Thu, 08 Dec 2022

Package pensim updated to version 1.3.6 with previous version 1.3.3 dated 2021-05-11

Title: Simulation of High-Dimensional Data and Parallelized Repeated Penalized Regression
Description: Simulation of continuous, correlated high-dimensional data with time to event or binary response, and parallelized functions for Lasso, Ridge, and Elastic Net penalized regression with repeated starts and two-dimensional tuning of the Elastic Net.
Author: Levi Waldron <lwaldron.research@gmail.com>
Maintainer: Levi Waldron <lwaldron.research@gmail.com>

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Package geneHapR updated to version 1.1.6 with previous version 1.1.5 dated 2022-12-06

Title: Gene Haplotype Statistics, Phenotype Association and Visualization
Description: Import genome variants data and perform gene haplotype Statistics, visualization and phenotype association with 'R'.
Author: Zhang Renliang [aut, cre], Jia Guanqing [aut]
Maintainer: Zhang Renliang <zhang_renliang@163.com>

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Package roxygen2 updated to version 7.2.3 with previous version 7.2.2 dated 2022-11-11

Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and collation field using specially formatted comments. Writing documentation in-line with code makes it easier to keep your documentation up-to-date as your requirements change. 'roxygen2' is inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph] , Peter Danenberg [aut, cph], Gabor Csardi [aut], Manuel Eugster [aut, cph], RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>

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Package HyRiM updated to version 2.0.2 with previous version 2.0.1 dated 2021-06-22

Title: Multicriteria Risk Management using Zero-Sum Games with Vector-Valued Payoffs that are Probability Distributions
Description: Construction and analysis of multivalued zero-sum matrix games over the abstract space of probability distributions, which describe the losses in each scenario of defense vs. attack action. The distributions can be compiled directly from expert opinions or other empirical data (insofar available). The package implements the methods put forth in the EU project HyRiM (Hybrid Risk Management for Utility Networks), FP7 EU Project Number 608090. The method has been published in Rass, S., König, S., Schauer, S., 2016. Decisions with Uncertain Consequences-A Total Ordering on Loss-Distributions. PLoS ONE 11, e0168583. <doi:10.1371/journal.pone.0168583>, and applied for advanced persistent thread modeling in Rass, S., König, S., Schauer, S., 2017. Defending Against Advanced Persistent Threats Using Game-Theory. PLoS ONE 12, e0168675. <doi:10.1371/journal.pone.0168675>. A volume covering the wider range of aspects of risk management, partially based on the theory implemented in the [...truncated...]
Author: Stefan Rass, Sandra Koenig, Ali Alshawish
Maintainer: "Stefan Rass, on behalf of the Austrian Institute of Technology" <stefan.rass@jku.at>

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Package helminthR updated to version 1.0.10 with previous version 1.0.9 dated 2021-08-16

Title: Access London Natural History Museum Host-Helminth Record Database
Description: Access to large host-parasite data is often hampered by the availability of data and difficulty in obtaining it in a programmatic way to encourage analyses. 'helminthR' provides a programmatic interface to the London Natural History Museum's host-parasite database, one of the largest host-parasite databases existing currently <https://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/>. The package allows the user to query by host species, parasite species, and geographic location.
Author: Tad Dallas [aut, cre]
Maintainer: Tad Dallas <tad.a.dallas@gmail.com>

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Package GAGAs updated to version 0.5.1 with previous version 0.5.0 dated 2022-12-03

Title: Global Adaptive Generative Adjustment Algorithm for Generalized Linear Models
Description: Fits linear regression, logistic and multinomial regression models, Poisson regression, Cox model via Global Adaptive Generative Adjustment Algorithm. For more detailed information, see Bin Wang, Xiaofei Wang and Jianhua Guo (2022) <arXiv:1911.00658>. This paper provides the theoretical properties of Gaga linear model when the load matrix is orthogonal. Further study is going on for the nonorthogonal cases and generalized linear models. These works are in part supported by the National Natural Foundation of China (No.12171076).
Author: Bin Wang [aut, cre], Xiaofei Wang [ctb], Jianhua Guo [ths]
Maintainer: Bin Wang <eatingbeen@hotmail.com>

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Package ardl.nardl updated to version 1.2.1 with previous version 1.2.0 dated 2022-11-28

Title: Linear and Nonlinear Autoregressive Distributed Lag Models: General-to-Specific Approach
Description: Estimate the linear and nonlinear autoregressive distributed lag (ARDL & NARDL) models and the corresponding error correction models, and test for longrun and short-run asymmetric. The general-to-specific approach is also available in estimating the ARDL and NARDL models. The Pesaran, Shin & Smith (2001) (<doi:10.1002/jae.616>) bounds test for level relationships is also provided. The 'ardl.nardl' package also performs short-run and longrun symmetric restrictions available at Shin et al. (2014) <doi:10.1007/978-1-4899-8008-3_9> and their corresponding tests.
Author: Eric I. Otoakhia [aut, cre]
Maintainer: Eric I. Otoakhia <otoakhiai@gmail.com>

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Package spOccupancy updated to version 0.5.1 with previous version 0.5.0 dated 2022-11-16

Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2 [...truncated...]
Author: Jeffrey Doser [aut, cre], Andrew Finley [aut], Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>

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Package rbibutils updated to version 2.2.11 with previous version 2.2.10 dated 2022-11-15

Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and 'Bibentry'. Includes a port of the 'bibutils' utilities by Chris Putnam <https://sourceforge.net/projects/bibutils/>. Supports all bibliography formats and character encodings implemented in 'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] ), Chris Putman [aut] , Richard Mathar [ctb] , Johannes Wilm [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

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Package rsleep updated to version 1.0.5 with previous version 1.0.4 dated 2021-11-28

Title: Analysis of Sleep Data
Description: Provides users functions for sleep data management and analysis such as European Data Format (EDF) to Morpheo Data Format (MDF) conversion: P.Bouchequet, D.Jin, G.Solelhac, M.Chennaoui, D.Leger (2018) <doi:10.1016/j.msom.2018.01.130> "Morpheo Data Format (MDF), un nouveau format de donnees simple, robuste et performant pour stocker et analyser les enregistrements de sommeil". Provides hypnogram statistics computing and visualisation functions from the American Academy of Sleep Medicine (AASM) manual "The AASM Manual for the Scoring of Sleep and Associated Events" <https://aasm.org/clinical-resources/scoring-manual/>.
Author: Paul Bouchequet <paul.bouchequet@frenchkpi.com>
Maintainer: Paul Bouchequet <paul.bouchequet@frenchkpi.com>

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Package argparse updated to version 2.2.1 with previous version 2.1.6 dated 2022-07-17

Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to be used with Rscript to write "#!" shebang scripts that gracefully accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis [aut, cre] , Allen Day [ctb] , Python Software Foundation [ctb] , Paul Newell [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>

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Package expstudy updated to version 1.0.3 with previous version 1.0.2 dated 2022-08-24

Title: Experience Study Tools for Analytics and Communications
Description: Provides a data class of 'tbl_es' to help aid in the formation and analyses of recurrent or novel experience studies. A 'tbl_es' has attributes which identify the key variables used for calculating metrics under an actuarial perspective. Common metrics (such as actual-to-expected analysis) can be quickly generated in aggregate or according to different qualitative factors. If multiple factors are of interest, grouped metrics can be automatically computed for each factor individually as well as for all possible combinations. All resulting output can then be formatted for presentations or left unformatted for subsequent analyses. Ultimately, this package aims to reduce time spent completing repetitive code therefore increasing time for analysis and insight.
Author: Cody Buehler [aut, cre]
Maintainer: Cody Buehler <cb12991@me.com>

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Package ichimoku updated to version 1.4.3 with previous version 1.4.2 dated 2022-10-16

Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as 'cloud charts'. Static and interactive visualizations with tools for creating, backtesting and development of quantitative 'ichimoku' strategies. As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement on candlestick charting, originating from Japan and now in widespread use in technical analysis worldwide. Translating as 'one-glance equilibrium chart', it allows the price action and market structure of financial securities to be determined 'at-a-glance'. Incorporates an interface with the OANDA fxTrade API <https://developer.oanda.com/> for retrieving historical and live streaming price data for major currencies, metals, commodities, government bonds and stock indices.
Author: Charlie Gao [aut, cre] , Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>

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Package binspp updated to version 0.1.26 with previous version 0.1.24 dated 2022-10-08

Title: Bayesian Inference for Neyman-Scott Point Processes
Description: The Bayesian MCMC estimation of parameters for Thomas-type cluster point process with various inhomogeneities. It allows for inhomogeneity in (i) distribution of parent points, (ii) mean number of points in a cluster, (iii) cluster spread. The package also allows for the Bayesian MCMC algorithm for the homogeneous generalized Thomas process. The cluster size is allowed to have a variance that is greater or less than the expected value (cluster sizes are over or under dispersed). Details are described in Dvořák, Remeš, Beránek & Mrkvička (2022) <arXiv: 10.48550/arXiv.2205.07946>.
Author: Mrkvicka Tomas [aut], Dvorak Jiri [aut], Beranek Ladislav [aut], Remes Radim [aut, cre]
Maintainer: Remes Radim <inrem@jcu.cz>

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Package wallace updated to version 2.0.0 with previous version 1.1.3 dated 2022-03-09

Title: A Modular Platform for Reproducible Modeling of Species Niches and Distributions
Description: The 'shiny' application Wallace is a modular platform for reproducible modeling of species niches and distributions. Wallace guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface. An extensive vignette, which guides users through most package functionality can be found on the package's GitHub Pages website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.
Author: Jamie M. Kass [aut], Gonzalo E. Pinilla-Buitrago [aut, cre], Andrea Paz [aut], Bethany A. Johnson [aut], Valentina Grisales-Betancur [aut], Dean Attali [aut], Matthew E. Aiello-Lammens [aut], Cory Merow [aut], Mary E. Blair [aut], Robert P. Anderson [...truncated...]
Maintainer: Gonzalo E. Pinilla-Buitrago <gpinillabuitrago@gradcenter.cuny.edu>

Diff between wallace versions 1.1.3 dated 2022-03-09 and 2.0.0 dated 2022-12-08

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Package sparklyr updated to version 1.7.9 with previous version 1.7.8 dated 2022-08-16

Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general engine for big data processing, see <https://spark.apache.org/>. This package supports connecting to local and remote Apache Spark clusters, provides a 'dplyr' compatible back-end, and provides an interface to Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut], Kevin Kuo [aut] , Kevin Ushey [aut], JJ Allaire [aut], Samuel Macedo [ctb], Hossein Falaki [aut], Lu Wang [aut], Andy Zhang [aut], Yitao Li [aut] , Jozef Hajnala [ctb], Maciej Szymkiewicz [ctb] , Wil Davis [ctb], Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>

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Package Signac updated to version 1.9.0 with previous version 1.8.0 dated 2022-09-21

Title: Analysis of Single-Cell Chromatin Data
Description: A framework for the analysis and exploration of single-cell chromatin data. The 'Signac' package contains functions for quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis. Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.
Author: Tim Stuart [aut, cre] , Avi Srivastava [aut] , Paul Hoffman [ctb] , Rahul Satija [ctb]
Maintainer: Tim Stuart <tstuart@nygenome.org>

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Package matlib updated to version 0.9.6 with previous version 0.9.5 dated 2021-08-21

Title: Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix linear algebra as used in multivariate statistical methods. These functions are mainly for tutorial purposes in learning matrix algebra ideas using R. In some cases, functions are provided for concepts available elsewhere in R, but where the function call or name is not obvious. In other cases, functions are provided to show or demonstrate an algorithm. In addition, a collection of functions are provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre] , John Fox [aut], Phil Chalmers [aut], Georges Monette [ctb], Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>

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Package doBy updated to version 4.6.15 with previous version 4.6.14 dated 2022-10-17

Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing: 1) Facilities for working with grouped data: 'do' something to data stratified 'by' some variables. 2) LSmeans (least-squares means), general linear estimates. 3) Restrict functions to a smaller domain. 4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh <uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>

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New package GPArotateDF with initial version 2022.12-1
Package: GPArotateDF
Version: 2022.12-1
Title: Derivative Free Gradient Projection Factor Rotation
Depends: R (>= 2.0.0)
Description: Derivative Free Gradient Projection Algorithms for Factor Rotation. For more details see ?GPArotateDF. Theory for these functions can be found in the following publications: Jennrich (2004) <doi:10.1007/BF02295647>. Bernaards and Jennrich (2005) <doi:10.1177/0013164404272507>.
Imports: GPArotation
License: GPL (>= 2)
NeedsCompilation: no
Packaged: 2022-12-08 12:50:18 UTC; coen
Author: Coen Bernaards [cre], Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Repository: CRAN
Date/Publication: 2022-12-08 16:52:31 UTC

More information about GPArotateDF at CRAN
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Package LassoBacktracking updated to version 1.1 with previous version 1.0 dated 2022-10-20

Title: Modelling Interactions in High-Dimensional Data with Backtracking
Description: Implementation of the algorithm introduced in Shah, R. D. (2016) <https://www.jmlr.org/papers/volume17/13-515/13-515.pdf>. Data with thousands of predictors can be handled. The algorithm performs sequential Lasso fits on design matrices containing increasing sets of candidate interactions. Previous fits are used to greatly speed up subsequent fits, so the algorithm is very efficient.
Author: Rajen Shah [aut, cre]
Maintainer: Rajen Shah <r.shah@statslab.cam.ac.uk>

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Package glmmrBase updated to version 0.2.3 with previous version 0.2.2 dated 2022-12-03

Title: Specification of Generalised Linear Mixed Models
Description: Specification of generalised linear mixed models using the 'R6' object-orientated class system. The package provides classes 'Covariance', 'MeanFunction' and 'Model', which allow for flexible specification of generalised linear mixed models, as well as functionality to produce relevant matrices, values, and analyses. See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a detailed manual.
Author: Sam Watson [aut, cre], Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>

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Package EpiInvert updated to version 0.3.0 with previous version 0.2.1 dated 2022-10-16

Title: Variational Techniques in Epidemiology
Description: Using variational techniques we address some epidemiological problems as the incidence curve decomposition by inverting the renewal equation as described in Alvarez et al. (2021) <doi:10.1073/pnas.2105112118> and Alvarez et al. (2022) <doi:10.3390/biology11040540> or the estimation of the functional relationship between epidemiological indicators. We also propose a learning method for the short time forecast of the trend incidence curve as described in Morel et al. (2022) <doi:10.1101/2022.11.05.22281904>.
Author: Luis Alvarez [aut, cre] , Jean-David Morel [ctb] , Jean-Michel Morel [ctb]
Maintainer: Luis Alvarez <lalvarez@ulpgc.es>

Diff between EpiInvert versions 0.2.1 dated 2022-10-16 and 0.3.0 dated 2022-12-08

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Package rvg updated to version 0.3.0 with previous version 0.2.5 dated 2020-06-30

Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and 'Microsoft Excel'. Functions extending package 'officer' are provided to embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and 'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre], Bob Rudis [ctb] , Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between rvg versions 0.2.5 dated 2020-06-30 and 0.3.0 dated 2022-12-08

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More information about rvg at CRAN
Permanent link

New package shinyDatetimePickers with initial version 1.0.0
Package: shinyDatetimePickers
Title: Some Datetime Pickers for 'Shiny'
Version: 1.0.0
Description: Provides three types of datetime pickers for usage in a 'Shiny' UI. A datetime picker is an input field for selecting both a date and a time.
License: GPL-3
Encoding: UTF-8
Imports: htmltools, shiny, reactR, lubridate
NeedsCompilation: no
Packaged: 2022-12-07 16:26:22 UTC; stla
Author: Stephane Laurent [aut, cre], Wojciech Maj [cph] ), Porinn [cph] ), Dmitriy Kovalenko [cph] )
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Repository: CRAN
Date/Publication: 2022-12-08 14:00:02 UTC

More information about shinyDatetimePickers at CRAN
Permanent link

Package MSbox updated to version 1.4.8 with previous version 1.4.6 dated 2022-02-24

Title: Mass Spectrometry Tools
Description: Common mass spectrometry tools described in John Roboz (2013) <doi:10.1201/b15436>. It allows checking element isotopes, calculating (isotope labelled) exact monoisitopic mass, m/z values and mass accuracy, and inspecting possible contaminant mass peaks, examining possible adducts in electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI) ion sources.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>

Diff between MSbox versions 1.4.6 dated 2022-02-24 and 1.4.8 dated 2022-12-08

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More information about MSbox at CRAN
Permanent link

New package facebookorganicR with initial version 0.1.0
Package: facebookorganicR
Title: Get Data from 'Facebook Organic' via the 'Windsor.ai' API
Version: 0.1.0
Description: Collect your data on digital marketing campaigns from 'Facebook Organic' using the 'Windsor.ai' API <https://windsor.ai/api-fields/>.
License: GPL-3
URL: https://windsor.ai/
Depends: R (>= 3.5.0)
Imports: jsonlite (>= 1.7.2)
Suggests: knitr, rmarkdown, dplyr, ggplot2, tidyr, curl
VignetteBuilder: knitr
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2022-12-07 19:36:14 UTC; pablo
Author: Pablo Sanchez [cre, aut], Windsor.ai [cph]
Maintainer: Pablo Sanchez <pablosama@outlook.es>
Repository: CRAN
Date/Publication: 2022-12-08 14:00:05 UTC

More information about facebookorganicR at CRAN
Permanent link

New package transform.hazards with initial version 0.1.0
Package: transform.hazards
Title: Transforms Cumulative Hazards to Parameter Specified by ODE System
Version: 0.1.0
Description: Targets parameters that solve Ordinary Differential Equations (ODEs) driven by a vector of cumulative hazard functions. The package provides a method for estimating these parameters using an estimator defined by a corresponding Stochastic Differential Equation (SDE) system driven by cumulative hazard estimates. By providing cumulative hazard estimates as input, the package gives estimates of the parameter as output, along with pointwise (co)variances derived from an asymptotic expression. Examples of parameters that can be targeted in this way include the survival function, the restricted mean survival function, cumulative incidence functions, among others; see Ryalen, Stensrud, and Røysland (2018) <doi:10.1093/biomet/asy035>, and further applications in Stensrud, Røysland, and Ryalen (2019) <doi:10.1111/biom.13102> and Ryalen et al. (2021) <doi:10.1093/biostatistics/kxab009>.
License: GPL (>= 3)
Suggests: timereg, knitr, rmarkdown
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2022-12-07 07:56:04 UTC; waldir
Author: Pål Christie Ryalen [aut, cre]
Maintainer: Pål Christie Ryalen <p.c.ryalen@medisin.uio.no>
Repository: CRAN
Date/Publication: 2022-12-08 13:50:02 UTC

More information about transform.hazards at CRAN
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Package quanteda updated to version 3.2.4 with previous version 3.2.3 dated 2022-08-29

Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for quantitative text analysis in R. Provides functionality for corpus management, creating and manipulating tokens and n-grams, exploring keywords in context, forming and manipulating sparse matrices of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and distances, applying content dictionaries, applying supervised and unsupervised machine learning, visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph] , Kohei Watanabe [aut] , Haiyan Wang [aut] , Paul Nulty [aut] , Adam Obeng [aut] , Stefan Mueller [aut] , Akitaka Matsuo [aut] , William Lowe [aut] , Christian Mueller [ctb], European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>

Diff between quanteda versions 3.2.3 dated 2022-08-29 and 3.2.4 dated 2022-12-08

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New package NPCox with initial version 1.1
Package: NPCox
Title: Nonparametric and Semiparametric Proportional Hazards Model
Version: 1.1
Author: Qi Yang [aut, cre], Kuan Yang [aut], Han Wang [ctb], Xinyuan Song [ctb]
Maintainer: Qi Yang <qiyang-sdu@outlook.com>
Description: An estimation procedure for the analysis of nonparametric proportional hazards model (e.g. h(t) = h0(t)exp(b(t)'Z)), providing estimation of b(t) and its pointwise standard errors, and semiparametric proportional hazards model (e.g. h(t) = h0(t)exp(b(t)'Z1 + c*Z2)), providing estimation of b(t), c and their standard errors. More details can be found in Lu Tian et al. (2005) <doi:10.1198/016214504000000845>.
License: GPL-3
Depends: stats,graphics
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Packaged: 2022-12-07 02:24:05 UTC; YANG QI
Repository: CRAN
Date/Publication: 2022-12-08 13:52:33 UTC

More information about NPCox at CRAN
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New package HodgesTools with initial version 1.0.0
Package: HodgesTools
Title: Common Use Tools for Genomic Analysis
Version: 1.0.0
Description: Built by Hodges lab members for current and future Hodges lab members. Other individuals are welcome to use as well. Provides useful functions that the lab uses everyday to analyze various genomic datasets. Critically, only general use functions are provided; functions specific to a given technique are reserved for a separate package. As the lab grows, we expect to continue adding functions to the package to build on previous lab members code.
Depends: R (>= 3.6)
License: GPL (>= 3)
Encoding: UTF-8
Imports: dplyr, ggplot2, magrittr, RColorBrewer, readr, ini, qqman, data.table, RecordLinkage
NeedsCompilation: no
Packaged: 2022-11-05 16:08:26 UTC; tyler
Author: Tyler Hansen [aut, cre, cph], Tim Scott [aut, ctb, cph], Lindsey Guerin [aut, ctb, cph], Verda Agan [aut, ctb, cph], Emily Hodges [aut, fnd, cph]
Maintainer: Tyler Hansen <tyler.j.hansen@vanderbilt.edu>
Repository: CRAN
Date/Publication: 2022-12-08 13:52:36 UTC

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Package timeDate updated to version 4021.107 with previous version 4021.106 dated 2022-09-30

Title: Rmetrics - Chronological and Calendar Objects
Description: The 'timeDate' class fulfils the conventions of the ISO 8601 standard as well as of the ANSI C and POSIX standards. Beyond these standards it provides the "Financial Center" concept which allows to handle data records collected in different time zones and mix them up to have always the proper time stamps with respect to your personal financial center, or alternatively to the GMT reference time. It can thus also handle time stamps from historical data records from the same time zone, even if the financial centers changed day light saving times at different calendar dates.
Author: Diethelm Wuertz [aut] , Tobias Setz [aut], Yohan Chalabi [aut], Martin Maechler [ctb] , Joe W. Byers [ctb], Georgi N. Boshnakov [cre, aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>

Diff between timeDate versions 4021.106 dated 2022-09-30 and 4021.107 dated 2022-12-08

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Package ParallelLogger updated to version 3.1.0 with previous version 3.0.1 dated 2022-06-07

Title: Support for Parallel Computation, Logging, and Function Automation
Description: Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk, and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in parallel).
Author: Martijn Schuemie [aut, cre], Marc Suchard [aut], Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>

Diff between ParallelLogger versions 3.0.1 dated 2022-06-07 and 3.1.0 dated 2022-12-08

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Package NO.PING.PONG updated to version 0.1.6 with previous version 0.1.4 dated 2021-07-05

Title: Incorporating Previous Findings When Evaluating New Data
Description: Functions for revealing what happens when effect size estimates from previous studies are taken into account when evaluating each new dataset in a study sequence. The analyses can be conducted for cumulative meta-analyses and for Bayesian data analyses. The package contains sample data for a wide selection of research topics. Jointly considering previous findings along with new data is more likely to result in correct conclusions than does the traditional practice of not incorporating previous findings, which often results in a back and forth ping-pong of conclusions when evaluating a sequence of studies. O'Connor & Ermacora (2021, <doi:10.3758/bf03200807>).
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>

Diff between NO.PING.PONG versions 0.1.4 dated 2021-07-05 and 0.1.6 dated 2022-12-08

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Package clinicalsignificance updated to version 1.2.0 with previous version 1.0.0 dated 2022-06-03

Title: Determine the Clinical Significance in Clinical Trials
Description: A clinical significance analysis can be used to determine if an intervention has a meaningful or practical effect for patients. You provide a tidy data set plus a few more metrics and this package will take care of it to make your results publication ready as proposed by Jacobson et al., (1984) <doi:10.1016/S0005-7894(84)80002-7>.
Author: Benedikt Claus [aut, cre]
Maintainer: Benedikt Claus <b.claus@pedscience.de>

Diff between clinicalsignificance versions 1.0.0 dated 2022-06-03 and 1.2.0 dated 2022-12-08

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Package SSBtools updated to version 1.3.8 with previous version 1.3.4 dated 2022-08-16

Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Oyvind Langsrud [aut, cre], Daniel Lupp [aut], Bjoern-Helge Mevik [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>

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Package adaptiveGPCA updated to version 0.1.3 with previous version 0.1.2 dated 2018-03-14

Title: Adaptive Generalized PCA
Description: Implements adaptive gPCA, as described in: Fukuyama, J. (2017) <arXiv:1702.00501>. The package also includes functionality for applying the method to 'phyloseq' objects so that the method can be easily applied to microbiome data and a 'shiny' app for interactive visualization.
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama@gmail.com>

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Package robustlmm updated to version 3.1-2 with previous version 3.1-1 dated 2022-12-02

Title: Robust Linear Mixed Effects Models
Description: Implements the Robust Scoring Equations estimator to fit linear mixed effects models robustly. Robustness is achieved by modification of the scoring equations combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <kollerma@proton.me>

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Package respR updated to version 2.1.0 with previous version 2.0.2 dated 2022-03-25

Title: Import, Process, Analyse, and Calculate Rates from Respirometry Data
Description: Provides a structural, reproducible workflow for the processing and analysis of respirometry data. It contains analytical functions and utilities for working with oxygen time-series to determine respiration or oxygen production rates, and to make it easier to report and share analyses.
Author: Nicholas Carey [aut, cre], Januar Harianto [aut]
Maintainer: Nicholas Carey <nicholascarey@gmail.com>

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 respR-2.1.0/respR/tests/testthat/test-oxy_crit.R        |  464 +++---
 respR-2.1.0/respR/tests/testthat/test-select_rate.R     |only
 respR-2.1.0/respR/tests/testthat/test-subset_data.R     |   22 
 122 files changed, 2472 insertions(+), 1779 deletions(-)

More information about respR at CRAN
Permanent link

New package gausscov with initial version 1.0.0
Package: gausscov
Version: 1.0.0
Date: 2022-11-30
Title: The Gaussian Covariate Method for Variable Selection
Author: Laurie Davies [aut, cre]
Maintainer: Laurie Davies <pldavies44@cantab.net>
Description: Given the standard linear model the traditional way of deciding whether to include the jth covariate is to apply the F-test to decide whether the corresponding beta coefficient is zero. The Gaussian covariate method is completely different. The question as to whether the beta coefficient is or is not zero is replaced by the question as to whether the covariate is better or worse than i.i.d. Gaussian noise. The P-value for the covariate is the probability that Gaussian noise is better. Surprisingly this can be given exactly and it is the same a the P-value for the classical model based on the F-distribution. The Gaussian covariate P-value is model free, it is the same for any data set. Using the idea it is possible to do covariate selection for a small number of covariates 25 by considering all subsets. Post selection inference causes no problems as the P-values hold whatever the data. The idea extends to stepwise regression again with exact probabilities. In the simplest version the [...truncated...]
LazyData: true
License: GPL-3
Depends: R (>= 3.5.0), stats
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2022-12-01 13:57:28 UTC; laurie
Repository: CRAN
Date/Publication: 2022-12-08 10:10:06 UTC

More information about gausscov at CRAN
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Package duckdb updated to version 0.6.1 with previous version 0.6.0 dated 2022-11-25

Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management system with support for the Structured Query Language (SQL). This package includes all of DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] , Mark Raasveldt [aut] , Stichting DuckDB Foundation [cph], Apache Software Foundation [cph], PostgreSQL Global Development Group [cph], The Regents of the University of California [cph], Cameron Desrochers [cph], Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>

Diff between duckdb versions 0.6.0 dated 2022-11-25 and 0.6.1 dated 2022-12-08

 duckdb-0.6.0/duckdb/man/expr_constant.Rd                                                                 |only
 duckdb-0.6.0/duckdb/man/expr_function.Rd                                                                 |only
 duckdb-0.6.0/duckdb/man/expr_reference.Rd                                                                |only
 duckdb-0.6.0/duckdb/man/expr_set_alias.Rd                                                                |only
 duckdb-0.6.0/duckdb/man/expr_tostring.Rd                                                                 |only
 duckdb-0.6.0/duckdb/man/rel_aggregate.Rd                                                                 |only
 duckdb-0.6.0/duckdb/man/rel_alias.Rd                                                                     |only
 duckdb-0.6.0/duckdb/man/rel_distinct.Rd                                                                  |only
 duckdb-0.6.0/duckdb/man/rel_explain.Rd                                                                   |only
 duckdb-0.6.0/duckdb/man/rel_filter.Rd                                                                    |only
 duckdb-0.6.0/duckdb/man/rel_from_df.Rd                                                                   |only
 duckdb-0.6.0/duckdb/man/rel_inner_join.Rd                                                                |only
 duckdb-0.6.0/duckdb/man/rel_order.Rd                                                                     |only
 duckdb-0.6.0/duckdb/man/rel_project.Rd                                                                   |only
 duckdb-0.6.0/duckdb/man/rel_set_alias.Rd                                                                 |only
 duckdb-0.6.0/duckdb/man/rel_sql.Rd                                                                       |only
 duckdb-0.6.0/duckdb/src/altrep.cpp                                                                       |only
 duckdb-0.6.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp                |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/decimal_cast.hpp              |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/list.hpp                            |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table_as.hpp |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/main/capi_internal.hpp                                 |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/managed_buffer.hpp                      |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/table_index.hpp                                |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/table_statistics.hpp                           |only
 duckdb-0.6.0/duckdb/src/duckdb/src/include/extension_functions.hpp                                       |only
 duckdb-0.6.0/duckdb/src/duckdb/src/storage/buffer/managed_buffer.cpp                                     |only
 duckdb-0.6.0/duckdb/src/duckdb/src/storage/table_index.cpp                                               |only
 duckdb-0.6.0/duckdb/src/include/altrepstring.hpp                                                         |only
 duckdb-0.6.1/duckdb/DESCRIPTION                                                                          |    6 
 duckdb-0.6.1/duckdb/MD5                                                                                  |  386 +--
 duckdb-0.6.1/duckdb/NAMESPACE                                                                            |   16 
 duckdb-0.6.1/duckdb/R/cpp11.R                                                                            |   16 
 duckdb-0.6.1/duckdb/R/dbQuoteIdentifier__duckdb_connection.R                                             |   10 
 duckdb-0.6.1/duckdb/R/relational.R                                                                       |   86 
 duckdb-0.6.1/duckdb/src/Makevars                                                                         |    2 
 duckdb-0.6.1/duckdb/src/Makevars.win                                                                     |    2 
 duckdb-0.6.1/duckdb/src/cpp11.cpp                                                                        |   36 
 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/column_reader.cpp                                       |    2 
 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/column_writer.cpp                                       |    3 
 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp                                      |    3 
 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp                                  |   12 
 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_entry.cpp                                             |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp                         |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_set.cpp                                               |  141 -
 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/default/default_views.cpp                                     |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/dependency_manager.cpp                                        |   12 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/allocator.cpp                                                  |   20 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/box_renderer.cpp                                               |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/radix_partitioning.cpp                                         |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/sort/radix_sort.cpp                                            |   15 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/sort/sort_state.cpp                                            |    5 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/column_data_allocator.cpp                                |   12 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/column_data_collection_segment.cpp                       |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/hash.cpp                                                 |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/hugeint.cpp                                              |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/partitioned_column_data.cpp                              |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/string_heap.cpp                                          |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp                              |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp                                 |   29 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/index/art/art.cpp                                           |   13 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/join_hashtable.cpp                                          |   23 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp                  |   45 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp                  |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp                    |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp                        |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp                       |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp                 |    9 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp               |   24 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp                     |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp                      |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp                         |   22 
 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp                               |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp                              |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp                                    |  203 +
 duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/regression/regr_count.cpp                          |    9 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp                                    |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp                                     |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/struct/struct_insert.cpp                              |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp                            |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp                             |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb.h                                                      |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp                              |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp          |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp                                |   51 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/mapping_value.hpp                              |only
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp                                   |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/add.hpp                                |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/convert_to_string.hpp                  |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp                           |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp                           |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp                                       |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/type_util.hpp                                   |only
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types.hpp                                       |  257 --
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp                 |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp                                  |   81 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/datetime.hpp                              |only
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp                                  |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp                               |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp                              |   14 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/null_value.hpp                            |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/partitioned_column_data.hpp               |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp                   |   27 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp                           |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp                                  |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp                             |  119 +
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp                                 |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/column_binding_resolver.hpp                  |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp                           |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp              |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp  |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp                                      |   15 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/config.hpp                                        |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/db_instance_cache.hpp                             |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp                                      |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer.hpp                                |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp                                  |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp            |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp    |only
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp                           |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp                 |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp           |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp                    |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp                    |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp                 |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp                |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp            |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp        |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp                       |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp                    |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_projection.hpp                |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp             |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp             |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unnest.hpp                    |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_window.hpp                    |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator_extension.hpp                         |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp                        |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp                             |   19 
 duckdb-0.6.1/duckdb/src/duckdb/src/main/appender.cpp                                                     |   50 
 duckdb-0.6.1/duckdb/src/duckdb/src/main/client_context.cpp                                               |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/main/config.cpp                                                       |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/main/db_instance_cache.cpp                                            |   27 
 duckdb-0.6.1/duckdb/src/duckdb/src/main/settings/settings.cpp                                            |   22 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/deliminator.cpp                                             |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp                                         |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp                                           |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp                                         |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/optimizer.cpp                                               |   14 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pullup/pullup_both_side.cpp                                 |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pullup/pullup_filter.cpp                                    |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_filter.cpp                                |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp                             |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp                         |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp                          |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp                        |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp                        |   11 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp                           |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp                                |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp                        |   28 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp                              |    6 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp                             |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp                              |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp                              |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp                             |    1 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp                              |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp                              |   14 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp                         |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp                       |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp                           |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/expression_binder/table_function_binder.cpp                   |only
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/logical_operator.cpp                                          |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp                                |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp                          |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp                                   |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp                                   |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_delim_get.cpp                                |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_dummy_scan.cpp                               |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_expression_get.cpp                           |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_extension_operator.cpp                       |only
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_get.cpp                                      |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp                                   |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp                               |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_recursive_cte.cpp                            |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp                                   |    7 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_set_operation.cpp                            |    5 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp                                   |    5 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_window.cpp                                   |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/planner.cpp                                                   |    2 
 duckdb-0.6.1/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp                           |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/buffer_manager.cpp                                            |   27 
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 duckdb-0.6.1/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp                           |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/data_table.cpp                                                |    8 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/local_storage.cpp                                             |   16 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp                                 |    4 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/table/column_segment.cpp                                      |   10 
 duckdb-0.6.1/duckdb/src/duckdb/src/storage/table/update_segment.cpp                                      |    3 
 duckdb-0.6.1/duckdb/src/duckdb/src/transaction/cleanup_state.cpp                                         |    5 
 duckdb-0.6.1/duckdb/src/duckdb/third_party/fsst/libfsst.cpp                                              | 1087 +++++-----
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 duckdb-0.6.1/duckdb/src/duckdb/ub_src_planner_operator.cpp                                               |    2 
 duckdb-0.6.1/duckdb/src/include/rapi.hpp                                                                 |    6 
 duckdb-0.6.1/duckdb/src/include/reltoaltrep.hpp                                                          |only
 duckdb-0.6.1/duckdb/src/relational.cpp                                                                   |    4 
 duckdb-0.6.1/duckdb/src/reltoaltrep.cpp                                                                  |only
 duckdb-0.6.1/duckdb/src/scan.cpp                                                                         |   11 
 duckdb-0.6.1/duckdb/src/statement.cpp                                                                    |  459 ----
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 duckdb-0.6.1/duckdb/src/utils.cpp                                                                        |    1 
 duckdb-0.6.1/duckdb/tests/testthat/test_null_byte.R                                                      |    6 
 duckdb-0.6.1/duckdb/tests/testthat/test_relational.R                                                     |   32 
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Package reactable updated to version 0.4.1 with previous version 0.4.0 dated 2022-12-04

Title: Interactive Data Tables for R
Description: Interactive data tables for R, based on the 'React Table' JavaScript library. Provides an HTML widget that can be used in 'R Markdown' or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre], Tanner Linsley [ctb, cph] , Emotion team and other contributors [ctb, cph] , Kent Russell [ctb, cph] , Ramnath Vaidyanathan [ctb, cph] , Joe Cheng [ctb, cph] , JJ Allaire [ctb, cph] , Yihui Xie [ctb, cph] , Kenton Russell [ctb, c [...truncated...]
Maintainer: Greg Lin <glin@glin.io>

Diff between reactable versions 0.4.0 dated 2022-12-04 and 0.4.1 dated 2022-12-08

 DESCRIPTION                     |    6 +++---
 MD5                             |    8 ++++----
 NEWS.md                         |    6 ++++++
 inst/htmlwidgets/reactable.yaml |    2 +-
 tests/testthat/test-reactable.R |   13 +++++++++++++
 5 files changed, 27 insertions(+), 8 deletions(-)

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Package nseval updated to version 0.4.3 with previous version 0.4.2 dated 2022-05-24

Title: Tools for Lazy and Non-Standard Evaluation
Description: Functions to capture, inspect, manipulate, and create lazy values (promises), "..." lists, and active calls.
Author: Peter Meilstrup <peter.meilstrup@gmail.com>
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>

Diff between nseval versions 0.4.2 dated 2022-05-24 and 0.4.3 dated 2022-12-08

 DESCRIPTION      |   10 ++++-----
 MD5              |   20 +++++++++----------
 NEWS.md          |   13 +++++++++---
 man/caller.Rd    |    6 +++--
 man/do.Rd        |   12 +++++++----
 src/dots.c       |   35 +++++++++++++++++++---------------
 src/getpromise.c |   56 ++++++++++++++++++++++++++++++++++---------------------
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 src/promises.h   |    2 -
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New package MfUSampler with initial version 1.1.0
Package: MfUSampler
Title: Multivariate-from-Univariate (MfU) MCMC Sampler
Version: 1.1.0
Date: 2022-12-08
Author: Alireza S. Mahani, Mansour T.A. Sharabiani
Maintainer: Alireza S. Mahani <alireza.s.mahani@gmail.com>
Description: Convenience functions for multivariate MCMC using univariate samplers including: slice sampler with stepout and shrinkage (Neal (2003) <DOI:10.1214/aos/1056562461>), adaptive rejection sampler (Gilks and Wild (1992) <DOI:10.2307/2347565>), adaptive rejection Metropolis (Gilks et al (1995) <DOI:10.2307/2986138>), and univariate Metropolis with Gaussian proposal.
License: GPL (>= 2)
Imports: ars, coda, dlm
Suggests: sns, RcppArmadillo, inline, mvtnorm
NeedsCompilation: no
Packaged: 2022-12-08 05:10:49 UTC; ec2-user
Repository: CRAN
Date/Publication: 2022-12-08 08:02:34 UTC

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Package bbotk updated to version 0.7.2 with previous version 0.7.1 dated 2022-11-30

Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox' package and optimizes every user-defined objective function. The package includes several optimization algorithms e.g. Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband (in 'mlr3hyperband'). bbotk is the base package of 'mlr3tuning', 'mlr3fselect' and 'miesmuschel'.
Author: Marc Becker [cre, aut] , Jakob Richter [aut] , Michel Lang [aut] , Bernd Bischl [aut] , Martin Binder [aut], Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>

Diff between bbotk versions 0.7.1 dated 2022-11-30 and 0.7.2 dated 2022-12-08

 DESCRIPTION                         |   16 +-
 MD5                                 |   14 +-
 NEWS.md                             |    4 
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Package AsioHeaders updated to version 1.22.1-2 with previous version 1.22.1-1 dated 2022-06-14

Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level I/O programming that provides developers with a consistent asynchronous model using a modern C++ approach. It is also included in Boost but requires linking when used with Boost. Standalone it can be used header-only (provided a recent compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between AsioHeaders versions 1.22.1-1 dated 2022-06-14 and 1.22.1-2 dated 2022-12-08

 ChangeLog                                          |   13 +++++++++++++
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 MD5                                                |   14 +++++++-------
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Package FIESTA updated to version 3.5.0 with previous version 3.4.2 dated 2022-08-10

Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based inventory data from the U.S. Department of Agriculture, Forest Service, Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut], Gretchen Moisen [aut], Paul Patterson [aut], Chris Toney [aut], Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>

Diff between FIESTA versions 3.4.2 dated 2022-08-10 and 3.5.0 dated 2022-12-08

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More information about FIESTA at CRAN
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