroups.Rd | 4 timevis-2.1.0/timevis/man/setItems.Rd | 3 timevis-2.1.0/timevis/man/setOptions.Rd | 3 timevis-2.1.0/timevis/man/setSelection.Rd | 3 timevis-2.1.0/timevis/man/setWindow.Rd | 3 timevis-2.1.0/timevis/man/timevis.Rd | 70 ++++--- timevis-2.1.0/timevis/man/zoom.Rd |only timevis-2.1.0/timevis/tests/testthat/setup_helpers.R |only timevis-2.1.0/timevis/tests/testthat/test-dataframeToD3.R | 39 +++ 41 files changed, 457 insertions(+), 249 deletions(-)
Title: Statistical Hypothesis Testing Toolbox
Description: We provide a collection of statistical hypothesis testing procedures ranging from classical to modern methods for non-trivial settings such as high-dimensional scenario. For the general treatment of statistical hypothesis testing, see the book by Lehmann and Romano (2005) <doi:10.1007/0-387-27605-X>.
Author: Kyoungjae Lee [aut],
Lizhen Lin [aut],
Kisung You [aut, cre]
Maintainer: Kisung You <kisungyou@outlook.com>
Diff between SHT versions 0.1.7 dated 2022-06-06 and 0.1.8 dated 2022-11-03
SHT-0.1.7/SHT/R/cov1.2012Fisher.R |only SHT-0.1.7/SHT/R/cov1.2015WL.R |only SHT-0.1.7/SHT/R/cov1.mxPBF.R |only SHT-0.1.7/SHT/R/cov2.2012LC.R |only SHT-0.1.7/SHT/R/cov2.2013CLX.R |only SHT-0.1.7/SHT/R/cov2.2015WL.R |only SHT-0.1.7/SHT/R/cov2.mxPBF.R |only SHT-0.1.7/SHT/R/covk.2001Schott.R |only SHT-0.1.7/SHT/R/covk.2007Schott.R |only SHT-0.1.7/SHT/R/eqdist.2014BG.R |only SHT-0.1.7/SHT/R/mean1.1931Hotelling.R |only SHT-0.1.7/SHT/R/mean1.1958Dempster.R |only SHT-0.1.7/SHT/R/mean1.1996BS.R |only SHT-0.1.7/SHT/R/mean1.2008SD.R |only SHT-0.1.7/SHT/R/mean1.ttest.R |only SHT-0.1.7/SHT/R/mean2.1931Hotelling.R |only SHT-0.1.7/SHT/R/mean2.1958Dempster.R |only SHT-0.1.7/SHT/R/mean2.1965Yao.R |only SHT-0.1.7/SHT/R/mean2.1980Johansen.R |only SHT-0.1.7/SHT/R/mean2.1986NVM.R |only SHT-0.1.7/SHT/R/mean2.1996BS.R |only SHT-0.1.7/SHT/R/mean2.2004KY.R |only SHT-0.1.7/SHT/R/mean2.2008SD.R |only SHT-0.1.7/SHT/R/mean2.2011LJW.R |only SHT-0.1.7/SHT/R/mean2.2014CLX.R |only SHT-0.1.7/SHT/R/mean2.2014Thulin.R |only SHT-0.1.7/SHT/R/mean2.mxPBF.R |only SHT-0.1.7/SHT/R/mean2.ttest.R |only SHT-0.1.7/SHT/R/meank.2007Schott.R |only SHT-0.1.7/SHT/R/meank.2009ZX.R |only SHT-0.1.7/SHT/R/meank.2019CPH.R |only SHT-0.1.7/SHT/R/meank.anova.R |only SHT-0.1.7/SHT/R/mvar1.1998AS.R |only SHT-0.1.7/SHT/R/mvar1.LRT.R |only SHT-0.1.7/SHT/R/mvar2.1930PN.R |only SHT-0.1.7/SHT/R/mvar2.1976PL.R |only SHT-0.1.7/SHT/R/mvar2.1982Muirhead.R |only SHT-0.1.7/SHT/R/mvar2.2012ZXC.R |only SHT-0.1.7/SHT/R/mvar2.LRT.R |only SHT-0.1.7/SHT/R/norm.1965SW.R |only SHT-0.1.7/SHT/R/norm.1972SF.R |only SHT-0.1.7/SHT/R/norm.1980JB.R |only SHT-0.1.7/SHT/R/norm.1996AJB.R |only SHT-0.1.7/SHT/R/norm.2008RJB.R |only SHT-0.1.7/SHT/R/sim1.2017Liu.R |only SHT-0.1.7/SHT/R/sim1.LRT.R |only SHT-0.1.7/SHT/R/sim2.2018HN.R |only SHT-0.1.7/SHT/R/unif.2017YMi.R |only SHT-0.1.7/SHT/R/unif.2017YMq.R |only SHT-0.1.7/SHT/R/utility.usek1d.R |only SHT-0.1.7/SHT/R/utility.useknd.R |only SHT-0.1.7/SHT/R/var1.chisq.R |only SHT-0.1.7/SHT/R/var2.F.R |only SHT-0.1.7/SHT/R/vark.1937Bartlett.R |only SHT-0.1.7/SHT/R/vark.1960Levene.R |only SHT-0.1.7/SHT/R/vark.1974BF.R |only SHT-0.1.8/SHT/DESCRIPTION | 10 - SHT-0.1.8/SHT/MD5 | 237 +++++++++++++++---------------- SHT-0.1.8/SHT/NAMESPACE | 2 SHT-0.1.8/SHT/NEWS.md | 4 SHT-0.1.8/SHT/R/aux_checkers.R | 32 ++++ SHT-0.1.8/SHT/R/aux_simplex.R |only SHT-0.1.8/SHT/R/cov1_2012Fisher.R |only SHT-0.1.8/SHT/R/cov1_2015WL.R |only SHT-0.1.8/SHT/R/cov1_mxPBF.R |only SHT-0.1.8/SHT/R/cov2_2012LC.R |only SHT-0.1.8/SHT/R/cov2_2013CLX.R |only SHT-0.1.8/SHT/R/cov2_2015WL.R |only SHT-0.1.8/SHT/R/cov2_mxPBF.R |only SHT-0.1.8/SHT/R/covk_2001Schott.R |only SHT-0.1.8/SHT/R/covk_2007Schott.R |only SHT-0.1.8/SHT/R/eqdist_2014BG.R |only SHT-0.1.8/SHT/R/mean1_1931Hotelling.R |only SHT-0.1.8/SHT/R/mean1_1958Dempster.R |only SHT-0.1.8/SHT/R/mean1_1996BS.R |only SHT-0.1.8/SHT/R/mean1_2008SD.R |only SHT-0.1.8/SHT/R/mean1_ttest.R |only SHT-0.1.8/SHT/R/mean2_1931Hotelling.R |only SHT-0.1.8/SHT/R/mean2_1958Dempster.R |only SHT-0.1.8/SHT/R/mean2_1965Yao.R |only SHT-0.1.8/SHT/R/mean2_1980Johansen.R |only SHT-0.1.8/SHT/R/mean2_1986NVM.R |only SHT-0.1.8/SHT/R/mean2_1996BS.R |only SHT-0.1.8/SHT/R/mean2_2004KY.R |only SHT-0.1.8/SHT/R/mean2_2008SD.R |only SHT-0.1.8/SHT/R/mean2_2011LJW.R |only SHT-0.1.8/SHT/R/mean2_2014CLX.R |only SHT-0.1.8/SHT/R/mean2_2014Thulin.R |only SHT-0.1.8/SHT/R/mean2_mxPBF.R |only SHT-0.1.8/SHT/R/mean2_ttest.R |only SHT-0.1.8/SHT/R/meank_2007Schott.R |only SHT-0.1.8/SHT/R/meank_2009ZX.R |only SHT-0.1.8/SHT/R/meank_2019CPH.R |only SHT-0.1.8/SHT/R/meank_anova.R |only SHT-0.1.8/SHT/R/mvar1_1998AS.R |only SHT-0.1.8/SHT/R/mvar1_LRT.R |only SHT-0.1.8/SHT/R/mvar2_1930PN.R |only SHT-0.1.8/SHT/R/mvar2_1976PL.R |only SHT-0.1.8/SHT/R/mvar2_1982Muirhead.R |only SHT-0.1.8/SHT/R/mvar2_2012ZXC.R |only SHT-0.1.8/SHT/R/mvar2_LRT.R |only SHT-0.1.8/SHT/R/norm_1965SW.R |only SHT-0.1.8/SHT/R/norm_1972SF.R |only SHT-0.1.8/SHT/R/norm_1980JB.R |only SHT-0.1.8/SHT/R/norm_1996AJB.R |only SHT-0.1.8/SHT/R/norm_2008RJB.R |only SHT-0.1.8/SHT/R/package-SHT.R | 2 SHT-0.1.8/SHT/R/sim1_2017Liu.R |only SHT-0.1.8/SHT/R/sim1_LRT.R |only SHT-0.1.8/SHT/R/sim2_2018HN.R |only SHT-0.1.8/SHT/R/simplex_unif.R |only SHT-0.1.8/SHT/R/unif_2017YMi.R |only SHT-0.1.8/SHT/R/unif_2017YMq.R |only SHT-0.1.8/SHT/R/utility_usek1d.R |only SHT-0.1.8/SHT/R/utility_useknd.R |only SHT-0.1.8/SHT/R/var1_chisq.R |only SHT-0.1.8/SHT/R/var2_F.R |only SHT-0.1.8/SHT/R/vark_1937Bartlett.R |only SHT-0.1.8/SHT/R/vark_1960Levene.R |only SHT-0.1.8/SHT/R/vark_1974BF.R |only SHT-0.1.8/SHT/build/partial.rdb |binary SHT-0.1.8/SHT/man/cov1.2012Fisher.Rd | 2 SHT-0.1.8/SHT/man/cov1.2015WL.Rd | 2 SHT-0.1.8/SHT/man/cov2.2012LC.Rd | 2 SHT-0.1.8/SHT/man/cov2.2013CLX.Rd | 2 SHT-0.1.8/SHT/man/cov2.2015WL.Rd | 2 SHT-0.1.8/SHT/man/cov2.mxPBF.Rd | 3 SHT-0.1.8/SHT/man/covk.2001Schott.Rd | 2 SHT-0.1.8/SHT/man/covk.2007Schott.Rd | 2 SHT-0.1.8/SHT/man/eqdist.2014BG.Rd | 2 SHT-0.1.8/SHT/man/mean1.1931Hotelling.Rd | 2 SHT-0.1.8/SHT/man/mean1.1958Dempster.Rd | 2 SHT-0.1.8/SHT/man/mean1.1996BS.Rd | 2 SHT-0.1.8/SHT/man/mean1.2008SD.Rd | 2 SHT-0.1.8/SHT/man/mean1.ttest.Rd | 2 SHT-0.1.8/SHT/man/mean2.1931Hotelling.Rd | 2 SHT-0.1.8/SHT/man/mean2.1958Dempster.Rd | 2 SHT-0.1.8/SHT/man/mean2.1965Yao.Rd | 2 SHT-0.1.8/SHT/man/mean2.1980Johansen.Rd | 2 SHT-0.1.8/SHT/man/mean2.1986NVM.Rd | 2 SHT-0.1.8/SHT/man/mean2.1996BS.Rd | 2 SHT-0.1.8/SHT/man/mean2.2004KY.Rd | 2 SHT-0.1.8/SHT/man/mean2.2008SD.Rd | 2 SHT-0.1.8/SHT/man/mean2.2011LJW.Rd | 2 SHT-0.1.8/SHT/man/mean2.2014CLX.Rd | 2 SHT-0.1.8/SHT/man/mean2.2014Thulin.Rd | 2 SHT-0.1.8/SHT/man/mean2.mxPBF.Rd | 2 SHT-0.1.8/SHT/man/mean2.ttest.Rd | 2 SHT-0.1.8/SHT/man/meank.2007Schott.Rd | 2 SHT-0.1.8/SHT/man/meank.2009ZX.Rd | 2 SHT-0.1.8/SHT/man/meank.2019CPH.Rd | 2 SHT-0.1.8/SHT/man/meank.anova.Rd | 2 SHT-0.1.8/SHT/man/mvar1.1998AS.Rd | 2 SHT-0.1.8/SHT/man/mvar1.LRT.Rd | 2 SHT-0.1.8/SHT/man/mvar2.1930PN.Rd | 2 SHT-0.1.8/SHT/man/mvar2.1976PL.Rd | 2 SHT-0.1.8/SHT/man/mvar2.1982Muirhead.Rd | 2 SHT-0.1.8/SHT/man/mvar2.2012ZXC.Rd | 2 SHT-0.1.8/SHT/man/mvar2.LRT.Rd | 2 SHT-0.1.8/SHT/man/norm.1965SW.Rd | 2 SHT-0.1.8/SHT/man/norm.1972SF.Rd | 2 SHT-0.1.8/SHT/man/norm.1980JB.Rd | 2 SHT-0.1.8/SHT/man/norm.1996AJB.Rd | 2 SHT-0.1.8/SHT/man/norm.2008RJB.Rd | 2 SHT-0.1.8/SHT/man/sim1.2017Liu.Rd | 2 SHT-0.1.8/SHT/man/sim1.LRT.Rd | 2 SHT-0.1.8/SHT/man/sim2.2018HN.Rd | 2 SHT-0.1.8/SHT/man/simplex.uniform.Rd |only SHT-0.1.8/SHT/man/unif.2017YMi.Rd | 2 SHT-0.1.8/SHT/man/unif.2017YMq.Rd | 2 SHT-0.1.8/SHT/man/usek1d.Rd | 2 SHT-0.1.8/SHT/man/useknd.Rd | 2 SHT-0.1.8/SHT/man/var1.chisq.Rd | 2 SHT-0.1.8/SHT/man/var2.F.Rd | 2 SHT-0.1.8/SHT/man/vark.1937Bartlett.Rd | 2 SHT-0.1.8/SHT/man/vark.1960Levene.Rd | 2 SHT-0.1.8/SHT/man/vark.1974BF.Rd | 2 177 files changed, 220 insertions(+), 178 deletions(-)
More information about scoringfunctions at CRAN
Permanent link
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our 'JSS'
paper (2016, <doi:10.18637/jss.v071.i02>. A sufficiently recent version of
'Protocol Buffers' library is required; currently version 3.3.0 from 2017
is the stated minimum.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.19 dated 2022-05-06 and 0.4.20 dated 2022-11-03
ChangeLog | 17 DESCRIPTION | 9 MD5 | 24 build/vignette.rds |binary configure | 3083 ++++++++++++++++++++++++---------------- configure.ac | 2 inst/NEWS.Rd | 12 inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary src/Makevars.in | 8 src/Makevars.win | 4 src/init.c | 4 13 files changed, 1944 insertions(+), 1219 deletions(-)
Title: Extract Remote Sensing Vegetation Phenology
Description: The merits of 'TIMESAT' and 'phenopix' are adopted. Besides, a simple and
growing season dividing method and a practical snow elimination method
based on Whittaker were proposed. 7 curve fitting methods and 4 phenology
extraction methods were provided. Parameters boundary are considered for
every curve fitting methods according to their ecological meaning.
And 'optimx' is used to select best optimization method for different
curve fitting methods.
Reference:
Kong, D., (2020). R package: A state-of-the-art Vegetation Phenology extraction
package, phenofit version 0.3.1, <doi:10.5281/zenodo.5150204>;
Kong, D., Zhang, Y., Wang, D., Chen, J., & Gu, X. (2020). Photoperiod Explains
the Asynchronization Between Vegetation Carbon Phenology and Vegetation Greenness
Phenology. Journal of Geophysical Research: Biogeosciences, 125(8), e2020JG005636.
<doi:10.1029/2020JG005636>;
Kong, D., Zhang, Y., Gu, X., & Wang, D. (2019). A robust method for reconstructing
global MODIS EVI ti [...truncated...]
Author: Dongdong Kong [aut, cre],
Mingzhong Xiao [aut],
Yongqiang Zhang [aut],
Xihui Gu [aut],
Jianjian Cui [aut]
Maintainer: Dongdong Kong <kongdd.sysu@gmail.com>
Diff between phenofit versions 0.3.2 dated 2021-10-15 and 0.3.6 dated 2022-11-03
phenofit-0.3.2/phenofit/R/PhenoExtractMeth.R |only phenofit-0.3.2/phenofit/R/backval.R |only phenofit-0.3.2/phenofit/R/data_MOD13A1.R |only phenofit-0.3.2/phenofit/R/global.R |only phenofit-0.3.2/phenofit/R/init_param.R |only phenofit-0.3.2/phenofit/R/julia.R |only phenofit-0.3.2/phenofit/R/options.R |only phenofit-0.3.2/phenofit/R/season_RoughFitting.R |only phenofit-0.3.2/phenofit/R/season_find.R |only phenofit-0.3.2/phenofit/inst/examples/ex-FitDL.R |only phenofit-0.3.2/phenofit/inst/examples/ex-PhenoExtract.R |only phenofit-0.3.2/phenofit/inst/examples/ex-check_input.R |only phenofit-0.3.2/phenofit/man/PhenoExtractMeth.Rd |only phenofit-0.3.2/phenofit/man/backval.Rd |only phenofit-0.3.2/phenofit/man/julia_setup.Rd |only phenofit-0.3.2/phenofit/man/opt_nlminb_julia.Rd |only phenofit-0.3.2/phenofit/man/opt_season.Rd |only phenofit-0.3.6/phenofit/DESCRIPTION | 14 phenofit-0.3.6/phenofit/MD5 | 243 ++--- phenofit-0.3.6/phenofit/NAMESPACE | 55 - phenofit-0.3.6/phenofit/NEWS.md | 50 + phenofit-0.3.6/phenofit/R/D.R | 339 +++---- phenofit-0.3.6/phenofit/R/I_optim.R | 38 phenofit-0.3.6/phenofit/R/PhenoDeriv.R |only phenofit-0.3.6/phenofit/R/PhenoGu.R |only phenofit-0.3.6/phenofit/R/PhenoKl.R |only phenofit-0.3.6/phenofit/R/PhenoTrs.R |only phenofit-0.3.6/phenofit/R/RcppExports.R | 4 phenofit-0.3.6/phenofit/R/S3_fFITs.R | 117 +- phenofit-0.3.6/phenofit/R/check_input.R | 55 - phenofit-0.3.6/phenofit/R/curvefit.R | 184 ++- phenofit-0.3.6/phenofit/R/curvefits.R | 115 +- phenofit-0.3.6/phenofit/R/curvefits_LocalModel.R |only phenofit-0.3.6/phenofit/R/deprecated_season.R | 30 phenofit-0.3.6/phenofit/R/doubleLogistics-init_param.R |only phenofit-0.3.6/phenofit/R/doubleLogistics_R.R | 42 phenofit-0.3.6/phenofit/R/doubleLogistics_cpp.R | 25 phenofit-0.3.6/phenofit/R/doubleLogistics_fitting.R | 154 --- phenofit-0.3.6/phenofit/R/f_goal.R | 64 - phenofit-0.3.6/phenofit/R/findpeaks.R | 117 +- phenofit-0.3.6/phenofit/R/get_GOF.R | 65 + phenofit-0.3.6/phenofit/R/get_fitting.R | 27 phenofit-0.3.6/phenofit/R/get_param.R | 28 phenofit-0.3.6/phenofit/R/get_pheno.R | 153 ++- phenofit-0.3.6/phenofit/R/global_data.R |only phenofit-0.3.6/phenofit/R/global_options.R |only phenofit-0.3.6/phenofit/R/global_vars.R |only phenofit-0.3.6/phenofit/R/julia |only phenofit-0.3.6/phenofit/R/opt_FUN.R | 3 phenofit-0.3.6/phenofit/R/opt_nlminb.R | 55 - phenofit-0.3.6/phenofit/R/optim_pheno.R | 323 +++--- phenofit-0.3.6/phenofit/R/phenofit-package.R | 6 phenofit-0.3.6/phenofit/R/plot_curvefits.R | 2 phenofit-0.3.6/phenofit/R/process_phenofit.R | 14 phenofit-0.3.6/phenofit/R/process_season.R | 18 phenofit-0.3.6/phenofit/R/qcFUN.R | 110 +- phenofit-0.3.6/phenofit/R/roughFit.R |only phenofit-0.3.6/phenofit/R/season_input.R |only phenofit-0.3.6/phenofit/R/season_mov.R | 208 +++- phenofit-0.3.6/phenofit/R/season_tools.R | 67 - phenofit-0.3.6/phenofit/R/smooth_wSG.R | 38 phenofit-0.3.6/phenofit/R/smooth_wWHIT.R | 30 phenofit-0.3.6/phenofit/R/smooth_wWHIT_lambda.R | 106 +- phenofit-0.3.6/phenofit/R/tools.R | 275 +++-- phenofit-0.3.6/phenofit/R/tools_plyr.R |only phenofit-0.3.6/phenofit/R/wFUN.R | 26 phenofit-0.3.6/phenofit/README.md | 70 + phenofit-0.3.6/phenofit/build/partial.rdb |only phenofit-0.3.6/phenofit/build/vignette.rds |binary phenofit-0.3.6/phenofit/data/input_single.rda |only phenofit-0.3.6/phenofit/inst/doc/phenofit-procedures.R | 4 phenofit-0.3.6/phenofit/inst/doc/phenofit-procedures.Rmd | 4 phenofit-0.3.6/phenofit/inst/doc/phenofit-procedures.html | 383 ++++++-- phenofit-0.3.6/phenofit/inst/doc/phenofit_CA-NS6.R | 2 phenofit-0.3.6/phenofit/inst/doc/phenofit_CA-NS6.Rmd | 2 phenofit-0.3.6/phenofit/inst/doc/phenofit_CA-NS6.html | 467 +++++++--- phenofit-0.3.6/phenofit/inst/examples/ex-curvefit.R | 6 phenofit-0.3.6/phenofit/inst/examples/ex-curvefits.R | 12 phenofit-0.3.6/phenofit/inst/examples/ex-get_fitting_param_GOF.R | 9 phenofit-0.3.6/phenofit/inst/examples/phenofit_MOD13A1.R | 2 phenofit-0.3.6/phenofit/man/CA_NS6.Rd | 4 phenofit-0.3.6/phenofit/man/D.Rd | 36 phenofit-0.3.6/phenofit/man/FitDL.Rd | 38 phenofit-0.3.6/phenofit/man/I_optim.Rd | 7 phenofit-0.3.6/phenofit/man/MOD13A1.Rd | 2 phenofit-0.3.6/phenofit/man/PhenoDeriv.Rd |only phenofit-0.3.6/phenofit/man/PhenoGu.Rd |only phenofit-0.3.6/phenofit/man/PhenoKl.Rd |only phenofit-0.3.6/phenofit/man/PhenoTrs.Rd |only phenofit-0.3.6/phenofit/man/brks2rfit.Rd |only phenofit-0.3.6/phenofit/man/check_input.Rd | 16 phenofit-0.3.6/phenofit/man/curvefit.Rd | 36 phenofit-0.3.6/phenofit/man/curvefit0.Rd |only phenofit-0.3.6/phenofit/man/curvefits.Rd | 80 - phenofit-0.3.6/phenofit/man/curvefits_LocalModel.Rd |only phenofit-0.3.6/phenofit/man/cutoff.Rd |only phenofit-0.3.6/phenofit/man/fFITs.Rd | 21 phenofit-0.3.6/phenofit/man/f_goal.Rd | 3 phenofit-0.3.6/phenofit/man/f_goal2.Rd | 9 phenofit-0.3.6/phenofit/man/find_season.peaks.Rd | 2 phenofit-0.3.6/phenofit/man/findpeaks.Rd | 34 phenofit-0.3.6/phenofit/man/get_GOF.Rd | 25 phenofit-0.3.6/phenofit/man/get_fitting.Rd | 20 phenofit-0.3.6/phenofit/man/get_param.Rd | 28 phenofit-0.3.6/phenofit/man/get_pheno.Rd | 63 - phenofit-0.3.6/phenofit/man/init_param.Rd | 42 phenofit-0.3.6/phenofit/man/input_single.Rd |only phenofit-0.3.6/phenofit/man/lambda_vcurve.Rd | 24 phenofit-0.3.6/phenofit/man/logistics.Rd | 44 phenofit-0.3.6/phenofit/man/optim_pheno.Rd | 33 phenofit-0.3.6/phenofit/man/plot_curvefits.Rd | 14 phenofit-0.3.6/phenofit/man/plot_input.Rd | 2 phenofit-0.3.6/phenofit/man/plot_phenofit.Rd | 2 phenofit-0.3.6/phenofit/man/process_phenofit.Rd | 4 phenofit-0.3.6/phenofit/man/process_season.Rd | 4 phenofit-0.3.6/phenofit/man/qcFUN.Rd | 25 phenofit-0.3.6/phenofit/man/qc_levels.Rd | 2 phenofit-0.3.6/phenofit/man/qc_sentinel2.Rd |only phenofit-0.3.6/phenofit/man/rcpp_season_filter.Rd | 6 phenofit-0.3.6/phenofit/man/removeClosedExtreme.Rd | 4 phenofit-0.3.6/phenofit/man/roughFit.Rd |only phenofit-0.3.6/phenofit/man/season.Rd | 150 --- phenofit-0.3.6/phenofit/man/season_input.Rd |only phenofit-0.3.6/phenofit/man/season_mov.Rd | 136 ++ phenofit-0.3.6/phenofit/man/set_options.Rd | 170 +++ phenofit-0.3.6/phenofit/man/smooth_wSG.Rd | 2 phenofit-0.3.6/phenofit/man/smooth_wWHIT.Rd | 26 phenofit-0.3.6/phenofit/man/tidy_pheno.Rd | 6 phenofit-0.3.6/phenofit/man/v_curve.Rd | 36 phenofit-0.3.6/phenofit/src/RcppExports.cpp | 8 phenofit-0.3.6/phenofit/src/f_goal.cpp | 38 phenofit-0.3.6/phenofit/tests/testthat/test-PhenoExtract.R | 130 +- phenofit-0.3.6/phenofit/tests/testthat/test-curvefit.R | 54 - phenofit-0.3.6/phenofit/tests/testthat/test-curvefits.R | 2 phenofit-0.3.6/phenofit/tests/testthat/test-curvefits_LocalModel.R |only phenofit-0.3.6/phenofit/tests/testthat/test-fFITs.R |only phenofit-0.3.6/phenofit/tests/testthat/test-find_season.R | 27 phenofit-0.3.6/phenofit/tests/testthat/test-findpeaks.R | 17 phenofit-0.3.6/phenofit/tests/testthat/test-qcFUN.R | 20 phenofit-0.3.6/phenofit/tests/testthat/test-season_input.R |only phenofit-0.3.6/phenofit/tests/testthat/test-season_mov.R | 6 phenofit-0.3.6/phenofit/tests/testthat/test-set_options.R |only phenofit-0.3.6/phenofit/tests/testthat/test-v_curve.R | 2 phenofit-0.3.6/phenofit/vignettes/phenofit-procedures.Rmd | 4 phenofit-0.3.6/phenofit/vignettes/phenofit_CA-NS6.Rmd | 2 145 files changed, 3313 insertions(+), 2314 deletions(-)
Title: Easily Install and Load the 'mlr3' Package Family
Description: The 'mlr3' package family is a set of packages for
machine-learning purposes built in a modular fashion. This wrapper
package is aimed to simplify the installation and loading of the core
'mlr3' packages. Get more information about the 'mlr3' project at
<https://mlr3book.mlr-org.com/>.
Author: Michel Lang [cre, aut] ,
Patrick Schratz [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3verse versions 0.2.5 dated 2022-05-18 and 0.2.6 dated 2022-11-03
DESCRIPTION | 12 ++++++------ MD5 | 13 +++++++------ NAMESPACE | 6 ++++++ NEWS.md | 4 ++++ R/reexport_mlr3misc.R |only R/reexports_mlr3tuning.R | 4 ++++ man/mlr3verse-package.Rd | 2 +- man/reexports.Rd | 23 ++++++++++++++--------- 8 files changed, 42 insertions(+), 22 deletions(-)
Title: Bayesian Synthetic Likelihood
Description: Bayesian synthetic likelihood (BSL, Price et al. (2018) <doi:10.1080/10618600.2017.1302882>)
is an alternative to standard, non-parametric approximate Bayesian
computation (ABC). BSL assumes a multivariate normal distribution
for the summary statistic likelihood and it is suitable when the
distribution of the model summary statistics is sufficiently regular.
This package provides a Metropolis Hastings Markov chain Monte Carlo
implementation of four methods (BSL, uBSL, semiBSL and BSLmisspec) and two
shrinkage estimators (graphical lasso and Warton's estimator).
uBSL (Price et al. (2018) <doi:10.1080/10618600.2017.1302882>) uses
an unbiased estimator to the normal density. A semi-parametric version
of BSL (semiBSL, An et al. (2018) <arXiv:1809.05800>) is more robust
to non-normal summary statistics. BSLmisspec (Frazier et al. 2019
<arXiv:1904.04551>) estimates the Gaussian synthetic likelihood whilst
acknowledging that there may be incompatibility between the mod [...truncated...]
Author: Ziwen An [aut] ,
Leah F. South [aut, cre] ,
Christopher C. Drovandi [aut]
Maintainer: Leah F. South <l1.south@qut.edu.au>
Diff between BSL versions 3.2.4 dated 2022-02-22 and 3.2.5 dated 2022-11-03
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- build/partial.rdb |binary src/simulate_toad.cpp | 4 ++-- 4 files changed, 10 insertions(+), 10 deletions(-)
Title: Secure in-Browser Storage for 'Shiny' Inputs and Variables
Description: Store persistent and synchronized data from 'Shiny' inputs within the browser in a secure format. Refresh 'Shiny' applications and preserve user-inputs over multiple sessions. A database-like storage format is implemented using 'Dexie.js' <https://dexie.org>, a minimal wrapper for 'IndexedDB'.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between shinyStorePlus versions 0.6 dated 2022-08-14 and 0.7 dated 2022-11-03
DESCRIPTION | 8 +++---- MD5 | 28 +++++++++++++-------------- NEWS.md | 19 ++++++++++++++++-- R/clearStore.R | 9 ++------ R/setup.R | 2 - README.md | 21 ++++++++++++++++---- inst/doc/introduction_to_shinystoreplus.html | 4 +-- inst/doc/using_shinystoreplus.Rmd | 8 ++++--- inst/doc/using_shinystoreplus.html | 18 +++++++++-------- inst/example/server.R | 3 ++ inst/example/ui.R | 1 inst/scripts/shinystoreplus.js | 3 +- man/clearStore.Rd | 4 ++- man/setupStorage.Rd | 2 - vignettes/using_shinystoreplus.Rmd | 8 ++++--- 15 files changed, 88 insertions(+), 50 deletions(-)
More information about shinyStorePlus at CRAN
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