Title: Construction of Genetic Maps in Experimental Crosses
Description: Analysis of molecular marker data from model (backcrosses,
F2 and recombinant inbred lines) and non-model systems (i. e.
outcrossing species). For the later, it allows statistical
analysis by simultaneously estimating linkage and linkage
phases (genetic map construction) according to Wu et al. (2002)
<doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint
approaches using hidden Markov models.
Author: Gabriel Margarido [aut],
Marcelo Mollinari [aut],
Cristiane Taniguti [ctb, cre],
Getulio Ferreira [ctb],
Rodrigo Amadeu [ctb],
Karl Broman [ctb],
Katharine Preedy [ctb, cph] ,
Bastian Schiffthaler [ctb, cph] ,
Augusto Garcia [aut, ctb]
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Diff between onemap versions 2.8.2 dated 2022-02-11 and 3.0.0 dated 2022-11-25
onemap-2.8.2/onemap/R/RcppExports.R |only onemap-2.8.2/onemap/R/add_marker.R |only onemap-2.8.2/onemap/R/parmap.R |only onemap-2.8.2/onemap/data/LG3_comp.RData |only onemap-2.8.2/onemap/inst/extdata/vcf_example_bc.vcf.gz |only onemap-2.8.2/onemap/inst/extdata/vcf_example_riself.raw |only onemap-2.8.2/onemap/inst/extdata/vcf_example_riself.vcf.gz |only onemap-2.8.2/onemap/man/LG3_comp.Rd |only onemap-2.8.2/onemap/man/est_hmm_out.Rd |only onemap-2.8.2/onemap/man/parmap.Rd |only onemap-2.8.2/onemap/src/RcppExports.cpp |only onemap-2.8.2/onemap/vignettes/f2_img/plot.simParallel.jpg |only onemap-3.0.0/onemap/DESCRIPTION | 9 onemap-3.0.0/onemap/MD5 | 139 onemap-3.0.0/onemap/NAMESPACE | 310 - onemap-3.0.0/onemap/R/combine_onemap.R | 4 onemap-3.0.0/onemap/R/compare.R | 11 onemap-3.0.0/onemap/R/cpp_utils.R | 124 onemap-3.0.0/onemap/R/create_depths_profile.R | 10 onemap-3.0.0/onemap/R/create_probs.R | 2 onemap-3.0.0/onemap/R/draw_map2.R | 2 onemap-3.0.0/onemap/R/extract_depth.R | 22 onemap-3.0.0/onemap/R/filters.R | 40 onemap-3.0.0/onemap/R/find_bins.R | 49 onemap-3.0.0/onemap/R/group_seq.R | 2 onemap-3.0.0/onemap/R/map.R | 19 onemap-3.0.0/onemap/R/mds_onemap.R | 6 onemap-3.0.0/onemap/R/onemap_read_vcfR.R | 6 onemap-3.0.0/onemap/R/rf_graph_table.R | 120 onemap-3.0.0/onemap/R/ripple_seq.R | 2 onemap-3.0.0/onemap/R/try_seq.R | 19 onemap-3.0.0/onemap/R/utils.R | 184 onemap-3.0.0/onemap/R/write_haplotypes.R | 16 onemap-3.0.0/onemap/R/write_map.R | 2 onemap-3.0.0/onemap/build/partial.rdb |binary onemap-3.0.0/onemap/inst/doc/Inbred_Based_Populations.R | 171 onemap-3.0.0/onemap/inst/doc/Inbred_Based_Populations.Rmd | 58 onemap-3.0.0/onemap/inst/doc/Inbred_Based_Populations.html | 3036 ++++++++--- onemap-3.0.0/onemap/inst/doc/Introduction_R.R | 3 onemap-3.0.0/onemap/inst/doc/Introduction_R.Rmd | 5 onemap-3.0.0/onemap/inst/doc/Introduction_R.html | 611 +- onemap-3.0.0/onemap/inst/doc/Outcrossing_Populations.R | 246 onemap-3.0.0/onemap/inst/doc/Outcrossing_Populations.Rmd | 102 onemap-3.0.0/onemap/inst/doc/Outcrossing_Populations.html | 3060 ++++++++---- onemap-3.0.0/onemap/inst/doc/Overview.R | 3 onemap-3.0.0/onemap/inst/doc/Overview.Rmd | 381 - onemap-3.0.0/onemap/inst/doc/Overview.html | 383 + onemap-3.0.0/onemap/inst/extdata/vcf_example_f2.raw |only onemap-3.0.0/onemap/inst/extdata/vcf_example_f2.vcf.gz.tbi |only onemap-3.0.0/onemap/inst/extdata/vcf_example_out.raw |only onemap-3.0.0/onemap/inst/extdata/vcf_example_out.vcf.gz.tbi |only onemap-3.0.0/onemap/man/acum.Rd |only onemap-3.0.0/onemap/man/add_marker.Rd | 2 onemap-3.0.0/onemap/man/compare.Rd | 2 onemap-3.0.0/onemap/man/create_depths_profile.Rd | 2 onemap-3.0.0/onemap/man/create_probs.Rd | 2 onemap-3.0.0/onemap/man/draw_map2.Rd | 2 onemap-3.0.0/onemap/man/extract_depth.Rd | 22 onemap-3.0.0/onemap/man/filter_missing.Rd | 9 onemap-3.0.0/onemap/man/find_bins.Rd | 6 onemap-3.0.0/onemap/man/group_seq.Rd | 2 onemap-3.0.0/onemap/man/keep_only_selected_mks.Rd |only onemap-3.0.0/onemap/man/mds_onemap.Rd | 2 onemap-3.0.0/onemap/man/plot.onemap_progeny_haplotypes.Rd | 2 onemap-3.0.0/onemap/man/remove_inds.Rd | 2 onemap-3.0.0/onemap/man/rf_graph_table.Rd | 4 onemap-3.0.0/onemap/man/rf_snp_filter_onemap.Rd |only onemap-3.0.0/onemap/man/ripple_seq.Rd | 2 onemap-3.0.0/onemap/man/try_seq.Rd | 2 onemap-3.0.0/onemap/man/write_map.Rd | 2 onemap-3.0.0/onemap/src/hmm_out.cpp | 16 onemap-3.0.0/onemap/vignettes/Inbred_Based_Populations.Rmd | 58 onemap-3.0.0/onemap/vignettes/Introduction_R.Rmd | 5 onemap-3.0.0/onemap/vignettes/Outcrossing_Populations.Rmd | 102 onemap-3.0.0/onemap/vignettes/Overview.Rmd | 381 - onemap-3.0.0/onemap/vignettes/f2_img/map.jpg |binary onemap-3.0.0/onemap/vignettes/f2_img/mds.jpg |binary onemap-3.0.0/onemap/vignettes/f2_img/rcd.jpg |binary onemap-3.0.0/onemap/vignettes/f2_img/record.jpg |binary onemap-3.0.0/onemap/vignettes/f2_img/ug.jpg |binary 80 files changed, 6621 insertions(+), 3163 deletions(-)
Title: Extract and Clean World Football (Soccer) Data
Description: Allow users to obtain clean and tidy
football (soccer) game, team and player data. Data is collected from a
number of popular sites, including 'FBref',
transfer and valuations data from
'Transfermarkt'<https://www.transfermarkt.com/> and shooting location
and other match stats data from 'Understat'<https://understat.com/>
and 'fotmob'<https://www.fotmob.com/>. It gives users the
ability to access data more efficiently, rather than having to export
data tables to files before being able to complete their analysis.
Author: Jason Zivkovic [aut, cre, cph],
Tony ElHabr [ctb],
Tan Ho [ctb],
Samuel H [ctb]
Maintainer: Jason Zivkovic <jaseziv83@gmail.com>
Diff between worldfootballR versions 0.6.1 dated 2022-10-14 and 0.6.2 dated 2022-11-25
DESCRIPTION | 6 +-- MD5 | 62 +++++++++++++++++++------------------- NAMESPACE | 2 - NEWS.md | 27 ++++++++++++++++ R/fb_player_goal_logs.R | 5 ++- R/fb_team_goal_logs.R | 9 +++-- R/fotmob_helpers.R | 7 ++-- R/fotmob_leagues.R | 44 ++++++++++----------------- R/fotmob_matches.R | 4 +- R/fotmob_players.R | 2 - R/fotmob_stats.R | 67 ++++++++++++++++++++++++++---------------- R/get_advanced_match_stats.R | 4 +- R/get_match_lineups.R | 2 - R/get_match_report.R | 4 +- R/get_match_shooting.R | 20 ++++++++---- R/get_match_summary.R | 4 +- R/internals.R | 13 ++++++++ R/load_fb.R | 7 ++-- R/load_fotmob.R | 2 - R/load_understat.R | 2 - R/player_market_values.R | 7 +--- R/tm_expiring_contracts.R | 10 +++--- R/tm_league_debutants.R | 8 ++--- R/tm_league_injuries.R | 6 +-- R/tm_matchday_table.R | 8 ++--- R/tm_staff_job_history.R | 22 ++++++------- R/tm_team_staff_history.R | 4 +- R/tm_team_transfer_balances.R | 10 +++--- R/tm_team_transfers.R | 4 +- tests/testthat/test-fbref.R | 10 +++++- tests/testthat/test-fotmob.R | 66 +++++++++++++++++++++-------------------- tests/testthat/test-load.R | 14 +++++--- 32 files changed, 267 insertions(+), 195 deletions(-)
More information about worldfootballR at CRAN
Permanent link
Title: Set-Based Inference for Multiple Interval-Censored Outcomes
Description: Contains tests for association between a set of genetic variants and multiple correlated outcomes that are interval censored. Interval-censored data arises when the exact time of the onset of an outcome of interest is unknown but known to fall between two time points.
Author: Jaihee Choi [aut, cre],
Ryan Sun [aut]
Maintainer: Jaihee Choi <jaiheechoi01@gmail.com>
Diff between SIMICO versions 0.1.0 dated 2022-11-07 and 0.2.0 dated 2022-11-25
DESCRIPTION | 10 ++++++---- MD5 | 11 ++++++++--- NAMESPACE | 5 +++-- NEWS.md | 5 +++++ build |only inst |only vignettes |only 7 files changed, 22 insertions(+), 9 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/colors>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, ctb] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, cre] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between see versions 0.7.3 dated 2022-09-20 and 0.7.4 dated 2022-11-25
DESCRIPTION | 34 ++-- MD5 | 191 +++++++++++----------- NAMESPACE | 14 + NEWS.md | 41 +++- R/coord_radar.R | 2 R/data_plot.R | 65 +++---- R/geom_binomdensity.R | 9 - R/geom_from_list.R | 2 R/geom_point2.R | 2 R/geom_violindot.R | 6 R/geom_violinhalf.R | 2 R/plot.bayesfactor_models.R | 2 R/plot.bayesfactor_parameters.R | 4 R/plot.binned_residuals.R | 24 ++ R/plot.check_collinearity.R | 2 R/plot.check_distribution.R | 10 - R/plot.check_heteroscedasticity.R | 2 R/plot.check_model.R | 52 +++--- R/plot.check_normality.R | 6 R/plot.check_outliers.R | 6 R/plot.check_outliers_new.R | 10 - R/plot.check_overdisp.R | 2 R/plot.compare_parameters.R | 4 R/plot.compare_performance.R | 4 R/plot.describe_distribution.R | 4 R/plot.equivalence_test.R | 25 +- R/plot.estimate_contrasts.R | 12 - R/plot.estimate_density.R | 36 ++-- R/plot.hdi.R | 20 +- R/plot.n_factors.R | 4 R/plot.p_direction.R | 18 +- R/plot.p_function.R |only R/plot.p_significance.R | 18 +- R/plot.parameters_brms_meta.R | 73 ++++---- R/plot.parameters_model.R | 23 +- R/plot.parameters_pca.R | 8 R/plot.parameters_sem.R | 6 R/plot.parameters_simulate.R | 6 R/plot.performance_pp_check.R | 22 +- R/plot.performance_roc.R | 2 R/plot.point_estimates.R | 26 +-- R/plot.rope.R | 16 - R/plot.si.R | 24 +- R/plot.visualisation_recipe.R | 2 R/plots.R | 2 R/scale_color_colorhex.R |only R/scale_color_okabeito.R | 2 R/see-package.R |only R/theme_radar.R | 2 R/utils_add_prior_layer.R | 10 - build |only man/coord_radar.Rd | 2 man/data_plot.Rd | 65 +++---- man/geom_binomdensity.Rd | 2 man/geom_from_list.Rd | 2 man/geom_point2.Rd | 2 man/geom_violindot.Rd | 8 man/geom_violinhalf.Rd | 20 +- man/palette_colorhex.Rd |only man/plot.see_estimate_contrasts.Rd | 12 - man/plot.see_estimate_density.Rd | 16 + man/plot.see_hdi.Rd | 18 +- man/plot.see_p_direction.Rd | 14 - man/plot.see_p_function.Rd |only man/plot.see_p_significance.Rd | 14 - man/plot.see_parameters_brms_meta.Rd | 49 ++--- man/plot.see_parameters_simulate.Rd | 4 man/plot.see_point_estimate.Rd | 16 + man/plot.see_rope.Rd | 16 + man/plot.see_si.Rd | 16 + man/plots.Rd | 2 man/scale_color_colorhex.Rd |only man/scale_color_okabeito.Rd | 2 man/see-package.Rd |only man/theme_radar.Rd | 2 tests/testthat.R | 12 + tests/testthat/helpers.R |only tests/testthat/test-check_model.R |only tests/testthat/test-plot.check_collinearity.R | 3 tests/testthat/test-plot.check_distribution.R | 17 -- tests/testthat/test-plot.check_normality.R | 93 +++++----- tests/testthat/test-plot.cluster_analysis.R | 10 - tests/testthat/test-plot.easycormatrix.R | 15 - tests/testthat/test-plot.equivalence_test.R | 9 - tests/testthat/test-plot.estimate_contrasts.R | 7 tests/testthat/test-plot.estimate_density.R | 18 +- tests/testthat/test-plot.hdi.R | 17 -- tests/testthat/test-plot.n_factors.R | 38 ++-- tests/testthat/test-plot.p_direction.R | 17 -- tests/testthat/test-plot.p_significance.R | 17 -- tests/testthat/test-plot.performance_pp_check.R | 17 -- tests/testthat/test-plot.performance_roc.R | 26 +-- tests/testthat/test-plot.point_estimates.R | 14 - tests/testthat/test-plot.rope.R | 14 - tests/testthat/test-plot.si.R | 16 - tests/testthat/test-plots.R | 5 tests/testthat/test-scale_color_colorhex_c.R |only tests/testthat/test-scale_color_values.R | 8 tests/testthat/test-vdiffr_bayestestr_plots.R | 49 ++--- tests/testthat/test-vdiffr_geoms_coords.R | 162 +++++++++---------- tests/testthat/test-vdiffr_scale_color.R | 204 +++++++++++------------- tests/testthat/test-vdiffr_themes.R | 129 +++++++-------- 102 files changed, 1060 insertions(+), 996 deletions(-)
Title: Variance Stabilization by Data-Driven Haar-Fisz (for
Microarrays)
Description: Contains the normalizing and variance stabilizing
Data-Driven Haar-Fisz algorithm. Also contains related algorithms
for simulating from certain microarray gene intensity models and
evaluation of certain transformations. Contains cDNA and shipping
credit flow data.
Author: Efthimios Motakis [aut],
Guy Nason [aut, cre],
Piotr Fryzlewicz [aut]
Maintainer: Guy Nason <g.nason@imperial.ac.uk>
Diff between DDHFm versions 1.1.2 dated 2016-10-24 and 1.1.3 dated 2022-11-25
DESCRIPTION | 12 ++++++------ MD5 | 15 ++++++++------- build/vignette.rds |binary data/ShipCreditFlow.rda |binary data/cdna.rda |binary inst/CHANGES | 3 +++ inst/doc/DDHFm.pdf |binary src/DDHFm.c | 9 +++++---- src/DDHFm_init.c |only 9 files changed, 22 insertions(+), 17 deletions(-)
Title: Visualize Simon's Two-Stage Design
Description: Functions for visualizing the probabilities of early
termination, fail and success of Simon's two-stage design.
Functions for evaluating and visualizing the operating
characteristics of Simon's two-stage design.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between VisualizeSimon2Stage versions 0.1.0 dated 2022-06-28 and 0.1.1 dated 2022-11-25
VisualizeSimon2Stage-0.1.0/VisualizeSimon2Stage/R/Simon_oc.R |only VisualizeSimon2Stage-0.1.0/VisualizeSimon2Stage/man/print.ph2simon.Rd |only VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/DESCRIPTION | 16 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/MD5 | 30 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/NAMESPACE | 6 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/NEWS.md | 2 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/R/Simon_pr.R | 324 ++++++++-- VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/R/VisualizeSimon2Stage_info.R | 6 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/R/ph2simon_etc.R | 92 +- VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/build/partial.rdb |binary VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/Simon_oc-class.Rd | 15 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/Simon_oc.Rd | 11 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/Simon_pr-class.Rd | 14 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/Simon_pr.Rd | 26 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/VisualizeSimon2Stage-package.Rd | 2 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/autoplot.ph2simon.Rd |only VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/show-Simon_oc-method.Rd | 2 VisualizeSimon2Stage-0.1.1/VisualizeSimon2Stage/man/simon_design-class.Rd |only 18 files changed, 406 insertions(+), 140 deletions(-)
More information about VisualizeSimon2Stage at CRAN
Permanent link
Title: Flexible Relative Survival Analysis
Description: Package for parametric relative survival analyses. It allows to model non-linear and
non-proportional effects and both non proportional and non linear effects, using splines (B-spline and truncated power basis), Weighted Cumulative Index of Exposure effect, with correction model for
the life table. Both non proportional and non linear effects are described in
Remontet, L. et al. (2007) <doi:10.1002/sim.2656> and
Mahboubi, A. et al. (2011) <doi:10.1002/sim.4208>.
Permanent link
Title: An Improved Version of WA-PLS
Description: The goal of this package is to provide an improved version of
WA-PLS (Weighted Averaging Partial Least Squares) by including the
tolerances of taxa and the frequency of the sampled climate variable.
This package also provides a way of leave-out cross-validation that
removes both the test site and sites that are both geographically
close and climatically close for each cycle, to avoid the risk of
pseudo-replication.
Author: Mengmeng Liu [aut] ,
Iain Colin Prentice [aut] ,
Cajo J. F. ter Braak [aut] ,
Sandy P. Harrison [aut] ,
Roberto Villegas-Diaz [aut, cre]
,
SPECIAL Research Group @ University of Reading [cph]
Maintainer: Roberto Villegas-Diaz <r.villegas-diaz@outlook.com>
Diff between fxTWAPLS versions 0.1.1 dated 2022-06-06 and 0.1.2 dated 2022-11-25
DESCRIPTION | 11 MD5 | 40 NEWS.md | 5 R/fxTWAPLS.R | 2244 ++++++++++++++++++++++++------------------------ R/utils.R | 5 README.md | 199 +++- man/TWAPLS.predict.w.Rd | 30 man/TWAPLS.w.Rd | 18 man/TWAPLS.w2.Rd | 21 man/WAPLS.predict.w.Rd | 28 man/WAPLS.w.Rd | 18 man/WAPLS.w2.Rd | 21 man/cv.pr.w.Rd | 86 - man/cv.w.Rd | 64 - man/fx_pspline.Rd | 24 man/get_distance.Rd | 17 man/get_pseudo.Rd | 29 man/plot_residuals.Rd | 34 man/plot_train.Rd | 34 man/rand.t.test.w.Rd | 38 man/sse.sample.Rd | 94 -- 21 files changed, 1599 insertions(+), 1461 deletions(-)
Title: Correlation and Regression Analyses for Randomized Response Data
Description: Univariate and multivariate methods to analyze randomized response
(RR) survey designs (e.g., Warner, S. L. (1965). Randomized response: A
survey technique for eliminating evasive answer bias. Journal of the
American Statistical Association, 60, 63–69, <doi:10.2307/2283137>).
Besides univariate estimates of true proportions, RR variables can be used
for correlations, as dependent variable in a logistic regression (with or
without random effects), or as predictors in a linear regression
(Heck, D. W., & Moshagen, M. (2018). RRreg: An R package for correlation and
regression analyses of randomized response data. Journal of Statistical
Software, 85(2), 1–29, <doi:10.18637/jss.v085.i02>). For simulations and
the estimation of statistical power, RR data can be generated according to
several models. The implemented methods also allow to test the link between
continuous covariates and dishonesty in cheating paradigms such as the
coin-toss or dice-roll task (Moshagen, M., & [...truncated...]
Author: Daniel W. Heck [cre, aut] ,
Morten Moshagen [ctb]
Maintainer: Daniel W. Heck <daniel.heck@uni-marburg.de>
Diff between RRreg versions 0.7.4 dated 2022-11-10 and 0.7.5 dated 2022-11-25
RRreg-0.7.4/RRreg/R/RRlin.getPW.R |only RRreg-0.7.4/RRreg/R/RRlin.ll.R |only RRreg-0.7.4/RRreg/R/RRuni.models.R |only RRreg-0.7.4/RRreg/R/RRuni_ll.R |only RRreg-0.7.5/RRreg/DESCRIPTION | 20 RRreg-0.7.5/RRreg/MD5 | 80 - RRreg-0.7.5/RRreg/NAMESPACE | 1 RRreg-0.7.5/RRreg/NEWS | 9 RRreg-0.7.5/RRreg/R/RRcheck.R | 361 ++++---- RRreg-0.7.5/RRreg/R/RRcor.R | 755 +++++++++-------- RRreg-0.7.5/RRreg/R/RRcor.models.R | 172 +-- RRreg-0.7.5/RRreg/R/RRgen.R | 513 ++++++----- RRreg-0.7.5/RRreg/R/RRlin.R | 627 ++++++++------ RRreg-0.7.5/RRreg/R/RRlin_getPW.R |only RRreg-0.7.5/RRreg/R/RRlin_loglik.R |only RRreg-0.7.5/RRreg/R/RRlog.R | 792 +++++++++++------- RRreg-0.7.5/RRreg/R/RRlog_check.R | 23 RRreg-0.7.5/RRreg/R/RRlog_fit.R | 137 +-- RRreg-0.7.5/RRreg/R/RRmixed.R | 179 ++-- RRreg-0.7.5/RRreg/R/RRreg-package.R | 71 - RRreg-0.7.5/RRreg/R/RRsimu.R | 735 +++++++++------- RRreg-0.7.5/RRreg/R/RRuni.R | 405 +++++---- RRreg-0.7.5/RRreg/R/RRuni_loglik.R |only RRreg-0.7.5/RRreg/R/RRuni_models.R |only RRreg-0.7.5/RRreg/R/helper_functions.R | 30 RRreg-0.7.5/RRreg/R/powerplot.R | 163 ++- RRreg-0.7.5/RRreg/build/partial.rdb |only RRreg-0.7.5/RRreg/inst/doc/Heck_Moshagen_2018_JSS.pdf |binary RRreg-0.7.5/RRreg/inst/doc/RRreg.R | 237 +++-- RRreg-0.7.5/RRreg/inst/doc/RRreg.Rmd | 259 +++-- RRreg-0.7.5/RRreg/inst/doc/RRreg.html | 543 +++++++----- RRreg-0.7.5/RRreg/man/RRcor.Rd | 97 +- RRreg-0.7.5/RRreg/man/RRgen.Rd | 98 +- RRreg-0.7.5/RRreg/man/RRlin.Rd | 76 + RRreg-0.7.5/RRreg/man/RRlog.Rd | 98 +- RRreg-0.7.5/RRreg/man/RRmixed.Rd | 97 +- RRreg-0.7.5/RRreg/man/RRreg-package.Rd | 35 RRreg-0.7.5/RRreg/man/RRsimu.Rd | 92 +- RRreg-0.7.5/RRreg/man/RRuni.Rd | 125 +- RRreg-0.7.5/RRreg/man/anova.RRlog.Rd |only RRreg-0.7.5/RRreg/man/getPW.Rd | 35 RRreg-0.7.5/RRreg/man/minarets.Rd | 9 RRreg-0.7.5/RRreg/man/plot.RRlog.Rd | 30 RRreg-0.7.5/RRreg/man/powerplot.Rd | 15 RRreg-0.7.5/RRreg/man/predict.RRlog.Rd | 20 RRreg-0.7.5/RRreg/vignettes/RRreg.Rmd | 259 +++-- 46 files changed, 4259 insertions(+), 2939 deletions(-)
Title: Event Stream Abstraction using Interval Logic
Description: This is the R API for the 'nfer' formalism (<http://nfer.io/>).
'nfer' was developed to specify event stream abstractions for spacecraft
telemetry such as the Mars Science Laboratory. Users write rules using
a syntax that borrows heavily from Allen's Temporal Logic that, when
applied to an event stream, construct a hierarchy of temporal intervals
with data. The R API supports loading rules from a file or mining them
from historical data. Traces of events or pools of intervals are
provided as data frames.
Author: Sean Kauffman [aut, cre]
Maintainer: Sean Kauffman <seank@cs.aau.dk>
Diff between nfer versions 1.1.0 dated 2022-03-28 and 1.1.1 dated 2022-11-25
DESCRIPTION | 8 MD5 | 64 ++-- NEWS.md | 5 build/vignette.rds |binary inst/doc/getting-started.html | 14 inst/extdata/cycle_exclude.events |only inst/extdata/cycle_exclude.nfer |only inst/extdata/cycle_one.events |only inst/extdata/cycle_one.nfer |only inst/extdata/dupl_equals.events |only inst/extdata/dupl_equals.nfer |only inst/extdata/dupl_simple.events |only inst/extdata/dupl_simple.nfer |only inst/extdata/exclude_self.events |only inst/extdata/exclude_self.nfer |only src/analysis.c | 378 ++++++++++++++++++++++++ src/analysis.h | 17 + src/dsl.yy.c | 175 +++++------ src/expression.c | 9 src/generate.c | 10 src/learn.c | 7 src/log.h | 5 src/map.c | 98 +++++- src/map.h | 3 src/nfer.c | 152 +++++++-- src/nfer.h | 16 - src/pool.c | 68 +++- src/pool.h | 4 src/rinterface.c | 12 src/semantic.c | 96 +++--- src/semantic.h | 4 src/stack.c | 17 - src/static.c | 549 ------------------------------------ src/static.h | 18 - src/types.c | 54 ++- src/types.h | 1 tests/testthat/test-cycle-exclude.R |only tests/testthat/test-cycle-one.R |only tests/testthat/test-dupl.R |only tests/testthat/test-exclude.R |only 40 files changed, 957 insertions(+), 827 deletions(-)
Title: Computation of Variance-Based Sensitivity Indices
Description: It allows to rapidly compute, bootstrap and plot up to fourth-order Sobol'-based sensitivity indices using several state-of-the-art first and total-order estimators. Sobol' indices can be computed either for models that yield a scalar as a model output or for systems of differential equations. The package also provides a suit of benchmark tests functions and several options to obtain publication-ready figures of the model output uncertainty and sensitivity-related analysis. An overview of the package can be found in Puy et al. (2022) <doi:10.18637/jss.v102.i05>.
Author: Arnald Puy [aut, cre] ,
Bertrand Ioos [ctb] ,
Gilles Pujol [ctb] ,
RStudio [cph]
Maintainer: Arnald Puy <arnald.puy@pm.me>
Diff between sensobol versions 1.1.2 dated 2022-11-16 and 1.1.3 dated 2022-11-25
DESCRIPTION | 8 ++++---- MD5 | 20 +++++++++++--------- NAMESPACE | 2 ++ NEWS.md | 4 ++++ R/load_packages.R |only build/partial.rdb |binary inst/doc/sensobol.pdf |binary man/load_packages.Rd |only man/plot.sensobol.Rd | 5 +++-- man/sobol_dummy.Rd | 2 +- man/sobol_indices.Rd | 8 ++++---- man/sobol_matrices.Rd | 10 ++++++---- 12 files changed, 35 insertions(+), 24 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.5.1 dated 2022-09-20 and 0.6.0 dated 2022-11-25
DESCRIPTION | 6 MD5 | 1587 R/backend-dbplyr__duckdb_connection.R | 2 R/cpp11.R | 4 R/dbFetch__duckdb_result.R | 2 R/register.R | 5 R/relational.R | 4 man/backend-duckdb.Rd | 2 man/duckdb_register.Rd | 4 man/rel_from_df.Rd | 2 src/Makevars | 4 src/Makevars.win | 4 src/altrep.cpp | 19 src/cpp11.cpp | 82 src/duckdb/extension/parquet/column_reader.cpp | 180 src/duckdb/extension/parquet/column_writer.cpp | 6 src/duckdb/extension/parquet/include/boolean_column_reader.hpp | 6 src/duckdb/extension/parquet/include/cast_column_reader.hpp | 4 src/duckdb/extension/parquet/include/column_reader.hpp | 8 src/duckdb/extension/parquet/include/generated_column_reader.hpp | 5 src/duckdb/extension/parquet/include/list_column_reader.hpp | 5 src/duckdb/extension/parquet/include/parquet_reader.hpp | 1 src/duckdb/extension/parquet/include/row_number_column_reader.hpp |only src/duckdb/extension/parquet/include/struct_column_reader.hpp | 2 src/duckdb/extension/parquet/parquet-extension.cpp | 88 src/duckdb/extension/parquet/parquet_metadata.cpp | 2 src/duckdb/extension/parquet/parquet_reader.cpp | 43 src/duckdb/extension/parquet/parquet_statistics.cpp | 10 src/duckdb/src/catalog/catalog.cpp | 4 src/duckdb/src/catalog/catalog_entry/column_dependency_manager.cpp | 78 src/duckdb/src/catalog/catalog_entry/scalar_function_catalog_entry.cpp |only src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 13 src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 311 src/duckdb/src/catalog/catalog_set.cpp | 10 src/duckdb/src/catalog/default/default_types.cpp | 1 src/duckdb/src/catalog/default/default_views.cpp | 2 src/duckdb/src/catalog/dependency_manager.cpp | 24 src/duckdb/src/common/allocator.cpp | 51 src/duckdb/src/common/assert.cpp | 3 src/duckdb/src/common/box_renderer.cpp |only src/duckdb/src/common/enums/compression_type.cpp | 8 src/duckdb/src/common/enums/logical_operator_type.cpp | 2 src/duckdb/src/common/enums/physical_operator_type.cpp | 4 src/duckdb/src/common/exception.cpp | 28 src/duckdb/src/common/file_buffer.cpp | 76 src/duckdb/src/common/file_system.cpp | 34 src/duckdb/src/common/fsst.cpp |only src/duckdb/src/common/hive_partitioning.cpp | 7 src/duckdb/src/common/local_file_system.cpp | 13 src/duckdb/src/common/operator/cast_operators.cpp | 85 src/duckdb/src/common/preserved_error.cpp | 10 src/duckdb/src/common/printer.cpp | 58 src/duckdb/src/common/progress_bar.cpp | 64 src/duckdb/src/common/radix_partitioning.cpp | 109 src/duckdb/src/common/row_operations/row_external.cpp | 4 src/duckdb/src/common/row_operations/row_gather.cpp | 2 src/duckdb/src/common/row_operations/row_heap_scatter.cpp | 16 src/duckdb/src/common/row_operations/row_radix_scatter.cpp | 1 src/duckdb/src/common/serializer/buffered_file_reader.cpp | 16 src/duckdb/src/common/serializer/buffered_file_writer.cpp | 17 src/duckdb/src/common/sort/comparators.cpp | 28 src/duckdb/src/common/sort/radix_sort.cpp | 27 src/duckdb/src/common/sort/sorted_block.cpp | 129 src/duckdb/src/common/string_util.cpp | 14 src/duckdb/src/common/types.cpp | 110 src/duckdb/src/common/types/blob.cpp | 12 src/duckdb/src/common/types/chunk_collection.cpp | 19 src/duckdb/src/common/types/column_data_allocator.cpp | 100 src/duckdb/src/common/types/column_data_collection.cpp | 19 src/duckdb/src/common/types/column_data_collection_segment.cpp | 1 src/duckdb/src/common/types/column_data_consumer.cpp |only src/duckdb/src/common/types/data_chunk.cpp | 48 src/duckdb/src/common/types/date.cpp | 19 src/duckdb/src/common/types/hash.cpp | 23 src/duckdb/src/common/types/hugeint.cpp | 6 src/duckdb/src/common/types/partitioned_column_data.cpp |only src/duckdb/src/common/types/row_data_collection.cpp | 3 src/duckdb/src/common/types/row_data_collection_scanner.cpp | 4 src/duckdb/src/common/types/string_type.cpp | 6 src/duckdb/src/common/types/timestamp.cpp | 39 src/duckdb/src/common/types/uuid.cpp | 12 src/duckdb/src/common/types/validity_mask.cpp | 6 src/duckdb/src/common/types/value.cpp | 343 src/duckdb/src/common/types/vector.cpp | 294 src/duckdb/src/common/types/vector_buffer.cpp | 6 src/duckdb/src/common/types/vector_cache.cpp | 19 src/duckdb/src/common/value_operations/comparison_operations.cpp | 2 src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 4 src/duckdb/src/common/vector_operations/vector_cast.cpp | 890 src/duckdb/src/common/vector_operations/vector_copy.cpp | 25 src/duckdb/src/execution/aggregate_hashtable.cpp | 163 src/duckdb/src/execution/base_aggregate_hashtable.cpp | 11 src/duckdb/src/execution/column_binding_resolver.cpp | 2 src/duckdb/src/execution/expression_executor.cpp | 48 src/duckdb/src/execution/expression_executor/execute_cast.cpp | 6 src/duckdb/src/execution/expression_executor/execute_function.cpp | 2 src/duckdb/src/execution/expression_executor_state.cpp | 32 src/duckdb/src/execution/index/art/art.cpp | 486 src/duckdb/src/execution/index/art/art_key.cpp | 51 src/duckdb/src/execution/index/art/iterator.cpp | 65 src/duckdb/src/execution/index/art/leaf.cpp | 207 src/duckdb/src/execution/index/art/node.cpp | 394 src/duckdb/src/execution/index/art/node16.cpp | 52 src/duckdb/src/execution/index/art/node256.cpp | 50 src/duckdb/src/execution/index/art/node4.cpp | 47 src/duckdb/src/execution/index/art/node48.cpp | 70 src/duckdb/src/execution/index/art/prefix.cpp | 144 src/duckdb/src/execution/index/art/swizzleable_pointer.cpp | 16 src/duckdb/src/execution/join_hashtable.cpp | 121 src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 17 src/duckdb/src/execution/operator/aggregate/distinct_aggregate_data.cpp | 144 src/duckdb/src/execution/operator/aggregate/grouped_aggregate_data.cpp |only src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 731 src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 6 src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 19 src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 257 src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 368 src/duckdb/src/execution/operator/filter/physical_filter.cpp | 10 src/duckdb/src/execution/operator/helper/physical_execute.cpp | 11 src/duckdb/src/execution/operator/helper/physical_limit.cpp | 2 src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 40 src/duckdb/src/execution/operator/helper/physical_result_collector.cpp | 35 src/duckdb/src/execution/operator/helper/physical_set.cpp | 13 src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 9 src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 9 src/duckdb/src/execution/operator/join/physical_comparison_join.cpp | 2 src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 13 src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 30 src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 226 src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 76 src/duckdb/src/execution/operator/join/physical_index_join.cpp | 50 src/duckdb/src/execution/operator/join/physical_join.cpp | 65 src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 23 src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 43 src/duckdb/src/execution/operator/join/physical_range_join.cpp | 5 src/duckdb/src/execution/operator/order/physical_order.cpp | 52 src/duckdb/src/execution/operator/order/physical_top_n.cpp | 14 src/duckdb/src/execution/operator/persistent/base_csv_reader.cpp |only src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 810 src/duckdb/src/execution/operator/persistent/csv_buffer.cpp |only src/duckdb/src/execution/operator/persistent/csv_reader_options.cpp |only src/duckdb/src/execution/operator/persistent/parallel_csv_reader.cpp |only src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp |only src/duckdb/src/execution/operator/persistent/physical_export.cpp | 6 src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 200 src/duckdb/src/execution/operator/persistent/physical_update.cpp | 24 src/duckdb/src/execution/operator/projection/physical_projection.cpp | 2 src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 13 src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 13 src/duckdb/src/execution/operator/scan/physical_column_data_scan.cpp | 9 src/duckdb/src/execution/operator/scan/physical_expression_scan.cpp | 6 src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 22 src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 184 src/duckdb/src/execution/operator/schema/physical_create_type.cpp | 78 src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 63 src/duckdb/src/execution/operator/set/physical_union.cpp | 43 src/duckdb/src/execution/partitionable_hashtable.cpp | 28 src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 4 src/duckdb/src/execution/physical_operator.cpp | 150 src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 2 src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 12 src/duckdb/src/execution/physical_plan/plan_create.cpp | 13 src/duckdb/src/execution/physical_plan/plan_create_index.cpp | 49 src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 21 src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 7 src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 2 src/duckdb/src/execution/physical_plan/plan_get.cpp | 15 src/duckdb/src/execution/physical_plan/plan_insert.cpp | 59 src/duckdb/src/execution/physical_plan/plan_limit.cpp | 8 src/duckdb/src/execution/physical_plan/plan_order.cpp | 10 src/duckdb/src/execution/physical_plan_generator.cpp | 16 src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 125 src/duckdb/src/execution/window_segment_tree.cpp | 114 src/duckdb/src/function/aggregate/distributive/approx_count.cpp | 35 src/duckdb/src/function/aggregate/distributive/count.cpp | 2 src/duckdb/src/function/aggregate/distributive/entropy.cpp | 7 src/duckdb/src/function/aggregate/distributive/first.cpp | 52 src/duckdb/src/function/aggregate/distributive/minmax.cpp | 78 src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 2 src/duckdb/src/function/aggregate/holistic/approximate_quantile.cpp | 7 src/duckdb/src/function/aggregate/holistic/quantile.cpp | 6 src/duckdb/src/function/aggregate/holistic/reservoir_quantile.cpp | 13 src/duckdb/src/function/aggregate/nested/histogram.cpp | 7 src/duckdb/src/function/aggregate/nested/list.cpp | 11 src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 18 src/duckdb/src/function/cast |only 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src/duckdb/src/function/scalar/list/list_sort.cpp | 16 src/duckdb/src/function/scalar/list/list_value.cpp | 2 src/duckdb/src/function/scalar/map/cardinality.cpp | 9 src/duckdb/src/function/scalar/math/numeric.cpp | 2 src/duckdb/src/function/scalar/math/random.cpp | 30 src/duckdb/src/function/scalar/nested_functions.cpp | 3 src/duckdb/src/function/scalar/sequence/nextval.cpp | 27 src/duckdb/src/function/scalar/string/chr.cpp | 36 src/duckdb/src/function/scalar/string/left_right.cpp | 54 src/duckdb/src/function/scalar/string/length.cpp | 15 src/duckdb/src/function/scalar/string/levenshtein.cpp | 11 src/duckdb/src/function/scalar/string/like.cpp | 26 src/duckdb/src/function/scalar/string/regexp.cpp | 340 src/duckdb/src/function/scalar/string/string_split.cpp | 302 src/duckdb/src/function/scalar/string/substring.cpp | 152 src/duckdb/src/function/scalar/struct/struct_extract.cpp | 2 src/duckdb/src/function/scalar/system/aggregate_export.cpp | 32 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src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 29 src/duckdb/src/include/duckdb/common/string_util.hpp | 21 src/duckdb/src/include/duckdb/common/swap.hpp |only src/duckdb/src/include/duckdb/common/types.hpp | 16 src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 2 src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp | 22 src/duckdb/src/include/duckdb/common/types/column_data_collection.hpp | 8 src/duckdb/src/include/duckdb/common/types/column_data_collection_segment.hpp | 2 src/duckdb/src/include/duckdb/common/types/column_data_consumer.hpp |only src/duckdb/src/include/duckdb/common/types/column_data_scan_states.hpp | 2 src/duckdb/src/include/duckdb/common/types/data_chunk.hpp | 26 src/duckdb/src/include/duckdb/common/types/date.hpp | 6 src/duckdb/src/include/duckdb/common/types/partitioned_column_data.hpp |only src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp | 5 src/duckdb/src/include/duckdb/common/types/row_data_collection_scanner.hpp | 5 src/duckdb/src/include/duckdb/common/types/string_type.hpp | 26 src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 7 src/duckdb/src/include/duckdb/common/types/type_map.hpp |only src/duckdb/src/include/duckdb/common/types/validity_mask.hpp | 8 src/duckdb/src/include/duckdb/common/types/value.hpp | 33 src/duckdb/src/include/duckdb/common/types/value_map.hpp | 2 src/duckdb/src/include/duckdb/common/types/vector.hpp | 103 src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 25 src/duckdb/src/include/duckdb/common/types/vector_cache.hpp | 7 src/duckdb/src/include/duckdb/common/vector_operations/general_cast.hpp | 16 src/duckdb/src/include/duckdb/common/vector_operations/generic_executor.hpp |only src/duckdb/src/include/duckdb/common/vector_operations/vector_operations.hpp | 14 src/duckdb/src/include/duckdb/common/vector_size.hpp | 2 src/duckdb/src/include/duckdb/execution/aggregate_hashtable.hpp | 18 src/duckdb/src/include/duckdb/execution/base_aggregate_hashtable.hpp | 4 src/duckdb/src/include/duckdb/execution/execution_context.hpp | 6 src/duckdb/src/include/duckdb/execution/executor.hpp | 39 src/duckdb/src/include/duckdb/execution/expression_executor.hpp | 30 src/duckdb/src/include/duckdb/execution/expression_executor_state.hpp | 10 src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 57 src/duckdb/src/include/duckdb/execution/index/art/art_key.hpp | 53 src/duckdb/src/include/duckdb/execution/index/art/iterator.hpp | 6 src/duckdb/src/include/duckdb/execution/index/art/leaf.hpp | 40 src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 94 src/duckdb/src/include/duckdb/execution/index/art/node16.hpp | 24 src/duckdb/src/include/duckdb/execution/index/art/node256.hpp | 23 src/duckdb/src/include/duckdb/execution/index/art/node4.hpp | 24 src/duckdb/src/include/duckdb/execution/index/art/node48.hpp | 25 src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp | 25 src/duckdb/src/include/duckdb/execution/index/art/swizzleable_pointer.hpp | 29 src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 76 src/duckdb/src/include/duckdb/execution/operator/aggregate/aggregate_object.hpp | 12 src/duckdb/src/include/duckdb/execution/operator/aggregate/distinct_aggregate_data.hpp | 66 src/duckdb/src/include/duckdb/execution/operator/aggregate/grouped_aggregate_data.hpp | 81 src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_hash_aggregate.hpp | 79 src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_perfecthash_aggregate.hpp | 4 src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_streaming_window.hpp | 4 src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_ungrouped_aggregate.hpp | 3 src/duckdb/src/include/duckdb/execution/operator/aggregate/physical_window.hpp | 9 src/duckdb/src/include/duckdb/execution/operator/filter/physical_filter.hpp | 12 src/duckdb/src/include/duckdb/execution/operator/helper/physical_batch_collector.hpp | 4 src/duckdb/src/include/duckdb/execution/operator/helper/physical_execute.hpp | 3 src/duckdb/src/include/duckdb/execution/operator/helper/physical_materialized_collector.hpp | 2 src/duckdb/src/include/duckdb/execution/operator/helper/physical_result_collector.hpp | 6 src/duckdb/src/include/duckdb/execution/operator/join/physical_blockwise_nl_join.hpp | 9 src/duckdb/src/include/duckdb/execution/operator/join/physical_comparison_join.hpp | 4 src/duckdb/src/include/duckdb/execution/operator/join/physical_cross_product.hpp | 15 src/duckdb/src/include/duckdb/execution/operator/join/physical_delim_join.hpp | 6 src/duckdb/src/include/duckdb/execution/operator/join/physical_hash_join.hpp | 17 src/duckdb/src/include/duckdb/execution/operator/join/physical_iejoin.hpp | 8 src/duckdb/src/include/duckdb/execution/operator/join/physical_index_join.hpp | 14 src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 11 src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 9 src/duckdb/src/include/duckdb/execution/operator/join/physical_piecewise_merge_join.hpp | 9 src/duckdb/src/include/duckdb/execution/operator/join/physical_range_join.hpp | 2 src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 8 src/duckdb/src/include/duckdb/execution/operator/persistent/base_csv_reader.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 193 src/duckdb/src/include/duckdb/execution/operator/persistent/csv_buffer.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/csv_file_handle.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/csv_reader_options.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/parallel_csv_reader.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/physical_batch_insert.hpp |only src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 4 src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 2 src/duckdb/src/include/duckdb/execution/operator/persistent/physical_insert.hpp | 37 src/duckdb/src/include/duckdb/execution/operator/persistent/physical_update.hpp | 12 src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 6 src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 2 src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 2 src/duckdb/src/include/duckdb/execution/operator/scan/physical_table_scan.hpp | 13 src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp | 33 src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_type.hpp | 15 src/duckdb/src/include/duckdb/execution/operator/set/physical_recursive_cte.hpp | 8 src/duckdb/src/include/duckdb/execution/operator/set/physical_union.hpp | 2 src/duckdb/src/include/duckdb/execution/partitionable_hashtable.hpp | 9 src/duckdb/src/include/duckdb/execution/perfect_aggregate_hashtable.hpp | 7 src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 61 src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 9 src/duckdb/src/include/duckdb/execution/radix_partitioned_hashtable.hpp | 4 src/duckdb/src/include/duckdb/execution/window_segment_tree.hpp | 8 src/duckdb/src/include/duckdb/function/aggregate_function.hpp | 13 src/duckdb/src/include/duckdb/function/cast |only src/duckdb/src/include/duckdb/function/compression/compression.hpp | 15 src/duckdb/src/include/duckdb/function/compression_function.hpp | 36 src/duckdb/src/include/duckdb/function/function.hpp | 25 src/duckdb/src/include/duckdb/function/function_binder.hpp |only src/duckdb/src/include/duckdb/function/function_serialization.hpp | 5 src/duckdb/src/include/duckdb/function/function_set.hpp | 6 src/duckdb/src/include/duckdb/function/pragma/pragma_functions.hpp | 2 src/duckdb/src/include/duckdb/function/replacement_open.hpp |only src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 16 src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 52 src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 22 src/duckdb/src/include/duckdb/function/scalar_function.hpp | 17 src/duckdb/src/include/duckdb/function/table/arrow.hpp | 30 src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 22 src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 7 src/duckdb/src/include/duckdb/function/table_function.hpp | 31 src/duckdb/src/include/duckdb/main/capi |only src/duckdb/src/include/duckdb/main/client_context.hpp | 1 src/duckdb/src/include/duckdb/main/client_data.hpp | 2 src/duckdb/src/include/duckdb/main/config.hpp | 60 src/duckdb/src/include/duckdb/main/database.hpp | 14 src/duckdb/src/include/duckdb/main/db_instance_cache.hpp |only src/duckdb/src/include/duckdb/main/error_manager.hpp |only src/duckdb/src/include/duckdb/main/extension_functions.hpp |only src/duckdb/src/include/duckdb/main/extension_helper.hpp | 22 src/duckdb/src/include/duckdb/main/prepared_statement_data.hpp | 2 src/duckdb/src/include/duckdb/main/query_result.hpp | 5 src/duckdb/src/include/duckdb/main/relation.hpp | 2 src/duckdb/src/include/duckdb/main/relation/create_view_relation.hpp | 2 src/duckdb/src/include/duckdb/main/replacement_opens.hpp |only src/duckdb/src/include/duckdb/main/settings.hpp | 25 src/duckdb/src/include/duckdb/main/valid_checker.hpp |only src/duckdb/src/include/duckdb/optimizer/cardinality_estimator.hpp | 3 src/duckdb/src/include/duckdb/optimizer/deliminator.hpp | 15 src/duckdb/src/include/duckdb/optimizer/estimated_properties.hpp | 14 src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 7 src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 3 src/duckdb/src/include/duckdb/optimizer/join_node.hpp | 5 src/duckdb/src/include/duckdb/optimizer/optimizer_extension.hpp | 2 src/duckdb/src/include/duckdb/optimizer/remove_unused_columns.hpp | 2 src/duckdb/src/include/duckdb/optimizer/rule.hpp | 1 src/duckdb/src/include/duckdb/parallel/base_pipeline_event.hpp | 8 src/duckdb/src/include/duckdb/parallel/event.hpp | 13 src/duckdb/src/include/duckdb/parallel/meta_pipeline.hpp |only src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 33 src/duckdb/src/include/duckdb/parallel/pipeline_executor.hpp | 16 src/duckdb/src/include/duckdb/parallel/pipeline_finish_event.hpp | 2 src/duckdb/src/include/duckdb/parallel/pipeline_initialize_event.hpp |only src/duckdb/src/include/duckdb/parallel/task_scheduler.hpp | 2 src/duckdb/src/include/duckdb/parser/column_definition.hpp | 11 src/duckdb/src/include/duckdb/parser/column_list.hpp |only src/duckdb/src/include/duckdb/parser/constraint.hpp | 4 src/duckdb/src/include/duckdb/parser/constraints/not_null_constraint.hpp | 4 src/duckdb/src/include/duckdb/parser/constraints/unique_constraint.hpp | 4 src/duckdb/src/include/duckdb/parser/expression/between_expression.hpp | 3 src/duckdb/src/include/duckdb/parser/expression/comparison_expression.hpp | 2 src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 2 src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 4 src/duckdb/src/include/duckdb/parser/keyword_helper.hpp | 4 src/duckdb/src/include/duckdb/parser/parsed_data/alter_function_info.hpp |only src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp |only src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 36 src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 8 src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 9 src/duckdb/src/include/duckdb/parser/parsed_data/create_pragma_function_info.hpp | 1 src/duckdb/src/include/duckdb/parser/parsed_data/create_scalar_function_info.hpp | 23 src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 3 src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 11 src/duckdb/src/include/duckdb/parser/parser.hpp | 4 src/duckdb/src/include/duckdb/parser/query_node.hpp | 3 src/duckdb/src/include/duckdb/planner/bind_context.hpp | 4 src/duckdb/src/include/duckdb/planner/binder.hpp | 8 src/duckdb/src/include/duckdb/planner/constraints/bound_check_constraint.hpp | 3 src/duckdb/src/include/duckdb/planner/constraints/bound_foreign_key_constraint.hpp | 9 src/duckdb/src/include/duckdb/planner/constraints/bound_not_null_constraint.hpp | 4 src/duckdb/src/include/duckdb/planner/constraints/bound_unique_constraint.hpp | 7 src/duckdb/src/include/duckdb/planner/expression/bound_aggregate_expression.hpp | 10 src/duckdb/src/include/duckdb/planner/expression/bound_cast_expression.hpp | 13 src/duckdb/src/include/duckdb/planner/expression_binder/alter_binder.hpp | 4 src/duckdb/src/include/duckdb/planner/expression_binder/check_binder.hpp | 11 src/duckdb/src/include/duckdb/planner/expression_binder/returning_binder.hpp | 4 src/duckdb/src/include/duckdb/planner/expression_binder/select_binder.hpp | 4 src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 2 src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_create.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_create_index.hpp | 31 src/duckdb/src/include/duckdb/planner/operator/logical_create_table.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp | 3 src/duckdb/src/include/duckdb/planner/operator/logical_empty_result.hpp | 3 src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 3 src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 3 src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp |only src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 2 src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 7 src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 37 src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_set.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_simple.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp | 1 src/duckdb/src/include/duckdb/planner/operator/logical_update.hpp | 5 src/duckdb/src/include/duckdb/planner/operator_extension.hpp |only src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 4 src/duckdb/src/include/duckdb/planner/table_binding.hpp | 10 src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 2 src/duckdb/src/include/duckdb/storage/block.hpp | 5 src/duckdb/src/include/duckdb/storage/block_manager.hpp | 28 src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 51 src/duckdb/src/include/duckdb/storage/buffer/buffer_handle.hpp | 6 src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 62 src/duckdb/src/include/duckdb/storage/checkpoint/row_group_writer.hpp |only src/duckdb/src/include/duckdb/storage/checkpoint/table_data_writer.hpp | 58 src/duckdb/src/include/duckdb/storage/checkpoint/write_overflow_strings_to_disk.hpp | 6 src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 129 src/duckdb/src/include/duckdb/storage/compression |only src/duckdb/src/include/duckdb/storage/data_table.hpp | 132 src/duckdb/src/include/duckdb/storage/in_memory_block_manager.hpp | 10 src/duckdb/src/include/duckdb/storage/index.hpp | 29 src/duckdb/src/include/duckdb/storage/meta_block_reader.hpp | 6 src/duckdb/src/include/duckdb/storage/meta_block_writer.hpp | 17 src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp |only src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 20 src/duckdb/src/include/duckdb/storage/storage_info.hpp | 12 src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 71 src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 162 src/duckdb/src/include/duckdb/storage/table/append_state.hpp | 24 src/duckdb/src/include/duckdb/storage/table/chunk_info.hpp | 16 src/duckdb/src/include/duckdb/storage/table/column_checkpoint_state.hpp | 11 src/duckdb/src/include/duckdb/storage/table/column_data.hpp | 52 src/duckdb/src/include/duckdb/storage/table/column_data_checkpointer.hpp | 4 src/duckdb/src/include/duckdb/storage/table/column_segment.hpp | 37 src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp |only src/duckdb/src/include/duckdb/storage/table/list_column_data.hpp | 18 src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 65 src/duckdb/src/include/duckdb/storage/table/row_group_collection.hpp |only src/duckdb/src/include/duckdb/storage/table/scan_state.hpp | 107 src/duckdb/src/include/duckdb/storage/table/segment_base.hpp | 12 src/duckdb/src/include/duckdb/storage/table/segment_lock.hpp |only src/duckdb/src/include/duckdb/storage/table/segment_tree.hpp | 46 src/duckdb/src/include/duckdb/storage/table/standard_column_data.hpp | 18 src/duckdb/src/include/duckdb/storage/table/struct_column_data.hpp | 18 src/duckdb/src/include/duckdb/storage/table/table_index_list.hpp |only src/duckdb/src/include/duckdb/storage/table/table_statistics.hpp |only src/duckdb/src/include/duckdb/storage/table/update_segment.hpp | 6 src/duckdb/src/include/duckdb/storage/table/validity_column_data.hpp | 4 src/duckdb/src/include/duckdb/storage/table_io_manager.hpp |only src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 60 src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 152 src/duckdb/src/include/duckdb/transaction/transaction.hpp | 34 src/duckdb/src/include/duckdb/transaction/transaction_data.hpp |only src/duckdb/src/include/duckdb/transaction/transaction_manager.hpp | 14 src/duckdb/src/main/appender.cpp | 4 src/duckdb/src/main/capi/appender-c.cpp | 2 src/duckdb/src/main/capi/arrow-c.cpp | 2 src/duckdb/src/main/capi/cast |only src/duckdb/src/main/capi/config-c.cpp | 2 src/duckdb/src/main/capi/data_chunk-c.cpp | 2 src/duckdb/src/main/capi/datetime-c.cpp | 2 src/duckdb/src/main/capi/duckdb-c.cpp | 6 src/duckdb/src/main/capi/duckdb_value-c.cpp | 6 src/duckdb/src/main/capi/helper-c.cpp | 4 src/duckdb/src/main/capi/hugeint-c.cpp | 24 src/duckdb/src/main/capi/logical_types-c.cpp | 2 src/duckdb/src/main/capi/pending-c.cpp | 2 src/duckdb/src/main/capi/prepared-c.cpp | 27 src/duckdb/src/main/capi/replacement_scan-c.cpp | 14 src/duckdb/src/main/capi/result-c.cpp | 4 src/duckdb/src/main/capi/table_function-c.cpp | 2 src/duckdb/src/main/capi/threading-c.cpp | 2 src/duckdb/src/main/capi/value-c.cpp | 276 src/duckdb/src/main/client_context.cpp | 55 src/duckdb/src/main/client_data.cpp | 2 src/duckdb/src/main/client_verify.cpp | 24 src/duckdb/src/main/config.cpp | 42 src/duckdb/src/main/connection.cpp | 7 src/duckdb/src/main/database.cpp | 129 src/duckdb/src/main/db_instance_cache.cpp |only src/duckdb/src/main/error_manager.cpp |only src/duckdb/src/main/extension/extension_alias.cpp |only src/duckdb/src/main/extension/extension_helper.cpp | 36 src/duckdb/src/main/extension/extension_install.cpp | 5 src/duckdb/src/main/extension/extension_load.cpp | 79 src/duckdb/src/main/extension_prefix_opener.cpp |only src/duckdb/src/main/materialized_query_result.cpp | 2 src/duckdb/src/main/prepared_statement_data.cpp | 19 src/duckdb/src/main/query_profiler.cpp | 16 src/duckdb/src/main/query_result.cpp | 1 src/duckdb/src/main/relation.cpp | 10 src/duckdb/src/main/relation/create_view_relation.cpp | 9 src/duckdb/src/main/relation/distinct_relation.cpp | 2 src/duckdb/src/main/settings/settings.cpp | 36 src/duckdb/src/main/valid_checker.cpp |only src/duckdb/src/optimizer/cardinality_estimator.cpp | 50 src/duckdb/src/optimizer/deliminator.cpp | 250 src/duckdb/src/optimizer/estimated_properties.cpp | 12 src/duckdb/src/optimizer/expression_rewriter.cpp | 4 src/duckdb/src/optimizer/filter_combiner.cpp | 18 src/duckdb/src/optimizer/filter_pushdown.cpp | 4 src/duckdb/src/optimizer/in_clause_rewriter.cpp | 2 src/duckdb/src/optimizer/join_node.cpp | 8 src/duckdb/src/optimizer/join_order_optimizer.cpp | 22 src/duckdb/src/optimizer/optimizer.cpp | 10 src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 2 src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 10 src/duckdb/src/optimizer/remove_unused_columns.cpp | 64 src/duckdb/src/optimizer/rule/case_simplification.cpp | 4 src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 6 src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 4 src/duckdb/src/optimizer/rule/constant_folding.cpp | 2 src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 5 src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 2 src/duckdb/src/optimizer/rule/enum_comparison.cpp | 3 src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 4 src/duckdb/src/optimizer/rule/like_optimizations.cpp | 2 src/duckdb/src/optimizer/rule/move_constants.cpp | 8 src/duckdb/src/optimizer/rule/regex_optimizations.cpp | 2 src/duckdb/src/optimizer/statistics/expression/propagate_and_compress.cpp | 2 src/duckdb/src/optimizer/statistics/expression/propagate_cast.cpp | 2 src/duckdb/src/optimizer/statistics/expression/propagate_conjunction.cpp | 2 src/duckdb/src/parallel/event.cpp | 11 src/duckdb/src/parallel/executor.cpp | 376 src/duckdb/src/parallel/meta_pipeline.cpp |only src/duckdb/src/parallel/pipeline.cpp | 75 src/duckdb/src/parallel/pipeline_executor.cpp | 169 src/duckdb/src/parallel/pipeline_initialize_event.cpp |only src/duckdb/src/parallel/task_scheduler.cpp | 2 src/duckdb/src/parser/column_definition.cpp | 12 src/duckdb/src/parser/column_list.cpp |only src/duckdb/src/parser/constraints/foreign_key_constraint.cpp | 8 src/duckdb/src/parser/constraints/not_null_constraint.cpp | 6 src/duckdb/src/parser/constraints/unique_constraint.cpp | 8 src/duckdb/src/parser/expression/collate_expression.cpp | 2 src/duckdb/src/parser/expression/lambda_expression.cpp | 5 src/duckdb/src/parser/expression/star_expression.cpp | 25 src/duckdb/src/parser/expression/subquery_expression.cpp | 4 src/duckdb/src/parser/keyword_helper.cpp | 11 src/duckdb/src/parser/parsed_data/alter_function_info.cpp |only src/duckdb/src/parser/parsed_data/alter_info.cpp |only src/duckdb/src/parser/parsed_data/alter_table_info.cpp | 47 src/duckdb/src/parser/parsed_data/create_index_info.cpp | 21 src/duckdb/src/parser/parsed_data/create_info.cpp | 10 src/duckdb/src/parser/parsed_data/create_scalar_function_info.cpp |only src/duckdb/src/parser/parsed_data/create_table_info.cpp | 8 src/duckdb/src/parser/parser.cpp | 2 src/duckdb/src/parser/query_node.cpp | 20 src/duckdb/src/parser/statement/update_statement.cpp | 2 src/duckdb/src/parser/transform/constraint/transform_constraint.cpp | 6 src/duckdb/src/parser/transform/expression/transform_columnref.cpp | 7 src/duckdb/src/parser/transform/expression/transform_constant.cpp | 2 src/duckdb/src/parser/transform/helpers/transform_typename.cpp | 40 src/duckdb/src/parser/transform/statement/transform_create_function.cpp | 6 src/duckdb/src/parser/transform/statement/transform_create_table.cpp | 4 src/duckdb/src/parser/transform/statement/transform_create_type.cpp | 15 src/duckdb/src/parser/transform/statement/transform_show.cpp | 34 src/duckdb/src/planner/bind_context.cpp | 42 src/duckdb/src/planner/binder.cpp | 11 src/duckdb/src/planner/binder/expression/bind_aggregate_expression.cpp | 29 src/duckdb/src/planner/binder/expression/bind_between_expression.cpp | 6 src/duckdb/src/planner/binder/expression/bind_case_expression.cpp | 7 src/duckdb/src/planner/binder/expression/bind_cast_expression.cpp | 4 src/duckdb/src/planner/binder/expression/bind_collate_expression.cpp | 2 src/duckdb/src/planner/binder/expression/bind_columnref_expression.cpp | 30 src/duckdb/src/planner/binder/expression/bind_comparison_expression.cpp | 12 src/duckdb/src/planner/binder/expression/bind_conjunction_expression.cpp | 2 src/duckdb/src/planner/binder/expression/bind_function_expression.cpp | 9 src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 17 src/duckdb/src/planner/binder/expression/bind_subquery_expression.cpp | 2 src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 17 src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 90 src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 5 src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 28 src/duckdb/src/planner/binder/statement/bind_copy.cpp | 13 src/duckdb/src/planner/binder/statement/bind_create.cpp | 151 src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 129 src/duckdb/src/planner/binder/statement/bind_delete.cpp | 12 src/duckdb/src/planner/binder/statement/bind_execute.cpp | 2 src/duckdb/src/planner/binder/statement/bind_export.cpp | 6 src/duckdb/src/planner/binder/statement/bind_insert.cpp | 53 src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 4 src/duckdb/src/planner/binder/statement/bind_update.cpp | 39 src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 6 src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 5 src/duckdb/src/planner/binder/tableref/bind_expressionlistref.cpp | 3 src/duckdb/src/planner/binder/tableref/bind_named_parameters.cpp | 2 src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 11 src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 17 src/duckdb/src/planner/expression/bound_cast_expression.cpp | 45 src/duckdb/src/planner/expression_binder.cpp | 22 src/duckdb/src/planner/expression_binder/alter_binder.cpp | 10 src/duckdb/src/planner/expression_binder/check_binder.cpp | 27 src/duckdb/src/planner/expression_binder/column_alias_binder.cpp | 5 src/duckdb/src/planner/expression_binder/returning_binder.cpp | 10 src/duckdb/src/planner/expression_binder/select_binder.cpp | 40 src/duckdb/src/planner/logical_operator.cpp | 23 src/duckdb/src/planner/operator/logical_aggregate.cpp | 8 src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 4 src/duckdb/src/planner/operator/logical_create.cpp | 4 src/duckdb/src/planner/operator/logical_create_index.cpp | 22 src/duckdb/src/planner/operator/logical_create_table.cpp | 4 src/duckdb/src/planner/operator/logical_delete.cpp | 4 src/duckdb/src/planner/operator/logical_get.cpp | 44 src/duckdb/src/planner/operator/logical_insert.cpp | 6 src/duckdb/src/planner/operator/logical_limit.cpp | 1 src/duckdb/src/planner/operator/logical_limit_percent.cpp | 10 src/duckdb/src/planner/operator/logical_order.cpp | 7 src/duckdb/src/planner/operator/logical_pragma.cpp | 4 src/duckdb/src/planner/operator/logical_prepare.cpp | 4 src/duckdb/src/planner/operator/logical_set.cpp | 4 src/duckdb/src/planner/operator/logical_simple.cpp | 4 src/duckdb/src/planner/operator/logical_top_n.cpp | 9 src/duckdb/src/planner/operator/logical_update.cpp | 8 src/duckdb/src/planner/planner.cpp | 18 src/duckdb/src/planner/pragma_handler.cpp | 5 src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 14 src/duckdb/src/planner/table_binding.cpp | 49 src/duckdb/src/storage/arena_allocator.cpp | 18 src/duckdb/src/storage/block.cpp | 10 src/duckdb/src/storage/buffer/buffer_handle.cpp | 8 src/duckdb/src/storage/buffer_manager.cpp | 319 src/duckdb/src/storage/checkpoint/row_group_writer.cpp |only src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 13 src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 57 src/duckdb/src/storage/checkpoint/write_overflow_strings_to_disk.cpp | 9 src/duckdb/src/storage/checkpoint_manager.cpp | 244 src/duckdb/src/storage/compression/bitpacking.cpp | 30 src/duckdb/src/storage/compression/chimp |only src/duckdb/src/storage/compression/dictionary_compression.cpp | 8 src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 40 src/duckdb/src/storage/compression/fsst.cpp |only src/duckdb/src/storage/compression/patas.cpp |only src/duckdb/src/storage/compression/rle.cpp | 8 src/duckdb/src/storage/compression/string_uncompressed.cpp | 28 src/duckdb/src/storage/compression/validity_uncompressed.cpp | 28 src/duckdb/src/storage/data_table.cpp | 954 src/duckdb/src/storage/index.cpp | 25 src/duckdb/src/storage/local_storage.cpp | 843 src/duckdb/src/storage/meta_block_reader.cpp | 19 src/duckdb/src/storage/meta_block_writer.cpp | 30 src/duckdb/src/storage/partial_block_manager.cpp |only src/duckdb/src/storage/single_file_block_manager.cpp | 63 src/duckdb/src/storage/statistics/string_statistics.cpp | 4 src/duckdb/src/storage/storage_info.cpp | 2 src/duckdb/src/storage/storage_manager.cpp | 173 src/duckdb/src/storage/table/chunk_info.cpp | 19 src/duckdb/src/storage/table/column_checkpoint_state.cpp | 164 src/duckdb/src/storage/table/column_data.cpp | 261 src/duckdb/src/storage/table/column_data_checkpointer.cpp | 37 src/duckdb/src/storage/table/column_segment.cpp | 115 src/duckdb/src/storage/table/list_column_data.cpp | 114 src/duckdb/src/storage/table/row_group.cpp | 284 src/duckdb/src/storage/table/row_group_collection.cpp |only src/duckdb/src/storage/table/scan_state.cpp |only src/duckdb/src/storage/table/segment_tree.cpp | 151 src/duckdb/src/storage/table/standard_column_data.cpp | 50 src/duckdb/src/storage/table/struct_column_data.cpp | 57 src/duckdb/src/storage/table/table_statistics.cpp |only src/duckdb/src/storage/table/update_segment.cpp | 40 src/duckdb/src/storage/table/validity_column_data.cpp | 9 src/duckdb/src/storage/table_index_list.cpp |only src/duckdb/src/storage/wal_replay.cpp | 58 src/duckdb/src/storage/write_ahead_log.cpp | 12 src/duckdb/src/transaction/transaction.cpp | 86 src/duckdb/src/transaction/transaction_manager.cpp | 17 src/duckdb/src/verification/parsed_statement_verifier.cpp | 6 src/duckdb/third_party/fsst |only src/duckdb/third_party/httplib/httplib.hpp | 4 src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 6 src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 2 src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |26862 +++++----- src/duckdb/third_party/mbedtls/include/mbedtls_wrapper.hpp | 4 src/duckdb/third_party/mbedtls/mbedtls_wrapper.cpp | 29 src/duckdb/third_party/utf8proc/include/utf8proc_wrapper.hpp | 4 src/duckdb/third_party/utf8proc/utf8proc_wrapper.cpp | 63 src/duckdb/ub_src_catalog_catalog_entry.cpp | 2 src/duckdb/ub_src_common.cpp | 4 src/duckdb/ub_src_common_types.cpp | 4 src/duckdb/ub_src_execution_operator_aggregate.cpp | 2 src/duckdb/ub_src_execution_operator_persistent.cpp | 10 src/duckdb/ub_src_execution_operator_schema.cpp | 2 src/duckdb/ub_src_function.cpp | 2 src/duckdb/ub_src_function_cast.cpp |only src/duckdb/ub_src_function_scalar_union.cpp |only src/duckdb/ub_src_main.cpp | 8 src/duckdb/ub_src_main_capi_cast.cpp |only src/duckdb/ub_src_main_extension.cpp | 2 src/duckdb/ub_src_parallel.cpp | 4 src/duckdb/ub_src_parser.cpp | 2 src/duckdb/ub_src_parser_parsed_data.cpp | 6 src/duckdb/ub_src_storage.cpp | 4 src/duckdb/ub_src_storage_buffer.cpp | 2 src/duckdb/ub_src_storage_checkpoint.cpp | 2 src/duckdb/ub_src_storage_compression.cpp | 4 src/duckdb/ub_src_storage_compression_chimp.cpp |only src/duckdb/ub_src_storage_table.cpp | 6 src/register.cpp | 4 src/statement.cpp | 45 src/types.cpp | 3 tests/testthat/_snaps/types.md | 14 tests/testthat/helper-DBItest.R | 4 tests/testthat/test_arrow.R | 31 tests/testthat/test_backend-dbplyr__duckdb_connection.R | 30 tests/testthat/test_bind.R | 8 tests/testthat/test_config_keyvalue.R | 20 tests/testthat/test_dbinfo.R | 2 tests/testthat/test_explain.R | 10 tests/testthat/test_extensions.R | 2 tests/testthat/test_factor.R | 16 tests/testthat/test_fetch_arrow.R | 59 tests/testthat/test_integer64.R | 4 tests/testthat/test_interval.R |only tests/testthat/test_list.R | 2 tests/testthat/test_multi_statement.R | 10 tests/testthat/test_null_byte.R |only tests/testthat/test_parquet.R | 4 tests/testthat/test_read.R | 2 tests/testthat/test_readonly.R | 2 tests/testthat/test_register.R | 46 tests/testthat/test_register_arrow.R | 138 tests/testthat/test_register_readonly.R | 4 tests/testthat/test_relational.R | 62 tests/testthat/test_struct.R | 4 tests/testthat/test_tbl__duckdb_connection.R | 14 tests/testthat/test_timezone.R | 26 tests/testthat/test_types.R | 4 tests/testthat/test_viewer.R | 22 809 files changed, 30449 insertions(+), 24302 deletions(-)
Title: Regularized Linear Modeling with Tidy Data
Description: An extension to the 'R' tidy data environment for automated machine learning. The package allows fitting and cross validation of linear regression and classification algorithms on grouped data.
Author: Johann Pfitzinger [aut, cre]
Maintainer: Johann Pfitzinger <johann.pfitzinger@gmail.com>
Diff between tidyfit versions 0.5.1 dated 2022-10-31 and 0.6.0 dated 2022-11-25
DESCRIPTION | 15 MD5 | 139 ++++--- NAMESPACE | 4 NEWS.md | 12 R/check_method.R | 11 R/classify.R | 13 R/coef.tidyfit.models.R | 2 R/coef_methods.R | 126 ++++-- R/default_hp_grid.R | 5 R/fit_groups.R | 8 R/fitted.tidyfit.models.R | 2 R/fitted_methods.R | 67 +-- R/m.R | 24 + R/make_cross_val.R | 31 - R/model.adalasso.R | 12 R/model.bayes.R | 11 R/model.bma.R |only R/model.chisq.R |only R/model.cor.R |only R/model.enet.R | 2 R/model.gets.R |only R/model.mrmr.R |only R/model.pcr.R | 24 - R/model.plsr.R | 24 - R/model.relief.R |only R/model.rf.R |only R/model.subset.R | 7 R/model.svm.R |only R/model.tvp.R | 5 R/model_definition.R | 24 - R/post_process.R | 2 R/predict.tidyfit.models.R | 15 R/predict_methods.R | 140 +++++-- R/regress.R | 13 R/resid_methods.R | 44 -- R/residuals.tidyfit.models.R | 2 R/unnest.tidyfit.models.R |only R/utils.R | 63 +-- README.md | 278 +++++++++++---- build/vignette.rds |binary inst/doc/Accessing_Fitted_Model_Objects.html | 24 - inst/doc/Bootstrapping_Confidence_Intervals.R | 25 + inst/doc/Bootstrapping_Confidence_Intervals.Rmd | 37 + inst/doc/Bootstrapping_Confidence_Intervals.html | 104 ++++- inst/doc/Feature_Selection.R |only inst/doc/Feature_Selection.Rmd |only inst/doc/Feature_Selection.html |only inst/doc/Multinomial_Classification.R | 17 inst/doc/Multinomial_Classification.Rmd | 22 - inst/doc/Multinomial_Classification.html | 23 - inst/doc/Predicting_Boston_House_Prices.R | 15 inst/doc/Predicting_Boston_House_Prices.Rmd | 44 +- inst/doc/Predicting_Boston_House_Prices.html | 83 ++-- inst/doc/Rolling_Window_Time_Series_Regression.html | 48 +- inst/doc/Time-varying_parameters_vs_rolling_windows.html | 2 man/classify.Rd | 7 man/dot-model.adalasso.Rd | 3 man/dot-model.bma.Rd |only man/dot-model.chisq.Rd |only man/dot-model.cor.Rd |only man/dot-model.enet.Rd | 2 man/dot-model.gets.Rd |only man/dot-model.mrmr.Rd |only man/dot-model.pcr.Rd | 11 man/dot-model.plsr.Rd | 11 man/dot-model.relief.Rd |only man/dot-model.rf.Rd |only man/dot-model.svm.Rd |only man/figures/README-unnamed-chunk-14-1.png |binary man/m.Rd | 23 + man/regress.Rd | 7 vignettes/Bootstrapping_Confidence_Intervals.Rmd | 37 + vignettes/FRED-MD.rds |only vignettes/Feature_Selection.Rmd |only vignettes/Multinomial_Classification.Rmd | 22 - vignettes/Predicting_Boston_House_Prices.Rmd | 44 +- vignettes/vignette_bci.rds |binary vignettes/vignette_fs.rds |only vignettes/vignette_mc.rds |binary vignettes/vignette_pbhp.rds |binary vignettes/vignette_rwtsr.rds |binary vignettes/vignette_tvpvsrw.rds |binary 82 files changed, 1136 insertions(+), 600 deletions(-)
Title: Mobile Ready 'shiny' Apps with Standalone Capabilities
Description: Develop outstanding 'shiny' apps for 'iOS', 'Android', desktop as well as beautiful 'shiny' gadgets.
'shinyMobile' is built on top of the latest 'Framework7' template <https://framework7.io>.
Discover 14 new input widgets (sliders, vertical sliders, stepper,
grouped action buttons, toggles, picker, smart select, ...), 2 themes (light and dark),
12 new widgets (expandable cards, badges, chips, timelines, gauges, progress bars, ...)
combined with the power of server-side notifications such as alerts, modals, toasts,
action sheets, sheets (and more) as well as 3 layouts (single, tabs and split).
Author: David Granjon [aut, cre],
Victor Perrier [aut],
John Coene [ctb],
Isabelle Rudolf [aut],
Dieter Menne [ctb],
Marvelapp [ctb, cph] ,
Vladimir Kharlampidi [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between shinyMobile versions 0.9.1 dated 2021-09-16 and 1.0.0 dated 2022-11-25
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Title: Dose-Response Data Analysis
Description: Fit logistic functions to observed dose-response continuous
data and evaluate goodness-of-fit measures. See Malyutina A., Tang J.,
and Pessia A. (2021) <doi:10.1101/2021.06.07.447323>.
Author: Alberto Pessia [aut, cre] ,
Alina Malyutina [ctb]
Maintainer: Alberto Pessia <dev@albertopessia.com>
Diff between drda versions 2.0.1 dated 2022-07-08 and 2.0.2 dated 2022-11-25
DESCRIPTION | 8 +-- MD5 | 14 +++--- R/drda.R | 4 - R/plot.R | 122 +++++++++++++++++++++++++++++++++++++++-------------- build/vignette.rds |binary data/voropm2.rda |binary inst/doc/drda.pdf |binary man/plot.drda.Rd | 2 8 files changed, 106 insertions(+), 44 deletions(-)
Title: Agreement Measures for 3D Meshes
Description: Calculates distance-based and volume-overlap-based
agreement measures for triangular 3D meshes. These include
the Hausdorff distance, the average surface distance, the
Dice similarity coefficient, and the Jaccard similarity
coefficient as documented in Stockinger et al. (2021)
<doi:10.1186/s13014-021-01965-5>. Overall agreement for
a set of meshes is calculated as the aggregate agreement
for all pairwise comparisons. Based on algorithms
provided by the 'VCGLIB' <http://vcg.isti.cnr.it/vcglib/>
and 'CGAL' <https://www.cgal.org/> libraries.
Includes web-based graphical user interface.
Author: Daniel Wollschlaeger [aut, cre],
Heiko Karle [aut]
Maintainer: Daniel Wollschlaeger <wollschlaeger@uni-mainz.de>
Diff between MeshAgreement versions 0.1.2 dated 2022-11-16 and 0.1.4 dated 2022-11-25
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Title: Diversity-Interactions (DI) Models
Description: The 'DImodels' package is suitable for analysing data from biodiversity and ecosystem function studies using the Diversity-Interactions (DI) modelling approach introduced by Kirwan et al. (2009) <doi:10.1890/08-1684.1>. Suitable data will contain proportions for each species and a community-level response variable, and may also include additional factors, such as blocks or treatments. The package can perform data manipulation tasks, such as computing pairwise interactions (the DI_data() function), can perform an automated model selection process (the autoDI() function) and has the flexibility to fit a wide range of user-defined DI models (the DI() function).
Author: Rafael de Andrade Moral [aut, cre],
John Connolly [aut],
Rishabh Vishwakarma [ctb],
Caroline Brophy [aut]
Maintainer: Rafael de Andrade Moral <rafael.deandrademoral@mu.ie>
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Title: Functions to Assist Design and Analysis of Agronomic Experiments
Description: Provides functions to aid in the design and analysis of
agronomic and agricultural experiments through easy access to
documentation and helper functions, especially for users who are
learning these concepts. While not required for most functionality,
this package enhances the `asreml` package which provides a
computationally efficient algorithm for fitting mixed models
using Residual Maximum Likelihood. It is a commercial package
that can be purchased as 'asreml-R' from 'VSNi'
<https://vsni.co.uk/>, who will supply a zip file for local
installation/updating (see <https://asreml.kb.vsni.co.uk/>).
Author: Sharon Nielsen [aut],
Sam Rogers [aut, cre],
Annie Conway [aut],
University of Adelaide [cph, fnd] ,
Grains Research and Development Corporation [cph, fnd]
Maintainer: Sam Rogers <biometrytraining@adelaide.edu.au>
Diff between biometryassist versions 1.1.1 dated 2022-10-27 and 1.1.2 dated 2022-11-25
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More information about biometryassist at CRAN
Permanent link
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Remi Theriault [ctb] ,
Martin Jullum [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.10.0 dated 2022-10-03 and 0.10.1 dated 2022-11-25
DESCRIPTION | 27 - MD5 | 176 ++++----- NAMESPACE | 1 NEWS.md | 36 + R/check_distribution.R | 5 R/check_heterogeneity_bias.R | 2 R/check_heteroscedasticity.R | 2 R/check_homogeneity.R | 4 R/check_htest.R | 22 - R/check_model.R | 4 R/check_model_diagnostics.R | 34 + R/check_normality.R | 8 R/check_outliers.R | 69 +-- R/check_overdispersion.R | 10 R/check_symmetry.R | 4 R/compare_performance.R | 27 - R/display.R | 4 R/format.R | 2 R/get_gradients.R | 8 R/helpers.R | 10 R/icc.R | 440 +++++++++++++++-------- R/item_difficulty.R | 4 R/item_reliability.R | 6 R/logLik.R | 39 -- R/model_performance.R | 11 R/model_performance.bayesian.R | 26 - R/model_performance.lm.R | 111 ++--- R/model_performance.mixed.R | 9 R/model_performance_default.R | 10 R/performance_aicc.R | 4 R/performance_hosmer.R | 2 R/performance_logloss.R | 2 R/performance_mse.R | 14 R/performance_pcp.R | 72 --- R/performance_rmse.R | 2 R/performance_roc.R | 2 R/performance_score.R | 14 R/pp_check.R | 16 R/print-methods.R | 73 +-- R/print_md.R | 98 ++--- R/r2.R | 93 +++- R/r2_bayes.R | 41 +- R/r2_ci.R | 14 R/r2_coxsnell.R | 2 R/r2_efron.R | 4 R/r2_loo.R | 10 R/r2_mcfadden.R | 9 R/r2_mckelvey.R | 9 R/r2_nagelkerke.R | 2 R/r2_nakagawa.R | 222 ++++++++--- R/r2_tjur.R | 6 R/r2_zeroinflated.R | 2 R/sysdata.rda |binary R/test_bf.R | 4 R/test_likelihoodratio.R | 2 R/test_performance.R | 25 - R/test_wald.R | 13 README.md | 43 -- build/partial.rdb |binary man/check_outliers.Rd | 31 - man/check_overdispersion.Rd | 2 man/display.performance_model.Rd | 2 man/figures/unnamed-chunk-14-1.png |binary man/figures/unnamed-chunk-20-1.png |binary man/icc.Rd | 143 ++++--- man/model_performance.lm.Rd | 22 - man/performance_pcp.Rd | 12 man/performance_rmse.Rd | 2 man/performance_score.Rd | 10 man/r2.Rd | 24 - man/r2_bayes.Rd | 4 man/r2_efron.Rd | 4 man/r2_mcfadden.Rd | 1 man/r2_mckelvey.Rd | 6 man/r2_nakagawa.Rd | 37 + man/r2_tjur.Rd | 5 man/test_performance.Rd | 7 tests/testthat/test-check_collinearity.R | 4 tests/testthat/test-check_model.R |only tests/testthat/test-check_normality.R | 2 tests/testthat/test-check_outliers.R | 299 +++++++++++++++ tests/testthat/test-check_overdispersion.R | 2 tests/testthat/test-compare_performance.R | 10 tests/testthat/test-icc.R | 32 + tests/testthat/test-model_performance.bayesian.R | 8 tests/testthat/test-model_performance.lm.R | 6 tests/testthat/test-r2.R |only tests/testthat/test-r2_nakagawa.R | 21 + tests/testthat/test-test_likelihoodratio.R | 206 +++++----- tests/testthat/test-test_wald.R | 83 ++-- 90 files changed, 1759 insertions(+), 1137 deletions(-)
Title: Alpha Hull Computation
Description: Computation of the alpha hull of a set of points in the 3D
space, that is to say "something like the shape formed by these
points". The alpha hull depends on a positive parameter alpha. When
alpha goes to zero, the alpha hull degenerates to the set of points,
while it is the convex hull of the set of points when alpha goes to
infinity. Computations are performed by the 'CGAL' 'C++' library
<https://www.cgal.org/>.
Author: Stephane Laurent [aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between AlphaHull3D versions 1.1.0 dated 2022-10-24 and 2.0.0 dated 2022-11-25
AlphaHull3D-1.1.0/AlphaHull3D/R/FAS.R |only AlphaHull3D-1.1.0/AlphaHull3D/src/alphahull3d.h |only AlphaHull3D-2.0.0/AlphaHull3D/DESCRIPTION | 10 - AlphaHull3D-2.0.0/AlphaHull3D/MD5 | 26 +- AlphaHull3D-2.0.0/AlphaHull3D/NAMESPACE | 3 AlphaHull3D-2.0.0/AlphaHull3D/NEWS.md | 5 AlphaHull3D-2.0.0/AlphaHull3D/R/FixedAS.R |only AlphaHull3D-2.0.0/AlphaHull3D/R/FullAS.R |only AlphaHull3D-2.0.0/AlphaHull3D/R/RcppExports.R | 16 + AlphaHull3D-2.0.0/AlphaHull3D/R/data-gissid.R |only AlphaHull3D-2.0.0/AlphaHull3D/R/internal.R |only AlphaHull3D-2.0.0/AlphaHull3D/data |only AlphaHull3D-2.0.0/AlphaHull3D/man/ahull3d.Rd | 11 - AlphaHull3D-2.0.0/AlphaHull3D/man/fullAhull3d.Rd |only AlphaHull3D-2.0.0/AlphaHull3D/man/gissid.Rd |only AlphaHull3D-2.0.0/AlphaHull3D/man/optimal.Rd |only AlphaHull3D-2.0.0/AlphaHull3D/man/setAlpha.Rd |only AlphaHull3D-2.0.0/AlphaHull3D/src/AlphaHull3D_types.h |only AlphaHull3D-2.0.0/AlphaHull3D/src/RcppExports.cpp | 51 +++++ AlphaHull3D-2.0.0/AlphaHull3D/src/alphahull3d.cpp | 167 +++++++++++++++++- 20 files changed, 272 insertions(+), 17 deletions(-)
Title: Check, Install and Load CRAN & USGS GRAN Packages
Description: The function 'install_load' checks the local R library(ies) to see
if the required package(s) is/are installed or not. If the package(s)
is/are not installed, then the package(s) will be installed along with
the required dependency(ies). This function pulls source or
binary packages from the Rstudio-sponsored CRAN mirror and/or
the USGS GRAN Repository. Lastly, the chosen package(s)
is/are loaded. The function 'load_package' simply loads the provided
packages. If this package does not fit your needs, then you may want to
consider these other R packages: 'needs', 'easypackages', 'pacman', 'pak',
'anyLib', and/or 'librarian'.
Author: maloneypatr [aut, cre], Irucka Embry [aut, ctb]
Maintainer: Irucka Embry <iembry@ecoccs.com>
Diff between install.load versions 1.2.3 dated 2020-06-02 and 1.2.4 dated 2022-11-25
DESCRIPTION | 15 ++++++++------- MD5 | 16 ++++++++-------- NAMESPACE | 5 +++-- NEWS.md | 5 +++++ R/install.load.R | 7 ++++--- R/install_load.R | 8 ++++---- R/load_package.R | 4 ++-- man/install_load.Rd | 4 ++-- man/load_package.Rd | 4 ++-- 9 files changed, 38 insertions(+), 30 deletions(-)
Title: Bayesian Spatial Blind Source Separation
Description: Gibbs sampling for Bayesian spatial blind source separation (BSP-BSS). BSP-BSS is designed for spatially dependent signals in high dimensional and large-scale data, such as neuroimaging. The method assumes the expectation of the observed images as a linear mixture of multiple sparse and piece-wise smooth latent source signals, and constructs a Bayesian nonparametric prior by thresholding Gaussian processes. Details can be found in our paper: Wu et al. (2022+) "Bayesian Spatial Blind Source Separation via the Thresholded Gaussian Process" <doi:10.1080/01621459.2022.2123336>.
Author: Ben Wu [aut, cre],
Ying Guo [aut],
Jian Kang [aut]
Maintainer: Ben Wu <wuben@ruc.edu.cn>
Diff between BSPBSS versions 1.0.4 dated 2022-10-01 and 1.0.5 dated 2022-11-25
DESCRIPTION | 11 ++--- MD5 | 18 ++++----- NAMESPACE | 1 R/init_bspbss.R | 14 ++++--- R/mcmc_bspbss.R | 15 ++++++- build/vignette.rds |binary inst/doc/BSPBSS-vignette.html | 82 +++++++++++++++++++++--------------------- man/init_bspbss.Rd | 7 ++- man/mcmc_bspbss.Rd | 15 ++++++- src/Rcpp.cpp | 7 ++- 10 files changed, 97 insertions(+), 73 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-04-26 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-02-28 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-09 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-05 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-15 0.5-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-11 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-27 0.3.8
2020-08-07 0.3.7