Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.7.0 dated 2022-10-28 and 0.7.1 dated 2022-11-29
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/BasicUtil.R | 2 +- inst/NEWS.Rd | 8 +++++++- inst/doc/wnl-manual.pdf |binary man/nlr.Rd | 46 +++++++++++++++++++++++----------------------- 6 files changed, 39 insertions(+), 33 deletions(-)
Title: Calculates Conditional Mahalanobis Distances
Description: Calculates a Mahalanobis distance for every row of a set of
outcome variables (Mahalanobis, 1936
<doi:10.1007/s13171-019-00164-5>). The conditional Mahalanobis
distance is calculated using a conditional covariance matrix (i.e., a
covariance matrix of the outcome variables after controlling for a set
of predictors). Plotting the output of the cond_maha() function can
help identify which elements of a profile are unusual after
controlling for the predictors.
Author: W. Joel Schneider [aut, cre] ,
Feng Ji [aut]
Maintainer: W. Joel Schneider <w.joel.schneider@gmail.com>
Diff between unusualprofile versions 0.1.0 dated 2021-05-13 and 0.1.1 dated 2022-11-29
unusualprofile-0.1.0/unusualprofile/inst/doc/tutorial_unusualprofile.R |only unusualprofile-0.1.0/unusualprofile/inst/doc/tutorial_unusualprofile.Rmd |only unusualprofile-0.1.0/unusualprofile/inst/doc/tutorial_unusualprofile.html |only unusualprofile-0.1.0/unusualprofile/man/figures/README-example-1.svg |only unusualprofile-0.1.0/unusualprofile/man/figures/example-1.svg |only unusualprofile-0.1.0/unusualprofile/vignettes/tutorial_unusualprofile.Rmd |only unusualprofile-0.1.1/unusualprofile/DESCRIPTION | 51 - unusualprofile-0.1.1/unusualprofile/MD5 | 31 unusualprofile-0.1.1/unusualprofile/NEWS.md | 8 unusualprofile-0.1.1/unusualprofile/R/main.R | 440 +++++--- unusualprofile-0.1.1/unusualprofile/README.md | 32 unusualprofile-0.1.1/unusualprofile/build/vignette.rds |binary unusualprofile-0.1.1/unusualprofile/inst/doc/unusualprofile_calculations.R | 115 +- unusualprofile-0.1.1/unusualprofile/inst/doc/unusualprofile_calculations.Rmd | 119 +- unusualprofile-0.1.1/unusualprofile/inst/doc/unusualprofile_calculations.html | 509 +++++++--- unusualprofile-0.1.1/unusualprofile/man/cond_maha.Rd | 58 - unusualprofile-0.1.1/unusualprofile/man/figures/README-example-1.png |binary unusualprofile-0.1.1/unusualprofile/man/figures/logo.png |only unusualprofile-0.1.1/unusualprofile/tests/testthat/test-main.R | 126 +- unusualprofile-0.1.1/unusualprofile/vignettes/unusualprofile_calculations.Rmd | 119 +- 20 files changed, 1070 insertions(+), 538 deletions(-)
More information about unusualprofile at CRAN
Permanent link
Title: An Implementation of Z-Curves
Description: An implementation of z-curves - a method for estimating expected discovery
and replicability rates on the bases of test-statistics of published studies. The package
provides functions for fitting the new density and EM version
(Bartoš & Schimmack, 2020, <doi:10.31234/osf.io/urgtn>), censored observations,
as well as the original density z-curve (Brunner & Schimmack, 2020, <doi:10.15626/MP.2018.874>).
Furthermore, the package provides summarizing and plotting functions for the fitted z-curve objects.
See the aforementioned articles for more information about the z-curves, expected discovery
and replicability rates, validation studies, and limitations.
Author: Frantisek Bartos [aut, cre],
Ulrich Schimmack [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between zcurve versions 2.1.2 dated 2022-02-07 and 2.2.0 dated 2022-11-29
DESCRIPTION | 8 MD5 | 33 +- NAMESPACE | 1 R/RcppExports.R | 12 R/data-preparation.R | 66 +++- R/main.R | 10 R/zcurve_EM.R | 10 R/zcurve_clustered.R |only build/partial.rdb |binary man/zcurve-package.Rd | 2 man/zcurve_clustered.Rd |only man/zcurve_data.Rd | 4 src/RcppExports.cpp | 59 ++++ src/zcurveEM.cpp | 178 ++++++++++++- tests/testthat/_snaps/zcurve/z-curve-cens-em.svg | 6 tests/testthat/_snaps/zcurve/z-curve-clustered-mixed.svg |only tests/testthat/_snaps/zcurve/z-curve-clustered-precise.svg |only tests/testthat/_snaps/zcurve/z-curve-clustered-rounded.svg |only tests/testthat/_snaps/zcurve/z-curve-mixed-em.svg | 4 tests/testthat/test-zcurve.R | 160 +++++++++++ 20 files changed, 486 insertions(+), 67 deletions(-)
Title: Interface to 'D4Science' 'StorageHub' API
Description: Provides an interface to 'D4Science' 'StorageHub' API (<https://dev.d4science.org/>). Allows to get user profile, and perform
actions over the 'StorageHub' (workspace) including creation of folders, files management (upload/update/deletion/sharing), and listing of
stored resources.
Author: Emmanuel Blondel [aut, cre]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between d4storagehub4R versions 0.4-1 dated 2022-08-19 and 0.4-2 dated 2022-11-29
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 8 +++++++- R/StoragehubManager.R | 31 ++++++++++++++++++++----------- man/StoragehubManager.Rd | 21 +++++++++++++++++++++ 5 files changed, 56 insertions(+), 20 deletions(-)
More information about d4storagehub4R at CRAN
Permanent link
Title: A General Algorithm to Enhance the Performance of Variable
Selection Methods in Correlated Datasets
Description: An implementation of the selectboost algorithm (Bertrand et al. 2020, 'Bioinformatics', <doi:10.1093/bioinformatics/btaa855>), which is a general algorithm that improves the precision of any existing variable selection method. This algorithm is based on highly intensive simulations and takes into account the correlation structure of the data. It can either produce a confidence index for variable selection or it can be used in an experimental design planning perspective.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut] ,
Ismail Aouadi [ctb],
Nicolas Jung [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand@math.unistra.fr>
Diff between SelectBoost versions 2.2.0 dated 2021-03-20 and 2.2.1 dated 2022-11-29
DESCRIPTION | 18 MD5 | 90 - NAMESPACE | 1 NEWS.md | 4 R/BIC_AICc_glmnet.R | 2 R/SelectBoost-package.R | 1 R/autoboost.R | 16 R/boost.R | 2 R/group_func_1.R | 2 R/group_func_2.R | 2 R/lasso_cv.R | 4 R/miscplots.R | 2 R/plot_selectboost_microarray.R | 2 R/selectboost_microarray.R | 2 R/simulation.R | 2 README.md | 855 ++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/benchmarking-selectboost-networks.R | 761 ++++++++++++++++ inst/doc/benchmarking-selectboost-networks.Rmd | 2 inst/doc/benchmarking-selectboost-networks.html | 361 ++++++- inst/doc/confidence-indices-Cascade-networks.R | 103 ++ inst/doc/confidence-indices-Cascade-networks.Rmd | 2 inst/doc/confidence-indices-Cascade-networks.html | 427 +++++++-- inst/doc/sim-with-sb.R | 419 +++++++++ inst/doc/sim-with-sb.html | 1015 ++++++++++++++++++---- man/AICc_BIC_glmnetB.Rd | 2 man/auto.analyze.Rd | 2 man/autoboost.Rd | 2 man/boost.Rd | 2 man/fastboost.Rd | 2 man/force.non.inc.Rd | 2 man/group_func_1.Rd | 2 man/group_func_2.Rd | 2 man/miscplot.Rd | 2 man/plot.selectboost.Rd | 2 man/plot.summary.selectboost.Rd | 2 man/plot_selectboost_cascade.Rd | 2 man/selectboost_cascade.Rd | 2 man/simulation.Rd | 2 man/summary.selectboost.Rd | 2 man/trajC0.Rd | 2 man/var_select.Rd | 2 man/var_select_all.Rd | 2 vignettes/benchmarking-selectboost-networks.Rmd | 2 vignettes/confidence-indices-Cascade-networks.Rmd | 2 46 files changed, 3307 insertions(+), 828 deletions(-)
Title: Framework for Easy Statistical Modeling, Visualization, and
Reporting
Description: A meta-package that installs and loads a set of packages from
'easystats' ecosystem in a single step. This collection of packages provide
a unifying and consistent framework for statistical modeling, visualization,
and reporting. Additionally, it provides articles targeted at instructors for
teaching 'easystats', and a dashboard targeted at new R users for easily
conducting statistical analysis by accessing summary results, model fit indices,
and visualizations with minimal programming.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Brenton M. Wiernik [aut]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between easystats versions 0.5.2 dated 2022-08-30 and 0.6.0 dated 2022-11-29
easystats-0.5.2/easystats/R/CRAN_checks.R |only easystats-0.5.2/easystats/R/on_CRAN.r |only easystats-0.5.2/easystats/man/CRAN_checks.Rd |only easystats-0.5.2/easystats/man/on_CRAN.Rd |only easystats-0.6.0/easystats/DESCRIPTION | 22 easystats-0.6.0/easystats/MD5 | 49 easystats-0.6.0/easystats/NAMESPACE | 2 easystats-0.6.0/easystats/NEWS.md | 26 easystats-0.6.0/easystats/R/easystats-package.R |only easystats-0.6.0/easystats/R/install_easystats.R | 32 easystats-0.6.0/easystats/R/install_suggested.R | 9 easystats-0.6.0/easystats/R/utils.R | 100 easystats-0.6.0/easystats/R/zzz.R | 13 easystats-0.6.0/easystats/README.md | 135 easystats-0.6.0/easystats/build/vignette.rds |binary easystats-0.6.0/easystats/inst/CITATION | 2 easystats-0.6.0/easystats/inst/doc/citation.html | 260 + easystats-0.6.0/easystats/inst/doc/conventions.html | 283 + easystats-0.6.0/easystats/inst/doc/list_of_functions.R | 3 easystats-0.6.0/easystats/inst/doc/list_of_functions.Rmd | 3 easystats-0.6.0/easystats/inst/doc/list_of_functions.html | 2713 ++++++++---- easystats-0.6.0/easystats/inst/doc/resources.html | 246 - easystats-0.6.0/easystats/inst/templates/easydashboard.Rmd | 167 easystats-0.6.0/easystats/man/easystats-package.Rd |only easystats-0.6.0/easystats/man/figures/depnetwork-1.png |binary easystats-0.6.0/easystats/man/figures/unnamed-chunk-7-1.png |only easystats-0.6.0/easystats/man/install_latest.Rd | 18 easystats-0.6.0/easystats/man/install_suggested.Rd | 2 easystats-0.6.0/easystats/vignettes/list_of_functions.Rmd | 3 29 files changed, 2945 insertions(+), 1143 deletions(-)
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 0.1.0 dated 2022-09-29 and 0.3.0 dated 2022-11-29
CDMConnector-0.1.0/CDMConnector/R/utils-pipe.R |only CDMConnector-0.1.0/CDMConnector/inst/doc/CDMConnector_and_Dbplyr.R |only CDMConnector-0.1.0/CDMConnector/inst/doc/CDMConnector_and_Dbplyr.Rmd |only CDMConnector-0.1.0/CDMConnector/inst/doc/CDMConnector_and_Dbplyr.html |only CDMConnector-0.1.0/CDMConnector/inst/duckdb |only CDMConnector-0.1.0/CDMConnector/vignettes/CDMConnector_and_Dbplyr.Rmd |only CDMConnector-0.3.0/CDMConnector/DESCRIPTION | 20 CDMConnector-0.3.0/CDMConnector/MD5 | 106 ++- CDMConnector-0.3.0/CDMConnector/NAMESPACE | 25 CDMConnector-0.3.0/CDMConnector/NEWS.md | 18 CDMConnector-0.3.0/CDMConnector/R/cdm.R | 276 +++++++++- CDMConnector-0.3.0/CDMConnector/R/computePermanent.R |only CDMConnector-0.3.0/CDMConnector/R/date-functions.R |only CDMConnector-0.3.0/CDMConnector/R/generate.R |only CDMConnector-0.3.0/CDMConnector/R/listTables.R | 6 CDMConnector-0.3.0/CDMConnector/R/readCohortSet.R |only CDMConnector-0.3.0/CDMConnector/R/sysdata.rda |binary CDMConnector-0.3.0/CDMConnector/R/utils.R |only CDMConnector-0.3.0/CDMConnector/R/validate.R | 125 ++++ CDMConnector-0.3.0/CDMConnector/README.md | 59 +- CDMConnector-0.3.0/CDMConnector/build/vignette.rds |binary CDMConnector-0.3.0/CDMConnector/inst/WORDLIST |only CDMConnector-0.3.0/CDMConnector/inst/cohorts1 |only CDMConnector-0.3.0/CDMConnector/inst/cohorts2 |only CDMConnector-0.3.0/CDMConnector/inst/csv/OMOP_CDMv5.3_Field_Level.csv |only CDMConnector-0.3.0/CDMConnector/inst/csv/OMOP_CDMv5.3_Table_Level.csv |only CDMConnector-0.3.0/CDMConnector/inst/csv/OMOP_CDMv5.4_Table_Level.csv | 4 CDMConnector-0.3.0/CDMConnector/inst/doc/DBI_connection_examples.html | 111 +--- CDMConnector-0.3.0/CDMConnector/inst/doc/SQL.html | 111 +--- CDMConnector-0.3.0/CDMConnector/inst/doc/cdm_reference_backends.R | 5 CDMConnector-0.3.0/CDMConnector/inst/doc/cdm_reference_backends.Rmd | 5 CDMConnector-0.3.0/CDMConnector/inst/doc/cdm_reference_backends.html | 127 ++-- CDMConnector-0.3.0/CDMConnector/inst/doc/dbplyr.R |only CDMConnector-0.3.0/CDMConnector/inst/doc/dbplyr.Rmd |only CDMConnector-0.3.0/CDMConnector/inst/doc/dbplyr.html |only CDMConnector-0.3.0/CDMConnector/inst/doc/getting-started.R | 39 + CDMConnector-0.3.0/CDMConnector/inst/doc/getting-started.Rmd | 55 + CDMConnector-0.3.0/CDMConnector/inst/doc/getting-started.html | 183 ++++-- CDMConnector-0.3.0/CDMConnector/man/addCohortTable.Rd |only CDMConnector-0.3.0/CDMConnector/man/appendPermanent.Rd |only CDMConnector-0.3.0/CDMConnector/man/assert_tables.Rd |only CDMConnector-0.3.0/CDMConnector/man/assert_write_schema.Rd |only CDMConnector-0.3.0/CDMConnector/man/cdmFromCon.Rd |only CDMConnector-0.3.0/CDMConnector/man/cdmFromFiles.Rd |only CDMConnector-0.3.0/CDMConnector/man/cdm_from_con.Rd | 10 CDMConnector-0.3.0/CDMConnector/man/cdm_from_files.Rd | 2 CDMConnector-0.3.0/CDMConnector/man/computePermanent.Rd |only CDMConnector-0.3.0/CDMConnector/man/dateadd.Rd |only CDMConnector-0.3.0/CDMConnector/man/datediff.Rd |only CDMConnector-0.3.0/CDMConnector/man/eunomia_dir.Rd | 8 CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-archived.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-defunct.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-deprecated.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-experimental.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-maturing.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-questioning.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-stable.svg |only CDMConnector-0.3.0/CDMConnector/man/figures/lifecycle-superseded.svg |only CDMConnector-0.3.0/CDMConnector/man/generateCohortSet.Rd |only CDMConnector-0.3.0/CDMConnector/man/pipe.Rd | 2 CDMConnector-0.3.0/CDMConnector/man/readCohortSet.Rd |only CDMConnector-0.3.0/CDMConnector/man/snapshot.Rd |only CDMConnector-0.3.0/CDMConnector/man/tbl_group.Rd | 2 CDMConnector-0.3.0/CDMConnector/man/validate_cdm.Rd | 8 CDMConnector-0.3.0/CDMConnector/man/version.Rd |only CDMConnector-0.3.0/CDMConnector/tests/testthat/test-DBI.R |only CDMConnector-0.3.0/CDMConnector/tests/testthat/test-cdm.R | 194 ++++++- CDMConnector-0.3.0/CDMConnector/tests/testthat/test-computePermanent.R |only CDMConnector-0.3.0/CDMConnector/tests/testthat/test-date-functions.R |only CDMConnector-0.3.0/CDMConnector/tests/testthat/test-dbConnectDetails.R | 77 ++ CDMConnector-0.3.0/CDMConnector/tests/testthat/test-generateCohortSet.R |only CDMConnector-0.3.0/CDMConnector/tests/testthat/test-validate.R | 45 + CDMConnector-0.3.0/CDMConnector/vignettes/cdm_reference_backends.Rmd | 5 CDMConnector-0.3.0/CDMConnector/vignettes/dbplyr.Rmd |only CDMConnector-0.3.0/CDMConnector/vignettes/getting-started.Rmd | 55 + 75 files changed, 1304 insertions(+), 379 deletions(-)
Title: Strategy Estimation
Description: Variants of strategy estimation (Dal Bo & Frechette, 2011, <doi:10.1257/aer.101.1.411>), including the model with parameters for the choice probabilities of the strategies (Breitmoser, 2015, <doi:10.1257/aer.20130675>), and the model with individual level covariates for the selection of strategies by individuals (Dvorak & Fehrler, 2018, <doi:10.2139/ssrn.2986445>).
Author: Fabian Dvorak
Maintainer: Fabian Dvorak <fabian.dvorak@uni.kn>
Diff between stratEst versions 1.1.5 dated 2022-11-09 and 1.1.6 dated 2022-11-29
DESCRIPTION | 8 +-- MD5 | 14 +++--- R/stratEst_data.R | 92 +++++++++++++++++++++++++++-------------- R/stratEst_test.R | 16 ++++--- R/summary_stratEst_model.R | 16 ++++--- man/stratEst.data.Rd | 2 man/stratEst.test.Rd | 3 + tests/testthat/tests.paper.R | 96 ++++++++++++++++++++++++++++++++++++++++++- 8 files changed, 193 insertions(+), 54 deletions(-)
Title: Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Description: Tools for retrieving, organizing, and analyzing environmental
data from the System Wide Monitoring Program of the National Estuarine
Research Reserve System <http://cdmo.baruch.sc.edu/>. These tools
address common challenges associated with continuous time series data
for environmental decision making.
Author: Marcus W. Beck [aut, cre],
Kimberly Cressman [ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between SWMPr versions 2.4.1 dated 2021-09-02 and 2.4.2 dated 2022-11-29
DESCRIPTION | 10 - MD5 | 32 +-- NAMESPACE | 2 NEWS.md | 14 + R/aggremetab.R | 2 R/aggreswmp.R | 2 R/comb.R | 4 R/decomp_cj.R | 2 R/globalVariables.R | 2 R/plot_quants.R | 6 R/plot_summary.R | 102 ++++++++--- R/qaqc.R | 16 + R/setstep.R | 6 build/vignette.rds |binary inst/doc/Overview.html | 447 ++++++++++++++++++++++++++++++++++++++----------- man/decomp_cj.Rd | 2 man/plot_summary.Rd | 12 + 17 files changed, 509 insertions(+), 152 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.48550/arXiv.2203.01686>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.1 dated 2022-03-16 and 1.0.2 dated 2022-11-29
CHANGELOG | 13 + DESCRIPTION | 8 - MD5 | 72 ++++----- NAMESPACE | 6 R/sf-ks-prelim.R | 166 +++++++++++++-------- R/sf-ks.R | 43 ++++- R/tidy-ks-prelim.R | 330 +++++++++++++++++++------------------------ R/tidy-ks.R | 59 ++++--- build/vignette.rds |binary inst/doc/tidysf_kde.R | 25 +-- inst/doc/tidysf_kde.Rmd | 29 +-- inst/doc/tidysf_kde.html | 310 +++++++++++++++++++++------------------- man/contour.Rd | 7 man/eks-internal.Rd | 1 man/eks-package.Rd | 6 man/geom_contour_ks.Rd | 1 man/geom_point_ks.Rd | 14 + man/grevillea.Rd | 8 - man/scale_transparent.Rd | 3 man/st_add_coordinates.Rd | 5 man/tidyst_kcde.Rd | 13 - man/tidyst_kcurv.Rd | 12 - man/tidyst_kda.Rd | 19 +- man/tidyst_kdcde.Rd | 6 man/tidyst_kdde.Rd | 15 - man/tidyst_kde.Rd | 26 +-- man/tidyst_kde_balloon.Rd | 3 man/tidyst_kde_boundary.Rd | 13 + man/tidyst_kde_local_test.Rd | 17 -- man/tidyst_kdr.Rd | 14 - man/tidyst_kfs.Rd | 10 - man/tidyst_kms.Rd | 7 man/tidyst_kquiver.Rd | 15 - man/tidyst_kroc.Rd | 3 man/tidyst_ksupp.Rd | 12 - man/tidyst_plot.Rd | 15 - vignettes/tidysf_kde.Rmd | 29 +-- 37 files changed, 669 insertions(+), 666 deletions(-)
Title: Model Wrappers for Tree-Based Models
Description: Bindings for additional tree-based model engines for use with
the 'parsnip' package. Models include gradient boosted decision trees
with 'LightGBM' (Ke et al, 2017.) and
conditional inference trees and conditional random forests with
'partykit' (Hothorn and Zeileis, 2015. and
Hothorn et al, 2006. <doi:10.1198/106186006X133933>).
Author: Daniel Falbel [aut],
Athos Damiani [aut],
Roel M. Hogervorst [aut] ,
Max Kuhn [aut] ,
Simon Couch [aut, cre] ,
RStudio [cph, fnd]
Maintainer: Simon Couch <simonpatrickcouch@gmail.com>
Diff between bonsai versions 0.2.0 dated 2022-08-31 and 0.2.1 dated 2022-11-29
DESCRIPTION | 9 +-- MD5 | 16 ++--- NEWS.md | 20 ++++++ R/lightgbm.R | 70 ++++++++++++++++++++--- R/lightgbm_data.R | 2 inst/doc/bonsai.html | 111 ++++++++++++++++++-------------------- man/train_lightgbm.Rd | 4 - tests/testthat/_snaps/lightgbm.md | 34 ++++++++++- tests/testthat/test-lightgbm.R | 45 +++++++++++++-- 9 files changed, 221 insertions(+), 90 deletions(-)
Title: Haplotype-Aware CNV Analysis from scRNA-Seq
Description: A computational method that infers copy number variations (CNVs) in cancer scRNA-seq data and reconstructs the tumor phylogeny. 'numbat' integrates signals from gene expression, allelic ratio, and population haplotype structures to accurately infer allele-specific CNVs in single cells and reconstruct their lineage relationship. 'numbat' can be used to: 1. detect allele-specific copy number variations from single-cells; 2. differentiate tumor versus normal cells in the tumor microenvironment; 3. infer the clonal architecture and evolutionary history of profiled tumors. 'numbat' does not require tumor/normal-paired DNA or genotype data, but operates solely on the donor scRNA-data data (for example, 10x Cell Ranger output). Additional examples and documentations are available at <https://kharchenkolab.github.io/numbat/>. For details on the method please see Gao et al. Nature Biotechnology (2022) <doi:10.1038/s41587-022-01468-y>.
Author: Teng Gao [cre, aut],
Hirak Sarkar [aut],
Evan Biederstedt [aut],
Peter Kharchenko [aut]
Maintainer: Teng Gao <tgao@g.harvard.edu>
Diff between numbat versions 1.0.2 dated 2022-09-15 and 1.1.0 dated 2022-11-29
numbat-1.0.2/numbat/man/annot_superclones.Rd |only numbat-1.0.2/numbat/man/get_mut_tree.Rd |only numbat-1.0.2/numbat/man/l_s_v.Rd |only numbat-1.0.2/numbat/man/mut_to_tree.Rd |only numbat-1.0.2/numbat/man/nni.Rd |only numbat-1.0.2/numbat/man/nnin.Rd |only numbat-1.0.2/numbat/man/perform_nni.Rd |only numbat-1.0.2/numbat/man/score_mut.Rd |only numbat-1.0.2/numbat/man/score_mut_helper.Rd |only numbat-1.0.2/numbat/man/score_tree.Rd |only numbat-1.0.2/numbat/man/to_phylo.Rd |only numbat-1.0.2/numbat/src/phylogeny.cpp |only numbat-1.1.0/numbat/DESCRIPTION | 24 - numbat-1.1.0/numbat/MD5 | 61 +- numbat-1.1.0/numbat/NAMESPACE | 7 numbat-1.1.0/numbat/NEWS.md | 30 + numbat-1.1.0/numbat/R/RcppExports.R | 44 -- numbat-1.1.0/numbat/R/diagnostics.R |only numbat-1.1.0/numbat/R/main.R | 54 +- numbat-1.1.0/numbat/R/trees.R | 492 +----------------------- numbat-1.1.0/numbat/R/utils.R | 127 ++---- numbat-1.1.0/numbat/R/vis.R | 335 +++++++++------- numbat-1.1.0/numbat/README.md | 8 numbat-1.1.0/numbat/inst/bin/pileup_and_phase.R | 57 +- numbat-1.1.0/numbat/man/Numbat.Rd | 48 +- numbat-1.1.0/numbat/man/analyze_bulk.Rd | 2 numbat-1.1.0/numbat/man/check_allele_df.Rd | 2 numbat-1.1.0/numbat/man/check_contam.Rd |only numbat-1.1.0/numbat/man/check_exp_noise.Rd |only numbat-1.1.0/numbat/man/check_exp_ref.Rd | 2 numbat-1.1.0/numbat/man/check_matrix.Rd | 2 numbat-1.1.0/numbat/man/get_bulk.Rd | 3 numbat-1.1.0/numbat/man/get_inter_cm.Rd |only numbat-1.1.0/numbat/man/plot_bulks.Rd | 8 numbat-1.1.0/numbat/man/plot_phylo_heatmap.Rd | 26 - numbat-1.1.0/numbat/man/plot_psbulk.Rd | 5 numbat-1.1.0/numbat/src/Makevars | 2 numbat-1.1.0/numbat/src/Makevars.win | 2 numbat-1.1.0/numbat/src/RcppExports.cpp | 143 ------ numbat-1.1.0/numbat/src/misc.cpp |only 40 files changed, 493 insertions(+), 991 deletions(-)
Title: Archetypes for Targets
Description: Function-oriented Make-like declarative workflows for
Statistics and data science are supported in the 'targets' R package.
As an extension to 'targets', the 'tarchetypes' package provides
convenient user-side functions to make 'targets' easier to use.
By establishing reusable archetypes for common kinds of
targets and pipelines, these functions help express complicated
reproducible workflows concisely and compactly.
The methods in this package were influenced by the 'drake' R package
by Will Landau (2018) <doi:10.21105/joss.00550>.
Author: William Michael Landau [aut, cre]
,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between tarchetypes versions 0.7.2 dated 2022-10-31 and 0.7.3 dated 2022-11-29
DESCRIPTION | 15 +++++----- MD5 | 64 +++++++++++++++++++++++----------------------- NAMESPACE | 2 + NEWS.md | 5 +++ R/tar_map2.R | 1 R/tar_map2_count.R | 1 R/tar_map2_count_raw.R | 1 R/tar_map2_raw.R | 18 +++++++----- R/tar_map2_size.R | 1 R/tar_map2_size_raw.R | 1 R/tar_package.R | 4 ++ R/tar_quarto.R | 7 +++++ R/tar_quarto_raw.R | 1 R/tar_quarto_rep.R | 3 ++ R/tar_quarto_rep_raw.R | 12 +++++--- R/tar_render_rep.R | 2 + R/tar_render_rep_raw.R | 14 +++++++--- R/tar_rep.R | 9 +++++- R/tar_rep_raw.R | 18 +++++++----- man/tar_map2.Rd | 10 +++++++ man/tar_map2_count.Rd | 10 +++++++ man/tar_map2_count_raw.Rd | 10 +++++++ man/tar_map2_raw.Rd | 10 +++++++ man/tar_map2_size.Rd | 10 +++++++ man/tar_map2_size_raw.Rd | 10 +++++++ man/tar_quarto.Rd | 10 +++++++ man/tar_quarto_raw.Rd | 10 +++++++ man/tar_quarto_rep.Rd | 51 ++++++++++++++++++++++++++++++++++++ man/tar_quarto_rep_raw.Rd | 51 ++++++++++++++++++++++++++++++++++++ man/tar_render_rep.Rd | 41 +++++++++++++++++++++++++++++ man/tar_render_rep_raw.Rd | 41 +++++++++++++++++++++++++++++ man/tar_rep.Rd | 10 +++++++ man/tar_rep_raw.Rd | 10 +++++++ 33 files changed, 401 insertions(+), 62 deletions(-)
Title: Send Email Using R
Description: Package contains a simple SMTP client which provides a
portable solution for sending email, including attachment, from
within R.
Author: Olaf Mersmann [aut, cre] ,
Quinn Weber [ctb],
Marius Barth [ctb] ,
Are Edvardsen [ctb]
Maintainer: Olaf Mersmann <olafm@p-value.net>
Diff between sendmailR versions 1.2-1.1 dated 2022-06-09 and 1.3-1 dated 2022-11-29
sendmailR-1.2-1.1/sendmailR/tools |only sendmailR-1.3-1/sendmailR/DESCRIPTION | 33 +++++++++---- sendmailR-1.3-1/sendmailR/MD5 | 33 ++++++------- sendmailR-1.3-1/sendmailR/NAMESPACE | 6 +- sendmailR-1.3-1/sendmailR/R/mime_part.R | 41 +++++++++++----- sendmailR-1.3-1/sendmailR/R/options.R | 18 +++---- sendmailR-1.3-1/sendmailR/R/sendmailR.r | 44 ++++++++++++------ sendmailR-1.3-1/sendmailR/README.md |only sendmailR-1.3-1/sendmailR/man/mime_part.Rd | 4 - sendmailR-1.3-1/sendmailR/man/mime_part.character.Rd | 4 - sendmailR-1.3-1/sendmailR/man/mime_part.data.frame.Rd | 9 ++- sendmailR-1.3-1/sendmailR/man/mime_part.default.Rd | 4 - sendmailR-1.3-1/sendmailR/man/mime_part.ggplot.Rd | 7 +- sendmailR-1.3-1/sendmailR/man/mime_part.matrix.Rd | 4 - sendmailR-1.3-1/sendmailR/man/mime_part.trellis.Rd | 7 +- sendmailR-1.3-1/sendmailR/man/sendmail.Rd | 24 ++++++--- sendmailR-1.3-1/sendmailR/man/sendmail_options.Rd | 6 +- sendmailR-1.3-1/sendmailR/tests/multiple_recipients.R | 8 ++- 18 files changed, 156 insertions(+), 96 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Workflows
Description: As a pipeline toolkit for Statistics and data science in R,
the 'targets' package brings together function-oriented programming and
'Make'-like declarative workflows.
It analyzes the dependency relationships among the tasks of a workflow,
skips steps that are already up to date, runs the necessary
computation with optional parallel workers, abstracts files as
R objects, and provides tangible evidence that the results match
the underlying code and data. The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.14.0 dated 2022-11-01 and 0.14.1 dated 2022-11-29
DESCRIPTION | 8 +++--- MD5 | 44 ++++++++++++++++++++-------------- NEWS.md | 8 ++++++ R/class_build.R | 33 +++++++++++++++++++------- R/class_builder.R | 10 +++---- R/class_mermaid.R | 4 +-- R/tar_debug_instructions.R | 15 +++++++---- R/tar_destroy.R | 48 +++++++++++++++++++++++++++----------- R/tar_engine_knitr.R | 20 +++++++++++++++ R/tar_make.R | 4 ++- R/tar_meta.R | 2 + R/tar_watch.R | 2 - man/tar_destroy.Rd | 44 +++++++++++++++++++++++++--------- man/tar_make.Rd | 4 ++- man/tar_meta.Rd | 2 + man/tar_watch.Rd | 8 ++++-- tests/interactive/_targets |only tests/interactive/_targets.R |only tests/interactive/test-debug.R | 25 +++++++++++++++++++ tests/testthat/test-class_build.R | 13 ++++++++++ tests/testthat/test-tar_destroy.R | 8 ++++++ 21 files changed, 227 insertions(+), 75 deletions(-)
Title: Blind Source Separation for Multivariate Spatio-Temporal Data
Description: Simultaneous/joint diagonalization of local autocovariance matrices to estimate spatio-temporally uncorrelated random fields.
Author: Christoph Muehlmann [aut, cre]
,
Nikolaus Piccolotto [aut] ,
Claudia Cappello [aut] ,
Sandra De Iaco [aut] ,
Klaus Nordhausen [aut]
Maintainer: Christoph Muehlmann <christoph.muehlmann@tuwien.ac.at>
Diff between SpaceTimeBSS versions 0.1-0 dated 2022-08-13 and 0.2-0 dated 2022-11-29
DESCRIPTION | 14 ++++++++++---- MD5 | 9 ++++++--- data |only inst/ChangeLog.txt | 4 ++++ man/SpaceTimeBSS-package.Rd | 8 +++++--- man/meteo_veneto.Rd |only 6 files changed, 25 insertions(+), 10 deletions(-)
Title: Partial Least Squares Regression for Cox Models and Related
Techniques
Description: Provides Partial least squares Regression and various regular, sparse or kernel, techniques for fitting Cox models in high dimensional settings <doi:10.1093/bioinformatics/btu660>, Bastien, P., Bertrand, F., Meyer N., Maumy-Bertrand, M. (2015), Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data, Bioinformatics, 31(3):397-404. Cross validation criteria were studied in <arXiv:1810.02962>, Bertrand, F., Bastien, Ph. and Maumy-Bertrand, M. (2018), Cross validating extensions of kernel, sparse or regular partial least squares regression models to censored data.
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between plsRcox versions 1.7.6 dated 2021-03-19 and 1.7.7 dated 2022-11-29
DESCRIPTION | 16 MD5 | 150 +++--- R/DKplsRcox.R | 7 R/DKplsRcoxmodel.formula.R | 8 R/DR_coxph.R | 2 R/coxDKpls2DR.R | 7 R/coxDKpls2DR.formula.R | 8 R/coxDKplsDR.R | 7 R/coxDKplsDR.formula.R | 8 R/coxDKsplsDR.R | 7 R/coxDKsplsDR.formula.R | 8 R/coxpls.R | 7 R/coxpls.formula.R | 8 R/coxpls2.R | 7 R/coxpls2.formula.R | 8 R/coxpls2DR.R | 7 R/coxpls2DR.formula.R | 8 R/coxpls3.R | 7 R/coxpls3.formula.R | 8 R/coxpls3DR.R | 7 R/coxpls3DR.formula.R | 8 R/coxplsDR.R | 7 R/coxplsDR.formula.R | 8 R/coxsplsDR.R | 7 R/coxsplsDR.formula.R | 8 R/cv.autoplsRcox.R | 2 R/cv.coxDKplsDR.R | 2 R/cv.coxDKsplsDR.R | 2 R/cv.coxpls.R | 2 R/cv.coxplsDR.R | 2 R/cv.coxsplsDR.R | 2 R/cv.larsDR.R | 2 R/cv.plsRcox.R | 2 R/internal-plsRcox.R | 2 R/larsDR_coxph.R | 7 R/larsDR_coxph.formula.R | 8 R/plsRcox.R | 7 R/plsRcoxmodel.formula.R | 8 R/predict.plsRcoxmodel.R | 2 R/print.plsRcoxmodel.R | 2 R/print.summary.plsRcoxmodel.R | 2 R/summary.plsRcoxmodel.R | 2 README.md | 632 ++++++---------------------- man/DKplsRcox.Rd | 11 man/DR_coxph.Rd | 2 man/coxDKpls2DR.Rd | 11 man/coxDKplsDR.Rd | 11 man/coxDKsplsDR.Rd | 11 man/coxpls.Rd | 11 man/coxpls2.Rd | 11 man/coxpls2DR.Rd | 11 man/coxpls3.Rd | 11 man/coxpls3DR.Rd | 11 man/coxplsDR.Rd | 11 man/coxsplsDR.Rd | 11 man/cv.autoplsRcox.Rd | 2 man/cv.coxDKplsDR.Rd | 2 man/cv.coxDKsplsDR.Rd | 2 man/cv.coxpls.Rd | 2 man/cv.coxplsDR.Rd | 2 man/cv.coxsplsDR.Rd | 2 man/cv.larsDR.Rd | 2 man/cv.plsRcox.Rd | 2 man/figures/README-cvcoxDKsplsDR-1.png |binary man/figures/README-cvcoxsplsDR-1.png |binary man/figures/README-cvplsRcox-1.png |binary man/figures/README-devianceresiduals-1.png |binary man/figures/README-devianceresiduals2-1.png |binary man/figures/README-devianceresiduals3-1.png |binary man/internal-plsRcox.Rd | 2 man/larsDR_coxph.Rd | 11 man/plsRcox.Rd | 11 man/predict.plsRcoxmodel.Rd | 2 man/print.plsRcoxmodel.Rd | 2 man/print.summary.plsRcoxmodel.Rd | 2 man/summary.plsRcoxmodel.Rd | 2 76 files changed, 533 insertions(+), 659 deletions(-)
Title: Contextual Importance and Utility
Description: Implementation of the Contextual Importance and Utility
(CIU) concepts for Explainable AI (XAI). A recent description of CIU
can be found in e.g. Främling (2020) <arXiv:2009.13996>.
Author: Kary Fraemling
Maintainer: Kary Fraemling <Kary.Framling@umu.se>
Diff between ciu versions 0.5.0 dated 2021-06-30 and 0.6.0 dated 2022-11-29
ciu-0.5.0/ciu/man/barplot.ciu.Rd |only ciu-0.5.0/ciu/man/explain.Rd |only ciu-0.5.0/ciu/man/ggplot.col.ciu.Rd |only ciu-0.5.0/ciu/man/pie.ciu.Rd |only ciu-0.5.0/ciu/man/plot.ciu.3D.Rd |only ciu-0.5.0/ciu/man/plot.ciu.Rd |only ciu-0.6.0/ciu/DESCRIPTION | 8 - ciu-0.6.0/ciu/MD5 | 44 ++--- ciu-0.6.0/ciu/NAMESPACE | 1 ciu-0.6.0/ciu/NEWS.md |only ciu-0.6.0/ciu/R/ContextualImportanceUtility.R | 199 ++++++++++++++++++++++---- ciu-0.6.0/ciu/R/MetaExplain.R | 12 + ciu-0.6.0/ciu/R/TextualCIU.R | 2 ciu-0.6.0/ciu/R/ciu.R | 34 +++- ciu-0.6.0/ciu/R/ciu.ggplot.col.R | 61 +++++-- ciu-0.6.0/ciu/R/ciu.result.R | 2 ciu-0.6.0/ciu/man/ciu-package.Rd | 4 ciu-0.6.0/ciu/man/ciu.barplot.Rd | 9 - ciu-0.6.0/ciu/man/ciu.ggplot.Rd |only ciu-0.6.0/ciu/man/ciu.ggplot.col.Rd | 15 + ciu-0.6.0/ciu/man/ciu.list.to.frame.Rd | 10 + ciu-0.6.0/ciu/man/ciu.meta.explain.Rd | 3 ciu-0.6.0/ciu/man/ciu.new.Rd | 15 + ciu-0.6.0/ciu/man/ciu.pie.Rd | 2 ciu-0.6.0/ciu/man/ciu.plot.3D.Rd | 20 -- ciu-0.6.0/ciu/man/ciu.result.new.Rd | 2 ciu-0.6.0/ciu/man/ciu.textual.Rd | 2 27 files changed, 329 insertions(+), 116 deletions(-)
Title: Multilevel B-Spline Approximation
Description: Functions to interpolate irregularly and regularly spaced data using Multilevel B-spline Approximation (MBA). Functions call portions of the SINTEF Multilevel B-spline Library written by Øyvind Hjelle which implements methods developed by Lee, Wolberg and Shin (1997; <doi:10.1109/2945.620490>).
Author: Andrew Finley [aut, cre],
Sudipto Banerjee [aut],
Oyvind Hjelle [aut],
Roger Bivand [ctb]
Maintainer: Andrew Finley <finleya@msu.edu>
Diff between MBA versions 0.0-9 dated 2017-03-08 and 0.1-0 dated 2022-11-29
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- man/mba.points.Rd | 2 +- man/mba.surf.Rd | 2 +- src/include/GenMatrix.h | 2 +- src/include/MBA.h | 2 +- src/include/MBAdata.h | 2 +- src/include/UCBsplineSurface.h | 2 +- 8 files changed, 17 insertions(+), 17 deletions(-)
Title: Estimation of Recombination Rate and Maternal LD in Half-Sibs
Description: Paternal recombination rate and maternal linkage disequilibrium
(LD) are estimated for pairs of biallelic markers such as single nucleotide
polymorphisms (SNPs) from progeny genotypes and sire haplotypes. The
implementation relies on paternal half-sib families. If maternal half-sib
families are used, the roles of sire/dam are swapped. Multiple families can
be considered. For parameter estimation, at least one sire has to be double
heterozygous at the investigated pairs of SNPs.
Based on recombination rates, genetic distances between markers can be
estimated. Markers with unusually large recombination rate to markers in
close proximity (i.e. putatively misplaced markers) shall be discarded in
this derivation.
A workflow description is attached as vignette.
*A pipeline is available at GitHub*
<https://github.com/wittenburg/hsrecombi>
Hampel, Teuscher, Gomez-Raya, Doschoris, Wittenburg (2018) "Estimation of
recombination rate and maternal linkage disequilibrium in half-sibs"
<doi [...truncated...]
Author: Doerte Wittenburg [aut, cre]
Maintainer: Doerte Wittenburg <wittenburg@fbn-dummerstorf.de>
Diff between hsrecombi versions 0.4.2 dated 2022-03-27 and 0.5.0 dated 2022-11-29
DESCRIPTION | 13 MD5 | 32 + NAMESPACE | 6 NEWS.md | 6 R/functions.R | 139 ++++++++ R/hsrecombi.R | 54 ++- build/partial.rdb |binary inst/doc/hsrecombi_workflow.html | 628 ++++++++++++++++++++++----------------- man/bestmapfun.Rd | 4 man/checkCandidates.Rd | 4 man/felsenstein.Rd |only man/geneticPosition.Rd | 2 man/haldane.Rd |only man/hsrecombi.Rd | 2 man/karlin.Rd |only man/kosambi.Rd |only man/makehap.Rd | 4 man/makehappm.Rd | 7 man/rao.Rd | 2 19 files changed, 577 insertions(+), 326 deletions(-)
Title: Treatment Allocation in Clinical Trials by the Maximal Procedure
Description: Performs treatment allocation in two-arm clinical trials by the maximal procedure described by Berger et al. (2003) <doi:10.1002/sim.1538>. To that end, the algorithm provided by Salama et al. (2008) <doi:10.1002/sim.3014> is implemented.
Author: Ignacio Lopez-de-Ullibarri [aut, cre]
Maintainer: Ignacio Lopez-de-Ullibarri <ignacio.lopezdeullibarri@udc.es>
Diff between MPBoost versions 0.1-4 dated 2021-10-06 and 0.1-5 dated 2022-11-29
ChangeLog | 6 ++++++ DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/mpboost.pdf |binary src/mpboost.cpp | 2 +- 8 files changed, 21 insertions(+), 15 deletions(-)
Title: Read and write PNG images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between png versions 0.1-7 dated 2013-12-03 and 0.1-8 dated 2022-11-29
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS | 5 +++++ man/writePNG.Rd | 4 ++-- src/Makevars.win | 16 ++++++++-------- src/dummy.c |only src/read.c | 5 ++++- src/write.c | 4 +++- 8 files changed, 32 insertions(+), 21 deletions(-)
Title: Read and write JPEG images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between jpeg versions 0.1-9 dated 2021-07-24 and 0.1-10 dated 2022-11-29
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS | 5 +++++ src/read.c | 4 ++-- src/rjcommon.h | 2 +- 5 files changed, 17 insertions(+), 11 deletions(-)
Title: Spatially Explicit Capture-Recapture
Description: Functions to estimate the density and size of a spatially
distributed animal population sampled with an array of passive detectors,
such as traps, or by searching polygons or transects. Models incorporating
distance-dependent detection are fitted by maximizing the likelihood.
Tools are included for data manipulation and model selection.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between secr versions 4.5.7 dated 2022-10-08 and 4.5.8 dated 2022-11-29
DESCRIPTION | 8 - MD5 | 99 ++++++++++---------- NAMESPACE | 9 + NEWS | 23 ++++ R/Dsurface.R | 8 - R/Enk.R |only R/RcppExports.R | 8 + R/chatnk.R |only R/esa.plot.R |only R/fastsecrloglik.R | 15 ++- R/generalsecrloglik.R | 17 ++- R/homerange.R | 16 +++ R/make.mask.R | 5 - R/methods.R | 69 -------------- R/pdot.R | 203 ------------------------------------------ R/plot.traps.R | 54 ++++++----- R/preparedata.R | 1 R/randomHabitat.R | 42 ++++---- R/read.mask.R |only R/secr.test.R | 2 R/sim.popn.R | 15 ++- R/sim.secr.R | 70 +++++++------- R/summary.capthist.R | 26 ++++- R/summary.secr.R | 4 R/supplement.grid.R |only R/trap.builder.R | 40 ++++---- R/utility.R | 13 ++ inst/doc/secr-datainput.pdf |binary inst/doc/secr-overview.Rmd | 4 inst/doc/secr-overview.pdf |binary man/chat.Rd |only man/circular.Rd | 6 - man/clone.Rd | 3 man/cluster.Rd | 6 - man/homerange.Rd | 8 + man/ip.secr-deprecated.Rd | 40 +------- man/make.lacework.Rd | 2 man/ovenbird.Rd | 33 +----- man/pdot.Rd | 4 man/plot.traps.Rd | 5 - man/predict.secr.Rd | 12 ++ man/randomHabitat.Rd | 9 + man/secr-package.Rd | 4 man/sim.popn.Rd | 16 ++- man/summary.capthist.Rd | 15 +-- src/RcppExports.cpp | 54 ++++++++--- src/autils.cpp | 19 +++ src/makegk.cpp | 3 src/pdot.cpp | 137 ++++++++++++++++++++++++++++ src/secr.h | 1 src/simsecr.cpp | 41 ++++---- tests/testthat/test-derived.R |only tests/testthat/test-initial.R | 47 ++++++++- vignettes/secr-overview.Rmd | 4 54 files changed, 642 insertions(+), 578 deletions(-)
Title: Tools for Imaging Flow Cytometry
Description: Contains several tools to treat imaging flow cytometry data from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®', part of 'Luminex®'). Provides an easy and simple way to read and write .fcs, .rif, .cif and .daf files. Information such as masks, features, regions and populations set within these files can be retrieved for each single cell. In addition, raw data such as images stored can also be accessed. Users, may hopefully increase their productivity thanks to dedicated functions to extract, visualize, manipulate and export 'IFC' data. Toy data example can be installed through the 'IFCdata' package of approximately 32 MB, which is available in a 'drat' repository <https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS' and file 'AUTHORS' for a list of copyright holders and authors.
Author: Yohann Demont [aut, cre],
Gautier Stoll [ctb],
Guido Kroemer [ldr],
Jean-Pierre Marolleau [ldr],
Loïc Garcon [ldr]
Maintainer: Yohann Demont <git.demont@gmail.com>
Diff between IFC versions 0.1.7 dated 2022-10-05 and 0.1.8 dated 2022-11-29
IFC-0.1.7/IFC/inst/include/cbind.hpp |only IFC-0.1.7/IFC/man/cpp_fast_cbind_DF_DF.Rd |only IFC-0.1.7/IFC/man/cpp_fast_cbind_DF_L.Rd |only IFC-0.1.7/IFC/man/cpp_fast_cbind_DF_M.Rd |only IFC-0.1.7/IFC/man/cpp_fast_cbind_L_DF.Rd |only IFC-0.1.7/IFC/man/cpp_fast_cbind_M_DF.Rd |only IFC-0.1.7/IFC/man/cpp_fast_cbind_M_M.Rd |only IFC-0.1.8/IFC/DESCRIPTION | 14 IFC-0.1.8/IFC/MD5 | 217 +++---- IFC-0.1.8/IFC/NAMESPACE | 6 IFC-0.1.8/IFC/R/DisplayGallery.R | 12 IFC-0.1.8/IFC/R/ExportToGallery.R | 12 IFC-0.1.8/IFC/R/ExportToNumpy.R | 4 IFC-0.1.8/IFC/R/ExportToReport.R | 66 +- IFC-0.1.8/IFC/R/ExtractFromDAF.R | 29 IFC-0.1.8/IFC/R/ExtractFromXIF.R | 6 IFC-0.1.8/IFC/R/ExtractImages_toBase64.R | 2 IFC-0.1.8/IFC/R/ExtractImages_toFile.R | 2 IFC-0.1.8/IFC/R/ExtractImages_toMatrix.R | 2 IFC-0.1.8/IFC/R/ExtractMasks_toMatrix.R | 4 IFC-0.1.8/IFC/R/GatingML.R | 31 - IFC-0.1.8/IFC/R/RcppExports.R | 175 ++--- IFC-0.1.8/IFC/R/XIFtoTIFF.R | 57 - IFC-0.1.8/IFC/R/addText.R | 2 IFC-0.1.8/IFC/R/applyGatingStrategy.R | 25 IFC-0.1.8/IFC/R/autoplot.R | 6 IFC-0.1.8/IFC/R/buildBatch.R | 4 IFC-0.1.8/IFC/R/buildGraph.R | 10 IFC-0.1.8/IFC/R/buildPopulation.R | 17 IFC-0.1.8/IFC/R/buildRegion.R | 13 IFC-0.1.8/IFC/R/checksumDAF.R | 2 IFC-0.1.8/IFC/R/data_add_pop_sample.R | 20 IFC-0.1.8/IFC/R/data_add_pops.R | 7 IFC-0.1.8/IFC/R/data_modify_pops.R |only IFC-0.1.8/IFC/R/data_modify_regions.R |only IFC-0.1.8/IFC/R/data_to_DAF.R | 177 ----- IFC-0.1.8/IFC/R/fastCbind.R | 10 IFC-0.1.8/IFC/R/fcs.R | 24 IFC-0.1.8/IFC/R/getFeaturesValues.R | 9 IFC-0.1.8/IFC/R/getIFD.R | 4 IFC-0.1.8/IFC/R/getImagesValues.R | 2 IFC-0.1.8/IFC/R/getOffsets.R | 12 IFC-0.1.8/IFC/R/graphs_utils.R | 278 +++++---- IFC-0.1.8/IFC/R/mergeXIF.R | 19 IFC-0.1.8/IFC/R/objectCleanse.R | 12 IFC-0.1.8/IFC/R/objectExtract.R | 11 IFC-0.1.8/IFC/R/objectParam.R | 9 IFC-0.1.8/IFC/R/objectResize.R | 12 IFC-0.1.8/IFC/R/objectTransform.R | 177 ++--- IFC-0.1.8/IFC/R/plotGraph.R | 34 - IFC-0.1.8/IFC/R/popsCompute.R | 10 IFC-0.1.8/IFC/R/popsGetAffiliation.R | 19 IFC-0.1.8/IFC/R/popsNetwork.R | 232 +++---- IFC-0.1.8/IFC/R/popsRename.R | 188 +++--- IFC-0.1.8/IFC/R/popsWithin.R | 11 IFC-0.1.8/IFC/R/progress_utils.R | 39 - IFC-0.1.8/IFC/R/readGatingStrategy.R | 2 IFC-0.1.8/IFC/R/redefine_utils.R | 6 IFC-0.1.8/IFC/R/seed.R |only IFC-0.1.8/IFC/R/stats.R | 124 ++-- IFC-0.1.8/IFC/R/strings_utils.R | 64 -- IFC-0.1.8/IFC/R/subsetXIF.R | 33 - IFC-0.1.8/IFC/R/tiff_utils.R | 123 +--- IFC-0.1.8/IFC/R/toBIN_features.R | 26 IFC-0.1.8/IFC/R/toBIN_images.R | 172 ++--- IFC-0.1.8/IFC/R/toXML2_pops.R | 2 IFC-0.1.8/IFC/R/writeGatingStrategy.R | 7 IFC-0.1.8/IFC/build/partial.rdb |binary IFC-0.1.8/IFC/inst/CITATION | 2 IFC-0.1.8/IFC/inst/include/align.hpp | 6 IFC-0.1.8/IFC/inst/include/assert.hpp | 2 IFC-0.1.8/IFC/inst/include/color.hpp | 2 IFC-0.1.8/IFC/inst/include/decomp.hpp | 54 - IFC-0.1.8/IFC/inst/include/extract.hpp | 10 IFC-0.1.8/IFC/inst/include/gate.hpp | 4 IFC-0.1.8/IFC/inst/include/group.hpp | 4 IFC-0.1.8/IFC/inst/include/matrix_logic.hpp | 6 IFC-0.1.8/IFC/inst/include/plot.hpp | 42 - IFC-0.1.8/IFC/inst/include/resize.hpp | 2 IFC-0.1.8/IFC/inst/include/scan.hpp | 12 IFC-0.1.8/IFC/inst/include/tiff.hpp | 850 +++++++++++----------------- IFC-0.1.8/IFC/inst/include/trans.hpp | 69 +- IFC-0.1.8/IFC/inst/include/utils.hpp | 77 ++ IFC-0.1.8/IFC/man/BatchReport.Rd | 8 IFC-0.1.8/IFC/man/BatchStatsReport.Rd | 4 IFC-0.1.8/IFC/man/CreateGraphReport.Rd | 8 IFC-0.1.8/IFC/man/ExportToReport.Rd | 8 IFC-0.1.8/IFC/man/cpp_checksum.Rd | 3 IFC-0.1.8/IFC/man/cpp_decomp.Rd | 2 IFC-0.1.8/IFC/man/cpp_fastTAGS.Rd | 4 IFC-0.1.8/IFC/man/cpp_getBits.Rd |only IFC-0.1.8/IFC/man/cpp_getTAGS.Rd | 4 IFC-0.1.8/IFC/man/cpp_getoffsets_noid.Rd | 4 IFC-0.1.8/IFC/man/cpp_getoffsets_wid.Rd | 4 IFC-0.1.8/IFC/man/cpp_mpfmatch.Rd |only IFC-0.1.8/IFC/man/cpp_offset_to_raw.Rd |only IFC-0.1.8/IFC/man/cpp_raw_to_offset.Rd |only IFC-0.1.8/IFC/man/cpp_rawdecomp.Rd | 2 IFC-0.1.8/IFC/man/cpp_transform.Rd | 2 IFC-0.1.8/IFC/man/data_add_pop_sample.Rd | 5 IFC-0.1.8/IFC/man/data_modify_pops.Rd |only IFC-0.1.8/IFC/man/data_modify_regions.Rd |only IFC-0.1.8/IFC/man/fetch_seed.Rd |only IFC-0.1.8/IFC/man/gen_altnames.Rd | 12 IFC-0.1.8/IFC/man/getIFD.Rd | 2 IFC-0.1.8/IFC/man/newPB.Rd | 14 IFC-0.1.8/IFC/man/objectCleanse.Rd | 3 IFC-0.1.8/IFC/man/objectParam.Rd | 3 IFC-0.1.8/IFC/man/objectResize.Rd | 3 IFC-0.1.8/IFC/man/objectTransform.Rd | 3 IFC-0.1.8/IFC/man/plotGraph.Rd | 9 IFC-0.1.8/IFC/man/pseudo_seed.Rd |only IFC-0.1.8/IFC/man/toBIN_features.Rd | 6 IFC-0.1.8/IFC/man/toBIN_images.Rd | 6 IFC-0.1.8/IFC/man/toXML2_boolpop_gs.Rd | 4 IFC-0.1.8/IFC/man/with_seed.Rd |only IFC-0.1.8/IFC/man/writeIFD.Rd | 1 IFC-0.1.8/IFC/src/RcppExports.cpp | 213 ++----- IFC-0.1.8/IFC/src/ifc.cpp | 295 ++++----- 119 files changed, 2112 insertions(+), 2255 deletions(-)
Title: Test Data for the 'admiral' Package
Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clinical
Data Interchange Standards Consortium (CDISC) pilot project used for testing
and developing Analysis Data Model (ADaM) derivations inside the 'admiral'
package.
Author: Thomas Neitmann [aut, cre],
Stefan Bundfuss [aut],
Ross Farrugia [ctb],
Gopi Vegesna [ctb],
Sophie Shapcott [ctb],
Mahdi About [ctb],
Antonio Rodriguez [ctb],
Claudia Carlucci [ctb],
Annie Yang [ctb],
Tamara Senior [ctb],
F. Hoffmann-La Roche AG [cph [...truncated...]
Maintainer: Thomas Neitmann <thomas.neitmann@roche.com>
Diff between admiral.test versions 0.3.0 dated 2022-09-01 and 0.4.0 dated 2022-11-29
admiral.test-0.3.0/admiral.test/data/datalist |only admiral.test-0.3.0/admiral.test/man/get_sdg_terms.Rd |only admiral.test-0.3.0/admiral.test/man/get_smq_terms.Rd |only admiral.test-0.4.0/admiral.test/DESCRIPTION | 13 - admiral.test-0.4.0/admiral.test/MD5 | 55 ++--- admiral.test-0.4.0/admiral.test/NEWS.md | 6 admiral.test-0.4.0/admiral.test/R/data.R | 32 +-- admiral.test-0.4.0/admiral.test/R/get_terms.R | 121 +++++------- admiral.test-0.4.0/admiral.test/README.md | 18 - admiral.test-0.4.0/admiral.test/data/admiral_pc.rda |binary admiral.test-0.4.0/admiral.test/data/admiral_pp.rda |binary admiral.test-0.4.0/admiral.test/inst |only admiral.test-0.4.0/admiral.test/man/admiral.test-package.Rd | 6 admiral.test-0.4.0/admiral.test/man/admiral_ae.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_cm.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_dm.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_ex.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_mh.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_pp.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_qs.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_suppae.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_suppdm.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_suppds.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_sv.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_ts.Rd | 2 admiral.test-0.4.0/admiral.test/man/admiral_vs.Rd | 2 admiral.test-0.4.0/admiral.test/man/get_terms.Rd |only admiral.test-0.4.0/admiral.test/man/raw_ds.Rd | 2 admiral.test-0.4.0/admiral.test/man/raw_lb.Rd | 2 admiral.test-0.4.0/admiral.test/man/raw_mh.Rd | 2 admiral.test-0.4.0/admiral.test/man/raw_suppds.Rd | 2 31 files changed, 145 insertions(+), 140 deletions(-)
Title: Raw Data Quality Control Tool for LC-MS System
Description: Assess LC–MS system performance by visualizing instrument log files and monitoring raw quality control samples within a project.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>
Diff between RawHummus versions 0.2.2 dated 2022-09-29 and 0.2.3 dated 2022-11-29
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 3 ++- R/runGui.R | 3 ++- inst/shiny/Gui/rsconnect/shinyapps.io/bcdd |only 5 files changed, 12 insertions(+), 9 deletions(-)
Title: Prediction of G Quadruplexes and Other Non-B DNA Motifs
Description: Genomic biology is not limited to the confines of the canonical B-forming DNA duplex, but includes over ten different types of other secondary structures that are collectively termed non-B DNA structures. Of these non-B DNA structures, the G-quadruplexes are highly stable four-stranded structures that are recognized by distinct subsets of nuclear factors. This package provide functions for predicting intramolecular G quadruplexes. In addition, functions for predicting other intramolecular nonB DNA structures are included.
Author: Hannah O. Ajoge
Maintainer: Hannah O. Ajoge <ohuajo@gmail.com>
Diff between gquad versions 2.1-1 dated 2017-06-06 and 2.1-2 dated 2022-11-29
DESCRIPTION | 25 ++++++++++--------------- MD5 | 43 ++++++++++++++++++++++++------------------- R/aphased.R | 2 +- R/gquad.R | 2 +- R/gquadO.R | 2 +- R/hdna.R | 2 +- R/hdnaO.R | 2 +- R/slipped.R | 2 +- R/str.R | 2 +- R/tfo.R | 2 +- R/zdna.R | 2 +- build |only inst |only man/aphased.Rd | 2 +- man/gquad.Rd | 2 +- man/gquadO.Rd | 2 +- man/hdna.Rd | 2 +- man/hdnaO.Rd | 2 +- man/slipped.Rd | 2 +- man/str.Rd | 2 +- man/tfo.Rd | 2 +- man/zdna.Rd | 2 +- vignettes |only 23 files changed, 52 insertions(+), 52 deletions(-)
Title: Swarm Intelligence for Self-Organized Clustering
Description: Algorithms implementing populations of agents that interact with one another and sense their environment may exhibit emergent behavior such as self-organization and swarm intelligence. Here, a swarm system called Databionic swarm (DBS) is introduced which was published in Thrun, M.C., Ultsch A.: "Swarm Intelligence for Self-Organized Clustering" (2020), Artificial Intelligence, <DOI:10.1016/j.artint.2020.103237>. DBS is able to adapt itself to structures of high-dimensional data such as natural clusters characterized by distance and/or density based structures in the data space. The first module is the parameter-free projection method called Pswarm (Pswarm()), which exploits the concepts of self-organization and emergence, game theory, swarm intelligence and symmetry considerations. The second module is the parameter-free high-dimensional data visualization technique, which generates projected points on the topographic map with hypsometric tints defined by the generalized U-matri [...truncated...]
Author: Michael Thrun [aut, cre, cph]
Maintainer: Michael Thrun <m.thrun@gmx.net>
Diff between DatabionicSwarm versions 1.1.5 dated 2021-01-12 and 1.1.6 dated 2022-11-29
DESCRIPTION | 14 MD5 | 82 NAMESPACE | 2 R/DBSclustering.R | 5 R/Delaunay4Points.R | 130 R/Pswarm.R | 61 R/ShortestGraphPathsC.R | 22 R/UniquePoints.R |only R/setGridSize.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS | 17 inst/doc/DatabionicSwarm.Rmd | 6 inst/doc/DatabionicSwarm.html |12951 +++++++++++++++++++----------- man/ClusteringAccuracy.Rd | 33 man/DBSclustering.Rd | 93 man/Delaunay4Points.Rd | 36 man/DelaunayClassificationError.Rd | 81 man/Delta3DWeightsC.Rd | 4 man/DijkstraSSSP.Rd | 22 man/GeneratePswarmVisualization.Rd | 111 man/ProjectedPoints2Grid.Rd | 11 man/Pswarm.Rd | 86 man/PswarmCurrentRadiusC2botsPositive.Rd | 44 man/RelativeDifference.Rd | 32 man/RobustNorm_BackTrafo.Rd | 5 man/RobustNormalization.Rd | 72 man/ShortestGraphPathsC.Rd | 36 man/UniquePoints.Rd |only man/findPossiblePositionsCsingle.Rd | 22 man/getCartesianCoordinates.Rd | 29 man/getUmatrix4Projection.Rd | 57 man/plotSwarm.rd | 22 man/rDistanceToroidCsingle.Rd | 22 man/sESOM4BMUs.Rd | 23 man/setGridSize.Rd | 26 man/setPolarGrid.Rd | 31 man/setRmin.Rd | 17 man/setdiffMatrix.Rd | 13 man/trainstepC.Rd | 21 src/PswarmCurrentRadiusC2botsPositive.cpp | 41 src/RcppExports.cpp | 5 vignettes/DatabionicSwarm.Rmd | 6 43 files changed, 9042 insertions(+), 5251 deletions(-)
More information about DatabionicSwarm at CRAN
Permanent link
Title: Client for Rserve
Description: Client for Rserve, allowing to connect to Rserve instances and issue commands.
Author: Simon Urbanek <Simon.Urbanek@r-project.org>
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between RSclient versions 0.7-8 dated 2022-03-09 and 0.7-9 dated 2022-11-29
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 4 ++++ src/cli.c | 53 ++++++++++++++++++++++++++++++++++++----------------- src/dummy.c | 6 +++--- 5 files changed, 50 insertions(+), 27 deletions(-)
Title: R Wrapper for the 'OneMap.Sg API'
Description: An R wrapper for the 'OneMap.Sg' API <https://www.onemap.gov.sg/docs/>.
Functions help users query data from the API and return raw JSON data
in "tidy" formats. Support is also available for users to retrieve data from multiple API calls
and integrate results into single dataframes, without
needing to clean and merge the data themselves. This package is best suited for users who would
like to perform analyses with Singapore's spatial data without having to perform excessive data cleaning.
Author: Jolene Lim [aut, cre]
Maintainer: Jolene Lim <jyl2187@columbia.edu>
Diff between onemapsgapi versions 1.0.0 dated 2020-02-06 and 1.1.0 dated 2022-11-29
DESCRIPTION | 13 LICENSE | 4 MD5 | 70 +- NAMESPACE | 110 ++- R/get_planning_areas.R | 189 +++--- R/get_planning_names.R | 116 ++-- R/get_planning_polygon.R | 169 +++--- R/get_pop_queries.R | 164 ++--- R/get_pop_query.R | 210 ++++--- R/get_route.R | 336 ++++++------ R/get_summ_route.R | 194 +++---- R/get_theme.R | 205 +++---- R/get_theme_info.R | 114 ++-- R/get_theme_status.R | 132 ++-- R/get_token.R | 100 +-- R/get_travel.R | 264 +++++---- R/import_functions.R | 20 R/search_themes.R | 140 ++--- build/vignette.rds |binary inst/doc/onemapsgapi_vignette.R | 20 inst/doc/onemapsgapi_vignette.Rmd | 709 +++++++++++++------------ inst/doc/onemapsgapi_vignette.html | 1023 +++++++++++++++++++++++++------------ man/get_planning_areas.Rd | 7 man/get_planning_names.Rd | 4 man/get_planning_polygon.Rd | 16 man/get_pop_queries.Rd | 2 man/get_pop_query.Rd | 19 man/get_route.Rd | 15 man/get_summ_route.Rd | 7 man/get_theme.Rd | 15 man/get_theme_info.Rd | 2 man/get_theme_status.Rd | 4 man/get_token.Rd | 4 man/get_travel.Rd | 15 man/search_themes.Rd | 2 vignettes/onemapsgapi_vignette.Rmd | 709 +++++++++++++------------ 36 files changed, 2838 insertions(+), 2285 deletions(-)
Title: Kernel Local Polynomial Regression
Description: Computes local polynomial estimators for
the regression and also density. It comprises several
different utilities to handle kernel estimators.
Author: Jorge Luis Ojeda Cabrera [aut, cre],
Bastiaan Quast [ctb]
Maintainer: Jorge Luis Ojeda Cabrera <jojeda@unizar.es>
Diff between locpol versions 0.7-0 dated 2018-05-24 and 0.8.0 dated 2022-11-29
DESCRIPTION | 16 ++- MD5 | 30 +++---- man/KernelChars.Rd | 12 +- man/Kernels.Rd | 9 -- man/PRDenEstC.Rd | 14 +-- man/compKernVals.Rd | 12 +- man/denCVBwSelC.Rd | 20 ++-- man/equivKernel.Rd | 14 +-- man/kernelCtes.Rd | 6 - man/locPolWeights.Rd | 26 +++--- man/locpol.Rd | 30 +++---- man/locpolSmoothers.Rd | 36 ++++---- man/pluginBw.Rd | 8 - man/regCVBwSelC.Rd | 10 +- man/thumbBw.Rd | 18 ++-- src/locpol.c | 206 ++++++++++++++++++++++++------------------------- 16 files changed, 235 insertions(+), 232 deletions(-)
Title: Extract and Tidy Canadian 'Hydrometric' Data
Description: Provides functions to access historical and real-time national 'hydrometric'
data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and
<https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
Author: Sam Albers [aut, cre] ,
David Hutchinson [ctb],
Dewey Dunnington [ctb],
Ryan Whaley [ctb],
Province of British Columbia [cph],
Government of Canada [dtc],
Luke Winslow [rev] ,
Laura DeCicco [rev]
Maintainer: Sam Albers <sam.albers@gmail.com>
Diff between tidyhydat versions 0.5.7 dated 2022-10-15 and 0.5.8 dated 2022-11-29
DESCRIPTION | 8 ++--- MD5 | 42 +++++++++++++-------------- NEWS.md | 3 + R/download.R | 1 README.md | 26 ++++++++-------- data/allstations.rda |binary inst/doc/tidyhydat_an_introduction.Rmd | 26 ++++++++-------- inst/doc/tidyhydat_an_introduction.html | 30 +++++++++---------- inst/doc/tidyhydat_example_analysis.Rmd | 16 +++++----- inst/doc/tidyhydat_example_analysis.html | 26 ++++++++-------- inst/doc/tidyhydat_hydat_db.Rmd | 24 ++++++++------- inst/doc/tidyhydat_hydat_db.html | 26 +++++++++------- man/figures/README-unnamed-chunk-7-1.png |binary tests/testthat/_snaps/hy-remote.md | 2 - vignettes/tidyhydat_an_introduction.Rmd | 26 ++++++++-------- vignettes/tidyhydat_example_analysis.Rmd | 16 +++++----- vignettes/tidyhydat_hydat_db.Rmd | 24 ++++++++------- vignettes/vignette-fig-old_rec-1.png |binary vignettes/vignette-fig-old_rec_yr-1.png |binary vignettes/vignette-fig-pcrtile_plt-1.png |binary vignettes/vignette-fig-tile_plt-1.png |binary vignettes/vignette-fig-unnamed-chunk-8-1.png |binary 22 files changed, 153 insertions(+), 143 deletions(-)