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Title: Identifying Important Areas from Animal Tracking Data
Description: Functions for preparing and analyzing animal tracking data,
with the intention of identifying areas which are potentially important at
the population level and therefore of conservation interest. Areas identified
using this package may be checked against global or regionally-defined criteria,
such as those set by the Key Biodiversity Area program. The method
published herein is described in full in Beal et al. 2021 <doi:10.1111/2041-210X.13713>.
Author: Martin Beal [aut, cre] ,
Steffen Oppel [aut] ,
Maria Dias [aut] ,
Mark Miller [ctb],
Phillip Taylor [ctb],
Virginia Morera-Pujol [ctb] ,
Elizabeth Pearmain [ctb] ,
Jonathan Handley [ctb] ,
Ben Lascelles [ctb]
Maintainer: Martin Beal <martinbeal88@gmail.com>
Diff between track2KBA versions 1.0.3 dated 2022-10-10 and 1.0.4 dated 2022-11-18
DESCRIPTION | 6 +- MD5 | 12 ++-- R/estSpaceUse.r | 32 ++++++---- inst/doc/track2kba_workflow.html | 111 ++++++++++++++++++------------------- inst/tinytest/test_estSpaceUse.R | 8 ++ inst/tinytest/test_projectTracks.R | 21 ++++--- man/estSpaceUse.Rd | 30 ++++++---- 7 files changed, 122 insertions(+), 98 deletions(-)
Title: Importing and Analyzing 'Twitter' Data Collected with 'Twitter
Archiving Google Sheets'
Description: The 'tidytags' package coordinates the simplicity of collecting tweets
over time with a 'Twitter Archiving Google Sheet' (TAGS; <https://tags.hawksey.info/>)
and the utility of the 'rtweet' package (<https://docs.ropensci.org/rtweet/>)
for processing and preparing additional 'Twitter' metadata. 'tidytags' also
introduces functions developed to facilitate systematic yet flexible analyses
of data from 'Twitter'.
Author: K. Bret Staudt Willet [aut, cre]
,
Joshua M. Rosenberg [aut] ,
Lluis Revilla Sancho [rev] ,
Marion Louveaux [rev]
Maintainer: K. Bret Staudt Willet <bret.staudtwillet@fsu.edu>
Diff between tidytags versions 1.0.3 dated 2022-10-18 and 1.1.0 dated 2022-11-18
tidytags-1.0.3/tidytags/tests/testthat/setup-vcr.R |only tidytags-1.1.0/tidytags/DESCRIPTION | 8 tidytags-1.1.0/tidytags/MD5 | 42 tidytags-1.1.0/tidytags/NEWS.md | 12 tidytags-1.1.0/tidytags/R/analyze-network.R | 1 tidytags-1.1.0/tidytags/R/get-upstream-tweets.R | 4 tidytags-1.1.0/tidytags/R/setup-functions.R | 1 tidytags-1.1.0/tidytags/README.md | 262 - tidytags-1.1.0/tidytags/inst/doc/setup.html | 111 tidytags-1.1.0/tidytags/inst/doc/tidytags-with-conf-hashtags.html | 111 tidytags-1.1.0/tidytags/tests/fixtures/different_tweet_types.yml | 748 ++-- tidytags-1.1.0/tidytags/tests/fixtures/lookup_many.yml | 176 - tidytags-1.1.0/tidytags/tests/fixtures/metadata_from_ids.yml | 125 tidytags-1.1.0/tidytags/tests/fixtures/metadata_from_rtweet.yml | 141 tidytags-1.1.0/tidytags/tests/fixtures/metadata_from_urls.yml | 125 tidytags-1.1.0/tidytags/tests/fixtures/sample_tags.yml | 16 tidytags-1.1.0/tidytags/tests/fixtures/tweet_ids.yml | 540 --- tidytags-1.1.0/tidytags/tests/fixtures/upstream_tweets.yml | 1500 ++++------ tidytags-1.1.0/tidytags/tests/fixtures/upstream_tweets_empty.yml | 80 tidytags-1.1.0/tidytags/tests/fixtures/url_domains.yml | 68 tidytags-1.1.0/tidytags/tests/fixtures/users_info.yml | 867 ++--- tidytags-1.1.0/tidytags/tests/testthat/helper-vcr.R |only tidytags-1.1.0/tidytags/tests/testthat/test-3-pull_tweet_data.R | 3 23 files changed, 2210 insertions(+), 2731 deletions(-)
Title: Tools for Single Cell Genomics
Description: A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, Stuart T, Butler A, et al (2019) <doi:10.1016/j.cell.2019.05.031>, and Hao, Hao, et al (2020) <doi:10.1101/2020.10.12.335331> for more details.
Author: Andrew Butler [ctb] ,
Saket Choudhary [ctb] ,
Charlotte Darby [ctb] ,
Jeff Farrell [ctb],
Christoph Hafemeister [ctb] ,
Yuhan Hao [ctb] ,
Austin Hartman [ctb] ,
Paul Hoffman [aut, cre] ,
Jaison Jain [ctb] ,
Madeline Kowalski [ctb] ,
Efthymia Papalexi [...truncated...]
Maintainer: Paul Hoffman <seurat@nygenome.org>
Diff between Seurat versions 4.2.1 dated 2022-11-07 and 4.3.0 dated 2022-11-18
DESCRIPTION | 27 MD5 | 49 NAMESPACE | 42 NEWS.md | 10 R/convenience.R | 202 +++ R/differential_expression.R | 11 R/preprocessing.R | 1619 +++++++++++++++++++++++++- R/reexports.R | 18 R/utilities.R | 106 + R/visualization.R | 1297 ++++++++++++++++++++ R/zzz.R | 37 README.md | 2 build/partial.rdb |binary man/DiscretePalette.Rd | 8 man/ImageDimPlot.Rd |only man/ImageFeaturePlot.Rd |only man/PolyFeaturePlot.Rd | 3 man/ReadAkoya.Rd |only man/ReadNanostring.Rd |only man/ReadVitessce.Rd |only man/ReadVizgen.Rd |only man/ReadXenium.Rd |only man/SingleImagePlot.Rd |only man/SpatialPlot.Rd | 2 man/VizDimLoadings.Rd | 4 man/fortify-Spatial.Rd |only man/reexports.Rd | 4 man/roxygen |only tests/testthat/test_differential_expression.R | 28 29 files changed, 3361 insertions(+), 108 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the mlr3 ecosystem. It
features highly configurable search spaces via the paradox package and
finds optimal hyperparameter configurations for any mlr3 learner.
mlr3tuning works with several optimization algorithms e.g. Random
Search, Iterated Racing, Bayesian Optimization (in mlr3mbo) and
Hyperband (in mlr3hyperband). Moreover, it can automatically optimize
learners and estimate the performance of optimized models with nested
resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 0.16.0 dated 2022-11-08 and 0.17.0 dated 2022-11-18
mlr3tuning-0.16.0/mlr3tuning/man/mlr_sugar.Rd |only mlr3tuning-0.17.0/mlr3tuning/DESCRIPTION | 61 -- mlr3tuning-0.17.0/mlr3tuning/MD5 | 95 +-- mlr3tuning-0.17.0/mlr3tuning/NEWS.md | 6 mlr3tuning-0.17.0/mlr3tuning/R/ArchiveTuning.R | 42 - mlr3tuning-0.17.0/mlr3tuning/R/AutoTuner.R | 118 +++- mlr3tuning-0.17.0/mlr3tuning/R/ObjectiveTuning.R | 8 mlr3tuning-0.17.0/mlr3tuning/R/Tuner.R | 31 - mlr3tuning-0.17.0/mlr3tuning/R/TunerCmaes.R | 22 mlr3tuning-0.17.0/mlr3tuning/R/TunerDesignPoints.R | 32 - mlr3tuning-0.17.0/mlr3tuning/R/TunerGenSA.R | 3 mlr3tuning-0.17.0/mlr3tuning/R/TunerGridSearch.R | 11 mlr3tuning-0.17.0/mlr3tuning/R/TunerIrace.R | 10 mlr3tuning-0.17.0/mlr3tuning/R/TunerNLoptr.R | 23 mlr3tuning-0.17.0/mlr3tuning/R/TunerRandomSearch.R | 2 mlr3tuning-0.17.0/mlr3tuning/R/TuningInstanceMulticrit.R | 27 mlr3tuning-0.17.0/mlr3tuning/R/TuningInstanceSingleCrit.R | 40 - mlr3tuning-0.17.0/mlr3tuning/R/extract_inner_tuning_archives.R | 9 mlr3tuning-0.17.0/mlr3tuning/R/extract_inner_tuning_results.R | 9 mlr3tuning-0.17.0/mlr3tuning/R/helper.R | 12 mlr3tuning-0.17.0/mlr3tuning/R/mlr_callbacks.R | 2 mlr3tuning-0.17.0/mlr3tuning/R/sugar.R | 8 mlr3tuning-0.17.0/mlr3tuning/R/tune.R | 21 mlr3tuning-0.17.0/mlr3tuning/R/tune_nested.R | 10 mlr3tuning-0.17.0/mlr3tuning/README.md | 271 ++-------- mlr3tuning-0.17.0/mlr3tuning/inst/WORDLIST | 1 mlr3tuning-0.17.0/mlr3tuning/man/ArchiveTuning.Rd | 41 - mlr3tuning-0.17.0/mlr3tuning/man/AutoTuner.Rd | 96 ++- mlr3tuning-0.17.0/mlr3tuning/man/ObjectiveTuning.Rd | 5 mlr3tuning-0.17.0/mlr3tuning/man/Tuner.Rd | 16 mlr3tuning-0.17.0/mlr3tuning/man/TuningInstanceMultiCrit.Rd | 47 + mlr3tuning-0.17.0/mlr3tuning/man/TuningInstanceSingleCrit.Rd | 40 - mlr3tuning-0.17.0/mlr3tuning/man/auto_tuner.Rd | 10 mlr3tuning-0.17.0/mlr3tuning/man/extract_inner_tuning_archives.Rd | 9 mlr3tuning-0.17.0/mlr3tuning/man/extract_inner_tuning_results.Rd | 9 mlr3tuning-0.17.0/mlr3tuning/man/mlr3tuning-package.Rd | 4 mlr3tuning-0.17.0/mlr3tuning/man/mlr3tuning.early_stopping.Rd | 2 mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_cmaes.Rd | 33 - mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_design_points.Rd | 45 + mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_gensa.Rd | 30 - mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_grid_search.Rd | 35 - mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_irace.Rd | 22 mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_nloptr.Rd | 37 - mlr3tuning-0.17.0/mlr3tuning/man/mlr_tuners_random_search.Rd | 28 - mlr3tuning-0.17.0/mlr3tuning/man/ti.Rd | 37 - mlr3tuning-0.17.0/mlr3tuning/man/tnr.Rd |only mlr3tuning-0.17.0/mlr3tuning/man/tune.Rd | 27 mlr3tuning-0.17.0/mlr3tuning/man/tune_nested.Rd | 10 mlr3tuning-0.17.0/mlr3tuning/tests/testthat/test_AutoTuner.R | 77 ++ mlr3tuning-0.17.0/mlr3tuning/tests/testthat/test_ti.R |only 50 files changed, 867 insertions(+), 667 deletions(-)
Title: Formulations of the International Association for the Properties
of Water and Steam
Description: Implementation of some of the formulations for the thermodynamic
and transport properties released by the International Association for
the Properties of Water and Steam (IAPWS). More specifically, the
releases R1-76(2014), R5-85(1994), R6-95(2018), R7-97(2012), R8-97,
R9-97, R10-06(2009), R11-07(2019), R12-08, R15-11, R16-17(2018),
R17-20 and R18-21 at <http://iapws.org>.
Author: Jonathan Debove [aut, cre]
Maintainer: Jonathan Debove <jondebove@gmail.com>
Diff between iapws versions 1.0 dated 2022-10-03 and 1.1 dated 2022-11-18
iapws-1.0/iapws/src/cond.c |only iapws-1.0/iapws/src/cond.h |only iapws-1.0/iapws/src/dielec.c |only iapws-1.0/iapws/src/dielec.h |only iapws-1.0/iapws/src/melt08.c |only iapws-1.0/iapws/src/melt08.h |only iapws-1.0/iapws/src/visc.c |only iapws-1.0/iapws/src/visc.h |only iapws-1.1/iapws/DESCRIPTION | 13 iapws-1.1/iapws/MD5 | 84 ++-- iapws-1.1/iapws/NAMESPACE | 17 iapws-1.1/iapws/R/checkArgs.R | 20 iapws-1.1/iapws/R/const.R |only iapws-1.1/iapws/R/elec.R |only iapws-1.1/iapws/R/heavy17.R |only iapws-1.1/iapws/inst/doc/iapws.pdf |binary iapws-1.1/iapws/man/const.Rd |only iapws-1.1/iapws/man/elec.Rd |only iapws-1.1/iapws/man/heavy17.Rd |only iapws-1.1/iapws/man/heavy17_sat.Rd |only iapws-1.1/iapws/man/heavy17_state.Rd |only iapws-1.1/iapws/man/iapws95.Rd | 34 - iapws-1.1/iapws/man/iapws95_sat.Rd | 8 iapws-1.1/iapws/man/iapws95_state.Rd | 4 iapws-1.1/iapws/man/ice06.Rd | 5 iapws-1.1/iapws/man/if97.Rd | 6 iapws-1.1/iapws/man/if97_state.Rd | 2 iapws-1.1/iapws/man/surf.Rd |only iapws-1.1/iapws/src/Makevars | 1 iapws-1.1/iapws/src/R_interface.c | 420 +++++--------------- iapws-1.1/iapws/src/R_interface.h | 172 ++++++-- iapws-1.1/iapws/src/coef.h |only iapws-1.1/iapws/src/elec.c |only iapws-1.1/iapws/src/elec.h |only iapws-1.1/iapws/src/heavy17.c |only iapws-1.1/iapws/src/heavy17.h |only iapws-1.1/iapws/src/iapws.c | 129 +++++- iapws-1.1/iapws/src/iapws.h | 80 ++- iapws-1.1/iapws/src/iapws95.c | 457 +++++++--------------- iapws-1.1/iapws/src/iapws95.h | 16 iapws-1.1/iapws/src/ice06.c | 33 - iapws-1.1/iapws/src/ice06.h | 2 iapws-1.1/iapws/src/if97.c | 725 ++++++++++------------------------- iapws-1.1/iapws/src/if97.h | 15 iapws-1.1/iapws/src/melt.c |only iapws-1.1/iapws/src/melt.h |only iapws-1.1/iapws/src/nroot.c | 50 +- iapws-1.1/iapws/src/nroot.h | 27 - iapws-1.1/iapws/src/phi.c |only iapws-1.1/iapws/src/phi.h |only iapws-1.1/iapws/src/pow.h | 20 iapws-1.1/iapws/src/sat86.c | 85 ++-- iapws-1.1/iapws/src/sat86.h | 1 iapws-1.1/iapws/src/surf.c | 24 - iapws-1.1/iapws/src/surf.h | 3 iapws-1.1/iapws/src/trans.c |only iapws-1.1/iapws/src/trans.h |only 57 files changed, 1093 insertions(+), 1360 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to LaTeX and html code,
and recoding variables.
Author: Frank E Harrell Jr [aut, cre] ,
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 4.7-1 dated 2022-08-15 and 4.7-2 dated 2022-11-18
DESCRIPTION | 12 ++++++------ MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 2 +- NEWS | 17 ++++++++++++++++- R/Merge.r | 2 ++ R/Misc.s | 39 +++++++++++++++++++++++---------------- R/describe.s | 2 +- R/latex.s | 2 +- R/mChoice.s | 49 ++++++++++++++++++++++++++++++++++++++----------- R/transcan.s | 12 +++++++++--- man/all.is.numeric.Rd | 9 +++++++-- man/getRs.Rd | 5 +---- man/hidingTOC.Rd | 3 ++- man/latex.Rd | 6 +++--- man/mChoice.Rd | 35 ++++++++++++++++++++++++++++++----- man/popower.Rd | 2 +- src/ranksort.c | 15 +++------------ 17 files changed, 160 insertions(+), 84 deletions(-)
Title: Handling HL7 FHIR Resources in R
Description: Useful tools for conveniently downloading FHIR resources in xml format
and converting them to R data.frames. The package uses FHIR-search to download bundles
from a FHIR server, provides functions to save and read xml-files containing such bundles
and allows flattening the bundles to data.frames using XPath expressions.
Author: Thomas Peschel [aut],
Julia Palm [aut, cre] ,
Jens Przybilla [aut],
Frank Meineke [aut]
Maintainer: Julia Palm <julia.palm@med.uni-jena.de>
Diff between fhircrackr versions 2.0.0 dated 2022-07-14 and 2.1.0 dated 2022-11-18
fhircrackr-2.0.0/fhircrackr/vignettes/MyProject |only fhircrackr-2.1.0/fhircrackr/DESCRIPTION | 10 fhircrackr-2.1.0/fhircrackr/MD5 | 66 fhircrackr-2.1.0/fhircrackr/NEWS.md | 16 fhircrackr-2.1.0/fhircrackr/R/build_resources.R | 24 fhircrackr-2.1.0/fhircrackr/R/download_resources.R | 106 + fhircrackr-2.1.0/fhircrackr/R/fhir_bundle.R | 6 fhircrackr-2.1.0/fhircrackr/R/sample_resources.R | 107 + fhircrackr-2.1.0/fhircrackr/build/vignette.rds |binary fhircrackr-2.1.0/fhircrackr/inst/CITATION | 10 fhircrackr-2.1.0/fhircrackr/inst/doc/downloadResources.Rmd | 4 fhircrackr-2.1.0/fhircrackr/inst/doc/downloadResources.html | 797 ++++++++-- fhircrackr-2.1.0/fhircrackr/inst/doc/fhircrackr_intro.html | 635 ++++++- fhircrackr-2.1.0/fhircrackr/inst/doc/flattenResources.html | 713 +++++++- fhircrackr-2.1.0/fhircrackr/inst/doc/recreateResources.html | 511 +++++- fhircrackr-2.1.0/fhircrackr/man/fhir_capability_statement.Rd | 4 fhircrackr-2.1.0/fhircrackr/man/fhir_count_resource.Rd | 13 fhircrackr-2.1.0/fhircrackr/man/fhir_current_request.Rd | 10 fhircrackr-2.1.0/fhircrackr/man/fhir_get_resource_ids.Rd | 13 fhircrackr-2.1.0/fhircrackr/man/fhir_get_resources_by_ids.Rd | 12 fhircrackr-2.1.0/fhircrackr/man/fhir_load.Rd | 5 fhircrackr-2.1.0/fhircrackr/man/fhir_next_bundle_url.Rd | 10 fhircrackr-2.1.0/fhircrackr/man/fhir_post-methods.Rd | 7 fhircrackr-2.1.0/fhircrackr/man/fhir_put.Rd | 4 fhircrackr-2.1.0/fhircrackr/man/fhir_sample_resources.Rd | 12 fhircrackr-2.1.0/fhircrackr/man/fhir_sample_resources_by_ids.Rd | 12 fhircrackr-2.1.0/fhircrackr/man/fhir_search.Rd | 30 fhircrackr-2.1.0/fhircrackr/tests/testthat/_snaps/fhir_crack.md | 60 fhircrackr-2.1.0/fhircrackr/vignettes/downloadResources.Rmd | 4 29 files changed, 2577 insertions(+), 624 deletions(-)
Title: Educational Assessment Tools for Replication Methods
Description: Replication methods to compute some basic statistic operations (means, standard deviations,
frequency tables, percentiles and generalized linear models) in complex survey designs comprising multiple
imputed variables and/or a clustered sampling structure which both deserve special procedures at least in
estimating standard errors. See the package documentation for a more detailed description along with references.
Author: Sebastian Weirich [aut, cre],
Martin Hecht [aut],
Karoline Sachse [aut],
Benjamin Becker [aut]
Maintainer: Sebastian Weirich <sebastian.weirich@iqb.hu-berlin.de>
Diff between eatRep versions 0.14.5 dated 2022-07-08 and 0.14.6 dated 2022-11-18
eatRep-0.14.5/eatRep/man/auxiliaryFunctions.Rd |only eatRep-0.14.6/eatRep/DESCRIPTION | 11 eatRep-0.14.6/eatRep/MD5 | 37 - eatRep-0.14.6/eatRep/NAMESPACE | 8 eatRep-0.14.6/eatRep/NEWS.md | 9 eatRep-0.14.6/eatRep/R/1_compareDiffs.r | 2 eatRep-0.14.6/eatRep/R/2_doTrends.r | 5 eatRep-0.14.6/eatRep/R/bifie.r | 180 ++++-- eatRep-0.14.6/eatRep/R/jk2.R | 409 ++++++++------- eatRep-0.14.6/eatRep/R/report.r | 28 - eatRep-0.14.6/eatRep/data/lsa.rda |binary eatRep-0.14.6/eatRep/man/eatRep-package.rd | 4 eatRep-0.14.6/eatRep/man/lsa.rd | 8 eatRep-0.14.6/eatRep/man/repGlm.Rd | 5 eatRep-0.14.6/eatRep/man/repLmer.Rd |only eatRep-0.14.6/eatRep/man/repMean.Rd | 2 eatRep-0.14.6/eatRep/man/report.Rd | 2 eatRep-0.14.6/eatRep/tests/testthat/test_SE_correction.R | 2 eatRep-0.14.6/eatRep/tests/testthat/test_WEC.R |only eatRep-0.14.6/eatRep/tests/testthat/test_jk2_glm.R | 7 eatRep-0.14.6/eatRep/tests/testthat/test_jk2_lmer.r |only eatRep-0.14.6/eatRep/tests/testthat/test_jk2_quantile.r |only 22 files changed, 438 insertions(+), 281 deletions(-)
Title: ARDL, ECM and Bounds-Test for Cointegration
Description: Creates complex autoregressive distributed lag (ARDL) models and
constructs the underlying unrestricted and restricted error correction
model (ECM) automatically, just by providing the order. It also performs
the bounds-test for cointegration as described in Pesaran et al. (2001)
<doi:10.1002/jae.616> and provides the multipliers and the cointegrating
equation. The validity and the accuracy of this package have been verified
by successfully replicating the results of Pesaran et al. (2001) in
Natsiopoulos and Tzeremes (2022) <doi:10.1002/jae.2919>.
Author: Kleanthis Natsiopoulos [aut, cre]
,
Nickolaos Tzeremes [aut]
Maintainer: Kleanthis Natsiopoulos <klnatsio@gmail.com>
Diff between ARDL versions 0.2.0 dated 2022-06-29 and 0.2.1 dated 2022-11-18
DESCRIPTION | 12 MD5 | 43 + NEWS.md | 49 ++ R/ardl-package.R | 13 R/auto_ardl.R | 10 R/bounds_test.R | 1226 +++++++++++++++++++++++++-------------------------- R/coint_eq.R | 12 R/data.R | 36 + R/helper-functions.R |only R/multipliers.R | 596 ++++++++++++------------ README.md | 30 - build/partial.rdb |binary data/PSS2001.rda |only inst/CITATION | 13 man/ARDL-package.Rd | 1 man/PSS2001.Rd |only man/bounds_f_test.Rd | 11 man/bounds_t_test.Rd | 11 man/coint_eq.Rd | 2 man/denmark.Rd | 2 tests |only 21 files changed, 1096 insertions(+), 971 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.6.0 dated 2022-11-18 and 1.6.1 dated 2022-11-18
DESCRIPTION | 6 +- MD5 | 144 ++++++++++++++++++++++++------------------------ NEWS.md | 7 ++ R/gg_area.R | 7 -- R/gg_bar.R | 7 -- R/gg_bin2d.R | 7 -- R/gg_blank.R | 43 ++++++++++---- R/gg_boxplot.R | 7 -- R/gg_col.R | 7 -- R/gg_crossbar.R | 7 -- R/gg_density.R | 7 -- R/gg_errorbar.R | 7 -- R/gg_freqpoly.R | 7 -- R/gg_function.R | 7 -- R/gg_hex.R | 7 -- R/gg_histogram.R | 7 -- R/gg_jitter.R | 7 -- R/gg_label.R | 7 -- R/gg_line.R | 7 -- R/gg_linerange.R | 7 -- R/gg_path.R | 7 -- R/gg_point.R | 7 -- R/gg_pointrange.R | 7 -- R/gg_polygon.R | 7 -- R/gg_qq.R | 7 -- R/gg_raster.R | 82 ++++++++++++++------------- R/gg_rect.R | 7 -- R/gg_ribbon.R | 7 -- R/gg_segment.R | 7 -- R/gg_sf.R | 38 ++++++++---- R/gg_smooth.R | 7 -- R/gg_step.R | 7 -- R/gg_text.R | 7 -- R/gg_theme.R | 13 ---- R/gg_tile.R | 7 -- R/gg_violin.R | 7 -- inst/doc/ggblanket.R | 3 + inst/doc/ggblanket.Rmd | 3 + inst/doc/ggblanket.html | 15 +++-- man/gg_area.Rd | 2 man/gg_bar.Rd | 2 man/gg_bin2d.Rd | 2 man/gg_blank.Rd | 5 + man/gg_boxplot.Rd | 2 man/gg_col.Rd | 2 man/gg_crossbar.Rd | 2 man/gg_density.Rd | 2 man/gg_errorbar.Rd | 2 man/gg_freqpoly.Rd | 2 man/gg_function.Rd | 2 man/gg_hex.Rd | 2 man/gg_histogram.Rd | 2 man/gg_jitter.Rd | 2 man/gg_label.Rd | 2 man/gg_line.Rd | 2 man/gg_linerange.Rd | 2 man/gg_path.Rd | 2 man/gg_point.Rd | 2 man/gg_pointrange.Rd | 2 man/gg_polygon.Rd | 2 man/gg_qq.Rd | 2 man/gg_raster.Rd | 13 ++-- man/gg_rect.Rd | 2 man/gg_ribbon.Rd | 2 man/gg_segment.Rd | 2 man/gg_sf.Rd | 5 + man/gg_smooth.Rd | 2 man/gg_step.Rd | 2 man/gg_text.Rd | 2 man/gg_theme.Rd | 5 - man/gg_tile.Rd | 2 man/gg_violin.Rd | 2 vignettes/ggblanket.Rmd | 3 + 73 files changed, 275 insertions(+), 371 deletions(-)
Title: Extreme Value Analysis
Description: General functions for performing extreme value analysis. In particular, allows for inclusion of covariates into the parameters of the extreme-value distributions, as well as estimation through MLE, L-moments, generalized (penalized) MLE (GMLE), as well as Bayes. Inference methods include parametric normal approximation, profile-likelihood, Bayes, and bootstrapping. Some bivariate functionality and dependence checking (e.g., auto-tail dependence function plot, extremal index estimation) is also included. For a tutorial, see Gilleland and Katz (2016) <doi: 10.18637/jss.v072.i08> and for bootstrapping, please see Gilleland (2020) <doi: 10.1175/JTECH-D-20-0070.1>.
Author: Eric Gilleland
Maintainer: Eric Gilleland <ericg@ucar.edu>
Diff between extRemes versions 2.1-2 dated 2022-05-03 and 2.1-3 dated 2022-11-18
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NAMESPACE | 1 + R/BayesFactor.R | 16 ++++++++-------- R/dependence.R | 2 +- R/fitdiagnostics.R | 29 ++++++++++++++++++++++++----- R/fitfuns.R | 31 +++++++++++++++++++++++-------- R/misc.R | 6 +++--- R/quantiles.R | 4 ++-- R/thresh.R | 4 ++-- R/xbooter.R | 4 ++-- build/partial.rdb |binary man/extRemes-internal.Rd | 1 + man/hwmi.Rd | 1 - man/hwmid.Rd | 1 - 15 files changed, 86 insertions(+), 52 deletions(-)
Title: Text Analysis with Rules and Dictionaries for Inferring
Sentiment
Description: Measure text's sentiment with dictionaries and simple rules covering
negations and modifiers. User-supplied dictionaries are supported, including
Unicode emojis and multi-word tokens, so this package can also be used to
study constructs beyond sentiment.
Author: Christopher Belanger [aut, cre, cph]
Maintainer: Christopher Belanger <christopher.a.belanger@gmail.com>
Diff between tardis versions 0.1.3 dated 2022-09-30 and 0.1.4 dated 2022-11-18
tardis-0.1.3/tardis/build/partial.rdb |only tardis-0.1.3/tardis/data/dict_emoji.rda |only tardis-0.1.3/tardis/data/dict_liu.rda |only tardis-0.1.3/tardis/data/dict_vader.rda |only tardis-0.1.3/tardis/data/dict_vader_modifiers.rda |only tardis-0.1.3/tardis/data/dict_vader_negations.rda |only tardis-0.1.3/tardis/man/dict_emoji.Rd |only tardis-0.1.3/tardis/man/dict_liu.Rd |only tardis-0.1.3/tardis/man/dict_vader.Rd |only tardis-0.1.3/tardis/man/dict_vader_modifiers.Rd |only tardis-0.1.3/tardis/man/dict_vader_negations.Rd |only tardis-0.1.3/tardis/man/figures/README-unnamed-chunk-5-1.png |only tardis-0.1.4/tardis/DESCRIPTION | 11 tardis-0.1.4/tardis/MD5 | 53 - tardis-0.1.4/tardis/NAMESPACE | 1 tardis-0.1.4/tardis/NEWS.md | 18 tardis-0.1.4/tardis/R/cpp11.R | 4 tardis-0.1.4/tardis/R/data.R | 47 - tardis-0.1.4/tardis/R/functions.R | 316 +++----- tardis-0.1.4/tardis/R/tardis.R | 404 ++++++++--- tardis-0.1.4/tardis/README.md | 137 +-- tardis-0.1.4/tardis/build/vignette.rds |only tardis-0.1.4/tardis/data/dict_modifiers.rda |only tardis-0.1.4/tardis/data/dict_negations.rda |only tardis-0.1.4/tardis/data/dict_tardis_sentiment.rda |binary tardis-0.1.4/tardis/inst |only tardis-0.1.4/tardis/man/dict_modifiers.Rd |only tardis-0.1.4/tardis/man/dict_negations.Rd |only tardis-0.1.4/tardis/man/dict_tardis_sentiment.Rd | 3 tardis-0.1.4/tardis/man/figures/README-benchmark_plot-1.png |only tardis-0.1.4/tardis/man/pipe.Rd | 2 tardis-0.1.4/tardis/man/tardis.Rd | 58 + tardis-0.1.4/tardis/man/tardis_multidict.Rd |only tardis-0.1.4/tardis/src/code.cpp | 19 tardis-0.1.4/tardis/src/cpp11.cpp | 8 tardis-0.1.4/tardis/tests/testthat/test-tardis.R | 217 +++++ tardis-0.1.4/tardis/vignettes |only 37 files changed, 874 insertions(+), 424 deletions(-)
Title: R2s for Regression Models
Description: Three methods to calculate R2 for models with correlated errors,
including Phylogenetic GLS, Phylogenetic Logistic Regression, Linear Mixed
Models (LMMs), and Generalized Linear Mixed Models (GLMMs). See details in
Ives 2018 <doi:10.1093/sysbio/syy060>.
Author: Anthony Ives [aut, cre],
Daijiang Li [ctb]
Maintainer: Anthony Ives <arives@wisc.edu>
Diff between rr2 versions 1.0.2 dated 2019-05-09 and 1.1.0 dated 2022-11-18
rr2-1.0.2/rr2/man/R2.lik.Rd |only rr2-1.0.2/rr2/man/R2.pred.Rd |only rr2-1.0.2/rr2/man/R2.resid.Rd |only rr2-1.1.0/rr2/DESCRIPTION | 14 rr2-1.1.0/rr2/MD5 | 34 +- rr2-1.1.0/rr2/NAMESPACE | 7 rr2-1.1.0/rr2/NEWS.md | 10 rr2-1.1.0/rr2/R/r2.R | 284 +++++++++++------- rr2-1.1.0/rr2/R/r2_lik.R | 318 +++++++++++--------- rr2-1.1.0/rr2/R/r2_pred.R | 497 ++++++++++++++++++++------------ rr2-1.1.0/rr2/R/r2_resid.R | 414 +++++++++++++++++--------- rr2-1.1.0/rr2/R/utils.R | 3 rr2-1.1.0/rr2/README.md | 132 ++++---- rr2-1.1.0/rr2/man/R2.Rd | 237 ++++++++++----- rr2-1.1.0/rr2/man/R2_lik.Rd |only rr2-1.1.0/rr2/man/R2_pred.Rd |only rr2-1.1.0/rr2/man/R2_resid.Rd |only rr2-1.1.0/rr2/man/binaryPGLMM.Rd | 13 rr2-1.1.0/rr2/man/partialR2adj.Rd | 8 rr2-1.1.0/rr2/man/rr2.Rd | 1 rr2-1.1.0/rr2/tests/testthat/test_r2s.R | 44 ++ 21 files changed, 1284 insertions(+), 732 deletions(-)
Title: R Interface to 'IGN' Web Services
Description: Interface to easily access the National Institute of
Geographic and Forestry Information open-source data from Geoservice
website for any area of interest in France via WFS (shapefile) and WMS
(raster) web services
<https://geoservices.ign.fr/services-web-experts>.
Author: Paul Carteron [aut, cre]
Maintainer: Paul Carteron <carteronpaul@gmail.com>
Diff between happign versions 0.1.6 dated 2022-09-16 and 0.1.7 dated 2022-11-18
happign-0.1.6/happign/R/get_apicarto_plu.R |only happign-0.1.6/happign/R/utils.R |only happign-0.1.6/happign/inst/doc/Getting_started.R |only happign-0.1.6/happign/man/get_apicarto_plu.Rd |only happign-0.1.6/happign/man/shp_to_geojson.Rd |only happign-0.1.6/happign/tests/testthat/get_apicarto_gpu geom/apicarto.ign.fr/api/gpu/zone-urba-04fd99.R |only happign-0.1.6/happign/tests/testthat/get_apicarto_plu geom |only happign-0.1.6/happign/tests/testthat/get_apicarto_plu partition |only happign-0.1.6/happign/tests/testthat/get_layers_metada_wfs/wxs.ign.fr/altimetrie/geoportail/wfs-98a337.xml |only happign-0.1.6/happign/tests/testthat/get_layers_metada_wms/wxs.ign.fr/ortho/geoportail/r/wms-e4543b.R |only happign-0.1.6/happign/tests/testthat/get_wms_info works/wxs.ign.fr/ortho/geoportail/r/wms-f7cc3b.R |only happign-0.1.6/happign/tests/testthat/on_attach |only happign-0.1.6/happign/tests/testthat/on_attach_error |only happign-0.1.6/happign/tests/testthat/req_function perform request |only happign-0.1.6/happign/tests/testthat/test-utils.R |only happign-0.1.7/happign/DESCRIPTION | 13 happign-0.1.7/happign/MD5 | 133 ++-- happign-0.1.7/happign/NAMESPACE | 18 happign-0.1.7/happign/NEWS.md | 20 happign-0.1.7/happign/R/check_input.R |only happign-0.1.7/happign/R/data.R | 2 happign-0.1.7/happign/R/get_apicarto_cadastre.R | 6 happign-0.1.7/happign/R/get_apicarto_commune.R | 84 +- happign-0.1.7/happign/R/get_apicarto_gpu.R |only happign-0.1.7/happign/R/get_last_news.R |only happign-0.1.7/happign/R/get_layers_metadata.R | 65 -- happign-0.1.7/happign/R/get_raw_lidar.R | 43 - happign-0.1.7/happign/R/get_wfs.R | 155 ++--- happign-0.1.7/happign/R/get_wms_info.R | 29 happign-0.1.7/happign/R/get_wms_raster.R | 291 +++++----- happign-0.1.7/happign/R/init.R | 54 - happign-0.1.7/happign/README.md | 32 - happign-0.1.7/happign/build/vignette.rds |binary happign-0.1.7/happign/inst/doc/Getting_started.Rmd | 115 ++- happign-0.1.7/happign/inst/doc/Getting_started.html | 258 ++++---- happign-0.1.7/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.Rmd | 2 happign-0.1.7/happign/inst/doc/SCAN_25_SCAN_100_SCAN_OACI.html | 137 ++-- happign-0.1.7/happign/man/cog_2022.Rd | 2 happign-0.1.7/happign/man/get_apicarto_commune.Rd | 20 happign-0.1.7/happign/man/get_apicarto_gpu.Rd |only happign-0.1.7/happign/man/get_last_news.Rd |only happign-0.1.7/happign/man/get_layers_metadata.Rd | 23 happign-0.1.7/happign/man/get_raw_lidar.Rd | 21 happign-0.1.7/happign/man/get_wfs.Rd | 165 ++--- happign-0.1.7/happign/man/get_wms_info.Rd | 14 happign-0.1.7/happign/man/get_wms_raster.Rd | 75 +- happign-0.1.7/happign/tests/testthat/are_queryable works/wxs.ign.fr/administratif/geoportail/r/wms-21553a.R | 16 happign-0.1.7/happign/tests/testthat/get_api_cadastre char/apicarto.ign.fr/api/cadastre/parcelle-8c2e01.R | 4 happign-0.1.7/happign/tests/testthat/get_api_cadastre char/apicarto.ign.fr/api/cadastre/parcelle-915579.R | 4 happign-0.1.7/happign/tests/testthat/get_apicarto_cadastre sf/apicarto.ign.fr/api/cadastre/parcelle-0c0796.R | 18 happign-0.1.7/happign/tests/testthat/get_apicarto_cadastre sf/apicarto.ign.fr/api/cadastre/parcelle-c741cd.R | 18 happign-0.1.7/happign/tests/testthat/get_apicarto_cadastre sfc/apicarto.ign.fr/api/cadastre/parcelle-0c0796.R | 18 happign-0.1.7/happign/tests/testthat/get_apicarto_cadastre sfc/apicarto.ign.fr/api/cadastre/parcelle-c741cd.R | 18 happign-0.1.7/happign/tests/testthat/get_apicarto_commune_1 |only happign-0.1.7/happign/tests/testthat/get_apicarto_commune_2 |only happign-0.1.7/happign/tests/testthat/get_apicarto_commune_4 |only happign-0.1.7/happign/tests/testthat/get_apicarto_gpu geom/apicarto.ign.fr/api/gpu/zone-urba-41ed1c.R |only happign-0.1.7/happign/tests/testthat/get_apicarto_gpu partition/apicarto.ign.fr/api/gpu/zone-urba-8f23f7.R | 18 happign-0.1.7/happign/tests/testthat/get_last_news |only happign-0.1.7/happign/tests/testthat/get_layers_metada_wfs/wxs.ign.fr/altimetrie/geoportail/wfs-ae6f0d.xml |only happign-0.1.7/happign/tests/testthat/get_layers_metada_wms/wxs.ign.fr/ortho/geoportail/r/wms-d98bfb.R |only happign-0.1.7/happign/tests/testthat/get_wfs simple request/wxs.ign.fr/cartovecto/geoportail/wfs-82489c.R | 18 happign-0.1.7/happign/tests/testthat/get_wms_info return error/wxs.ign.fr/ortho/geoportail/r/wms-21553a.R | 16 happign-0.1.7/happign/tests/testthat/get_wms_info works/wxs.ign.fr/ortho/geoportail/r/wms-21553a.R | 6 happign-0.1.7/happign/tests/testthat/get_wms_info works/wxs.ign.fr/ortho/geoportail/r/wms-a11dce.R |only happign-0.1.7/happign/tests/testthat/hit_api_wfs perform request |only happign-0.1.7/happign/tests/testthat/test-check_input.R |only happign-0.1.7/happign/tests/testthat/test-get_apicarto_cadastre.R | 10 happign-0.1.7/happign/tests/testthat/test-get_apicarto_commune.R |only happign-0.1.7/happign/tests/testthat/test-get_apicarto_gpu.R | 42 - happign-0.1.7/happign/tests/testthat/test-get_last_news.R |only happign-0.1.7/happign/tests/testthat/test-get_layers_metadata.R | 46 - happign-0.1.7/happign/tests/testthat/test-get_wfs.R | 24 happign-0.1.7/happign/tests/testthat/test-get_wms_info.R | 20 happign-0.1.7/happign/tests/testthat/test-get_wms_raster.R | 126 +--- happign-0.1.7/happign/tests/testthat/test-init.R | 25 happign-0.1.7/happign/vignettes/Getting_started-unnamed-chunk-5-1.png |only happign-0.1.7/happign/vignettes/Getting_started-unnamed-chunk-6-1.png |only happign-0.1.7/happign/vignettes/Getting_started-unnamed-chunk-7-1.png |only happign-0.1.7/happign/vignettes/Getting_started.Rmd | 115 ++- happign-0.1.7/happign/vignettes/Getting_started.Rmd.orig |only happign-0.1.7/happign/vignettes/SCAN_25_SCAN_100_SCAN_OACI.Rmd | 2 happign-0.1.7/happign/vignettes/precompile.R |only happign-0.1.7/happign/vignettes/web_only/happign_for_foresters.Rmd | 233 +++----- happign-0.1.7/happign/vignettes/web_only/resolution_for_raster.Rmd | 2 85 files changed, 1301 insertions(+), 1275 deletions(-)
Title: Analyze Bacterial Pangenomes in R with 'Pagoo'
Description: Provides an encapsulated, object-oriented class system for
analyzing bacterial pangenomes. For a definition of this concept, see
Tettelin, et al. (2005) <doi:10.1073/pnas.0506758102>. It uses the R6
package as backend. It was designed in order to facilitate and speed-up
the comparative analysis of multiple bacterial genomes, standardizing and
optimizing routine tasks performed everyday. There are a handful of things
done everyday when working with bacterial pangenomes: subset, summarize,
extract, visualize and store data. So, 'pagoo' is intended to facilitate these
tasks as much as possible. For a description of the implemented data structure
and methods, see Ferres & Iraola (2020), <doi:10.1101/2020.07.29.226951>.
Author: Ignacio Ferres [aut, cre] ,
Gregorio Iraola [aut] ,
Institut Pasteur de Montevideo [fnd]
Maintainer: Ignacio Ferres <iferres@pasteur.edu.uy>
Diff between pagoo versions 0.3.13 dated 2022-08-31 and 0.3.17 dated 2022-11-18
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 16 ++++++++++++++++ R/panaroo_2_pagoo.R | 16 +++++++++------- R/roary_2_pagoo.R | 9 ++++++--- inst/doc/Input.html | 22 +++++++++++----------- inst/doc/Methods_Plots.html | 2 +- inst/doc/Recipes.html | 2 +- 8 files changed, 54 insertions(+), 33 deletions(-)
Title: Add a Download Button to a 'shiny' Plot or 'plotly'
Description: Add a download button to a 'shiny' plot or 'plotly' that appears when
the plot is hovered. A tooltip, styled to resemble 'plotly' buttons, is displayed
on hover of the download button. The download button can be used to allow users
to download the dataset used for a plot.
Author: Alex Pickering
Maintainer: Alex Pickering <alexvpickering@gmail.com>
Diff between shinydlplot versions 0.1.3 dated 2020-12-03 and 0.1.4 dated 2022-11-18
DESCRIPTION | 9 ++++----- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/downloadablePlot.R | 32 +++++++++++++++++++++++++++++--- R/downloadablePlotly.R | 2 +- man/downloadablePlot.Rd | 6 +----- man/downloadablePlotUI.Rd | 13 ++++--------- man/downloadablePlotly.Rd | 6 +----- man/downloadablePlotlyUI.Rd | 8 +------- 9 files changed, 53 insertions(+), 43 deletions(-)
Title: Reference-Based Multiple Imputation for Ordinal/Binary Response
Description: Reference-based multiple imputation of ordinal and binary responses under Bayesian
framework, as described in Wang and Liu (2022) <arXiv:2203.02771>. Methods for
missing-not-at-random include Jump-to-Reference (J2R), Copy Reference (CR), and Delta
Adjustment which can generate tipping point analysis.
Author: Ying Liu [aut],
Tony Wang [aut, cre]
Maintainer: Tony Wang <xwang@imedacs.com>
Diff between remiod versions 1.0.1 dated 2022-09-05 and 1.0.2 dated 2022-11-18
remiod-1.0.1/remiod/inst/doc/ExampleBinary.md |only remiod-1.0.1/remiod/inst/doc/ExampleGauss.md |only remiod-1.0.1/remiod/inst/doc/introremiod.md |only remiod-1.0.1/remiod/vignettes/ExampleBinary.md |only remiod-1.0.1/remiod/vignettes/ExampleGauss.md |only remiod-1.0.1/remiod/vignettes/introremiod.md |only remiod-1.0.1/remiod/vignettes/missing-1.png |only remiod-1.0.1/remiod/vignettes/missing-2.png |only remiod-1.0.1/remiod/vignettes/missing-3.png |only remiod-1.0.1/remiod/vignettes/probit_plot-1.png |only remiod-1.0.1/remiod/vignettes/probit_plot-2.png |only remiod-1.0.1/remiod/vignettes/trace-1.png |only remiod-1.0.2/remiod/DESCRIPTION | 10 +-- remiod-1.0.2/remiod/MD5 | 34 +++++------- remiod-1.0.2/remiod/README.md | 4 - remiod-1.0.2/remiod/build/vignette.rds |binary remiod-1.0.2/remiod/inst/doc/ExampleBinary.html | 4 - remiod-1.0.2/remiod/inst/doc/ExampleBinary.html.asis |only remiod-1.0.2/remiod/inst/doc/ExampleGauss.html | 2 remiod-1.0.2/remiod/inst/doc/ExampleGauss.html.asis |only remiod-1.0.2/remiod/inst/doc/introremiod.html | 5 + remiod-1.0.2/remiod/inst/doc/introremiod.html.asis |only remiod-1.0.2/remiod/man/antidep.Rd | 50 +++++++++--------- remiod-1.0.2/remiod/man/mcmcplot.Rd | 12 ---- remiod-1.0.2/remiod/vignettes/ExampleBinary.html.asis |only remiod-1.0.2/remiod/vignettes/ExampleGauss.html.asis |only remiod-1.0.2/remiod/vignettes/introremiod.html.asis |only 27 files changed, 53 insertions(+), 68 deletions(-)
Title: Creation of in-Text Summary Table
Description: Creation of tables of summary statistics or counts for clinical data (for 'TLFs').
These tables can be exported as in-text table (with the 'flextable' package) for a Clinical Study Report
(Word format) or a 'topline' presentation (PowerPoint format),
or as interactive table (with the 'DT' package) to an html document for clinical data review.
Author: Laure Cougnaud [aut, cre],
Michela Pasetto [aut],
Margaux Faes [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between inTextSummaryTable versions 3.2.0 dated 2022-10-01 and 3.2.1 dated 2022-11-18
DESCRIPTION | 10 MD5 | 30 R/subjectProfileSummaryPlot.R | 30 build/vignette.rds |binary inst/NEWS | 3 inst/doc/inTextSummaryTable-advanced.html | 662 +- inst/doc/inTextSummaryTable-aesthetics.html | 491 -- inst/doc/inTextSummaryTable-createTables.html | 4320 ++++++++---------- inst/doc/inTextSummaryTable-exportTables.html | 1689 +++---- inst/doc/inTextSummaryTable-introduction.html | 306 - inst/doc/inTextSummaryTable-standardTables.html | 874 +-- inst/doc/inTextSummaryTable-visualization.html | 444 - inst/examples |only tests/testthat/table-base-test.txt |only tests/testthat/table-base.txt |only tests/testthat/table-test.txt |only tests/testthat/table.txt |only tests/testthat/test_subjectProfileSummaryPlot-theme.R | 3 18 files changed, 3890 insertions(+), 4972 deletions(-)
More information about inTextSummaryTable at CRAN
Permanent link
Title: Visualization of Patient Profiles
Description: Creation of patient profile visualizations for
exploration, diagnostic or monitoring purposes during a clinical trial.
These static visualizations display a patient-specific overview
of the evolution during the trial time frame of
parameters of interest (as laboratory, ECG, vital signs),
presence of adverse events, exposure to a treatment;
associated with metadata patient information,
as demography, concomitant medication.
The visualizations can be tailored for specific domain(s) or endpoint(s) of interest.
Visualizations are exported into patient profile report(s)
or can be embedded in custom report(s).
Author: Laure Cougnaud [aut, cre],
Margaux Faes [rev] ,
Open Analytics [cph]
Maintainer: Laure Cougnaud <laure.cougnaud@openanalytics.eu>
Diff between patientProfilesVis versions 2.0.2 dated 2021-09-28 and 2.0.5 dated 2022-11-18
DESCRIPTION | 12 - MD5 | 35 +++-- NAMESPACE | 1 R/report_addReferenceLinesProfilePlot.R | 9 - build/vignette.rds |binary inst/NEWS | 8 + inst/doc/patientProfiles-template-SDTM.R |only inst/doc/patientProfiles-template-SDTM.html | 33 ++--- inst/doc/patientProfilesVis-introduction.R |only inst/doc/patientProfilesVis-introduction.html | 135 ++++++++++----------- man/subjectProfileEventPlot.Rd | 4 man/subjectProfileIntervalPlot.Rd | 4 man/subjectProfileLinePlot.Rd | 4 tests/testthat/test_addReferenceLinesProfilePlot.R | 13 +- tests/testthat/test_miscellaneous.R | 135 +++++++++++++++++++++ tests/testthat/test_subjectProfileLinePlot.R | 6 vignettes/figures |only 17 files changed, 281 insertions(+), 118 deletions(-)
More information about patientProfilesVis at CRAN
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Title: Calculating Optimal and D-Augmented Designs
Description: Calculates D-, Ds-, A- and I-optimal designs for non-linear models, via an implementation of the cocktail algorithm (Yu, 2011, <doi:10.1007/s11222-010-9183-2>). Compares designs via their efficiency, and D-augments any design with a controlled efficiency. An efficient rounding function has been provided to transform approximate designs to exact designs.
Author: Carlos de la Calle-Arroyo [aut, cre]
,
Jesus Lopez-Fidalgo [aut] ,
Licesio J. Rodriguez-Aragon [aut]
Maintainer: Carlos de la Calle-Arroyo <carlos.calle.arroyo@gmail.com>
Diff between optedr versions 1.0.1 dated 2022-01-20 and 2.0.0 dated 2022-11-18
optedr-1.0.1/optedr/man/delta_bound.Rd |only optedr-1.0.1/optedr/man/sens_val_to_add.Rd |only optedr-2.0.0/optedr/DESCRIPTION | 17 optedr-2.0.0/optedr/MD5 | 151 optedr-2.0.0/optedr/NAMESPACE | 23 optedr-2.0.0/optedr/NEWS.md | 11 optedr-2.0.0/optedr/R/augment.R | 832 + optedr-2.0.0/optedr/R/crit_eff.R | 54 optedr-2.0.0/optedr/R/efficient_round.R | 4 optedr-2.0.0/optedr/R/inf_mat_sens.R | 12 optedr-2.0.0/optedr/R/shiny_examples.R | 2 optedr-2.0.0/optedr/R/utils.R | 80 optedr-2.0.0/optedr/R/wf_mult.R | 53 optedr-2.0.0/optedr/inst/shiny-examples/AddPoints/app.R | 4342 +++++----- optedr-2.0.0/optedr/inst/shiny-examples/AddPoints/dopt.R | 1256 +- optedr-2.0.0/optedr/inst/shiny-examples/D-Optimality/app.R | 1462 +-- optedr-2.0.0/optedr/inst/shiny-examples/D-Optimality/dopt.R | 2952 +++--- optedr-2.0.0/optedr/inst/shiny-examples/D-Optimality/presentacion.Rmd | 58 optedr-2.0.0/optedr/man/DWFMult.Rd | 138 optedr-2.0.0/optedr/man/DsWFMult.Rd | 140 optedr-2.0.0/optedr/man/IWFMult.Rd | 142 optedr-2.0.0/optedr/man/WFMult.Rd | 172 optedr-2.0.0/optedr/man/add_design.Rd | 42 optedr-2.0.0/optedr/man/add_points.Rd | 46 optedr-2.0.0/optedr/man/augment_design.Rd | 126 optedr-2.0.0/optedr/man/check_inputs.Rd | 153 optedr-2.0.0/optedr/man/crit.Rd | 64 optedr-2.0.0/optedr/man/crosspoints.Rd | 62 optedr-2.0.0/optedr/man/daugment_design.Rd |only optedr-2.0.0/optedr/man/dcrit.Rd | 40 optedr-2.0.0/optedr/man/delete_points.Rd | 48 optedr-2.0.0/optedr/man/design_efficiency.Rd | 64 optedr-2.0.0/optedr/man/dsaugment_design.Rd |only optedr-2.0.0/optedr/man/dscrit.Rd | 40 optedr-2.0.0/optedr/man/dsens.Rd | 38 optedr-2.0.0/optedr/man/dssens.Rd | 44 optedr-2.0.0/optedr/man/eff.Rd | 66 optedr-2.0.0/optedr/man/efficient_round.Rd | 68 optedr-2.0.0/optedr/man/findmax.Rd | 46 optedr-2.0.0/optedr/man/findmaxval.Rd | 46 optedr-2.0.0/optedr/man/findminval.Rd | 46 optedr-2.0.0/optedr/man/getCross2.Rd | 58 optedr-2.0.0/optedr/man/getPar.Rd | 36 optedr-2.0.0/optedr/man/getStart.Rd | 54 optedr-2.0.0/optedr/man/get_augment_region.Rd |only optedr-2.0.0/optedr/man/get_daugment_region.Rd |only optedr-2.0.0/optedr/man/get_dsaugment_region.Rd |only optedr-2.0.0/optedr/man/get_laugment_region.Rd |only optedr-2.0.0/optedr/man/gradient.Rd | 50 optedr-2.0.0/optedr/man/gradient22.Rd |only optedr-2.0.0/optedr/man/icrit.Rd | 42 optedr-2.0.0/optedr/man/inf_mat.Rd | 46 optedr-2.0.0/optedr/man/integrate_reg_int.Rd | 44 optedr-2.0.0/optedr/man/isens.Rd | 48 optedr-2.0.0/optedr/man/laugment_design.Rd |only optedr-2.0.0/optedr/man/opt_des.Rd | 189 optedr-2.0.0/optedr/man/plot.optdes.Rd | 44 optedr-2.0.0/optedr/man/plot_convergence.Rd | 44 optedr-2.0.0/optedr/man/plot_sens.Rd | 48 optedr-2.0.0/optedr/man/print.optdes.Rd | 44 optedr-2.0.0/optedr/man/sens.Rd | 66 optedr-2.0.0/optedr/man/shiny_augment.Rd | 28 optedr-2.0.0/optedr/man/shiny_optimal.Rd | 28 optedr-2.0.0/optedr/man/summary.optdes.Rd | 44 optedr-2.0.0/optedr/man/tr.Rd | 34 optedr-2.0.0/optedr/man/update_design.Rd | 60 optedr-2.0.0/optedr/man/update_design_total.Rd | 48 optedr-2.0.0/optedr/man/update_sequence.Rd | 40 optedr-2.0.0/optedr/man/update_weights.Rd | 56 optedr-2.0.0/optedr/man/update_weightsDS.Rd | 56 optedr-2.0.0/optedr/man/update_weightsI.Rd | 58 optedr-2.0.0/optedr/man/weight_function.Rd |only optedr-2.0.0/optedr/tests/testthat.R | 8 optedr-2.0.0/optedr/tests/testthat/test-augment.R | 94 optedr-2.0.0/optedr/tests/testthat/test-crit_eff.R | 6 optedr-2.0.0/optedr/tests/testthat/test-effiency.R | 62 optedr-2.0.0/optedr/tests/testthat/test-inf_mat_sens.R | 6 optedr-2.0.0/optedr/tests/testthat/test-input_checks.R | 8 optedr-2.0.0/optedr/tests/testthat/test-opt_des.R | 90 optedr-2.0.0/optedr/tests/testthat/test-rounding.R | 58 optedr-2.0.0/optedr/tests/testthat/test-utils.R | 6 optedr-2.0.0/optedr/tests/testthat/test-wf_mult.R | 6 82 files changed, 7704 insertions(+), 6845 deletions(-)
Title: Manipulation of JSON Strings
Description: Fast manipulation of JSON strings. Allows to extract or
delete an element in a JSON string, merge two JSON strings, and more.
Author: Stephane Laurent [aut, cre],
Niels Lohmann [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jsonStrings versions 2.1.0 dated 2022-10-17 and 2.1.1 dated 2022-11-18
DESCRIPTION | 6 MD5 | 10 - NEWS.md | 5 R/jsonStrings.R | 107 ++++++-------- README.md | 412 +++++++++++++++++++++++++++--------------------------- man/jsonString.Rd | 4 6 files changed, 275 insertions(+), 269 deletions(-)
Title: Discrete Multivariate Probability Distributions
Description: Provides an object class for dealing with many multivariate
probability distributions at once, useful for simulation.
Author: Robin Evans [aut, cre]
Maintainer: Robin Evans <evans@stats.ox.ac.uk>
Diff between contingency versions 0.0.9 dated 2022-11-15 and 0.0.10 dated 2022-11-18
DESCRIPTION | 8 +- MD5 | 8 +- R/zzz.R | 9 -- build/vignette.rds |binary inst/doc/tables.html | 197 ++++++++++++++++++++++++++------------------------- 5 files changed, 111 insertions(+), 111 deletions(-)
Title: Downloads and Organizes Financial Data from Yahoo Finance
Description: Facilitates download of financial data from Yahoo Finance <https://finance.yahoo.com/>,
a vast repository of stock price data across multiple financial exchanges. The package offers a local caching system
and support for parallel computation.
Author: Marcelo Perlin [aut, cre],
Nic Crane [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/523>),
Alexander Fischer [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/523>)
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Diff between yfR versions 1.0.3 dated 2022-10-31 and 1.0.4 dated 2022-11-18
DESCRIPTION | 15 ++--- MD5 | 32 +++++------ NEWS.md | 5 + R/yf_get.R | 89 ++++++++++++++++--------------- R/yf_get_index_components.R | 3 + R/yf_get_single_ticker.R | 49 ++++++++++------- R/yf_utils.R | 21 +++++++ build/vignette.rds |binary inst/CITATION | 4 - inst/WORDLIST | 1 inst/doc/diff-batchgetsymbols.html | 4 - inst/doc/getting-started.html | 56 +++++++++---------- inst/doc/using-collections.html | 4 - tests/testthat/test-utils.R | 15 +++++ tests/testthat/test-yf_collection.R | 10 ++- tests/testthat/test-yf_convert_to_wide.R | 3 - tests/testthat/test-yf_get.R | 48 +++++++++++++--- 17 files changed, 227 insertions(+), 132 deletions(-)
Title: Automatically Retrieve Multidimensional Distributed Data Sets
Description: Tool to automatically fetch, transform and arrange subsets of
multi- dimensional data sets (collections of files) stored in local and/or
remote file systems or servers, using multicore capabilities where possible.
The tool provides an interface to perceive a collection of data sets as a single
large multidimensional data array, and enables the user to request for automatic
retrieval, processing and arrangement of subsets of the large array. Wrapper
functions to add support for custom file formats can be plugged in/out, making
the tool suitable for any research field where large multidimensional data sets
are involved.
Author: Nicolau Manubens [aut],
An-Chi Ho [aut, cre],
Nuria Perez-Zanon [aut] ,
Javier Vegas [ctb],
Pierre-Antoine Bretonniere [ctb],
Roberto Serrano [ctb],
Eva Rifa [ctb],
BSC-CNS [aut, cph]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between startR versions 2.2.0 dated 2022-02-15 and 2.2.1 dated 2022-11-18
startR-2.2.0/startR/inst/PlotProfiling.R |only startR-2.2.1/startR/DESCRIPTION | 13 startR-2.2.1/startR/MD5 | 27 - startR-2.2.1/startR/NAMESPACE | 1 startR-2.2.1/startR/NEWS.md | 17 startR-2.2.1/startR/R/AddStep.R | 10 startR-2.2.1/startR/R/ByChunks.R | 5 startR-2.2.1/startR/R/Collect.R | 2 startR-2.2.1/startR/R/Compute.R | 7 startR-2.2.1/startR/R/NcDataReader.R | 215 ++++++----- startR-2.2.1/startR/R/SelectorChecker.R | 9 startR-2.2.1/startR/R/Start.R | 604 +++++++++++++++++++++---------- startR-2.2.1/startR/R/Utils.R | 27 + startR-2.2.1/startR/R/zzz.R | 248 ++++++++++-- startR-2.2.1/startR/man/Compute.Rd | 2 15 files changed, 826 insertions(+), 361 deletions(-)
Title: Mixed-Effect Models, with or without Spatial Random Effects
Description: Inference based on models with or without spatially-correlated random effects, multivariate responses, or non-Gaussian random effects (e.g., Beta). Variation in residual variance (heteroscedasticity) can itself be represented by a mixed-effect model. Both classical geostatistical models (Rousset and Ferdy 2014 <doi:10.1111/ecog.00566>), and Markov random field models on irregular grids (as considered in the 'INLA' package, <https://www.r-inla.org>), can be fitted, with distinct computational procedures exploiting the sparse matrix representations for the latter case and other autoregressive models. Laplace approximations are used for likelihood or restricted likelihood. Penalized quasi-likelihood and other variants discussed in the h-likelihood literature (Lee and Nelder 2001 <doi:10.1093/biomet/88.4.987>) are also implemented.
Author: Francois Rousset [aut, cre, cph]
,
Jean-Baptiste Ferdy [aut, cph],
Alexandre Courtiol [aut]
Maintainer: Francois Rousset <francois.rousset@umontpellier.fr>
Diff between spaMM versions 4.0.0 dated 2022-10-20 and 4.1.0 dated 2022-11-18
spaMM-4.0.0/spaMM/R/infomat.R |only spaMM-4.0.0/spaMM/man/get_infomat.Rd |only spaMM-4.1.0/spaMM/DESCRIPTION | 18 spaMM-4.1.0/spaMM/MD5 | 155 ++-- spaMM-4.1.0/spaMM/NAMESPACE | 7 spaMM-4.1.0/spaMM/R/HLCor.R | 16 spaMM-4.1.0/spaMM/R/HLCor_body.R | 50 - spaMM-4.1.0/spaMM/R/HLFactorList.R | 6 spaMM-4.1.0/spaMM/R/HLfit.R | 43 - spaMM-4.1.0/spaMM/R/HLfit_Internals.R | 8 spaMM-4.1.0/spaMM/R/HLfit_body.R | 49 + spaMM-4.1.0/spaMM/R/HLfit_body_augZXy.R | 4 spaMM-4.1.0/spaMM/R/HLframes.R | 3 spaMM-4.1.0/spaMM/R/LMLTslots.R | 89 +- spaMM-4.1.0/spaMM/R/LR.R | 60 + spaMM-4.1.0/spaMM/R/antisym.R |only spaMM-4.1.0/spaMM/R/augZXy_obj.R | 2 spaMM-4.1.0/spaMM/R/calc_LRT.R | 2 spaMM-4.1.0/spaMM/R/confint.R | 74 -- spaMM-4.1.0/spaMM/R/corrFamilies.R | 21 spaMM-4.1.0/spaMM/R/corrHLfit-internals.R | 22 spaMM-4.1.0/spaMM/R/corrHLfit.R | 20 spaMM-4.1.0/spaMM/R/corrHLfit_body.R | 25 spaMM-4.1.0/spaMM/R/corrPars.R | 6 spaMM-4.1.0/spaMM/R/cov_new_fix.R | 15 spaMM-4.1.0/spaMM/R/drop1.R |only spaMM-4.1.0/spaMM/R/extractors.R | 166 ++++- spaMM-4.1.0/spaMM/R/fitme.R | 1 spaMM-4.1.0/spaMM/R/fitme_body.R | 43 - spaMM-4.1.0/spaMM/R/fitme_fitmv_internals.R | 207 +++--- spaMM-4.1.0/spaMM/R/fitmecorrHLfit_body_internals.R | 63 + spaMM-4.1.0/spaMM/R/fitmv_body.R | 22 spaMM-4.1.0/spaMM/R/geo_info.R | 11 spaMM-4.1.0/spaMM/R/get_cPredVar.R | 2 spaMM-4.1.0/spaMM/R/get_inits_by_glm.R | 93 +- spaMM-4.1.0/spaMM/R/llm.fit.R | 1 spaMM-4.1.0/spaMM/R/locoptim.R | 326 +++++----- spaMM-4.1.0/spaMM/R/makeLowerUpper.R | 9 spaMM-4.1.0/spaMM/R/multiFRK.R | 11 spaMM-4.1.0/spaMM/R/negbin1.R | 2 spaMM-4.1.0/spaMM/R/numInfo.R |only spaMM-4.1.0/spaMM/R/postfit_internals.R | 11 spaMM-4.1.0/spaMM/R/predict.R | 131 ++-- spaMM-4.1.0/spaMM/R/preprocess.R | 5 spaMM-4.1.0/spaMM/R/preprocess_MV.R | 35 - spaMM-4.1.0/spaMM/R/preprocess_internals.R | 2 spaMM-4.1.0/spaMM/R/separator.R | 4 spaMM-4.1.0/spaMM/R/spaMM.data.R | 8 spaMM-4.1.0/spaMM/R/summary.HL.R | 2 spaMM-4.1.0/spaMM/R/update.HL.R | 31 spaMM-4.1.0/spaMM/R/utils.R | 16 spaMM-4.1.0/spaMM/inst/NEWS.Rd | 20 spaMM-4.1.0/spaMM/man/AIC.Rd | 65 + spaMM-4.1.0/spaMM/man/HLCor.Rd | 8 spaMM-4.1.0/spaMM/man/HLfit.Rd | 6 spaMM-4.1.0/spaMM/man/IMRF.Rd | 1 spaMM-4.1.0/spaMM/man/R2.Rd |only spaMM-4.1.0/spaMM/man/anova.HLfit.Rd | 14 spaMM-4.1.0/spaMM/man/as_LMLT.Rd | 6 spaMM-4.1.0/spaMM/man/beta_resp.Rd | 4 spaMM-4.1.0/spaMM/man/confint.Rd | 6 spaMM-4.1.0/spaMM/man/corrFamily.Rd | 7 spaMM-4.1.0/spaMM/man/corrHLfit.Rd | 7 spaMM-4.1.0/spaMM/man/diallel.Rd | 48 + spaMM-4.1.0/spaMM/man/drop1.HLfit.Rd |only spaMM-4.1.0/spaMM/man/extractors.Rd | 7 spaMM-4.1.0/spaMM/man/fitme.Rd | 20 spaMM-4.1.0/spaMM/man/fixed.Rd | 54 + spaMM-4.1.0/spaMM/man/is_separated.Rd | 4 spaMM-4.1.0/spaMM/man/method.Rd | 6 spaMM-4.1.0/spaMM/man/numInfo.Rd |only spaMM-4.1.0/spaMM/man/pedigree.Rd | 66 +- spaMM-4.1.0/spaMM/man/residuals.HLfit.Rd | 4 spaMM-4.1.0/spaMM/man/spaMM-internal.Rd | 1 spaMM-4.1.0/spaMM/man/update.Rd | 2 spaMM-4.1.0/spaMM/tests/test-all.R | 6 spaMM-4.1.0/spaMM/tests/testthat/nestedFiles/test-mv-nested.R | 16 spaMM-4.1.0/spaMM/tests/testthat/test-ANOVA-&-lmerTest.R | 91 ++ spaMM-4.1.0/spaMM/tests/testthat/test-LLM.R | 15 spaMM-4.1.0/spaMM/tests/testthat/test-numInfo.R |only spaMM-4.1.0/spaMM/tests/testthat/test-obsInfo.R | 2 spaMM-4.1.0/spaMM/tests/testthat/test-pedigree.R | 34 - spaMM-4.1.0/spaMM/tests/testthat/test-predVar.R | 17 83 files changed, 1502 insertions(+), 932 deletions(-)
Title: Web Interface to 'R' Functions
Description: Web front end for your 'R' functions producing plots or tables.
If you have a function or set of related functions, you can make them
available over the internet through a web browser. This is the same
motivation as the 'shiny' package, but note that the development of
'shinylight' is not in any way linked to that of 'shiny' (beyond the use of
the 'httpuv' package). You might prefer 'shinylight' to 'shiny' if you want
a lighter weight deployment with easier horizontal scaling, or if you want
to develop your front end yourself in JavaScript and HTML just using
a lightweight remote procedure call interface to your R code on the
server.
Author: Pieter Vermeesch [aut],
Tim Band [aut, cre]
Maintainer: Tim Band <t.band@ucl.ac.uk>
Diff between shinylight versions 1.0.0 dated 2022-10-18 and 1.1 dated 2022-11-18
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/shinylight.R | 33 +++++++++++++++++++++++++++++---- README.md | 8 ++++++++ man/rrpcServer.Rd | 7 ++++++- 5 files changed, 51 insertions(+), 13 deletions(-)
Title: Clustering Genetic Sequence Data Using the HierBAPS Algorithm
Description: Implements the hierarchical Bayesian analysis of populations structure (hierBAPS)
algorithm of Cheng et al. (2013) <doi:10.1093/molbev/mst028> for clustering DNA sequences
from multiple sequence alignments in FASTA format.
The implementation includes improved defaults and plotting capabilities
and unlike the original 'MATLAB' version removes singleton SNPs by default.
Author: Gerry Tonkin-Hill [cre, aut]
Maintainer: Gerry Tonkin-Hill <g.tonkinhill@gmail.com>
Diff between rhierbaps versions 1.1.3 dated 2019-12-11 and 1.1.4 dated 2022-11-18
DESCRIPTION | 11 MD5 | 24 - R/calc_change_in_ml.R | 2 R/load_fasta.R | 6 R/move_units_1.R | 2 R/plot_sub_cluster.R | 2 R/reallocate_units_4.R | 2 README.md | 186 +++++++---- build/vignette.rds |binary inst/doc/introduction.html | 505 +++++++++++++++++++++++------- inst/vignette-supp/unnamed-chunk-15-1.png |binary inst/vignette-supp/unnamed-chunk-16-1.png |binary inst/vignette-supp/unnamed-chunk-17-1.png |binary 13 files changed, 543 insertions(+), 197 deletions(-)
Title: Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)
Description: Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.
Author: Renaud Gaujoux, Cathal Seoighe
Maintainer: Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>
Diff between NMF versions 0.24.0 dated 2022-03-29 and 0.25 dated 2022-11-18
DESCRIPTION | 16 MD5 | 77 +- NAMESPACE | 6 NEWS | 3 R/Bioc-layer.R | 4 R/NMFSet-class.R | 12 R/NMFStrategyIterative-class.R | 6 R/nmf-package.R | 6 R/options.R | 1138 +++++++++++++++++++++++++++++++++ R/registry-algorithms.R | 1277 +++++++++++++++++++++++++++++++++++++- R/registry-seed.R | 2 R/registry.R | 5 R/utils.R | 2 R/vignetteFunctions.R |only build/vignette.rds |binary inst/doc/NMF-vignette.R | 108 +++ inst/doc/NMF-vignette.Rnw | 111 +++ inst/doc/NMF-vignette.pdf |binary inst/doc/consensus.pdf |binary inst/doc/heatmaps.R | 23 inst/doc/heatmaps.Rnw | 23 inst/doc/heatmaps.pdf |binary man/Frobenius-nmf.Rd | 2 man/KL-nmf.Rd | 2 man/NMFStrategyIterative-class.Rd | 2 man/NMFfitX1-class.Rd | 6 man/NMFfitXn-class.Rd | 6 man/NMFstd-class.Rd | 2 man/isCRANcheck.Rd |only man/latex.Rd |only man/nmf.Rd | 2 man/nmf_update_KL.Rd | 2 man/nmf_update_euclidean.Rd | 2 man/offset-nmf.Rd | 2 man/options.Rd | 10 man/registry-algorithm.Rd | 4 man/setNMFSeed.Rd | 2 man/syntheticNMF.Rd | 2 src/utils.cpp | 2 vignettes/NMF-vignette.Rnw | 111 +++ vignettes/heatmaps.Rnw | 23 41 files changed, 2845 insertions(+), 156 deletions(-)
Title: Functions that Apply to Rows and Columns of Matrices (and to
Vectors)
Description: High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().
Author: Henrik Bengtsson [aut, cre, cph],
Constantin Ahlmann-Eltze [ctb],
Hector Corrada Bravo [ctb],
Robert Gentleman [ctb],
Jan Gleixner [ctb],
Peter Hickey [ctb],
Ola Hossjer [ctb],
Harris Jaffee [ctb],
Dongcan Jiang [ctb],
Peter Langfelder [ctb],
Brian M [...truncated...]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between matrixStats versions 0.62.0 dated 2022-04-19 and 0.63.0 dated 2022-11-18
matrixStats-0.62.0/matrixStats/NEWS |only matrixStats-0.63.0/matrixStats/DESCRIPTION | 8 - matrixStats-0.63.0/matrixStats/MD5 | 42 +++--- matrixStats-0.63.0/matrixStats/NEWS.md |only matrixStats-0.63.0/matrixStats/R/000.DEPRECATION.R | 11 + matrixStats-0.63.0/matrixStats/R/rowVars.R | 37 +++++ matrixStats-0.63.0/matrixStats/R/sum2.R | 2 matrixStats-0.63.0/matrixStats/R/validateIndices.R | 9 - matrixStats-0.63.0/matrixStats/build/vignette.rds |binary matrixStats-0.63.0/matrixStats/inst/doc/matrixStats-methods.html | 62 +++++----- matrixStats-0.63.0/matrixStats/man/binMeans.Rd | 3 matrixStats-0.63.0/matrixStats/man/rowCumsums.Rd | 24 ++- matrixStats-0.63.0/matrixStats/man/rowTabulates.Rd | 6 matrixStats-0.63.0/matrixStats/man/rowVars.Rd | 33 +++++ matrixStats-0.63.0/matrixStats/man/sum2.Rd | 2 matrixStats-0.63.0/matrixStats/man/validateIndices.Rd | 7 - matrixStats-0.63.0/matrixStats/man/weightedMean.Rd | 3 matrixStats-0.63.0/matrixStats/man/weightedVar.Rd | 3 matrixStats-0.63.0/matrixStats/src/allocMatrix2.c | 6 matrixStats-0.63.0/matrixStats/src/naming.c | 32 ++--- matrixStats-0.63.0/matrixStats/src/rowRanksWithTies.c | 5 matrixStats-0.63.0/matrixStats/src/validateIndices.c | 7 - matrixStats-0.63.0/matrixStats/tests/validateIndices.R | 2 23 files changed, 191 insertions(+), 113 deletions(-)
Title: Generalised Additive Models for Location Scale and Shape
Description: Functions for fitting the Generalized Additive Models for Location Scale and Shape introduced by Rigby and Stasinopoulos (2005), <doi:10.1111/j.1467-9876.2005.00510.x>. The models use a distributional regression approach where all the parameters of the conditional distribution of the response variable are modelled using explanatory variables.
Author: Mikis Stasinopoulos [aut, cre, cph],
Bob Rigby [aut],
Vlasios Voudouris [ctb],
Calliope Akantziliotou [ctb],
Marco Enea [ctb],
Daniil Kiose [ctb]
Maintainer: Mikis Stasinopoulos <d.stasinopoulos@londonmet.ac.uk>
Diff between gamlss versions 5.4-3 dated 2022-04-23 and 5.4-10 dated 2022-11-18
gamlss-5.4-10/gamlss/DESCRIPTION | 8 gamlss-5.4-10/gamlss/MD5 | 59 +- gamlss-5.4-10/gamlss/R/DropAddStepGAIC-Parallel.R | 472 ++++++++++------------ gamlss-5.4-10/gamlss/R/Formulae2data.R | 4 gamlss-5.4-10/gamlss/R/SUMMARY.R | 1 gamlss-5.4-10/gamlss/R/centile-pred_30_06_22.R |only gamlss-5.4-10/gamlss/R/confint-gamlss-29-06-22.R |only gamlss-5.4-10/gamlss/R/gamlssML.R | 3 gamlss-5.4-10/gamlss/R/get-K-rvcov-16-06-2913.R | 3 gamlss-5.4-10/gamlss/R/getPEF.R | 1 gamlss-5.4-10/gamlss/R/hatvalues.R | 2 gamlss-5.4-10/gamlss/R/histSmo.R | 14 gamlss-5.4-10/gamlss/R/lpred.R | 116 ++--- gamlss-5.4-10/gamlss/R/pb.R | 1 gamlss-5.4-10/gamlss/R/pbm.R | 1 gamlss-5.4-10/gamlss/R/pbp.R | 1 gamlss-5.4-10/gamlss/R/predictAll_22_08_22.R |only gamlss-5.4-10/gamlss/R/pvc.R | 2 gamlss-5.4-10/gamlss/R/quantSheets.R | 17 gamlss-5.4-10/gamlss/R/rqres.R | 1 gamlss-5.4-10/gamlss/R/rqresplot_new.R | 1 gamlss-5.4-10/gamlss/R/stepGAIC-03-10-13..R | 4 gamlss-5.4-10/gamlss/R/stepGAICAll-B-Parallel.R | 1 gamlss-5.4-10/gamlss/R/term.plot-new.R | 3 gamlss-5.4-10/gamlss/R/vcov-gamlss.R | 6 gamlss-5.4-10/gamlss/build/partial.rdb |binary gamlss-5.4-10/gamlss/inst/doc |only gamlss-5.4-10/gamlss/man/centiles.pred.Rd | 4 gamlss-5.4-10/gamlss/man/lpred.Rd | 14 gamlss-5.4-10/gamlss/man/predict.gamlss.Rd | 2 gamlss-5.4-10/gamlss/man/stepGAIC.Rd | 8 gamlss-5.4-3/gamlss/R/centile-pred_23_12_21.R |only gamlss-5.4-3/gamlss/R/confint-gamlss-03-10-13.R |only gamlss-5.4-3/gamlss/R/predictAll_23_12_21.R |only 34 files changed, 373 insertions(+), 376 deletions(-)
Title: Functions and Utilities for Jordan
Description: Provides core functions and utilities for packages and other code
developed by Jordan Mark Barbone.
Author: Jordan Mark Barbone [aut, cph, cre]
Maintainer: Jordan Mark Barbone <jmbarbone@gmail.com>
Diff between fuj versions 0.1.0 dated 2022-11-01 and 0.1.1 dated 2022-11-18
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++++------- NAMESPACE | 1 + NEWS.md |only R/arithmetic.R | 15 +++++++++++++++ R/extract.R | 27 ++++++++++++++++++++++++++- README.md | 14 ++++++++++---- man/alias_arithmetic.Rd | 24 +++++++++--------------- man/alias_extract.Rd | 34 +++++++++++++++++++++------------- tests/testthat/test-arithmetic.R |only tests/testthat/test-extract.R |only tests/testthat/test-os.R |only 12 files changed, 96 insertions(+), 43 deletions(-)
Title: Compute Maximal Overlap Discrete Wavelet Transform (MODWT) and À
Trous Discrete Wavelet Transform
Description: A lightweight package to compute Maximal Overlap Discrete Wavelet
Transform (MODWT) and À Trous Discrete Wavelet Transform by leveraging the
power of 'Rcpp' to make these operations fast. This package was designed for use in forecasting, and
allows users avoid the inclusion of future data when performing wavelet decomposition of time series.
See Quilty and Adamowski (2018) <doi:10.1016/j.jhydrol.2018.05.003>.
Author: John Quilty [aut] ,
John You [aut, cre]
Maintainer: John You <johnswyou@gmail.com>
Diff between fastWavelets versions 1.0.0 dated 2022-10-27 and 1.0.1 dated 2022-11-18
DESCRIPTION | 11 ++-- LICENSE | 4 - MD5 | 40 +++++++-------- NAMESPACE | 5 + NEWS.md | 7 ++ R/RcppExports.R | 37 +++++++++++--- R/atrous_dwt.R | 8 +-- R/mo_dwt.R | 4 + R/n_boundary_coefs.R | 3 + R/shape_check.R | 53 ++++++++++---------- README.md | 24 +++++++-- man/atrous_dwt.Rd | 5 - man/mo_dwt.Rd | 2 man/n_boundary_coefs.Rd | 3 + man/scaling_coefs.Rd | 6 +- man/scaling_filter.Rd | 17 ++++++ man/shape_check.Rd | 2 man/wavelet_coefs.Rd | 6 +- src/filters.cpp | 124 +++++++++++++++++++++++++++++++++++++++++++++++- src/scaling_coefs.cpp | 7 +- src/wavelet_coefs.cpp | 7 +- 21 files changed, 285 insertions(+), 90 deletions(-)
Title: Classification, Regression and Feature Evaluation
Description: A suite of machine learning algorithms written in C++ with the R
interface contains several learning techniques for classification and regression.
Predictive models include e.g., classification and regression trees with
optional constructive induction and models in the leaves, random forests, kNN,
naive Bayes, and locally weighted regression. All predictions obtained with these
models can be explained and visualized with the 'ExplainPrediction' package.
This package is especially strong in feature evaluation where it contains several variants of
Relief algorithm and many impurity based attribute evaluation functions, e.g., Gini,
information gain, MDL, and DKM. These methods can be used for feature selection
or discretization of numeric attributes.
The OrdEval algorithm and its visualization is used for evaluation
of data sets with ordinal features and class, enabling analysis according to the
Kano model of customer satisfaction.
Several algorithms support parallel multithreaded executi [...truncated...]
Author: Marko Robnik-Sikonja and Petr Savicky
Maintainer: "Marko Robnik-Sikonja" <marko.robnik@fri.uni-lj.si>
Diff between CORElearn versions 1.57.2 dated 2022-11-16 and 1.57.3 dated 2022-11-18
ChangeLog | 3 ++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- src/frontend.cpp | 2 +- src/trutil.cpp | 8 ++++---- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: Tools to Handle and Publish Metadata as 'Atom' XML Format
Description: Provides tools to read/write/publish metadata based on the 'Atom' XML syndication format. This includes
support of 'Dublin Core' XML implementation, and a client to API(s) implementing the 'AtomPub' 'SWORD' API specification.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between atom4R versions 0.3-2 dated 2022-11-07 and 0.3-3 dated 2022-11-18
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 10 ++++++++-- R/AtomSchemas.R | 3 ++- README.md | 2 +- man/registerAtomSchema.Rd | 3 ++- 6 files changed, 22 insertions(+), 14 deletions(-)
Title: Antares Visualizations
Description: Visualize results generated by Antares, a powerful open source software
developed by RTE to simulate and study electric power systems
(more information about 'Antares' here: <https://github.com/AntaresSimulatorTeam/Antares_Simulator>).
This package provides functions that create interactive charts to help
'Antares' users visually explore the results of their simulations.
Author: Veronique Bachelier [aut, cre],
Jalal-Edine Zawam [aut],
Francois Guillem [aut],
Benoit Thieurmel [aut],
Titouan Robert [aut],
Paul Plessiez [aut],
Baptiste Seguinot [ctb],
RTE [cph]
Maintainer: Veronique Bachelier <veronique.bachelier@rte-france.com>
Diff between antaresViz versions 0.17 dated 2021-11-24 and 0.17.1 dated 2022-11-18
DESCRIPTION | 6 - MD5 | 16 ++-- NEWS.md | 4 + R/h5_utils.R | 2 inst/doc/antaresViz.R | 3 inst/doc/antaresViz.Rmd | 8 +- inst/doc/antaresViz.html | 156 ++++++++++++++++++++-------------------- tests/testthat/test-prodStack.R | 54 ++++++------- vignettes/antaresViz.Rmd | 8 +- 9 files changed, 139 insertions(+), 118 deletions(-)
Title: Image Registration Using the 'NiftyReg' Library
Description: Provides an 'R' interface to the 'NiftyReg' image registration tools
<https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration
are supported, in two and three dimensions.
Author: Jon Clayden [cre, aut] ,
Marc Modat [aut],
Benoit Presles [aut],
Thanasis Anthopoulos [aut],
Pankaj Daga [aut]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNiftyReg versions 2.7.0 dated 2020-09-12 and 2.7.1 dated 2022-11-18
DESCRIPTION | 8 +- MD5 | 38 ++++++------- NEWS | 10 +++ R/niftyreg.R | 4 + README.md | 2 src/reg-lib/_reg_aladin.cpp | 32 +++++------ src/reg-lib/_reg_aladin_sym.cpp | 10 +-- src/reg-lib/_reg_base.cpp | 4 - src/reg-lib/_reg_f3d.cpp | 90 ++++++++++++++++----------------- src/reg-lib/_reg_f3d2.cpp | 4 - src/reg-lib/_reg_f3d_sym.cpp | 28 +++++----- src/reg-lib/cpu/_reg_blockMatching.cpp | 10 +-- src/reg-lib/cpu/_reg_localTrans.cpp | 6 +- src/reg-lib/cpu/_reg_maths.cpp | 20 +++---- src/reg-lib/cpu/_reg_maths_eigen.cpp | 4 - src/reg-lib/cpu/_reg_nmi.cpp | 6 +- src/reg-lib/cpu/_reg_optimiser.cpp | 4 - src/reg-lib/cpu/_reg_resampling.cpp | 18 +++--- src/reg-lib/cpu/_reg_tools.cpp | 41 +-------------- tests/testthat/test-15-affine.R | 2 20 files changed, 160 insertions(+), 181 deletions(-)
Title: Kernel SHAP
Description: Multidimensional refinement of the Kernel SHAP algorithm
described in Ian Covert and Su-In Lee (2021)
<http://proceedings.mlr.press/v130/covert21a>. The package allows to
calculate Kernel SHAP values in an exact way, by iterative sampling
(as in the reference above), or by a hybrid of the two. As soon as
sampling is involved, the algorithm iterates until convergence, and
standard errors are provided. The package works with any model that
provides numeric predictions of dimension one or higher. Examples
include linear regression, logistic regression (on logit or
probability scale), other generalized linear models, generalized
additive models, and neural networks. The package plays well together
with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.3.0 dated 2022-09-29 and 0.3.1 dated 2022-11-18
DESCRIPTION | 6 - MD5 | 14 ++-- NEWS.md | 8 ++ R/kernelshap.R | 129 ++++++++++++++++++++++++--------------- R/utils.R | 35 +++++----- README.md | 16 ---- man/kernelshap.Rd | 51 ++++++++++----- tests/testthat/test-kernelshap.R | 20 ++++++ 8 files changed, 173 insertions(+), 106 deletions(-)
Title: Descriptive Analysis by Groups
Description: Create data summaries for quality control, extensive reports for exploring data, as well as publication-ready univariate or bivariate tables in several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figures to quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics (mean, median, frequencies, incidences, etc.). Perform the appropriate tests (t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data (Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.
Author: Isaac Subirana [aut, cre] ,
Joan Salvador [ctb]
Maintainer: Isaac Subirana <isubirana@imim.es>
Diff between compareGroups versions 4.5.1 dated 2021-03-29 and 4.6.0 dated 2022-11-18
compareGroups-4.5.1/compareGroups/data/predimed.rda |only compareGroups-4.5.1/compareGroups/inst/exdata/predimed.csv |only compareGroups-4.5.1/compareGroups/inst/exdata/predimed.dat |only compareGroups-4.5.1/compareGroups/inst/exdata/predimed.sav |only compareGroups-4.5.1/compareGroups/inst/exdata/predimed.xls |only compareGroups-4.5.1/compareGroups/inst/exdata/predimed.xlsx |only compareGroups-4.5.1/compareGroups/man/predimed.Rd |only compareGroups-4.5.1/compareGroups/vignettes/figures/GUI/step1_load_data.JPG |only compareGroups-4.5.1/compareGroups/vignettes/figures/GUI/xxxx.png |only compareGroups-4.6.0/compareGroups/DESCRIPTION | 9 compareGroups-4.6.0/compareGroups/MD5 | 127 compareGroups-4.6.0/compareGroups/NAMESPACE | 3 compareGroups-4.6.0/compareGroups/NEWS.md | 13 compareGroups-4.6.0/compareGroups/R/compareGroups.R | 2 compareGroups-4.6.0/compareGroups/R/export2latex.cbind.createTable.R | 28 compareGroups-4.6.0/compareGroups/R/export2latex.createTable.R | 26 compareGroups-4.6.0/compareGroups/R/export2pdf.R | 7 compareGroups-4.6.0/compareGroups/R/missingTable.R | 29 compareGroups-4.6.0/compareGroups/R/padjustCompareGroups.R |only compareGroups-4.6.0/compareGroups/R/z.[compareGroups.R | 13 compareGroups-4.6.0/compareGroups/build/vignette.rds |binary compareGroups-4.6.0/compareGroups/inst/app/global.R | 7 compareGroups-4.6.0/compareGroups/inst/app/helpfiles/decimalshelp.md | 9 compareGroups-4.6.0/compareGroups/inst/app/helpfiles/loadhelp.md | 4 compareGroups-4.6.0/compareGroups/inst/app/home.md | 4 compareGroups-4.6.0/compareGroups/inst/app/makeExamples.R | 50 compareGroups-4.6.0/compareGroups/inst/app/rsconnect/shinyapps.io/isubirana/compareGroups.dcf | 5 compareGroups-4.6.0/compareGroups/inst/app/server.R | 94 compareGroups-4.6.0/compareGroups/inst/app/ui.R | 1147 - 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Title: Spatial Data Analysis
Description: Methods for spatial data analysis with vector (points, lines, polygons) and raster (grid) data. Methods for vector data include standard operations such as intersect and buffer. Raster methods include global, local, zonal, and focal computations. The predict and interpolate methods facilitate the use of regression type (interpolation, machine learning) models for spatial prediction, including with satellite remote sensing data. Processing of very large files is supported. See the manual and tutorials on <https://rspatial.org/terra/> to get started. 'terra' is a replacement for the 'raster' package ('terra' can do more, and it is faster and easier to use).
Author: Robert J. Hijmans [cre, aut] ,
Roger Bivand [ctb] ,
Edzer Pebesma [ctb] ,
Michael D. Sumner [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between terra versions 1.6-17 dated 2022-09-10 and 1.6-41 dated 2022-11-18
terra-1.6-17/terra/R/deprecated.R |only terra-1.6-17/terra/man/costDistance.Rd |only terra-1.6-17/terra/man/gridDistance.Rd |only terra-1.6-17/terra/man/replace-vector.Rd |only terra-1.6-17/terra/man/replace.Rd |only terra-1.6-17/terra/src/graticule.cpp |only terra-1.6-17/terra/src/progress.hpp |only terra-1.6-17/terra/src/progress_bar.hpp |only terra-1.6-17/terra/src/progress_bar_simple.hpp |only terra-1.6-17/terra/src/progress_interrupts.hpp |only terra-1.6-17/terra/src/progress_monitor_interruptable.hpp |only terra-1.6-41/terra/DESCRIPTION | 15 terra-1.6-41/terra/MD5 | 415 +- terra-1.6-41/terra/NAMESPACE | 10 terra-1.6-41/terra/NEWS.md | 54 terra-1.6-41/terra/R/Aclasses.R | 19 terra-1.6-41/terra/R/Agenerics.R | 24 terra-1.6-41/terra/R/Arith_generics.R | 24 terra-1.6-41/terra/R/RGB.R | 37 terra-1.6-41/terra/R/RcppExports.R | 8 terra-1.6-41/terra/R/SpatRasterDataset.R | 61 terra-1.6-41/terra/R/SpatVectorCollection.R | 6 terra-1.6-41/terra/R/Zdeprecated.R | 32 terra-1.6-41/terra/R/aggregate.R | 14 terra-1.6-41/terra/R/app.R | 66 terra-1.6-41/terra/R/coerce.R | 2 terra-1.6-41/terra/R/crs.R | 43 terra-1.6-41/terra/R/dimensions.R | 38 terra-1.6-41/terra/R/distance.R | 62 terra-1.6-41/terra/R/draw.R | 10 terra-1.6-41/terra/R/expand.R | 8 terra-1.6-41/terra/R/extent.R | 51 terra-1.6-41/terra/R/extract.R | 212 - terra-1.6-41/terra/R/extract_single.R |only terra-1.6-41/terra/R/focal.R | 28 terra-1.6-41/terra/R/generics.R | 194 terra-1.6-41/terra/R/geom.R | 23 terra-1.6-41/terra/R/graticule.R |only terra-1.6-41/terra/R/hist.R | 22 terra-1.6-41/terra/R/interpolate.R | 25 terra-1.6-41/terra/R/lapp.R | 8 terra-1.6-41/terra/R/levels.R | 89 terra-1.6-41/terra/R/lines.R | 4 terra-1.6-41/terra/R/math.R | 2 terra-1.6-41/terra/R/merge.R | 18 terra-1.6-41/terra/R/messages.R | 8 terra-1.6-41/terra/R/names.R | 27 terra-1.6-41/terra/R/ncdf.R | 51 terra-1.6-41/terra/R/options.R | 8 terra-1.6-41/terra/R/pack.R | 167 terra-1.6-41/terra/R/plot.R | 4 terra-1.6-41/terra/R/plot2rasters.R | 2 terra-1.6-41/terra/R/plotRGB.R | 6 terra-1.6-41/terra/R/plot_legend.R | 164 terra-1.6-41/terra/R/plot_let.R | 46 terra-1.6-41/terra/R/plot_raster.R | 169 terra-1.6-41/terra/R/plot_vector.R | 40 terra-1.6-41/terra/R/predict.R | 59 terra-1.6-41/terra/R/rast.R | 36 terra-1.6-41/terra/R/rasterize.R | 151 terra-1.6-41/terra/R/rasterizeWin.R |only terra-1.6-41/terra/R/relate.R | 8 terra-1.6-41/terra/R/replace.R | 579 +- terra-1.6-41/terra/R/replace_layer.R |only terra-1.6-41/terra/R/replace_values.R |only terra-1.6-41/terra/R/sample.R | 31 terra-1.6-41/terra/R/show.R | 153 terra-1.6-41/terra/R/spatDF.R | 2 terra-1.6-41/terra/R/spatvec.R | 474 +- terra-1.6-41/terra/R/subset.R | 99 terra-1.6-41/terra/R/tapp.R | 41 terra-1.6-41/terra/R/update.R |only terra-1.6-41/terra/R/values.R | 105 terra-1.6-41/terra/R/vect.R | 31 terra-1.6-41/terra/R/write.R | 3 terra-1.6-41/terra/R/xyRowColCell.R | 106 terra-1.6-41/terra/R/zonal.R | 8 terra-1.6-41/terra/R/zoom.R | 2 terra-1.6-41/terra/R/zzz.R | 30 terra-1.6-41/terra/configure | 2865 +++++++------- terra-1.6-41/terra/configure.ac | 18 terra-1.6-41/terra/inst/ex/logo.tif |binary terra-1.6-41/terra/inst/tinytest/test_cats.R | 4 terra-1.6-41/terra/inst/tinytest/test_extract.R | 145 terra-1.6-41/terra/man/RGB.Rd | 6 terra-1.6-41/terra/man/SpatRaster-class.Rd | 12 terra-1.6-41/terra/man/SpatVector-class.Rd | 27 terra-1.6-41/terra/man/activeCat.Rd | 2 terra-1.6-41/terra/man/add.Rd | 2 terra-1.6-41/terra/man/adjacent.Rd | 2 terra-1.6-41/terra/man/all.equal.Rd | 4 terra-1.6-41/terra/man/app.Rd | 5 terra-1.6-41/terra/man/buffer.Rd | 16 terra-1.6-41/terra/man/catalyze.Rd | 2 terra-1.6-41/terra/man/clamp.Rd | 6 terra-1.6-41/terra/man/collapse.Rd | 2 terra-1.6-41/terra/man/colors.Rd | 6 terra-1.6-41/terra/man/compare-generics.Rd | 2 terra-1.6-41/terra/man/compareGeom.Rd | 2 terra-1.6-41/terra/man/costDist.Rd |only terra-1.6-41/terra/man/crop.Rd | 18 terra-1.6-41/terra/man/crs.Rd | 11 terra-1.6-41/terra/man/densify.Rd | 2 terra-1.6-41/terra/man/deprecated.Rd | 4 terra-1.6-41/terra/man/diff.Rd | 2 terra-1.6-41/terra/man/dimensions.Rd | 6 terra-1.6-41/terra/man/disaggregate.Rd | 5 terra-1.6-41/terra/man/distance.Rd | 24 terra-1.6-41/terra/man/draw.Rd | 3 terra-1.6-41/terra/man/elongate.Rd |only terra-1.6-41/terra/man/erase.Rd | 10 terra-1.6-41/terra/man/ext.Rd | 25 terra-1.6-41/terra/man/extend.Rd | 3 terra-1.6-41/terra/man/extract.Rd | 8 terra-1.6-41/terra/man/factors.Rd | 10 terra-1.6-41/terra/man/focal.Rd | 2 terra-1.6-41/terra/man/gdal.Rd | 2 terra-1.6-41/terra/man/geomtype.Rd | 1 terra-1.6-41/terra/man/graticule.Rd |only terra-1.6-41/terra/man/gridDist.Rd |only terra-1.6-41/terra/man/hist.Rd | 5 terra-1.6-41/terra/man/inplace.Rd | 19 terra-1.6-41/terra/man/interpIDW.Rd |only terra-1.6-41/terra/man/interpNear.Rd |only terra-1.6-41/terra/man/interpolate.Rd | 10 terra-1.6-41/terra/man/intersect.Rd | 25 terra-1.6-41/terra/man/is.lonlat.Rd | 9 terra-1.6-41/terra/man/layerCor.Rd | 2 terra-1.6-41/terra/man/linearUnits.Rd | 2 terra-1.6-41/terra/man/lines.Rd | 2 terra-1.6-41/terra/man/makeVRT.Rd | 8 terra-1.6-41/terra/man/mask.Rd | 2 terra-1.6-41/terra/man/math-generics.Rd | 7 terra-1.6-41/terra/man/mem.Rd | 2 terra-1.6-41/terra/man/merge.Rd | 36 terra-1.6-41/terra/man/minmax.Rd | 5 terra-1.6-41/terra/man/mosaic.Rd | 15 terra-1.6-41/terra/man/names.Rd | 3 terra-1.6-41/terra/man/normalize.longitude.Rd | 2 terra-1.6-41/terra/man/not.na.Rd | 2 terra-1.6-41/terra/man/perim.Rd | 2 terra-1.6-41/terra/man/plot.Rd | 53 terra-1.6-41/terra/man/plotRGB.Rd | 4 terra-1.6-41/terra/man/plot_extent.Rd |only terra-1.6-41/terra/man/plot_graticule.Rd |only terra-1.6-41/terra/man/predict.Rd | 6 terra-1.6-41/terra/man/project.Rd | 9 terra-1.6-41/terra/man/rapp.Rd | 8 terra-1.6-41/terra/man/rast.Rd | 9 terra-1.6-41/terra/man/rasterize.Rd | 4 terra-1.6-41/terra/man/rasterizeWin.Rd |only terra-1.6-41/terra/man/rcl.Rd |only terra-1.6-41/terra/man/readwrite.Rd | 2 terra-1.6-41/terra/man/replace_dollar.Rd |only terra-1.6-41/terra/man/replace_layers.Rd |only terra-1.6-41/terra/man/replace_values.Rd |only terra-1.6-41/terra/man/resample.Rd | 2 terra-1.6-41/terra/man/rotate.Rd | 26 terra-1.6-41/terra/man/sample.Rd | 202 terra-1.6-41/terra/man/sapp.Rd | 4 terra-1.6-41/terra/man/select.Rd | 2 terra-1.6-41/terra/man/selectRange.Rd | 2 terra-1.6-41/terra/man/serialize.Rd | 6 terra-1.6-41/terra/man/sieve.Rd |only terra-1.6-41/terra/man/sources.Rd | 2 terra-1.6-41/terra/man/src.Rd | 8 terra-1.6-41/terra/man/subset.Rd | 40 terra-1.6-41/terra/man/subset_dollar.Rd |only terra-1.6-41/terra/man/subset_double.Rd |only terra-1.6-41/terra/man/subset_single.Rd |only terra-1.6-41/terra/man/subst.Rd | 3 terra-1.6-41/terra/man/summarize-generics.Rd | 6 terra-1.6-41/terra/man/symdif.Rd | 4 terra-1.6-41/terra/man/tapp.Rd | 2 terra-1.6-41/terra/man/terra-package.Rd | 88 terra-1.6-41/terra/man/terrain.Rd | 4 terra-1.6-41/terra/man/text.Rd | 7 terra-1.6-41/terra/man/update.Rd |only terra-1.6-41/terra/man/vect.Rd | 2 terra-1.6-41/terra/man/vector_layers.Rd | 2 terra-1.6-41/terra/man/viewshed.Rd |only terra-1.6-41/terra/man/window.Rd | 5 terra-1.6-41/terra/man/wrap.Rd | 18 terra-1.6-41/terra/man/writeCDF.Rd | 8 terra-1.6-41/terra/man/xyCellFrom.Rd | 6 terra-1.6-41/terra/src/Makevars.ucrt | 20 terra-1.6-41/terra/src/Makevars.win | 4 terra-1.6-41/terra/src/RcppExports.cpp | 28 terra-1.6-41/terra/src/RcppFunctions.cpp | 8 terra-1.6-41/terra/src/RcppModule.cpp | 384 + terra-1.6-41/terra/src/arith.cpp | 123 terra-1.6-41/terra/src/crs.cpp | 41 terra-1.6-41/terra/src/crs.h | 1 terra-1.6-41/terra/src/distRaster.cpp | 812 +++ terra-1.6-41/terra/src/extract.cpp | 13 terra-1.6-41/terra/src/file_utils.cpp | 2 terra-1.6-41/terra/src/focal.cpp | 6 terra-1.6-41/terra/src/gdal_algs.cpp | 704 ++- terra-1.6-41/terra/src/gdalio.cpp | 34 terra-1.6-41/terra/src/geos_methods.cpp | 111 terra-1.6-41/terra/src/geos_spat.h | 48 terra-1.6-41/terra/src/geosphere.cpp | 16 terra-1.6-41/terra/src/memory.cpp | 12 terra-1.6-41/terra/src/movingWindow.cpp |only terra-1.6-41/terra/src/raster_methods.cpp | 953 +++- terra-1.6-41/terra/src/raster_stats.cpp | 5 terra-1.6-41/terra/src/rasterize.cpp | 79 terra-1.6-41/terra/src/read_gdal.cpp | 150 terra-1.6-41/terra/src/read_ogr.cpp | 15 terra-1.6-41/terra/src/sample.cpp | 16 terra-1.6-41/terra/src/sort.h |only terra-1.6-41/terra/src/spatBase.cpp | 72 terra-1.6-41/terra/src/spatBase.h | 33 terra-1.6-41/terra/src/spatDataframe.h | 7 terra-1.6-41/terra/src/spatFactor.cpp | 4 terra-1.6-41/terra/src/spatGraph.h |only terra-1.6-41/terra/src/spatRaster.cpp | 223 - terra-1.6-41/terra/src/spatRaster.h | 78 terra-1.6-41/terra/src/spatRasterMultiple.cpp |only terra-1.6-41/terra/src/spatRasterMultiple.h | 308 - terra-1.6-41/terra/src/spatSources.cpp | 28 terra-1.6-41/terra/src/spatTime.cpp | 11 terra-1.6-41/terra/src/spatTime.h | 2 terra-1.6-41/terra/src/spatVector.cpp | 52 terra-1.6-41/terra/src/spatVector.h | 31 terra-1.6-41/terra/src/spatVector2.h |only terra-1.6-41/terra/src/vector_methods.cpp | 138 terra-1.6-41/terra/src/write.cpp | 117 terra-1.6-41/terra/src/write_gdal.cpp | 117 229 files changed, 8156 insertions(+), 4850 deletions(-)
Title: Steve's Toy Data for Teaching About a Variety of Methodological,
Social, and Political Topics
Description: This is a collection of various kinds of data with broad uses for teaching.
My students, and academics like me who teach the same topics I teach, should find
this useful if their teaching workflow is also built around the R programming
language. The applications are multiple but mostly cluster on topics of statistical
methodology, international relations, and political economy.
Author: Steve Miller [aut, cre]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevedata versions 0.7.0 dated 2022-04-02 and 0.8.0 dated 2022-11-18
DESCRIPTION | 8 - MD5 | 169 ++++++++++++++++++++------------------- NEWS.md | 16 +++ R/rd-fakeHappiness.R |only R/rd-inglehart03.R |only R/rd-pwt_sample.R | 13 ++- R/rd-sweden_counties.R |only README.md | 176 ++--------------------------------------- data/Arca.rda |binary data/CFT15.rda |binary data/CP77.rda |binary data/DJIA.rda |binary data/DST.rda |binary data/Datasaurus.rda |binary data/Dee04.rda |binary data/ESS9GB.rda |binary data/ESSBE5.rda |binary data/Guber99.rda |binary data/LOTI.rda |binary data/LTPT.rda |binary data/LTWT.rda |binary data/Newhouse77.rda |binary data/ODGI.rda |binary data/Presidents.rda |binary data/SBCD.rda |binary data/SCP16.rda |binary data/TV16.rda |binary data/af_crime93.rda |binary data/aluminum_premiums.rda |binary data/anes_partytherms.rda |binary data/anes_prochoice.rda |binary data/anes_vote84.rda |binary data/arcticseaice.rda |binary data/arg_tariff.rda |binary data/asn_stats.rda |binary data/clemson_temps.rda |binary data/co2emissions.rda |binary data/coffee_imports.rda |binary data/coffee_price.rda |binary data/eight_schools.rda |binary data/election_turnout.rda |binary data/eq_passengercars.rda |binary data/eustates.rda |binary data/fakeAPI.rda |binary data/fakeHappiness.rda |only data/fakeLogit.rda |binary data/fakeTSCS.rda |binary data/fakeTSD.rda |binary data/ghp100k.rda |binary data/gss_abortion.rda |binary data/gss_spending.rda |binary data/gss_wages.rda |binary data/illiteracy30.rda |binary data/inglehart03.rda |only data/min_wage.rda |binary data/mm_mlda.rda |binary data/mm_nhis.rda |binary data/mm_randhie.rda |binary data/mvprod.rda |binary data/nesarc_drinkspd.rda |binary data/pwt_sample.rda |binary data/quartets.rda |binary data/recessions.rda |binary data/sealevels.rda |binary data/so2concentrations.rda |binary data/steves_clothes.rda |binary data/sugar_price.rda |binary data/sweden_counties.rda |only data/thatcher_approval.rda |binary data/therms.rda |binary data/turnips.rda |binary data/ukg_eeri.rda |binary data/uniondensity.rda |binary data/usa_chn_gdp_forecasts.rda |binary data/usa_computers.rda |binary data/usa_migration.rda |binary data/usa_states.rda |binary data/usa_tradegdp.rda |binary data/voteincome.rda |binary data/wvs_ccodes.rda |binary data/wvs_immig.rda |binary data/wvs_justifbribe.rda |binary data/wvs_usa_abortion.rda |binary data/wvs_usa_educat.rda |binary data/wvs_usa_regions.rda |binary data/yugo_sales.rda |binary man/fakeHappiness.Rd |only man/inglehart03.Rd |only man/pwt_sample.Rd | 13 ++- man/sweden_counties.Rd |only 90 files changed, 136 insertions(+), 259 deletions(-)
Title: Download or Upload 'Socrata' Data Sets
Description: Provides easier interaction with
'Socrata' open data portals <https://dev.socrata.com>.
Users can provide a 'Socrata' data set resource URL,
or a 'Socrata' Open Data API (SoDA) web query,
or a 'Socrata' "human-friendly" URL,
returns an R data frame. Converts dates to 'POSIX'
format and manages throttling by 'Socrata'.
Users can upload data to 'Socrata' portals directly
from R.
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., Gene Leynes, Nick Lucius, John Malc, Mark Silverberg, and Peter Schmeideskamp
Maintainer: "Tom Schenk Jr." <developers@cityofchicago.org>
Diff between RSocrata versions 1.7.11-2 dated 2021-09-14 and 1.7.12-4 dated 2022-11-18
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- README.md | 2 +- tests/testthat/test-all.R | 2 ++ 4 files changed, 11 insertions(+), 9 deletions(-)
Title: Download 'Qualtrics' Survey Data
Description: Provides functions to access survey results directly into R
using the 'Qualtrics' API. 'Qualtrics'
<https://www.qualtrics.com/about/> is an online survey and data
collection software platform. See <https://api.qualtrics.com/> for
more information about the 'Qualtrics' API. This package is
community-maintained and is not officially supported by 'Qualtrics'.
Author: Jasper Ginn [aut],
Jackson Curtis [ctb],
Shaun Jackson [ctb],
Samuel Kaminsky [ctb],
Eric Knudsen [ctb],
Joseph O'Brien [aut],
Daniel Seneca [ctb],
Julia Silge [aut, cre] ,
Phoebe Wong [ctb]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between qualtRics versions 3.1.6 dated 2022-06-06 and 3.1.7 dated 2022-11-18
qualtRics-3.1.6/qualtRics/R/assertions.R |only qualtRics-3.1.6/qualtRics/man/check_params.Rd |only qualtRics-3.1.6/qualtRics/man/download_qualtrics_export.Rd |only qualtRics-3.1.7/qualtRics/DESCRIPTION | 16 qualtRics-3.1.7/qualtRics/MD5 | 111 - qualtRics-3.1.7/qualtRics/NAMESPACE | 16 qualtRics-3.1.7/qualtRics/NEWS.md | 8 qualtRics-3.1.7/qualtRics/R/all_mailinglists.R | 3 qualtRics-3.1.7/qualtRics/R/all_surveys.R | 14 qualtRics-3.1.7/qualtRics/R/checks.R |only qualtRics-3.1.7/qualtRics/R/column_map.R | 3 qualtRics-3.1.7/qualtRics/R/fetch_description.R | 53 qualtRics-3.1.7/qualtRics/R/fetch_distribution_history.R | 7 qualtRics-3.1.7/qualtRics/R/fetch_distributions.R | 7 qualtRics-3.1.7/qualtRics/R/fetch_id.R | 81 qualtRics-3.1.7/qualtRics/R/fetch_mailinglist.R | 4 qualtRics-3.1.7/qualtRics/R/fetch_survey.R | 484 +++-- qualtRics-3.1.7/qualtRics/R/list_distribution_links.R | 5 qualtRics-3.1.7/qualtRics/R/metadata.R | 90 - qualtRics-3.1.7/qualtRics/R/qualtrics_api_credentials.R | 97 - qualtRics-3.1.7/qualtRics/R/read_survey.R | 40 qualtRics-3.1.7/qualtRics/R/survey_questions.R | 3 qualtRics-3.1.7/qualtRics/R/utils.R | 787 +++++---- qualtRics-3.1.7/qualtRics/build/vignette.rds |binary qualtRics-3.1.7/qualtRics/inst/doc/qualtRics.html | 128 - qualtRics-3.1.7/qualtRics/man/check_credentials.Rd |only qualtRics-3.1.7/qualtRics/man/check_existing_download.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_base_url.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_col_types.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_convert_label_breakouts.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_datetime.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_elements.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_fetch_id_data.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_file_name.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_get.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_include_embedded.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_include_metadata.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_include_questions.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_isboolean.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_ischaracter.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_isintegerish.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_isstring.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_limit.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_save_dir.Rd |only qualtRics-3.1.7/qualtRics/man/checkarg_time_zone.Rd |only qualtRics-3.1.7/qualtRics/man/construct_header.Rd | 3 qualtRics-3.1.7/qualtRics/man/create_raw_payload.Rd | 41 qualtRics-3.1.7/qualtRics/man/export_responses_filedownload.Rd |only qualtRics-3.1.7/qualtRics/man/export_responses_init.Rd |only qualtRics-3.1.7/qualtRics/man/export_responses_progress.Rd |only qualtRics-3.1.7/qualtRics/man/export_responses_request.Rd |only qualtRics-3.1.7/qualtRics/man/fetch_id.Rd | 11 qualtRics-3.1.7/qualtRics/man/fetch_survey.Rd | 249 ++- qualtRics-3.1.7/qualtRics/man/metadata.Rd | 15 qualtRics-3.1.7/qualtRics/man/qualtrics_api_credentials.Rd | 6 qualtRics-3.1.7/qualtRics/man/qualtrics_api_request.Rd | 13 qualtRics-3.1.7/qualtRics/man/qualtrics_response_codes.Rd | 6 qualtRics-3.1.7/qualtRics/tests/fixtures/fetch_distributions.yml | 3 qualtRics-3.1.7/qualtRics/tests/fixtures/fetch_survey_custom.yml | 814 ++++++++-- qualtRics-3.1.7/qualtRics/tests/fixtures/fetch_survey_exclude.yml |only qualtRics-3.1.7/qualtRics/tests/testthat/test-all-surveys.R | 2 qualtRics-3.1.7/qualtRics/tests/testthat/test-api-credentials.R | 43 qualtRics-3.1.7/qualtRics/tests/testthat/test-check-params.R | 216 +- qualtRics-3.1.7/qualtRics/tests/testthat/test-download-qualtrics-export.R | 135 - qualtRics-3.1.7/qualtRics/tests/testthat/test-fetch-description.R | 6 qualtRics-3.1.7/qualtRics/tests/testthat/test-fetch-id.R | 8 qualtRics-3.1.7/qualtRics/tests/testthat/test-fetch-survey.R | 92 - qualtRics-3.1.7/qualtRics/tests/testthat/test-generate-url.R | 2 qualtRics-3.1.7/qualtRics/tests/testthat/test-metadata.R | 8 qualtRics-3.1.7/qualtRics/tests/testthat/test-qualtrics-api-request.R | 27 qualtRics-3.1.7/qualtRics/tests/testthat/test-survey-questions.R | 2 71 files changed, 2241 insertions(+), 1418 deletions(-)
Title: Characterizing and Filtering Species Occurrence Data
Description: Perform multiple tests for potential errors in species occurrence data and filter, and filter data according to users specifications.
Author: Josep M Serra-Diaz [aut, cre],
Cory Merow [aut, ctb] ,
Jeremy Borderieux [aut, ctb] ,
Brian Maitner [aut, ctb]
Maintainer: Josep M Serra-Diaz <pep.agroparistech@gmail.com>
Diff between occTest versions 0.1 dated 2022-10-10 and 0.1.1 dated 2022-11-18
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/occTest_PseudoVignette.Rmd | 4 ++-- inst/doc/occTest_PseudoVignette.html | 6 +++--- vignettes/occTest_PseudoVignette.Rmd | 4 ++-- 6 files changed, 20 insertions(+), 20 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.40 dated 2022-08-24 and 1.41 dated 2022-11-18
DESCRIPTION | 24 +-- MD5 | 72 +++++------ R/block.R | 6 R/defaults.R | 1 R/hooks-md.R | 8 + R/pandoc.R | 2 R/parser.R | 8 - R/pattern.R | 3 R/rocco.R | 4 R/table.R | 39 ++++- R/template.R | 2 R/utils-conversion.R | 14 +- R/utils-rd2html.R | 6 R/utils-vignettes.R | 4 R/utils.R | 31 +++- build/vignette.rds |binary inst/doc/datatables.R | 2 inst/doc/datatables.Rmd | 2 inst/doc/datatables.html | 260 +++++++++------------------------------ inst/doc/docco-classic.html | 68 ++++------ inst/doc/docco-linear.R | 2 inst/doc/docco-linear.Rmd | 2 inst/doc/docco-linear.html | 56 ++------ inst/doc/knit_expand.html | 281 ++++++++++--------------------------------- inst/doc/knit_print.html | 123 +++++++++--------- inst/doc/knitr-intro.html | 139 ++++++++++----------- inst/doc/knitr-markdown.R | 2 inst/doc/knitr-markdown.Rmd | 4 inst/doc/knitr-markdown.html | 267 ++++++++++------------------------------ inst/doc/knitr-refcard.pdf |binary man/knit2html.Rd | 8 - man/output_type.Rd | 8 - man/rocco.Rd | 2 tests/testit/test-table.R | 6 vignettes/datatables.Rmd | 2 vignettes/docco-linear.Rmd | 2 vignettes/knitr-markdown.Rmd | 4 37 files changed, 540 insertions(+), 924 deletions(-)
Title: Inhomogeneous K- And Pair Correlation Functions Using Global
Estimators
Description: Second-order summary statistics K- and pair-correlation functions describe
interactions in point pattern data. This package provides computations to estimate those
statistics on inhomogeneous point processes, using the methods of
in T Shaw, J Møller, R Waagepetersen, 2020 <arXiv:2004.00527>.
Author: Thomas Shaw [aut, cre],
Ege Rubak [ctb],
Adrian Baddeley [ctb],
Rolf Turner [ctb]
Maintainer: Thomas Shaw <shawtr@umich.edu>
Diff between globalKinhom versions 0.1.4 dated 2022-02-25 and 0.1.5 dated 2022-11-18
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 2 +- build/partial.rdb |binary man/globalKinhom-package.Rd | 6 +++--- src/rho_rho_excess.c | 30 +++++++++++++++++------------- 6 files changed, 32 insertions(+), 28 deletions(-)
Title: A Procedure to Clean, Decompose and Aggregate Timeseries
Description: Clean, decompose and aggregate univariate time series following the procedure "Cyclic/trend decomposition using bin interpolation" and the Logbox method for flagging outliers, both detailed in Ritter, F.: Technical note: A procedure to clean, decompose and aggregate time series, Hydrol. Earth Syst. Sci. Discuss. [preprint], <doi:10.5194/hess-2021-609>, in review.
Author: Francois Ritter [cre, aut]
Maintainer: Francois Ritter <ritter.francois@gmail.com>
Diff between ctbi versions 1.0.1 dated 2022-03-09 and 2.0.4 dated 2022-11-18
ctbi-1.0.1/ctbi/R/ctbi.outliers.R |only ctbi-1.0.1/ctbi/man/ctbi.outliers.Rd |only ctbi-2.0.4/ctbi/DESCRIPTION | 10 - ctbi-2.0.4/ctbi/MD5 | 31 +-- ctbi-2.0.4/ctbi/NAMESPACE | 2 ctbi-2.0.4/ctbi/NEWS.md | 39 +++- ctbi-2.0.4/ctbi/R/ctbi.R | 226 ++++++++++++++++--------- ctbi-2.0.4/ctbi/R/ctbi.cycle.R | 6 ctbi-2.0.4/ctbi/R/ctbi.outlier.R |only ctbi-2.0.4/ctbi/R/ctbi.plot.R | 3 ctbi-2.0.4/ctbi/R/ctbi.timeseries.R | 9 ctbi-2.0.4/ctbi/README.md | 32 ++- ctbi-2.0.4/ctbi/inst |only ctbi-2.0.4/ctbi/man/ctbi.Rd | 58 +++--- ctbi-2.0.4/ctbi/man/ctbi.outlier.Rd |only ctbi-2.0.4/ctbi/man/ctbi.plot.Rd | 2 ctbi-2.0.4/ctbi/man/ctbi.timeseries.Rd | 4 ctbi-2.0.4/ctbi/tests/testthat/Rplots.pdf |binary ctbi-2.0.4/ctbi/tests/testthat/test_20211229.R | 29 --- 19 files changed, 264 insertions(+), 187 deletions(-)
Title: Set of Tools to Compute Various Climate Indices
Description: Set of tools to compute metrics and indices for climate analysis.
The package provides functions to compute extreme indices, evaluate the
agreement between models and combine theses models into an ensemble. Multi-model
time series of climate indices can be computed either after averaging the 2-D
fields from different models provided they share a common grid or by combining
time series computed on the model native grid. Indices can be assigned weights
and/or combined to construct new indices.
Author: BSC-CNS [aut, cph],
Nuria Perez-Zanon [aut] ,
An-Chi Ho [cre, ctb],
Nicolau Manubens [ctb],
Alasdair Hunter [aut],
Louis-Philippe Caron [ctb],
Eva Rifa [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between ClimProjDiags versions 0.1.3 dated 2021-11-03 and 0.2.0 dated 2022-11-18
ClimProjDiags-0.1.3/ClimProjDiags/tests |only ClimProjDiags-0.2.0/ClimProjDiags/DESCRIPTION | 26 ++--- ClimProjDiags-0.2.0/ClimProjDiags/MD5 | 49 +++++----- ClimProjDiags-0.2.0/ClimProjDiags/NAMESPACE | 1 ClimProjDiags-0.2.0/ClimProjDiags/NEWS.md |only ClimProjDiags-0.2.0/ClimProjDiags/R/Extremes.R | 14 +- ClimProjDiags-0.2.0/ClimProjDiags/R/ShiftLon.R |only ClimProjDiags-0.2.0/ClimProjDiags/R/Subset.R | 76 +++++++++++++--- ClimProjDiags-0.2.0/ClimProjDiags/R/Threshold.R | 3 ClimProjDiags-0.2.0/ClimProjDiags/R/WeightedMean.R | 5 - ClimProjDiags-0.2.0/ClimProjDiags/build/vignette.rds |binary ClimProjDiags-0.2.0/ClimProjDiags/man/AnoAgree.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/ArrayToList.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/Climdex.Rd | 13 ++ ClimProjDiags-0.2.0/ClimProjDiags/man/CombineIndices.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/DTRIndicator.Rd | 13 ++ ClimProjDiags-0.2.0/ClimProjDiags/man/DTRRef.Rd | 13 ++ ClimProjDiags-0.2.0/ClimProjDiags/man/DailyAno.Rd | 4 ClimProjDiags-0.2.0/ClimProjDiags/man/Extremes.Rd | 30 ++++-- ClimProjDiags-0.2.0/ClimProjDiags/man/Lon2Index.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/SeasonSelect.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/SelBox.Rd | 1 ClimProjDiags-0.2.0/ClimProjDiags/man/ShiftLon.Rd |only ClimProjDiags-0.2.0/ClimProjDiags/man/Subset.Rd | 39 ++++++-- ClimProjDiags-0.2.0/ClimProjDiags/man/Threshold.Rd | 13 ++ ClimProjDiags-0.2.0/ClimProjDiags/man/WaveDuration.Rd | 13 ++ ClimProjDiags-0.2.0/ClimProjDiags/man/WeightedMean.Rd | 12 +- 27 files changed, 223 insertions(+), 107 deletions(-)
Title: Bounded Time Series Regression
Description: Simulate, estimate and forecast a wide range of regression based dynamic models for bounded time series, covering the most commonly applied models in the literature. The main calculations are done in 'FORTRAN', which translates into very fast algorithms. The main references are
Bayer et al. (2017) <doi:10.1016/j.jhydrol.2017.10.006>,
Pumi et al. (2019) <doi:10.1016/j.jspi.2018.10.001>,
Pumi et al. (2021) <doi:10.1111/sjos.12439> and
Pumi et al. (2022) <arXiv:2211.02097>.
Author: Taiane Schaedler Prass [aut, cre, com]
,
Guilherme Pumi [ctb, aut] ,
Fabio Mariano Bayer [ctb] ,
Jack Joseph Dongarra [ctb],
Cleve Moler [ctb],
Gilbert Wright Stewart [ctb],
Ciyou Zhu [ctb],
Richard H. Byrd [ctb],
Jorge Nocedal [ctb],
Jose Luis Moral [...truncated...]
Maintainer: Taiane Schaedler Prass <taianeprass@gmail.com>
Diff between BTSR versions 0.1.1 dated 2022-11-13 and 0.1.2 dated 2022-11-18
BTSR-0.1.1/BTSR/NEWS.md |only BTSR-0.1.1/BTSR/README.md |only BTSR-0.1.1/BTSR/src/00_lb.f90 |only BTSR-0.1.1/BTSR/src/BTSR_init.c |only BTSR-0.1.2/BTSR/DESCRIPTION | 8 - BTSR-0.1.2/BTSR/MD5 | 20 +- BTSR-0.1.2/BTSR/inst/NEWS.md |only BTSR-0.1.2/BTSR/inst/README.md |only BTSR-0.1.2/BTSR/inst/copyright.R | 6 BTSR-0.1.2/BTSR/src/00_lbfgsb.f90 | 281 +++++++++++++++++++++++++++++++++++++- BTSR-0.1.2/BTSR/src/01_Nelder.f90 | 4 BTSR-0.1.2/BTSR/src/02_base.f90 | 1 BTSR-0.1.2/BTSR/src/Makevars | 17 ++ BTSR-0.1.2/BTSR/src/Makevars.win | 17 ++ 14 files changed, 326 insertions(+), 28 deletions(-)
Title: A Collection of Statistical Tools for Biologists
Description: Contains functions from: Aho, K. (2014) Foundational and Applied Statistics for Biologists using R. CRC/Taylor and Francis, Boca Raton, FL, ISBN: 978-1-4398-7338-0.
Author: Ken Aho
Maintainer: Ken Aho <kenaho1@gmail.com>
Diff between asbio versions 1.8-2 dated 2022-08-25 and 1.8-3 dated 2022-11-18
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary data/potato.rda |binary inst/doc/ranef.cov.pdf |binary inst/doc/simpson.pdf |binary man/potato.rd | 5 +++-- 7 files changed, 13 insertions(+), 12 deletions(-)
Title: A Wrapper of the 'react-select' Library
Description: Provides a select control widget for 'Shiny'. It is easily
customizable, and one can easily use HTML in the items and KaTeX to
type mathematics.
Author: Stephane Laurent [aut, cre],
Jed Watson [cph] ,
Clauderic Demers [cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between shinySelect versions 1.2.0 dated 2022-10-21 and 1.3.0 dated 2022-11-18
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/selectControl.R | 4 +++- inst/www/shinySelect/selectControl/selectControl.js | 2 +- inst/www/shinySelect/selectControl/selectControl.js.map | 2 +- 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Easy Access to Model Information for Various Model Objects
Description: A tool to provide an easy, intuitive and consistent
access to information contained in various R models, like model
formulas, model terms, information about random effects, data that was
used to fit the model or data from response variables. 'insight'
mainly revolves around two types of functions: Functions that find
(the names of) information, starting with 'find_', and functions that
get the underlying data, starting with 'get_'. The package has a
consistent syntax and works with many different model objects, where
otherwise functions to access these information are missing.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut] ,
Vincent Arel-Bundock [aut, ctb]
,
Alex Hayes [rev] ,
Grant McDermott [ [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between insight versions 0.18.6 dated 2022-10-23 and 0.18.7 dated 2022-11-18
DESCRIPTION | 8 MD5 | 130 ++++++------- NAMESPACE | 1 NEWS.md | 29 ++- R/clean_parameters.R | 4 R/compute_variances.R | 2 R/ellipsis_info.R | 22 +- R/export_table.R | 6 R/find_parameters_mixed.R | 2 R/find_predictors.R | 5 R/format_message.R | 8 R/format_p.R | 4 R/format_table.R | 38 ++- R/format_value.R | 5 R/get_data.R | 3 R/get_datagrid.R | 119 ++++++------ R/get_df.R | 16 - R/get_df_residual.r | 5 R/get_nested_lme_varcorr.R | 8 R/get_predicted.R | 17 - R/get_predicted_args.R | 31 ++- R/get_predicted_ci.R | 4 R/get_predicted_ci_zeroinflated.R | 3 R/get_predicted_methods.R | 2 R/get_predicted_mixed.R | 25 +- R/get_predicted_ordinal.R | 2 R/get_sigma.R | 3 R/get_statistic.R | 6 R/get_varcov.R | 3 R/get_weights.R | 2 R/helper_functions.R | 27 +- R/n_parameters.R | 3 R/utilities.R | 37 +++ R/utils_get_data.R | 9 R/utils_object.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/display.html | 298 ++++++++++++++++--------------- man/format_message.Rd | 8 man/get_datagrid.Rd | 2 man/get_predicted.Rd | 10 - man/trim_ws.Rd | 29 ++- tests/testthat/helper-requiet.R | 4 tests/testthat/test-BayesFactorBF.R | 5 tests/testthat/test-betareg.R | 4 tests/testthat/test-brms.R | 32 +-- tests/testthat/test-ellipses_info.R | 13 + tests/testthat/test-find_smooth.R | 2 tests/testthat/test-format_table.R | 1 tests/testthat/test-gam.R | 22 +- tests/testthat/test-gamlss.R | 2 tests/testthat/test-get_data.R | 10 - tests/testthat/test-get_datagrid.R | 22 ++ tests/testthat/test-get_predicted-clm.R | 2 tests/testthat/test-get_predicted-iv.R | 4 tests/testthat/test-get_predicted.R | 145 +++++++-------- tests/testthat/test-glmmTMB.R | 4 tests/testthat/test-htest.R | 1 tests/testthat/test-lme.R | 7 tests/testthat/test-lmer.R | 6 tests/testthat/test-logitr.R | 3 tests/testthat/test-metaBMA.R | 4 tests/testthat/test-object_has_helpers.R | 2 tests/testthat/test-polr.R | 2 tests/testthat/test-rstanarm.R | 2 tests/testthat/test-utilities.R | 45 ++++ 66 files changed, 740 insertions(+), 542 deletions(-)
Title: Simulation and Likelihood Calculation of Phylogenetic
Comparative Models
Description: Phylogenetic comparative methods represent models of continuous trait
data associated with the tips of a phylogenetic tree. Examples of such models
are Gaussian continuous time branching stochastic processes such as Brownian
motion (BM) and Ornstein-Uhlenbeck (OU) processes, which regard the data at the
tips of the tree as an observed (final) state of a Markov process starting from
an initial state at the root and evolving along the branches of the tree. The
PCMBase R package provides a general framework for manipulating such models.
This framework consists of an application programming interface for specifying
data and model parameters, and efficient algorithms for simulating trait evolution
under a model and calculating the likelihood of model parameters for an assumed
model and trait data. The package implements a growing collection of models,
which currently includes BM, OU, BM/OU with jumps, two-speed OU as well as mixed
Gaussian models, in which different types of the above model [...truncated...]
Author: Venelin Mitov [aut, cre, cph] ,
Krzysztof Bartoszek [ctb],
Georgios Asimomitis [ctb],
Tanja Stadler [ths]
Maintainer: Venelin Mitov <vmitov@gmail.com>
Diff between PCMBase versions 1.2.12 dated 2021-06-07 and 1.2.13 dated 2022-11-18
DESCRIPTION | 6 ++-- MD5 | 41 ++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 5 ++- R/PCM.R | 3 ++ R/PCMParam.R | 21 ++++++++++++++ README.md | 2 - inst/doc/PCMBase.R | 16 +++++------ inst/doc/PCMBase.Rmd | 18 ++++++------ inst/doc/PCMBase.html | 60 ++++++++++++++++++++++-------------------- inst/doc/PCMCreateModel.R | 16 +++++------ inst/doc/PCMCreateModel.Rmd | 18 ++++++------ inst/doc/PCMCreateModel.html | 16 +++++++---- inst/doc/PCMParam.html | 4 +- inst/doc/PCMTracePruning.R | 40 ++++++++++++++++------------ inst/doc/PCMTracePruning.Rmd | 40 ++++++++++++++++------------ inst/doc/PCMTracePruning.html | 4 +- man/PCMOptions.Rd | 2 + vignettes/PCMBMkappa.zip |only vignettes/PCMBase.Rmd | 18 ++++++------ vignettes/PCMCreateModel.Rmd | 18 ++++++------ vignettes/PCMTracePruning.Rmd | 40 ++++++++++++++++------------ 22 files changed, 225 insertions(+), 164 deletions(-)
Title: Motif-Based Spectral Clustering of Weighted Directed Networks
Description: Tools for spectral clustering of weighted directed networks using motif
adjacency matrices. Methods perform well on large and sparse networks, and
random sampling methods for generating weighted directed networks are also
provided. Based on methodology detailed in Underwood, Elliott and Cucuringu
(2020) <arXiv:2004.01293>.
Author: William George Underwood [aut, cre]
Maintainer: William George Underwood <wgu2@princeton.edu>
Diff between motifcluster versions 0.2.2 dated 2022-08-15 and 0.2.3 dated 2022-11-18
motifcluster-0.2.2/motifcluster/vignettes/auto |only motifcluster-0.2.3/motifcluster/DESCRIPTION | 6 - motifcluster-0.2.3/motifcluster/MD5 | 13 +-- motifcluster-0.2.3/motifcluster/NEWS.md | 5 + motifcluster-0.2.3/motifcluster/R/clustering.R | 4 - motifcluster-0.2.3/motifcluster/build/vignette.rds |binary motifcluster-0.2.3/motifcluster/inst/doc/motifcluster_vignette.pdf |binary motifcluster-0.2.3/motifcluster/tests/testthat/test_clustering.R | 33 ++++++++++ 8 files changed, 49 insertions(+), 12 deletions(-)
Title: Meta Analysis of Factor Analysis Based on CO-Occurrence Matrices
Description: Provide a series of functions to conduct a meta analysis of
factor analysis based on co-occurrence matrices. The tool can be used to
solve the factor structure (i.e. inner structure of a construct, or scale)
debate in several disciplines, such as psychology, psychiatry, management,
education so on. References: Shafer (2005) <doi:10.1037/1040-3590.17.3.324>;
Shafer (2006) <doi:10.1002/jclp.20213>; Loeber and Schmaling (1985) <doi:10.1007/BF00910652>.
Author: Xijian Zheng [aut, cre],
Huiyong Fan [aut]
Maintainer: Xijian Zheng <psydreammer@foxmail.com>
Diff between coefa versions 1.0.1 dated 2022-09-26 and 1.0.2 dated 2022-11-18
DESCRIPTION | 8 - MD5 | 34 +++---- NAMESPACE | 1 NEWS.md | 8 + R/coefa_acm.R | 22 +++- R/coefa_fa.R | 5 - R/coefa_fixdia.R |only R/coefa_gcm.R | 4 R/coefa_summary.R | 4 README.md | 16 +-- inst/WORDLIST | 6 + inst/doc/Introduction.R | 3 inst/doc/Introduction.Rmd | 23 +++- inst/doc/Introduction.html | 210 ++++++++++++++++++++++++++++++--------------- man/coefa_acm.Rd | 10 +- man/coefa_fixdia.Rd |only man/coefa_gcm.Rd | 4 man/coefa_summary.Rd | 4 vignettes/Introduction.Rmd | 23 +++- 19 files changed, 255 insertions(+), 130 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.5.0 dated 2022-10-14 and 1.6.0 dated 2022-11-18
ggblanket-1.5.0/ggblanket/R/add_tooltip_text.R |only ggblanket-1.5.0/ggblanket/man/add_tooltip_text.Rd |only ggblanket-1.5.0/ggblanket/man/figures/ggplotly_screenshot.png |only ggblanket-1.6.0/ggblanket/DESCRIPTION | 17 ggblanket-1.6.0/ggblanket/MD5 | 160 - ggblanket-1.6.0/ggblanket/NAMESPACE | 4 ggblanket-1.6.0/ggblanket/NEWS.md | 11 ggblanket-1.6.0/ggblanket/R/add_tooltip.R |only ggblanket-1.6.0/ggblanket/R/gg_area.R | 811 +++-- ggblanket-1.6.0/ggblanket/R/gg_bar.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_bin2d.R | 1072 ++++--- ggblanket-1.6.0/ggblanket/R/gg_blank.R | 1381 ++++++---- ggblanket-1.6.0/ggblanket/R/gg_boxplot.R | 1005 ++++--- ggblanket-1.6.0/ggblanket/R/gg_col.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_crossbar.R | 840 +++--- ggblanket-1.6.0/ggblanket/R/gg_density.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_errorbar.R | 824 +++-- ggblanket-1.6.0/ggblanket/R/gg_freqpoly.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_function.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_hex.R | 1078 ++++--- ggblanket-1.6.0/ggblanket/R/gg_histogram.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_jitter.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_label.R | 810 +++-- ggblanket-1.6.0/ggblanket/R/gg_line.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_linerange.R | 824 +++-- ggblanket-1.6.0/ggblanket/R/gg_path.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_point.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_pointrange.R | 824 +++-- ggblanket-1.6.0/ggblanket/R/gg_polygon.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_qq.R | 810 +++-- ggblanket-1.6.0/ggblanket/R/gg_raster.R | 811 +++-- ggblanket-1.6.0/ggblanket/R/gg_rect.R | 824 +++-- ggblanket-1.6.0/ggblanket/R/gg_ribbon.R | 829 +++--- ggblanket-1.6.0/ggblanket/R/gg_segment.R | 826 +++-- ggblanket-1.6.0/ggblanket/R/gg_sf.R | 279 +- ggblanket-1.6.0/ggblanket/R/gg_smooth.R | 809 +++-- ggblanket-1.6.0/ggblanket/R/gg_step.R | 807 +++-- ggblanket-1.6.0/ggblanket/R/gg_text.R | 808 +++-- ggblanket-1.6.0/ggblanket/R/gg_theme.R | 17 ggblanket-1.6.0/ggblanket/R/gg_tile.R | 807 +++-- ggblanket-1.6.0/ggblanket/R/gg_violin.R | 807 +++-- ggblanket-1.6.0/ggblanket/R/ggblanket-package.R | 2 ggblanket-1.6.0/ggblanket/README.md | 7 ggblanket-1.6.0/ggblanket/inst/doc/ggblanket.R | 202 - ggblanket-1.6.0/ggblanket/inst/doc/ggblanket.Rmd | 332 +- ggblanket-1.6.0/ggblanket/inst/doc/ggblanket.html | 515 ++- ggblanket-1.6.0/ggblanket/man/add_tooltip.Rd |only ggblanket-1.6.0/ggblanket/man/figures/README-unnamed-chunk-2-1.png |binary ggblanket-1.6.0/ggblanket/man/figures/README-unnamed-chunk-3-1.png |binary ggblanket-1.6.0/ggblanket/man/figures/ggiraph_screenshot.png |only ggblanket-1.6.0/ggblanket/man/gg_area.Rd | 29 ggblanket-1.6.0/ggblanket/man/gg_bar.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_bin2d.Rd | 30 ggblanket-1.6.0/ggblanket/man/gg_blank.Rd | 69 ggblanket-1.6.0/ggblanket/man/gg_boxplot.Rd | 55 ggblanket-1.6.0/ggblanket/man/gg_col.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_crossbar.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_density.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_errorbar.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_freqpoly.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_function.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_hex.Rd | 36 ggblanket-1.6.0/ggblanket/man/gg_histogram.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_jitter.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_label.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_line.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_linerange.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_path.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_point.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_pointrange.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_polygon.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_qq.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_raster.Rd | 29 ggblanket-1.6.0/ggblanket/man/gg_rect.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_ribbon.Rd | 32 ggblanket-1.6.0/ggblanket/man/gg_segment.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_sf.Rd | 37 ggblanket-1.6.0/ggblanket/man/gg_smooth.Rd | 27 ggblanket-1.6.0/ggblanket/man/gg_step.Rd | 25 ggblanket-1.6.0/ggblanket/man/gg_text.Rd | 25 ggblanket-1.6.0/ggblanket/man/gg_theme.Rd | 2 ggblanket-1.6.0/ggblanket/man/gg_tile.Rd | 25 ggblanket-1.6.0/ggblanket/man/gg_violin.Rd | 25 ggblanket-1.6.0/ggblanket/vignettes/ggblanket.Rmd | 332 +- 84 files changed, 15863 insertions(+), 13480 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-03 4.0-3