Title: Simulation of High-Dimensional Data and Parallelized Repeated
Penalized Regression
Description: Simulation of continuous, correlated high-dimensional data with
time to event or binary response, and parallelized functions for Lasso,
Ridge, and Elastic Net penalized regression with repeated starts and
two-dimensional tuning of the Elastic Net.
Author: Levi Waldron <lwaldron.research@gmail.com>
Maintainer: Levi Waldron <lwaldron.research@gmail.com>
Diff between pensim versions 1.3.3 dated 2021-05-11 and 1.3.6 dated 2022-12-08
pensim-1.3.3/pensim/README.md |only pensim-1.3.6/pensim/DESCRIPTION | 10 pensim-1.3.6/pensim/MD5 | 23 - pensim-1.3.6/pensim/NAMESPACE | 1 pensim-1.3.6/pensim/R/create.data.R | 10 pensim-1.3.6/pensim/R/opt.nested.crossval.R | 2 pensim-1.3.6/pensim/R/opt2D.R | 8 pensim-1.3.6/pensim/build/vignette.rds |binary pensim-1.3.6/pensim/inst/doc/pensim.R | 13 pensim-1.3.6/pensim/inst/doc/pensim.Rmd | 13 pensim-1.3.6/pensim/inst/doc/pensim.html | 470 +++++++++++++++++++------ pensim-1.3.6/pensim/man/opt.nested.crossval.Rd | 8 pensim-1.3.6/pensim/vignettes/pensim.Rmd | 13 13 files changed, 428 insertions(+), 143 deletions(-)
Title: Gene Haplotype Statistics, Phenotype Association and
Visualization
Description: Import genome variants data and perform gene haplotype Statistics,
visualization and phenotype association with 'R'.
Author: Zhang Renliang [aut, cre],
Jia Guanqing [aut]
Maintainer: Zhang Renliang <zhang_renliang@163.com>
Diff between geneHapR versions 1.1.5 dated 2022-12-06 and 1.1.6 dated 2022-12-08
geneHapR-1.1.5/geneHapR/inst/doc/geneHapR_data.R |only geneHapR-1.1.5/geneHapR/inst/doc/geneHapR_data.Rmd |only geneHapR-1.1.5/geneHapR/inst/doc/geneHapR_data.html |only geneHapR-1.1.5/geneHapR/inst/doc/workflow.Rmd |only geneHapR-1.1.5/geneHapR/inst/doc/workflow.html |only geneHapR-1.1.5/geneHapR/vignettes/geneHapR_data.Rmd |only geneHapR-1.1.5/geneHapR/vignettes/workflow.Rmd |only geneHapR-1.1.6/geneHapR/DESCRIPTION | 6 geneHapR-1.1.6/geneHapR/MD5 | 28 geneHapR-1.1.6/geneHapR/R/hap2seqs.R | 25 geneHapR-1.1.6/geneHapR/R/vis_LDheatmap.R | 3 geneHapR-1.1.6/geneHapR/R/vis_phenos.R | 2 geneHapR-1.1.6/geneHapR/build/vignette.rds |binary geneHapR-1.1.6/geneHapR/inst/doc/Introduction_of_geneHapR.Rmd | 1 geneHapR-1.1.6/geneHapR/inst/doc/Introduction_of_geneHapR.html | 1002 +++++----- geneHapR-1.1.6/geneHapR/man/LDheatmap.Rd | 393 +-- geneHapR-1.1.6/geneHapR/man/hapVsPhenos.Rd | 2 geneHapR-1.1.6/geneHapR/vignettes/Introduction_of_geneHapR.Rmd | 1 geneHapR-1.1.6/geneHapR/vignettes/geneHapR_data.html |only 19 files changed, 760 insertions(+), 703 deletions(-)
Title: In-Line Documentation for R
Description: Generate your Rd documentation, 'NAMESPACE' file, and
collation field using specially formatted comments. Writing
documentation in-line with code makes it easier to keep your
documentation up-to-date as your requirements change. 'roxygen2' is
inspired by the 'Doxygen' system for C++.
Author: Hadley Wickham [aut, cre, cph]
,
Peter Danenberg [aut, cph],
Gabor Csardi [aut],
Manuel Eugster [aut, cph],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between roxygen2 versions 7.2.2 dated 2022-11-11 and 7.2.3 dated 2022-12-08
DESCRIPTION | 16 ++-- MD5 | 38 +++++----- NEWS.md | 8 ++ R/markdown.R | 11 +- R/select-args.R | 5 + R/tag-metadata.R | 2 R/utils.R | 9 -- inst/roxygen2-tags.yml | 130 +++++++++++++++++------------------ man/tags-index-crossref.Rd | 29 ++++--- man/tags-namespace.Rd | 44 +++++------ man/tags-rd-formatting.Rd | 4 - man/tags-rd-other.Rd | 20 ++--- man/tags-rd.Rd | 49 +++++++------ man/tags-reuse.Rd | 49 ++++++------- tests/testthat/_snaps/markdown.md | 22 +++++ tests/testthat/_snaps/rd-inherit.md | 10 ++ tests/testthat/_snaps/select-args.md | 12 +-- tests/testthat/test-markdown.R | 22 +++++ tests/testthat/test-rd-inherit.R | 17 ++++ tests/testthat/test-select-args.R | 9 +- 20 files changed, 295 insertions(+), 211 deletions(-)
Title: Multicriteria Risk Management using Zero-Sum Games with
Vector-Valued Payoffs that are Probability Distributions
Description: Construction and analysis of multivalued zero-sum matrix games over the abstract space of probability distributions, which describe the losses in each scenario of defense vs. attack action. The distributions can be compiled directly from expert opinions or other empirical data (insofar available). The package implements the methods put forth in the EU project HyRiM (Hybrid Risk Management for Utility Networks), FP7 EU Project Number 608090. The method has been published in Rass, S., König, S., Schauer, S., 2016. Decisions with Uncertain Consequences-A Total Ordering on Loss-Distributions. PLoS ONE 11, e0168583. <doi:10.1371/journal.pone.0168583>, and applied for advanced persistent thread modeling in Rass, S., König, S., Schauer, S., 2017. Defending Against Advanced Persistent Threats Using Game-Theory. PLoS ONE 12, e0168675. <doi:10.1371/journal.pone.0168675>. A volume covering the wider range of aspects of risk management, partially based on the theory implemented in the [...truncated...]
Author: Stefan Rass, Sandra Koenig, Ali Alshawish
Maintainer: "Stefan Rass, on behalf of the Austrian Institute of Technology" <stefan.rass@jku.at>
Diff between HyRiM versions 2.0.1 dated 2021-06-22 and 2.0.2 dated 2022-12-08
DESCRIPTION | 12 ++--- MD5 | 32 +++++++------- NAMESPACE | 3 - NEWS | 16 ++++--- R/disappointmentRate.R | 5 +- R/preference.R | 44 +++++++++++-------- R/utils.R | 104 ++++++++++++++++++++++++++++++++++++++++++++-- R/z[.mosg.R | 9 ++- R/z[_-.mosg.R | 15 ++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette.pdf |binary man/HyRiM-package.Rd | 6 ++ man/disappointmentRate.Rd | 2 man/mgss.Rd | 12 +++-- man/mosg.Rd | 4 - man/mosg.equilibrium.Rd | 6 -- 17 files changed, 197 insertions(+), 73 deletions(-)
Title: Access London Natural History Museum Host-Helminth Record
Database
Description: Access to large host-parasite data is often hampered by the
availability of data and difficulty in obtaining it in a programmatic way
to encourage analyses. 'helminthR' provides a programmatic interface to the
London Natural History Museum's host-parasite database, one of the largest
host-parasite databases existing currently <https://www.nhm.ac.uk/research-curation/scientific-resources/taxonomy-systematics/host-parasites/>. The package allows the user
to query by host species, parasite species, and geographic location.
Author: Tad Dallas [aut, cre]
Maintainer: Tad Dallas <tad.a.dallas@gmail.com>
Diff between helminthR versions 1.0.9 dated 2021-08-16 and 1.0.10 dated 2022-12-08
DESCRIPTION | 12 ++++--- MD5 | 22 +++++++------- NEWS.md | 6 +++ R/cleanData.R | 2 - R/findHost.R | 4 +- R/findLocation.R | 4 +- R/findParasite.R | 3 + build/vignette.rds |binary inst/doc/helminthR_vignette.R | 23 +++++++-------- inst/doc/helminthR_vignette.Rmd | 9 +++-- inst/doc/helminthR_vignette.html | 59 +++++++++++++++++---------------------- vignettes/helminthR_vignette.Rmd | 9 +++-- 12 files changed, 82 insertions(+), 71 deletions(-)
Title: Global Adaptive Generative Adjustment Algorithm for Generalized
Linear Models
Description: Fits linear regression, logistic and multinomial regression models, Poisson regression, Cox model via Global Adaptive Generative Adjustment Algorithm.
For more detailed information, see Bin Wang, Xiaofei Wang and Jianhua Guo (2022) <arXiv:1911.00658>.
This paper provides the theoretical properties of Gaga linear model when the load matrix is orthogonal.
Further study is going on for the nonorthogonal cases and generalized linear models.
These works are in part supported by the National Natural Foundation of China (No.12171076).
Author: Bin Wang [aut, cre],
Xiaofei Wang [ctb],
Jianhua Guo [ths]
Maintainer: Bin Wang <eatingbeen@hotmail.com>
Diff between GAGAs versions 0.5.0 dated 2022-12-03 and 0.5.1 dated 2022-12-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/LM_GAGA.R | 2 +- man/LM_GAGA.Rd | 4 ++-- src/LM_GAGA.cpp | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: Linear and Nonlinear Autoregressive Distributed Lag Models:
General-to-Specific Approach
Description: Estimate the linear and nonlinear autoregressive distributed lag (ARDL & NARDL) models and the corresponding error correction models, and test for
longrun and short-run asymmetric. The general-to-specific approach is also available in estimating the ARDL and NARDL models.
The Pesaran, Shin & Smith (2001) (<doi:10.1002/jae.616>) bounds test for level relationships is also provided.
The 'ardl.nardl' package also performs short-run and longrun symmetric restrictions available at
Shin et al. (2014) <doi:10.1007/978-1-4899-8008-3_9> and their corresponding tests.
Author: Eric I. Otoakhia [aut, cre]
Maintainer: Eric I. Otoakhia <otoakhiai@gmail.com>
Diff between ardl.nardl versions 1.2.0 dated 2022-11-28 and 1.2.1 dated 2022-12-08
DESCRIPTION | 20 +++++++++++--------- MD5 | 8 ++++---- NEWS | 2 ++ man/auto_case_ardl.Rd | 2 +- man/nardl_auto_case.Rd | 2 +- 5 files changed, 19 insertions(+), 15 deletions(-)
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2 [...truncated...]
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut],
Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spOccupancy versions 0.5.0 dated 2022-11-16 and 0.5.1 dated 2022-12-08
DESCRIPTION | 10 +++++----- MD5 | 34 +++++++++++++++++----------------- NEWS.md | 6 +++++- R/PGOcc.R | 18 +++++++++++++++--- R/lfJSDM.R | 7 ++++++- R/lfMsPGOcc.R | 15 ++++++++++++--- R/msPGOcc.R | 16 +++++++++++++--- R/sfJSDM.R | 7 ++++++- R/sfMsPGOcc.R | 15 ++++++++++++--- R/spMsPGOcc.R | 33 +++++++++++++++++++++++++++------ R/spPGOcc.R | 36 ++++++++++++++++++++++++++++-------- R/stPGOcc.R | 14 +++++++++++--- R/svcPGBinom.R | 7 ++++++- R/svcPGOcc.R | 15 ++++++++++++--- R/svcTPGBinom.R | 7 +++++-- R/svcTPGOcc.R | 14 +++++++++++--- R/tPGOcc.R | 12 ++++++++++-- man/tPGOcc.Rd | 4 ++-- 18 files changed, 203 insertions(+), 67 deletions(-)
Title: Read 'Bibtex' Files and Convert Between Bibliography Formats
Description: Read and write 'Bibtex' files. Convert between bibliography
formats, including 'Bibtex', 'Biblatex', 'PubMed', 'Endnote', and
'Bibentry'. Includes a port of the 'bibutils' utilities by Chris
Putnam <https://sourceforge.net/projects/bibutils/>. Supports all
bibliography formats and character encodings implemented in
'bibutils'.
Author: Georgi N. Boshnakov [aut, cre] ),
Chris Putman [aut] ,
Richard Mathar [ctb] ,
Johannes Wilm [ctb]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between rbibutils versions 2.2.10 dated 2022-11-15 and 2.2.11 dated 2022-12-08
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 7 ++++++- build/partial.rdb |binary src/adsout.c | 8 ++++---- src/bibcore.c | 13 +++++++------ src/bibentrydirectout.c | 6 +++--- src/bibentryout.c | 6 +++--- src/biblatexout.c | 5 +++-- src/bibtexout.c | 5 +++-- src/endin.c | 8 ++++---- src/str_conv.c | 4 ++-- 12 files changed, 49 insertions(+), 41 deletions(-)
Title: Analysis of Sleep Data
Description: Provides users functions for sleep data management and analysis such as European Data Format (EDF) to Morpheo Data Format (MDF) conversion: P.Bouchequet, D.Jin, G.Solelhac, M.Chennaoui, D.Leger (2018) <doi:10.1016/j.msom.2018.01.130> "Morpheo Data Format (MDF), un nouveau format de donnees simple, robuste et performant pour stocker et analyser les enregistrements de sommeil". Provides hypnogram statistics computing and visualisation functions from the American Academy of Sleep Medicine (AASM) manual "The AASM Manual for the Scoring of Sleep and Associated Events" <https://aasm.org/clinical-resources/scoring-manual/>.
Author: Paul Bouchequet <paul.bouchequet@frenchkpi.com>
Maintainer: Paul Bouchequet <paul.bouchequet@frenchkpi.com>
Diff between rsleep versions 1.0.4 dated 2021-11-28 and 1.0.5 dated 2022-12-08
DESCRIPTION | 10 MD5 | 23 + NEWS.md |only R/eeg.R | 370 ++++++++++++------------ R/events.R | 321 ++++++++++++++------- R/files.R | 536 ++++++++++++++++++++--------------- R/scoring.R |only README.md | 562 ++++++++++++++++++------------------- man/plot_hypnodensity.Rd |only man/read_events_sleepedfx.Rd |only man/read_stages_compumedics.Rd |only man/score_mice.Rd |only man/score_psg.Rd |only man/smooth_hypnogram.Rd |only man/smooth_liang2012.Rd |only man/train_batches.Rd |only man/write_batches_mice.Rd |only man/write_batches_psg.Rd |only man/write_hypnogram_compumedics.Rd |only 19 files changed, 1033 insertions(+), 789 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with Rscript to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis [aut, cre] ,
Allen Day [ctb] ,
Python Software Foundation [ctb] ,
Paul Newell [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.1.6 dated 2022-07-17 and 2.2.1 dated 2022-12-08
DESCRIPTION | 10 - MD5 | 14 +- NEWS.md | 23 +++ R/argparse.R | 42 ++++++- README.md | 2 build/vignette.rds |binary inst/doc/argparse.html | 246 ++++++++++++++++++++++++++++++++++++----- tests/testthat/test-argparse.R | 52 +++++++- 8 files changed, 336 insertions(+), 53 deletions(-)
Title: Experience Study Tools for Analytics and Communications
Description: Provides a data class of 'tbl_es' to help aid in the formation and
analyses of recurrent or novel experience studies. A 'tbl_es' has attributes
which identify the key variables used for calculating metrics under an
actuarial perspective. Common metrics (such as actual-to-expected analysis)
can be quickly generated in aggregate or according to different qualitative
factors. If multiple factors are of interest, grouped metrics can be
automatically computed for each factor individually as well as for all
possible combinations. All resulting output can then be formatted for
presentations or left unformatted for subsequent analyses. Ultimately, this
package aims to reduce time spent completing repetitive code therefore
increasing time for analysis and insight.
Author: Cody Buehler [aut, cre]
Maintainer: Cody Buehler <cb12991@me.com>
Diff between expstudy versions 1.0.2 dated 2022-08-24 and 1.0.3 dated 2022-12-08
DESCRIPTION | 8 MD5 | 8 NEWS.md | 4 man/add_metrics.Rd | 4 tests/testthat/test-dplyr.R | 446 ++++++++++++++++++++++---------------------- 5 files changed, 237 insertions(+), 233 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.4.2 dated 2022-10-16 and 1.4.3 dated 2022-12-08
ichimoku-1.4.2/ichimoku/R/sysdata.rda |only ichimoku-1.4.3/ichimoku/DESCRIPTION | 13 - ichimoku-1.4.3/ichimoku/MD5 | 65 +++--- ichimoku-1.4.3/ichimoku/NAMESPACE | 4 ichimoku-1.4.3/ichimoku/NEWS.md | 16 + ichimoku-1.4.3/ichimoku/R/archive.R | 59 ++--- ichimoku-1.4.3/ichimoku/R/data.R | 112 ++++++++++ ichimoku-1.4.3/ichimoku/R/ichimoku-package.R | 8 ichimoku-1.4.3/ichimoku/R/ichimoku.R | 54 ++--- ichimoku-1.4.3/ichimoku/R/iplot.R | 14 - ichimoku-1.4.3/ichimoku/R/methods.R | 30 +- ichimoku-1.4.3/ichimoku/R/mltools.R | 52 ++--- ichimoku-1.4.3/ichimoku/R/oanda.R | 174 +++++++++-------- ichimoku-1.4.3/ichimoku/R/plot.R | 25 +- ichimoku-1.4.3/ichimoku/R/strat.R | 12 - ichimoku-1.4.3/ichimoku/R/switch.R | 39 ++- ichimoku-1.4.3/ichimoku/R/utils.R | 21 -- ichimoku-1.4.3/ichimoku/README.md | 2 ichimoku-1.4.3/ichimoku/build/vignette.rds |binary ichimoku-1.4.3/ichimoku/inst/doc/reference.R | 4 ichimoku-1.4.3/ichimoku/inst/doc/reference.Rmd | 8 ichimoku-1.4.3/ichimoku/inst/doc/reference.html | 10 ichimoku-1.4.3/ichimoku/inst/doc/utilities.html | 8 ichimoku-1.4.3/ichimoku/inst/doc/xoanda.R | 25 -- ichimoku-1.4.3/ichimoku/inst/doc/xoanda.Rmd | 27 -- ichimoku-1.4.3/ichimoku/inst/doc/xoanda.html | 27 -- ichimoku-1.4.3/ichimoku/man/mlgrid.Rd | 13 + ichimoku-1.4.3/ichimoku/man/oanda_stream.Rd | 6 ichimoku-1.4.3/ichimoku/src/shikokuchuo.c | 27 -- ichimoku-1.4.3/ichimoku/tests/testthat/test-ichimoku.R | 26 +- ichimoku-1.4.3/ichimoku/tests/testthat/test-mltools.R | 9 ichimoku-1.4.3/ichimoku/tests/testthat/test-utils.R | 2 ichimoku-1.4.3/ichimoku/vignettes/reference.Rmd | 8 ichimoku-1.4.3/ichimoku/vignettes/xoanda.Rmd | 27 -- 34 files changed, 517 insertions(+), 410 deletions(-)
Title: Bayesian Inference for Neyman-Scott Point Processes
Description: The Bayesian MCMC estimation of parameters for Thomas-type cluster
point process with various inhomogeneities. It allows for inhomogeneity in
(i) distribution of parent points, (ii) mean number of points in a cluster,
(iii) cluster spread. The package also allows for the Bayesian MCMC
algorithm for the homogeneous generalized Thomas process. The cluster size
is allowed to have a variance that is greater or less than the expected
value (cluster sizes are over or under dispersed). Details are described in
Dvořák, Remeš, Beránek & Mrkvička (2022) <arXiv: 10.48550/arXiv.2205.07946>.
Author: Mrkvicka Tomas [aut],
Dvorak Jiri [aut],
Beranek Ladislav [aut],
Remes Radim [aut, cre]
Maintainer: Remes Radim <inrem@jcu.cz>
Diff between binspp versions 0.1.24 dated 2022-10-08 and 0.1.26 dated 2022-12-08
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NAMESPACE | 2 +- R/binspp-package.R | 2 +- R/binspp_auxiliary.R | 12 ++++++------ man/estintp.Rd | 2 +- man/first_step.Rd | 4 ++-- man/print_outputs.Rd | 2 +- 8 files changed, 24 insertions(+), 24 deletions(-)
Title: A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
Description: The 'shiny' application Wallace is a modular platform for
reproducible modeling of species niches and distributions. Wallace
guides users through a complete analysis, from the acquisition of species
occurrence and environmental data to visualizing model predictions on an
interactive map, thus bundling complex workflows into a single,
streamlined interface. An extensive vignette, which guides users through
most package functionality can be found on the package's GitHub Pages
website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.
Author: Jamie M. Kass [aut],
Gonzalo E. Pinilla-Buitrago [aut, cre],
Andrea Paz [aut],
Bethany A. Johnson [aut],
Valentina Grisales-Betancur [aut],
Dean Attali [aut],
Matthew E. Aiello-Lammens [aut],
Cory Merow [aut],
Mary E. Blair [aut],
Robert P. Anderson [...truncated...]
Maintainer: Gonzalo E. Pinilla-Buitrago <gpinillabuitrago@gradcenter.cuny.edu>
Diff between wallace versions 1.1.3 dated 2022-03-09 and 2.0.0 dated 2022-12-08
wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp1.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp1_dbOccs.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp1_userOccs.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp2.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp2_removeByID.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp2_selectOccsOnMap.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp2_spatialThin.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp3.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp3_userEnvs.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp3_worldclim.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp4.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp4_backg.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp4_userBg.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp5.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp5_nonspatial.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp5_spatial.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp6.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp6_bioclim.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp6_maxent.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp7.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp7_bcPlots.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp7_map.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp7_mxEvalPlots.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp7_respCurves.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp8.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp8_mess.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp8_pjArea.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/gtext_comp8_pjTime.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/text_intro.Rmd |only wallace-1.1.3/wallace/inst/shiny/Rmd/text_sessionCode.Rmd |only 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wallace-2.0.0/wallace/man/part_partitionOccs.Rd |only wallace-2.0.0/wallace/man/penvs_bgExtent.Rd |only wallace-2.0.0/wallace/man/penvs_bgMask.Rd |only wallace-2.0.0/wallace/man/penvs_bgSample.Rd |only wallace-2.0.0/wallace/man/penvs_drawBgExtent.Rd |only wallace-2.0.0/wallace/man/penvs_userBgExtent.Rd |only wallace-2.0.0/wallace/man/poccs_removeByID.Rd |only wallace-2.0.0/wallace/man/poccs_selectOccs.Rd |only wallace-2.0.0/wallace/man/poccs_thinOccs.Rd |only wallace-2.0.0/wallace/man/polyZoom.Rd |only wallace-2.0.0/wallace/man/popUpContent.Rd |only wallace-2.0.0/wallace/man/predictMaxnet.Rd |only wallace-2.0.0/wallace/man/printVecAsis.Rd |only wallace-2.0.0/wallace/man/register_module.Rd |only wallace-2.0.0/wallace/man/remEnvsValsNA.Rd |only wallace-2.0.0/wallace/man/reverseLabel.Rd |only wallace-2.0.0/wallace/man/run_wallace.Rd | 20 wallace-2.0.0/wallace/man/smartProgress.Rd |only wallace-2.0.0/wallace/man/spName.Rd |only wallace-2.0.0/wallace/man/spurious.Rd |only wallace-2.0.0/wallace/man/vis_bioclimPlot.Rd |only wallace-2.0.0/wallace/man/wallace-package.Rd | 55 wallace-2.0.0/wallace/man/writeLog.Rd |only wallace-2.0.0/wallace/man/write_csv_robust.Rd |only wallace-2.0.0/wallace/man/xfer_area.Rd |only wallace-2.0.0/wallace/man/xfer_draw.Rd |only wallace-2.0.0/wallace/man/xfer_mess.Rd |only wallace-2.0.0/wallace/man/xfer_time.Rd |only wallace-2.0.0/wallace/man/xfer_userEnvs.Rd |only wallace-2.0.0/wallace/man/xfer_userExtent.Rd |only wallace-2.0.0/wallace/man/zoom2Occs.Rd |only wallace-2.0.0/wallace/tests |only 311 files changed, 2519 insertions(+), 1542 deletions(-)
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.7.8 dated 2022-08-16 and 1.7.9 dated 2022-12-08
DESCRIPTION | 8 - LICENSE | 4 MD5 | 38 +++--- NEWS.md | 13 ++ R/connection_viewer.R | 2 R/data_interface.R | 4 R/dplyr_spark.R | 6 - R/dplyr_verbs.R | 4 R/install_spark_windows.R | 2 R/livy_install.R | 4 R/ml_classification_naive_bayes.R | 2 R/ml_feature_r_formula.R | 2 R/spark_compile.R | 6 - R/tidyr_pivot_wider.R | 31 +++-- README.md | 220 ++++++++++++++++++++------------------ inst/extdata/versions.json | 106 +++++++++++------- man/ft_r_formula.Rd | 2 man/ml_naive_bayes.Rd | 2 man/spark_read_json.Rd | 2 man/spark_write_json.Rd | 2 20 files changed, 259 insertions(+), 201 deletions(-)
Title: Analysis of Single-Cell Chromatin Data
Description: A framework for the analysis and exploration of single-cell chromatin data.
The 'Signac' package contains functions for quantifying single-cell chromatin data,
computing per-cell quality control metrics, dimension reduction
and normalization, visualization, and DNA sequence motif analysis.
Reference: Stuart et al. (2021) <doi:10.1038/s41592-021-01282-5>.
Author: Tim Stuart [aut, cre] ,
Avi Srivastava [aut] ,
Paul Hoffman [ctb] ,
Rahul Satija [ctb]
Maintainer: Tim Stuart <tstuart@nygenome.org>
Diff between Signac versions 1.8.0 dated 2022-09-21 and 1.9.0 dated 2022-12-08
DESCRIPTION | 10 ++-- MD5 | 38 +++++++++------- NEWS.md | 14 ++++++ R/dimension_reduction.R | 5 +- R/footprinting.R | 4 + R/motifs.R | 4 + R/objects.R | 14 ++++-- R/utilities.R | 3 + R/visualization.R | 102 ++++++++++++++++++++++++++++++++++---------- README.md | 14 +++++- build/partial.rdb |binary man/ChromatinAssay-class.Rd | 10 +++- man/CoveragePlot.Rd | 5 ++ man/MotifPlot.Rd | 2 man/PlotFootprint.Rd | 5 ++ man/RunSVD.Rd | 4 + man/Signac-package.Rd | 2 man/figures |only 18 files changed, 185 insertions(+), 51 deletions(-)
Title: Matrix Functions for Teaching and Learning Linear Algebra and
Multivariate Statistics
Description: A collection of matrix functions for teaching and learning matrix
linear algebra as used in multivariate statistical methods. These functions are
mainly for tutorial purposes in learning matrix algebra ideas using R. In some
cases, functions are provided for concepts available elsewhere in R, but where
the function call or name is not obvious. In other cases, functions are provided
to show or demonstrate an algorithm. In addition, a collection of functions are
provided for drawing vector diagrams in 2D and 3D.
Author: Michael Friendly [aut, cre] ,
John Fox [aut],
Phil Chalmers [aut],
Georges Monette [ctb],
Gaston Sanchez [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between matlib versions 0.9.5 dated 2021-08-21 and 0.9.6 dated 2022-12-08
matlib-0.9.5/matlib/R/matlib.R |only matlib-0.9.5/matlib/man/matlib.Rd |only matlib-0.9.6/matlib/DESCRIPTION | 13 matlib-0.9.6/matlib/MD5 | 68 matlib-0.9.6/matlib/NEWS.md | 6 matlib-0.9.6/matlib/R/Solve.R | 5 matlib-0.9.6/matlib/R/determinants.R | 13 matlib-0.9.6/matlib/R/gaussian-elimination.R | 14 matlib-0.9.6/matlib/R/matlib-package.R |only matlib-0.9.6/matlib/R/matrix2latex.R | 9 matlib-0.9.6/matlib/R/printMatEqn.R | 6 matlib-0.9.6/matlib/R/showEqn.R | 14 matlib-0.9.6/matlib/R/swp.R | 2 matlib-0.9.6/matlib/R/util.R | 22 matlib-0.9.6/matlib/build/vignette.rds |binary matlib-0.9.6/matlib/inst/WORDLIST | 10 matlib-0.9.6/matlib/inst/doc/data-beta.html | 9168 ++++++++++++++++++++- matlib-0.9.6/matlib/inst/doc/det-ex1.html | 374 matlib-0.9.6/matlib/inst/doc/det-ex2.html | 359 matlib-0.9.6/matlib/inst/doc/eigen-ex1.html | 370 matlib-0.9.6/matlib/inst/doc/eigen-ex2.html | 364 matlib-0.9.6/matlib/inst/doc/ginv.html | 367 matlib-0.9.6/matlib/inst/doc/gramreg.html | 436 matlib-0.9.6/matlib/inst/doc/inv-ex1.html | 423 matlib-0.9.6/matlib/inst/doc/inv-ex2.html | 361 matlib-0.9.6/matlib/inst/doc/linear-equations.html | 9100 ++++++++++++++++++++ matlib-0.9.6/matlib/man/Det.Rd | 5 matlib-0.9.6/matlib/man/Ginv.Rd | 5 matlib-0.9.6/matlib/man/Solve.Rd | 5 matlib-0.9.6/matlib/man/gaussianElimination.Rd | 5 matlib-0.9.6/matlib/man/matlib-package.Rd |only matlib-0.9.6/matlib/man/matrix2latex.Rd | 73 matlib-0.9.6/matlib/man/printMatEqn.Rd | 5 matlib-0.9.6/matlib/man/printMatrix.Rd | 5 matlib-0.9.6/matlib/man/regvec3d.Rd | 6 matlib-0.9.6/matlib/man/showEqn.Rd | 5 matlib-0.9.6/matlib/man/swp.Rd | 2 37 files changed, 20663 insertions(+), 957 deletions(-)
Title: Groupwise Statistics, LSmeans, Linear Estimates, Utilities
Description: Utility package containing:
1) Facilities for working with grouped data: 'do' something to data
stratified 'by' some variables.
2) LSmeans (least-squares means), general linear estimates.
3) Restrict functions to a smaller domain.
4) Miscellaneous other utilities.
Author: Soeren Hoejsgaard <sorenh@math.aau.dk> and Ulrich Halekoh
<uhalekoh@health.sdu.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>
Diff between doBy versions 4.6.14 dated 2022-10-17 and 4.6.15 dated 2022-12-08
doBy-4.6.14/doBy/R/NAMESPACE.R |only doBy-4.6.14/doBy/R/restrict_env.R |only doBy-4.6.14/doBy/data/crimeRate.txt.gz |only doBy-4.6.14/doBy/data/haldCement.txt.gz |only doBy-4.6.14/doBy/data/potatoes.txt.gz |only doBy-4.6.14/doBy/inst/doc/restrict_fun.R |only doBy-4.6.14/doBy/inst/doc/restrict_fun.Rnw |only doBy-4.6.14/doBy/inst/doc/restrict_fun.pdf |only doBy-4.6.14/doBy/man/budworm.Rd |only doBy-4.6.14/doBy/man/restrict_fun.Rd |only doBy-4.6.14/doBy/vignettes/check.R |only doBy-4.6.14/doBy/vignettes/linest_lsmeans-concordance.tex |only doBy-4.6.14/doBy/vignettes/restrict_fun-concordance.tex |only doBy-4.6.14/doBy/vignettes/restrict_fun.Rnw |only doBy-4.6.15/doBy/DESCRIPTION | 9 doBy-4.6.15/doBy/MD5 | 171 ++++++-------- doBy-4.6.15/doBy/NAMESPACE | 8 doBy-4.6.15/doBy/NEWS.md | 42 +-- doBy-4.6.15/doBy/R/DATA-cad.R | 13 - doBy-4.6.15/doBy/R/DATA-doby.R | 108 +------- doBy-4.6.15/doBy/R/NAMESPACE-doby.R |only doBy-4.6.15/doBy/R/by-lapplyBy.R | 4 doBy-4.6.15/doBy/R/by-lmBy.R | 6 doBy-4.6.15/doBy/R/by-scaleBy.R | 2 doBy-4.6.15/doBy/R/by-splitBy.R | 2 doBy-4.6.15/doBy/R/by-summaryBy.R | 2 doBy-4.6.15/doBy/R/data-budworm.R |only doBy-4.6.15/doBy/R/descStat.R | 2 doBy-4.6.15/doBy/R/esticon.R | 8 doBy-4.6.15/doBy/R/expr_to_fun.R | 117 ++++++++- doBy-4.6.15/doBy/R/linest_LSmeans.R | 3 doBy-4.6.15/doBy/R/linest_compute.R | 2 doBy-4.6.15/doBy/R/recodeVar.R | 4 doBy-4.6.15/doBy/R/recover_pca_data.R | 4 doBy-4.6.15/doBy/R/renameCol.R | 14 - doBy-4.6.15/doBy/R/section_fun.R |only doBy-4.6.15/doBy/R/split_byrow_bycol.R | 2 doBy-4.6.15/doBy/R/taylor.R | 27 +- doBy-4.6.15/doBy/R/which.maxn.R | 2 doBy-4.6.15/doBy/build/vignette.rds |binary doBy-4.6.15/doBy/data/crimeRate.txt |only doBy-4.6.15/doBy/data/haldCement.txt |only doBy-4.6.15/doBy/data/potatoes.txt |only doBy-4.6.15/doBy/inst/WORDLIST |only doBy-4.6.15/doBy/inst/doc/doby.Rnw | 2 doBy-4.6.15/doBy/inst/doc/doby.pdf |binary doBy-4.6.15/doBy/inst/doc/linest_lsmeans.Rnw | 3 doBy-4.6.15/doBy/inst/doc/linest_lsmeans.pdf |binary doBy-4.6.15/doBy/inst/doc/section_fun.R |only doBy-4.6.15/doBy/inst/doc/section_fun.Rnw |only doBy-4.6.15/doBy/inst/doc/section_fun.pdf |only doBy-4.6.15/doBy/man/NIRmilk.Rd | 10 doBy-4.6.15/doBy/man/beets.Rd | 14 - doBy-4.6.15/doBy/man/breastcancer.Rd | 14 - doBy-4.6.15/doBy/man/by-lapply.Rd | 10 doBy-4.6.15/doBy/man/by-lmby.Rd | 10 doBy-4.6.15/doBy/man/by-order.Rd | 12 doBy-4.6.15/doBy/man/by-sample.Rd | 12 doBy-4.6.15/doBy/man/by-split.Rd | 10 doBy-4.6.15/doBy/man/by-subset.Rd | 6 doBy-4.6.15/doBy/man/by-summary.Rd | 18 - doBy-4.6.15/doBy/man/by-transform.Rd | 10 doBy-4.6.15/doBy/man/by_scale.Rd | 12 doBy-4.6.15/doBy/man/carcass.Rd | 46 +-- doBy-4.6.15/doBy/man/codstom.Rd | 60 ++-- doBy-4.6.15/doBy/man/cropyield.Rd | 20 - doBy-4.6.15/doBy/man/data-budworm.Rd |only doBy-4.6.15/doBy/man/data-personality.Rd | 12 doBy-4.6.15/doBy/man/data_cad.Rd | 75 +++--- doBy-4.6.15/doBy/man/descStat.Rd | 4 doBy-4.6.15/doBy/man/dietox.Rd | 14 - doBy-4.6.15/doBy/man/esticon.Rd | 24 - doBy-4.6.15/doBy/man/expr_to_fun.Rd | 25 +- doBy-4.6.15/doBy/man/fatacid.Rd | 10 doBy-4.6.15/doBy/man/fev.Rd | 12 doBy-4.6.15/doBy/man/firstlastobs.Rd | 2 doBy-4.6.15/doBy/man/haldCement.Rd | 20 - doBy-4.6.15/doBy/man/interaction-plot.Rd | 8 doBy-4.6.15/doBy/man/is-estimable.Rd | 14 - doBy-4.6.15/doBy/man/linest.Rd | 6 doBy-4.6.15/doBy/man/ls-means.Rd | 15 - doBy-4.6.15/doBy/man/mb_summary.Rd | 6 doBy-4.6.15/doBy/man/milkman.Rd | 32 +- doBy-4.6.15/doBy/man/null-basis.Rd | 6 doBy-4.6.15/doBy/man/parseGroupFormula.Rd | 6 doBy-4.6.15/doBy/man/potatoes.Rd | 14 - doBy-4.6.15/doBy/man/recodeVar.Rd | 8 doBy-4.6.15/doBy/man/recover_pca_data.Rd | 4 doBy-4.6.15/doBy/man/renameCol.Rd | 13 - doBy-4.6.15/doBy/man/scale2.Rd | 2 doBy-4.6.15/doBy/man/section_fun.Rd |only doBy-4.6.15/doBy/man/split_byrow_bycol.Rd | 2 doBy-4.6.15/doBy/man/sub_seq.Rd | 14 - doBy-4.6.15/doBy/man/taylor.Rd | 1 doBy-4.6.15/doBy/man/timeSinceEvent.Rd | 10 doBy-4.6.15/doBy/man/which.maxn.Rd | 4 doBy-4.6.15/doBy/tests/testthat/test-restrict.R | 14 - doBy-4.6.15/doBy/vignettes/doby.Rnw | 2 doBy-4.6.15/doBy/vignettes/linest_lsmeans.Rnw | 3 doBy-4.6.15/doBy/vignettes/section_fun.Rnw |only 100 files changed, 629 insertions(+), 574 deletions(-)
Title: Modelling Interactions in High-Dimensional Data with
Backtracking
Description: Implementation of the algorithm introduced in Shah, R. D.
(2016) <https://www.jmlr.org/papers/volume17/13-515/13-515.pdf>.
Data with thousands of predictors can be handled. The algorithm
performs sequential Lasso fits on design matrices containing
increasing sets of candidate interactions. Previous fits are used to greatly
speed up subsequent fits, so the algorithm is very efficient.
Author: Rajen Shah [aut, cre]
Maintainer: Rajen Shah <r.shah@statslab.cam.ac.uk>
Diff between LassoBacktracking versions 1.0 dated 2022-10-20 and 1.1 dated 2022-12-08
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/LassoBT.R | 4 ++-- R/RcppExports.R | 26 +++++++++++++------------- 4 files changed, 22 insertions(+), 22 deletions(-)
More information about LassoBacktracking at CRAN
Permanent link
Title: Specification of Generalised Linear Mixed Models
Description: Specification of generalised linear mixed models using the 'R6' object-orientated class system. The package provides classes 'Covariance', 'MeanFunction' and 'Model', which allow for flexible specification of generalised linear mixed models, as well as functionality to produce relevant matrices, values, and analyses.
See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a detailed manual.
Author: Sam Watson [aut, cre],
Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between glmmrBase versions 0.2.2 dated 2022-12-03 and 0.2.3 dated 2022-12-08
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- R/R6Model.R | 2 +- README.md |only build/partial.rdb |binary inst/include/glmmr/DMatrix.h | 6 ------ 6 files changed, 10 insertions(+), 15 deletions(-)
Title: Variational Techniques in Epidemiology
Description: Using variational techniques we address some epidemiological
problems as the incidence curve decomposition by inverting the renewal
equation as described in Alvarez et al. (2021) <doi:10.1073/pnas.2105112118>
and Alvarez et al. (2022) <doi:10.3390/biology11040540> or the estimation of
the functional relationship between epidemiological indicators. We also
propose a learning method for the short time forecast of the trend
incidence curve as described in
Morel et al. (2022) <doi:10.1101/2022.11.05.22281904>.
Author: Luis Alvarez [aut, cre] ,
Jean-David Morel [ctb] ,
Jean-Michel Morel [ctb]
Maintainer: Luis Alvarez <lalvarez@ulpgc.es>
Diff between EpiInvert versions 0.2.1 dated 2022-10-16 and 0.3.0 dated 2022-12-08
EpiInvert-0.2.1/EpiInvert/tests/testthat/test-USA_parametric_si.R |only EpiInvert-0.3.0/EpiInvert/DESCRIPTION | 29 +- EpiInvert-0.3.0/EpiInvert/MD5 | 51 ++- EpiInvert-0.3.0/EpiInvert/NAMESPACE | 5 EpiInvert-0.3.0/EpiInvert/NEWS.md | 4 EpiInvert-0.3.0/EpiInvert/R/EpiIndicators.R |only EpiInvert-0.3.0/EpiInvert/R/RcppExports.R | 12 EpiInvert-0.3.0/EpiInvert/R/data.R | 38 ++ EpiInvert-0.3.0/EpiInvert/R/plot.R | 76 +++++ EpiInvert-0.3.0/EpiInvert/R/select_params.R | 9 EpiInvert-0.3.0/EpiInvert/README.md | 55 +--- EpiInvert-0.3.0/EpiInvert/data/owid.rda |only EpiInvert-0.3.0/EpiInvert/data/restored_incidence_database.rda |binary EpiInvert-0.3.0/EpiInvert/man/EpiIndicators.Rd |only EpiInvert-0.3.0/EpiInvert/man/EpiIndicators_params.Rd |only EpiInvert-0.3.0/EpiInvert/man/EpiIndicators_plot.Rd |only EpiInvert-0.3.0/EpiInvert/man/EpiInvertForecast.Rd | 4 EpiInvert-0.3.0/EpiInvert/man/EpiInvertForecast_plot.Rd | 4 EpiInvert-0.3.0/EpiInvert/man/EpiInvert_plot.Rd | 4 EpiInvert-0.3.0/EpiInvert/man/apply_delay.Rd |only EpiInvert-0.3.0/EpiInvert/man/joint_indicators_by_date.Rd |only EpiInvert-0.3.0/EpiInvert/man/owid.Rd |only EpiInvert-0.3.0/EpiInvert/man/restored_incidence_database.Rd | 4 EpiInvert-0.3.0/EpiInvert/src/EpiIndicators.cpp |only EpiInvert-0.3.0/EpiInvert/src/EpiIndicators.h |only EpiInvert-0.3.0/EpiInvert/src/EpiIndicators_main.cpp |only EpiInvert-0.3.0/EpiInvert/src/EpiInvertCore_q_variable.cpp | 39 ++ EpiInvert-0.3.0/EpiInvert/src/EpiInvertCore_q_variable.h | 6 EpiInvert-0.3.0/EpiInvert/src/EpiInvert_main.cpp | 21 + EpiInvert-0.3.0/EpiInvert/src/RcppExports.cpp | 50 +++ EpiInvert-0.3.0/EpiInvert/src/utilities.cpp | 136 +++++++++- EpiInvert-0.3.0/EpiInvert/src/utilities.h | 11 EpiInvert-0.3.0/EpiInvert/tests/testthat/test-EpiInvert.R |only 33 files changed, 456 insertions(+), 102 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.2.5 dated 2020-06-30 and 0.3.0 dated 2022-12-08
rvg-0.2.5/rvg/R/rcpp.R |only rvg-0.2.5/rvg/build |only rvg-0.2.5/rvg/cleanup |only rvg-0.2.5/rvg/inst/doc |only rvg-0.2.5/rvg/man/rvg-defunct.Rd |only rvg-0.2.5/rvg/src/fonts.cpp |only rvg-0.2.5/rvg/src/fonts.h |only rvg-0.2.5/rvg/src/nv_pr.cpp |only rvg-0.2.5/rvg/src/nv_pr.h |only rvg-0.2.5/rvg/src/utils.cpp |only rvg-0.2.5/rvg/src/utils.h |only rvg-0.2.5/rvg/vignettes |only rvg-0.3.0/rvg/DESCRIPTION | 24 - rvg-0.3.0/rvg/MD5 | 72 ++--- rvg-0.3.0/rvg/NAMESPACE | 1 rvg-0.3.0/rvg/NEWS.md | 11 rvg-0.3.0/rvg/R/defunct.R | 16 - rvg-0.3.0/rvg/R/dml_pptx.R | 23 - rvg-0.3.0/rvg/R/dml_xlsx.R | 21 - rvg-0.3.0/rvg/R/fonts.R | 9 rvg-0.3.0/rvg/R/ph_with_vg.R | 56 ++-- rvg-0.3.0/rvg/R/xl_add_vg.R | 39 +-- rvg-0.3.0/rvg/README.md | 16 - rvg-0.3.0/rvg/inst/logo.svg |only rvg-0.3.0/rvg/man/body_add_vg.Rd |only rvg-0.3.0/rvg/man/dml.Rd | 14 + rvg-0.3.0/rvg/man/dml_pptx.Rd | 4 rvg-0.3.0/rvg/man/dml_xlsx.Rd | 4 rvg-0.3.0/rvg/man/ph_with.dml.Rd | 2 rvg-0.3.0/rvg/man/xl_add_vg.Rd | 6 rvg-0.3.0/rvg/src/Makevars |only rvg-0.3.0/rvg/src/Makevars.ucrt |only rvg-0.3.0/rvg/src/Makevars.win |only rvg-0.3.0/rvg/src/RcppExports.cpp | 5 rvg-0.3.0/rvg/src/a_color.cpp | 2 rvg-0.3.0/rvg/src/clipper.h | 1 rvg-0.3.0/rvg/src/line_style.h | 1 rvg-0.3.0/rvg/src/ooxml_dev.h |only rvg-0.3.0/rvg/src/pptx.cpp | 489 -------------------------------------- rvg-0.3.0/rvg/src/raster.cpp |only rvg-0.3.0/rvg/src/raster.h |only rvg-0.3.0/rvg/src/shapes.cpp |only rvg-0.3.0/rvg/src/shapes.h |only rvg-0.3.0/rvg/src/text.cpp |only rvg-0.3.0/rvg/src/text.h |only rvg-0.3.0/rvg/src/write_nv_pr.cpp |only rvg-0.3.0/rvg/src/write_nv_pr.h |only rvg-0.3.0/rvg/src/xfrm.h | 5 rvg-0.3.0/rvg/src/xlsx.cpp | 455 ----------------------------------- rvg-0.3.0/rvg/tools |only 50 files changed, 193 insertions(+), 1083 deletions(-)
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Title: Mass Spectrometry Tools
Description: Common mass spectrometry tools described in John Roboz (2013) <doi:10.1201/b15436>. It allows checking element
isotopes, calculating (isotope labelled) exact monoisitopic mass, m/z values and mass accuracy, and inspecting possible contaminant mass peaks,
examining possible adducts in electrospray ionization (ESI) and matrix-assisted laser desorption ionization (MALDI)
ion sources.
Author: Yonghui Dong
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>
Diff between MSbox versions 1.4.6 dated 2022-02-24 and 1.4.8 dated 2022-12-08
MSbox-1.4.6/MSbox/R/doNormalization.R |only MSbox-1.4.6/MSbox/R/viewPCA.R |only MSbox-1.4.6/MSbox/R/viewTIC.R |only MSbox-1.4.6/MSbox/R/viewVolcano.R |only MSbox-1.4.6/MSbox/man/doNormalization.Rd |only MSbox-1.4.6/MSbox/man/viewPCA.Rd |only MSbox-1.4.6/MSbox/man/viewTIC.Rd |only MSbox-1.4.6/MSbox/man/viewVolcano.Rd |only MSbox-1.4.8/MSbox/DESCRIPTION | 11 +- MSbox-1.4.8/MSbox/MD5 | 20 +--- MSbox-1.4.8/MSbox/NAMESPACE | 22 ----- MSbox-1.4.8/MSbox/R/doStat.R | 46 +++++----- MSbox-1.4.8/MSbox/R/getCV.R | 1 MSbox-1.4.8/MSbox/R/getFC.R | 2 MSbox-1.4.8/MSbox/R/getP.R | 136 ++++++++++++++++--------------- 15 files changed, 110 insertions(+), 128 deletions(-)
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More information about transform.hazards at CRAN
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Title: Quantitative Analysis of Textual Data
Description: A fast, flexible, and comprehensive framework for
quantitative text analysis in R. Provides functionality for corpus management,
creating and manipulating tokens and n-grams, exploring keywords in context,
forming and manipulating sparse matrices
of documents by features and feature co-occurrences, analyzing keywords, computing feature similarities and
distances, applying content dictionaries, applying supervised and unsupervised machine learning,
visually representing text and text analyses, and more.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Paul Nulty [aut] ,
Adam Obeng [aut] ,
Stefan Mueller [aut] ,
Akitaka Matsuo [aut] ,
William Lowe [aut] ,
Christian Mueller [ctb],
European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda versions 3.2.3 dated 2022-08-29 and 3.2.4 dated 2022-12-08
DESCRIPTION | 10 +- MD5 | 36 ++++----- R/data-documentation.R | 4 - R/dfm-print.R | 4 - R/dfm_weight.R | 4 - R/dictionaries.R | 2 R/message.R | 4 - README.md | 62 +++++++--------- build/partial.rdb |binary build/vignette.rds |binary data/data_dictionary_LSD2015.rda |binary inst/doc/quickstart.html | 113 ++++++++++++++---------------- man/data_dictionary_LSD2015.Rd | 4 - man/dictionary.Rd | 2 man/msg.Rd | 2 tests/cheatsheet/quanteda-cheatsheet.pdf |binary tests/cheatsheet/quanteda-cheatsheet.pptx |binary tests/testthat/test-dfm_weight.R | 1 tests/testthat/test-tokens.R | 1 19 files changed, 125 insertions(+), 124 deletions(-)
Title: Rmetrics - Chronological and Calendar Objects
Description: The 'timeDate' class fulfils the conventions of the ISO 8601
standard as well as of the ANSI C and POSIX standards. Beyond
these standards it provides the "Financial Center" concept
which allows to handle data records collected in different time
zones and mix them up to have always the proper time stamps with
respect to your personal financial center, or alternatively to the GMT
reference time. It can thus also handle time stamps from historical
data records from the same time zone, even if the financial
centers changed day light saving times at different calendar
dates.
Author: Diethelm Wuertz [aut] ,
Tobias Setz [aut],
Yohan Chalabi [aut],
Martin Maechler [ctb] ,
Joe W. Byers [ctb],
Georgi N. Boshnakov [cre, aut]
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between timeDate versions 4021.106 dated 2022-09-30 and 4021.107 dated 2022-12-08
DESCRIPTION | 13 MD5 | 156 NAMESPACE | 9 NEWS.md | 56 R/holiday-Dates.R | 37 R/holiday-LONDON.R | 50 R/holiday-Listing.R | 5 R/sysdata.rda |binary R/timeDate-DaylightSavingTime.R |47392 +++++++++++++----------------- R/timeDate-Sequence.R | 22 R/timeDate-generateDST.R | 21 R/timeDate-rulesFinCenter.R | 12 R/timeDate.R | 173 README.md |only inst/_pkgdown.yml | 9 inst/pkgdown.yml |only inst/unitTests/runit.DaylightSavingTime.R | 113 inst/unitTests/runit.HolidayCalendars.R | 65 inst/unitTests/runit.seq.R | 21 man/00timeDate-package.Rd | 106 man/base-c.Rd | 17 man/base-diff.Rd | 12 man/base-difftimeDate.Rd | 21 man/base-format.Rd | 35 man/base-length.Rd | 24 man/base-rep.Rd | 7 man/base-rev.Rd | 30 man/base-round.Rd | 46 man/base-sample.Rd | 16 man/base-sort.Rd | 20 man/base-start.Rd | 54 man/base-subset.Rd | 16 man/base-summary.Rd | 36 man/base-unique.Rd | 11 man/calendar-Easter.Rd | 25 man/calendar-align.Rd | 28 man/calendar-dayOfWeek.Rd | 31 man/calendar-dayOfYear.Rd | 28 man/calendar-endpoints.Rd | 52 man/calendar-firstDay.Rd | 55 man/calendar-isBizday.Rd | 24 man/calendar-isRegular.Rd | 70 man/calendar-isWeekday.Rd | 18 man/calendar-julian.Rd | 63 man/calendar-nDay.Rd | 31 man/calendar-onOrAfter.Rd | 71 man/calendar-periods.Rd | 55 man/class-timeDate.Rd | 150 man/graphics-plot.Rd | 108 man/holiday-Dates.Rd | 61 man/holiday-LONDON.Rd | 34 man/holiday-Listing.Rd | 26 man/holiday-NERC.Rd | 33 man/holiday-NYSE.Rd | 9 man/holiday-TSX.Rd | 24 man/holiday-ZURICH.Rd | 33 man/holiday.Rd | 22 man/methods-as.Rd | 15 man/methods-mathOps.Rd | 69 man/methods-names.Rd | 15 man/methods-show.Rd | 26 man/options-RmetricsOptions.Rd | 7 man/options-currentYear.Rd | 16 man/options-myFinCenter.Rd | 24 man/options-myUnits.Rd | 19 man/stats-blockStart.Rd | 35 man/stats-kurtosis.Rd | 56 man/stats-na-fail.Rd | 10 man/stats-skewness.Rd | 62 man/stats-window.Rd | 47 man/timeDate-Calendar.Rd | 55 man/timeDate-DaylightSavingTime.Rd | 3 man/timeDate-Sequence.Rd | 14 man/timeDate-Sys.timeDate.Rd | 43 man/timeDate-finCenter.Rd | 4 man/timeDate-listFinCenter.Rd | 12 man/timeDate-midnightStandard.Rd | 28 man/timeDate-rulesFinCenter.Rd | 27 man/timeDate-whichFormat.Rd | 33 man/timeDate.Rd | 84 80 files changed, 23656 insertions(+), 26704 deletions(-)
Title: Support for Parallel Computation, Logging, and Function
Automation
Description: Support for parallel computation with progress bar, and option to stop or proceed on errors. Also provides logging to console and disk,
and the logging persists in the parallel threads. Additional functions support function call automation with delayed execution (e.g. for executing functions in
parallel).
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between ParallelLogger versions 3.0.1 dated 2022-06-07 and 3.1.0 dated 2022-12-08
DESCRIPTION | 10 +++---- MD5 | 20 +++++++-------- NEWS.md | 16 ++++++++++++ R/Args.R | 36 +++++++++++++-------------- R/Cluster.R | 39 ++++++++++++++++++++++------- R/Logging.R | 12 ++++++--- R/ParallelLogger.R | 2 + build/vignette.rds |binary inst/doc/Logging.pdf |binary inst/doc/Parallel.pdf |binary tests/testthat/test-saveAndLoadJson.R | 45 +++++++++++++++++++++++++++++----- 11 files changed, 128 insertions(+), 52 deletions(-)
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Title: Incorporating Previous Findings When Evaluating New Data
Description: Functions for revealing what happens when effect size estimates
from previous studies are taken into account when evaluating each new dataset
in a study sequence. The analyses can be conducted for cumulative
meta-analyses and for Bayesian data analyses. The package contains sample
data for a wide selection of research topics. Jointly considering
previous findings along with new data is more likely to result in correct
conclusions than does the traditional practice of not incorporating previous
findings, which often results in a back and forth ping-pong of conclusions
when evaluating a sequence of studies.
O'Connor & Ermacora (2021, <doi:10.3758/bf03200807>).
Author: Brian P. O'Connor
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between NO.PING.PONG versions 0.1.4 dated 2021-07-05 and 0.1.6 dated 2022-12-08
NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Alcohol_Intake.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Anxiety_Therapy.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_CBT_Autism.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_CBT_Social_Anxiety.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Cannabis_Psychosis.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Ego_Depletion.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Hypomanic_BIS.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_IAT_Discrimination.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Many_Labs.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Math_Performance.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_Omega3_Depression.rda |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.02.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.077.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.10.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.11.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.20.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.32.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationR.57.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_PopulationRneg.04.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/data/data_SelfEsteem_Depression.rdata |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Alcohol_Intake.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Anxiety_Therapy.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_CBT_Autism.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_CBT_Social_Anxiety.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Cannabis_Psychosis.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Ego_Depletion.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Hypomanic_BIS.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_IAT_Discrimination.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Many_Labs.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Math_Performance.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_Omega3_Depression.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.02.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.077.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.10.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.11.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.20.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.32.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationR.57.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_PopulationRneg.04.Rd |only NO.PING.PONG-0.1.4/NO.PING.PONG/man/data_SelfEsteem_Depression.Rd |only NO.PING.PONG-0.1.6/NO.PING.PONG/DESCRIPTION | 10 NO.PING.PONG-0.1.6/NO.PING.PONG/MD5 | 63 NO.PING.PONG-0.1.6/NO.PING.PONG/NAMESPACE | 2 NO.PING.PONG-0.1.6/NO.PING.PONG/R/CONVERT_ES.R | 4 NO.PING.PONG-0.1.6/NO.PING.PONG/R/NO.PING.PONG.R | 1160 +++++----- NO.PING.PONG-0.1.6/NO.PING.PONG/R/PLOT_NO.PING.PONG.R | 142 - NO.PING.PONG-0.1.6/NO.PING.PONG/R/boc.R | 290 -- NO.PING.PONG-0.1.6/NO.PING.PONG/R/onAttach.R |only NO.PING.PONG-0.1.6/NO.PING.PONG/data/data_NPP.rda |only NO.PING.PONG-0.1.6/NO.PING.PONG/man/CONVERT_ES.Rd | 12 NO.PING.PONG-0.1.6/NO.PING.PONG/man/NO.PING.PONG-package.Rd | 17 NO.PING.PONG-0.1.6/NO.PING.PONG/man/NO.PING.PONG.Rd | 343 ++ NO.PING.PONG-0.1.6/NO.PING.PONG/man/PLOT_NO.PING.PONG.Rd | 81 NO.PING.PONG-0.1.6/NO.PING.PONG/man/data_NPP.Rd |only 54 files changed, 1093 insertions(+), 1031 deletions(-)
Title: Determine the Clinical Significance in Clinical Trials
Description: A clinical significance analysis can be used to determine if an
intervention has a meaningful or practical effect for patients. You provide
a tidy data set plus a few more metrics and this package will take care of
it to make your results publication ready as proposed by Jacobson et al.,
(1984) <doi:10.1016/S0005-7894(84)80002-7>.
Author: Benedikt Claus [aut, cre]
Maintainer: Benedikt Claus <b.claus@pedscience.de>
Diff between clinicalsignificance versions 1.0.0 dated 2022-06-03 and 1.2.0 dated 2022-12-08
clinicalsignificance-1.0.0/clinicalsignificance/R/calc_slope_data.R |only clinicalsignificance-1.0.0/clinicalsignificance/inst/doc/clinical-significance-cutoffs.R |only clinicalsignificance-1.0.0/clinicalsignificance/inst/doc/clinical-significance-cutoffs.Rmd |only clinicalsignificance-1.0.0/clinicalsignificance/inst/doc/clinical-significance-cutoffs.html |only clinicalsignificance-1.0.0/clinicalsignificance/tests/testthat/_snaps/plot/eb-slopes-grouped.svg |only clinicalsignificance-1.0.0/clinicalsignificance/tests/testthat/_snaps/plot/eb-slopes-ungrouped.svg |only clinicalsignificance-1.0.0/clinicalsignificance/vignettes/clinical-significance-cutoffs.Rmd |only clinicalsignificance-1.2.0/clinicalsignificance/DESCRIPTION | 11 clinicalsignificance-1.2.0/clinicalsignificance/MD5 | 121 - clinicalsignificance-1.2.0/clinicalsignificance/NAMESPACE | 2 clinicalsignificance-1.2.0/clinicalsignificance/NEWS.md |only clinicalsignificance-1.2.0/clinicalsignificance/R/calc_cutoff.R | 13 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_en.R | 41 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_gln.R | 10 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_ha.R | 3 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_hll.R | 8 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_hlm.R | 38 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_jt.R | 3 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_rci_nk.R | 7 clinicalsignificance-1.2.0/clinicalsignificance/R/calc_recovered.R | 23 clinicalsignificance-1.2.0/clinicalsignificance/R/clinical_significance.R | 93 - clinicalsignificance-1.2.0/clinicalsignificance/R/create_summary_table.R | 53 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_en.R | 6 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_gln.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_ha.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_hll.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_jt.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/R/generate_rci_data_nk.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/R/get_augmented_data.R | 12 clinicalsignificance-1.2.0/clinicalsignificance/R/get_cutoff.R | 2 clinicalsignificance-1.2.0/clinicalsignificance/R/get_cutoff_descriptives.R | 2 clinicalsignificance-1.2.0/clinicalsignificance/R/get_n.R | 2 clinicalsignificance-1.2.0/clinicalsignificance/R/globals.R |only clinicalsignificance-1.2.0/clinicalsignificance/R/plot.R | 74 clinicalsignificance-1.2.0/clinicalsignificance/R/prep_data.R | 8 clinicalsignificance-1.2.0/clinicalsignificance/R/rci-utils.R | 8 clinicalsignificance-1.2.0/clinicalsignificance/README.md | 13 clinicalsignificance-1.2.0/clinicalsignificance/build/vignette.rds |binary clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinical-significance-plot.R | 10 clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinical-significance-plot.Rmd | 14 clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinical-significance-plot.html | 240 +-- clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinicalsignificance.R | 2 clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinicalsignificance.Rmd | 2 clinicalsignificance-1.2.0/clinicalsignificance/inst/doc/clinicalsignificance.html | 156 +- clinicalsignificance-1.2.0/clinicalsignificance/man/clinical_significance.Rd | 40 clinicalsignificance-1.2.0/clinicalsignificance/man/figures/README-unnamed-chunk-5-1.png |only clinicalsignificance-1.2.0/clinicalsignificance/man/figures/README-unnamed-chunk-6-1.png |only clinicalsignificance-1.2.0/clinicalsignificance/man/figures/logo.png |binary clinicalsignificance-1.2.0/clinicalsignificance/man/get_augmented_data.Rd | 7 clinicalsignificance-1.2.0/clinicalsignificance/man/plot.clinisig.Rd | 24 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/calc_recovered.md | 35 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/clinical_significance.md | 760 +++++----- clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-en.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-gln.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-ha.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-hll.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-jt-with-grouping.svg | 306 +--- clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-jt.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/base-plot-nk.svg | 46 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/trajectories-grouped.svg | 296 +-- clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/_snaps/plot/trajectories-ungrouped.svg | 42 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/test-calc_rci_en.R | 56 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/test-get_augmented_data.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/test-plot.R | 4 clinicalsignificance-1.2.0/clinicalsignificance/tests/testthat/test-prep_data.R | 2 clinicalsignificance-1.2.0/clinicalsignificance/vignettes/clinical-significance-plot.Rmd | 14 clinicalsignificance-1.2.0/clinicalsignificance/vignettes/clinicalsignificance.Rmd | 2 67 files changed, 1334 insertions(+), 1531 deletions(-)
More information about clinicalsignificance at CRAN
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Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Oyvind Langsrud [aut, cre],
Daniel Lupp [aut],
Bjoern-Helge Mevik [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.3.4 dated 2022-08-16 and 1.3.8 dated 2022-12-08
DESCRIPTION | 10 +- MD5 | 34 ++++----- NAMESPACE | 2 R/DummyApply.R | 4 - R/DummyDuplicated.R | 112 ++++++++++++++++--------------- R/FormulaSelection.R |only R/GaussIndependent.R | 8 +- R/GaussSuppression.R | 24 +++++- man/As_TsparseMatrix.Rd | 52 +++++++------- man/AutoHierarchies.Rd | 4 - man/DummyApply.Rd | 108 ++++++++++++++--------------- man/DummyDuplicated.Rd | 12 --- man/FormulaSelection.Rd |only man/GaussIndependent.Rd | 9 ++ man/Hierarchies2ModelMatrix.Rd | 4 - man/HierarchiesAndFormula2ModelMatrix.Rd | 4 - man/Hierarchy2Formula.Rd | 4 - man/HierarchyCompute.Rd | 4 - man/HierarchyFix.Rd | 4 - 19 files changed, 214 insertions(+), 185 deletions(-)
Title: Adaptive Generalized PCA
Description: Implements adaptive gPCA, as described in: Fukuyama, J. (2017)
<arXiv:1702.00501>. The package also includes functionality for applying
the method to 'phyloseq' objects so that the method can be easily applied
to microbiome data and a 'shiny' app for interactive visualization.
Author: Julia Fukuyama [aut, cre]
Maintainer: Julia Fukuyama <julia.fukuyama@gmail.com>
Diff between adaptiveGPCA versions 0.1.2 dated 2018-03-14 and 0.1.3 dated 2022-12-08
DESCRIPTION | 6 MD5 | 10 R/adaptivegpca-package.R | 4 build/vignette.rds |binary inst/doc/adaptive_gpca_vignette.R | 22 inst/doc/adaptive_gpca_vignette.html | 1755 ++++++++++++++++++++++++++++++++--- 6 files changed, 1647 insertions(+), 150 deletions(-)
Title: Robust Linear Mixed Effects Models
Description: Implements the Robust Scoring Equations estimator to fit linear
mixed effects models robustly.
Robustness is achieved by modification of the scoring equations
combined with the Design Adaptive Scale approach.
Author: Manuel Koller
Maintainer: Manuel Koller <kollerma@proton.me>
Diff between robustlmm versions 3.1-1 dated 2022-12-02 and 3.1-2 dated 2022-12-08
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- R/processFile.R | 20 ++++++++++++++++++-- inst/doc/rlmer.pdf |binary inst/doc/simulationStudies.pdf |binary src/rlmerMatrixUtils.cpp | 38 +++++++++++++++++++++++++++++--------- 6 files changed, 57 insertions(+), 21 deletions(-)
Title: Import, Process, Analyse, and Calculate Rates from Respirometry
Data
Description: Provides a structural, reproducible workflow for the
processing and analysis of respirometry data. It contains analytical
functions and utilities for working with oxygen time-series to determine
respiration or oxygen production rates, and to make it easier to report and
share analyses.
Author: Nicholas Carey [aut, cre],
Januar Harianto [aut]
Maintainer: Nicholas Carey <nicholascarey@gmail.com>
Diff between respR versions 2.0.2 dated 2022-03-25 and 2.1.0 dated 2022-12-08
respR-2.0.2/respR/R/subset_rate.R |only respR-2.0.2/respR/data/test_lin_data.rda |only respR-2.0.2/respR/man/plot_ar.Rd |only respR-2.0.2/respR/man/plot_ar_grid.Rd |only respR-2.0.2/respR/man/subset_rate.Rd |only respR-2.0.2/respR/man/test_lin_data.Rd |only respR-2.0.2/respR/tests/testthat/test-subset_rate.R |only respR-2.1.0/respR/DESCRIPTION | 24 respR-2.1.0/respR/MD5 | 215 +- respR-2.1.0/respR/NAMESPACE | 14 respR-2.1.0/respR/NEWS.md | 83 - respR-2.1.0/respR/R/adjust_rate.R | 121 - respR-2.1.0/respR/R/adjust_rate.ft.R | 18 respR-2.1.0/respR/R/auto_rate.R | 110 - respR-2.1.0/respR/R/auto_rate.int.R |only respR-2.1.0/respR/R/auto_rate_funs.R | 10 respR-2.1.0/respR/R/calc_rate.R | 46 respR-2.1.0/respR/R/calc_rate.bg.R | 11 respR-2.1.0/respR/R/calc_rate.ft.R | 11 respR-2.1.0/respR/R/calc_rate.int.R |only respR-2.1.0/respR/R/convert_DO.R | 61 respR-2.1.0/respR/R/convert_rate.R | 225 ++- respR-2.1.0/respR/R/convert_rate.ft.R | 34 respR-2.1.0/respR/R/data.R | 23 respR-2.1.0/respR/R/import_file.R | 88 - respR-2.1.0/respR/R/inspect.R | 27 respR-2.1.0/respR/R/inspect.ft.R | 4 respR-2.1.0/respR/R/oxy_crit.R | 11 respR-2.1.0/respR/R/select_rate.R |only respR-2.1.0/respR/R/subset_data.R | 67 respR-2.1.0/respR/R/unit_args.R | 22 respR-2.1.0/respR/R/util_funs.R | 67 respR-2.1.0/respR/R/util_plots.R | 387 +++-- respR-2.1.0/respR/R/util_val.R | 65 respR-2.1.0/respR/README.md | 42 respR-2.1.0/respR/inst/CITATION | 2 respR-2.1.0/respR/man/adjust_rate.Rd | 64 respR-2.1.0/respR/man/adjust_rate.ft.Rd | 8 respR-2.1.0/respR/man/auto_rate.Rd | 43 respR-2.1.0/respR/man/auto_rate.int.Rd |only respR-2.1.0/respR/man/auto_rate.rep.Rd |only respR-2.1.0/respR/man/calc_rate.Rd | 19 respR-2.1.0/respR/man/calc_rate.int.Rd |only respR-2.1.0/respR/man/calc_rate.rep.Rd |only respR-2.1.0/respR/man/class.val.Rd | 17 respR-2.1.0/respR/man/convert_rate.Rd | 106 + respR-2.1.0/respR/man/convert_rate.ft.Rd | 25 respR-2.1.0/respR/man/import_file.Rd | 45 respR-2.1.0/respR/man/intermittent.rd.Rd | 9 respR-2.1.0/respR/man/mean.adjust_rate.Rd | 1 respR-2.1.0/respR/man/mean.adjust_rate.ft.Rd | 1 respR-2.1.0/respR/man/mean.auto_rate.Rd | 1 respR-2.1.0/respR/man/mean.auto_rate.int.Rd |only respR-2.1.0/respR/man/mean.calc_rate.Rd | 1 respR-2.1.0/respR/man/mean.calc_rate.bg.Rd | 1 respR-2.1.0/respR/man/mean.calc_rate.ft.Rd | 1 respR-2.1.0/respR/man/mean.calc_rate.int.Rd |only respR-2.1.0/respR/man/mean.convert_DO.Rd | 1 respR-2.1.0/respR/man/mean.convert_rate.Rd | 1 respR-2.1.0/respR/man/mean.convert_rate.ft.Rd | 1 respR-2.1.0/respR/man/mean.inspect.Rd | 1 respR-2.1.0/respR/man/mean.inspect.ft.Rd | 1 respR-2.1.0/respR/man/mean.oxy_crit.Rd | 1 respR-2.1.0/respR/man/overlap.p.Rd |only respR-2.1.0/respR/man/oxy_crit.Rd | 7 respR-2.1.0/respR/man/plot.adjust_rate.Rd | 1 respR-2.1.0/respR/man/plot.adjust_rate.ft.Rd | 1 respR-2.1.0/respR/man/plot.auto_rate.Rd | 1 respR-2.1.0/respR/man/plot.auto_rate.int.Rd |only respR-2.1.0/respR/man/plot.calc_rate.Rd | 3 respR-2.1.0/respR/man/plot.calc_rate.bg.Rd | 1 respR-2.1.0/respR/man/plot.calc_rate.ft.Rd | 1 respR-2.1.0/respR/man/plot.calc_rate.int.Rd |only respR-2.1.0/respR/man/plot.convert_DO.Rd | 1 respR-2.1.0/respR/man/plot.convert_rate.Rd | 24 respR-2.1.0/respR/man/plot.convert_rate.ft.Rd | 1 respR-2.1.0/respR/man/plot.inspect.Rd | 1 respR-2.1.0/respR/man/plot.inspect.ft.Rd | 1 respR-2.1.0/respR/man/plot.oxy_crit.Rd | 1 respR-2.1.0/respR/man/print.adjust_rate.Rd | 1 respR-2.1.0/respR/man/print.adjust_rate.ft.Rd | 1 respR-2.1.0/respR/man/print.auto_rate.Rd | 1 respR-2.1.0/respR/man/print.auto_rate.int.Rd |only respR-2.1.0/respR/man/print.calc_rate.Rd | 1 respR-2.1.0/respR/man/print.calc_rate.bg.Rd | 1 respR-2.1.0/respR/man/print.calc_rate.ft.Rd | 1 respR-2.1.0/respR/man/print.calc_rate.int.Rd |only respR-2.1.0/respR/man/print.convert_DO.Rd | 1 respR-2.1.0/respR/man/print.convert_rate.Rd | 1 respR-2.1.0/respR/man/print.convert_rate.ft.Rd | 1 respR-2.1.0/respR/man/print.inspect.Rd | 1 respR-2.1.0/respR/man/print.inspect.ft.Rd | 1 respR-2.1.0/respR/man/print.oxy_crit.Rd | 1 respR-2.1.0/respR/man/select_rate.Rd |only respR-2.1.0/respR/man/subset_data.Rd | 50 respR-2.1.0/respR/man/summary.adjust_rate.Rd | 1 respR-2.1.0/respR/man/summary.adjust_rate.ft.Rd | 1 respR-2.1.0/respR/man/summary.auto_rate.Rd | 6 respR-2.1.0/respR/man/summary.auto_rate.int.Rd |only respR-2.1.0/respR/man/summary.calc_rate.Rd | 1 respR-2.1.0/respR/man/summary.calc_rate.bg.Rd | 1 respR-2.1.0/respR/man/summary.calc_rate.ft.Rd | 1 respR-2.1.0/respR/man/summary.calc_rate.int.Rd |only respR-2.1.0/respR/man/summary.convert_DO.Rd | 1 respR-2.1.0/respR/man/summary.convert_rate.Rd | 1 respR-2.1.0/respR/man/summary.convert_rate.ft.Rd | 1 respR-2.1.0/respR/man/summary.inspect.Rd | 1 respR-2.1.0/respR/man/summary.inspect.ft.Rd | 1 respR-2.1.0/respR/man/summary.oxy_crit.Rd | 1 respR-2.1.0/respR/man/unit_args.Rd | 15 respR-2.1.0/respR/tests/testthat/test-adjust_rate.R | 82 - respR-2.1.0/respR/tests/testthat/test-auto_rate.R | 26 respR-2.1.0/respR/tests/testthat/test-auto_rate.int.R |only respR-2.1.0/respR/tests/testthat/test-calc_rate.R | 189 -- respR-2.1.0/respR/tests/testthat/test-calc_rate.ft.R | 13 respR-2.1.0/respR/tests/testthat/test-calc_rate.int.R |only respR-2.1.0/respR/tests/testthat/test-convert_DO.R | 12 respR-2.1.0/respR/tests/testthat/test-convert_rate.R | 1165 +++++++++------- respR-2.1.0/respR/tests/testthat/test-convert_rate.ft.R | 4 respR-2.1.0/respR/tests/testthat/test-oxy_crit.R | 464 +++--- respR-2.1.0/respR/tests/testthat/test-select_rate.R |only respR-2.1.0/respR/tests/testthat/test-subset_data.R | 22 122 files changed, 2472 insertions(+), 1779 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.6.0 dated 2022-11-25 and 0.6.1 dated 2022-12-08
duckdb-0.6.0/duckdb/man/expr_constant.Rd |only duckdb-0.6.0/duckdb/man/expr_function.Rd |only duckdb-0.6.0/duckdb/man/expr_reference.Rd |only duckdb-0.6.0/duckdb/man/expr_set_alias.Rd |only duckdb-0.6.0/duckdb/man/expr_tostring.Rd |only duckdb-0.6.0/duckdb/man/rel_aggregate.Rd |only duckdb-0.6.0/duckdb/man/rel_alias.Rd |only duckdb-0.6.0/duckdb/man/rel_distinct.Rd |only duckdb-0.6.0/duckdb/man/rel_explain.Rd |only duckdb-0.6.0/duckdb/man/rel_filter.Rd |only duckdb-0.6.0/duckdb/man/rel_from_df.Rd |only duckdb-0.6.0/duckdb/man/rel_inner_join.Rd |only duckdb-0.6.0/duckdb/man/rel_order.Rd |only duckdb-0.6.0/duckdb/man/rel_project.Rd |only duckdb-0.6.0/duckdb/man/rel_set_alias.Rd |only duckdb-0.6.0/duckdb/man/rel_sql.Rd |only duckdb-0.6.0/duckdb/src/altrep.cpp |only duckdb-0.6.0/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table_as.cpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/decimal_cast.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/list.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_table_as.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/main/capi_internal.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/buffer/managed_buffer.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/table_index.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/duckdb/storage/table_statistics.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/include/extension_functions.hpp |only duckdb-0.6.0/duckdb/src/duckdb/src/storage/buffer/managed_buffer.cpp |only duckdb-0.6.0/duckdb/src/duckdb/src/storage/table_index.cpp |only duckdb-0.6.0/duckdb/src/include/altrepstring.hpp |only duckdb-0.6.1/duckdb/DESCRIPTION | 6 duckdb-0.6.1/duckdb/MD5 | 386 +-- duckdb-0.6.1/duckdb/NAMESPACE | 16 duckdb-0.6.1/duckdb/R/cpp11.R | 16 duckdb-0.6.1/duckdb/R/dbQuoteIdentifier__duckdb_connection.R | 10 duckdb-0.6.1/duckdb/R/relational.R | 86 duckdb-0.6.1/duckdb/src/Makevars | 2 duckdb-0.6.1/duckdb/src/Makevars.win | 2 duckdb-0.6.1/duckdb/src/cpp11.cpp | 36 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 12 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 141 - duckdb-0.6.1/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 12 duckdb-0.6.1/duckdb/src/duckdb/src/common/allocator.cpp | 20 duckdb-0.6.1/duckdb/src/duckdb/src/common/box_renderer.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/common/radix_partitioning.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/common/sort/radix_sort.cpp | 15 duckdb-0.6.1/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 5 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/column_data_allocator.cpp | 12 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/column_data_collection_segment.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/hash.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/hugeint.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/partitioned_column_data.cpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/common/types/string_heap.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/execution/column_binding_resolver.cpp | 29 duckdb-0.6.1/duckdb/src/duckdb/src/execution/index/art/art.cpp | 13 duckdb-0.6.1/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 23 duckdb-0.6.1/duckdb/src/duckdb/src/execution/nested_loop_join/nested_loop_join_mark.cpp | 45 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/helper/physical_limit_percent.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 9 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 24 duckdb-0.6.1/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 22 duckdb-0.6.1/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/nested/list.cpp | 203 + duckdb-0.6.1/duckdb/src/duckdb/src/function/aggregate/regression/regr_count.cpp | 9 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/date/date_part.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/date/strftime.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/function/scalar/struct/struct_insert.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb.h | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 51 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/catalog/mapping_value.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/add.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/convert_to_string.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/multiply.hpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/operator/subtract.hpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/radix.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/type_util.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 257 -- duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/date.hpp | 81 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/datetime.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/hash.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/interval.hpp | 14 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/null_value.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/partitioned_column_data.hpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/row_data_collection.hpp | 27 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/time.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 119 + duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/column_binding_resolver.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_join.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/execution/operator/join/physical_nested_loop_join.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/appender.hpp | 15 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/db_instance_cache.hpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/optimizer.hpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/parallel/pipeline.hpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/having_binder.hpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/table_function_binder.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_aggregate.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_column_data_get.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_cteref.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delete.hpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_delim_get.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_dummy_scan.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_insert.hpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_projection.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_unnest.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_window.hpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/planner/operator_extension.hpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 19 duckdb-0.6.1/duckdb/src/duckdb/src/main/appender.cpp | 50 duckdb-0.6.1/duckdb/src/duckdb/src/main/client_context.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/main/config.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 27 duckdb-0.6.1/duckdb/src/duckdb/src/main/settings/settings.cpp | 22 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/deliminator.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 14 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pullup/pullup_both_side.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pullup/pullup_filter.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_filter.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/parser/transform/helpers/transform_orderby.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 11 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 28 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 6 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp | 1 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 14 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/planner/expression_binder/table_function_binder.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/planner/logical_operator.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_cteref.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_delim_get.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_dummy_scan.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_expression_get.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_extension_operator.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_recursive_cte.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp | 7 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_set_operation.cpp | 5 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp | 5 duckdb-0.6.1/duckdb/src/duckdb/src/planner/operator/logical_window.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/planner/planner.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 27 duckdb-0.6.1/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 19 duckdb-0.6.1/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/storage/data_table.cpp | 8 duckdb-0.6.1/duckdb/src/duckdb/src/storage/local_storage.cpp | 16 duckdb-0.6.1/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 4 duckdb-0.6.1/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 10 duckdb-0.6.1/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 3 duckdb-0.6.1/duckdb/src/duckdb/src/transaction/cleanup_state.cpp | 5 duckdb-0.6.1/duckdb/src/duckdb/third_party/fsst/libfsst.cpp | 1087 +++++----- duckdb-0.6.1/duckdb/src/duckdb/third_party/thrift/thrift/transport/TBufferTransports.h | 1 duckdb-0.6.1/duckdb/src/duckdb/third_party/thrift/thrift/transport/TTransportException.h | 1 duckdb-0.6.1/duckdb/src/duckdb/ub_src_planner_expression_binder.cpp | 2 duckdb-0.6.1/duckdb/src/duckdb/ub_src_planner_operator.cpp | 2 duckdb-0.6.1/duckdb/src/include/rapi.hpp | 6 duckdb-0.6.1/duckdb/src/include/reltoaltrep.hpp |only duckdb-0.6.1/duckdb/src/relational.cpp | 4 duckdb-0.6.1/duckdb/src/reltoaltrep.cpp |only duckdb-0.6.1/duckdb/src/scan.cpp | 11 duckdb-0.6.1/duckdb/src/statement.cpp | 459 ---- duckdb-0.6.1/duckdb/src/transform.cpp |only duckdb-0.6.1/duckdb/src/utils.cpp | 1 duckdb-0.6.1/duckdb/tests/testthat/test_null_byte.R | 6 duckdb-0.6.1/duckdb/tests/testthat/test_relational.R | 32 213 files changed, 2213 insertions(+), 1869 deletions(-)
Title: Interactive Data Tables for R
Description: Interactive data tables for R, based on the 'React Table'
JavaScript library. Provides an HTML widget that can be used in 'R Markdown'
or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre],
Tanner Linsley [ctb, cph] ,
Emotion team and other contributors [ctb, cph] ,
Kent Russell [ctb, cph] ,
Ramnath Vaidyanathan [ctb, cph] ,
Joe Cheng [ctb, cph] ,
JJ Allaire [ctb, cph] ,
Yihui Xie [ctb, cph] ,
Kenton Russell [ctb, c [...truncated...]
Maintainer: Greg Lin <glin@glin.io>
Diff between reactable versions 0.4.0 dated 2022-12-04 and 0.4.1 dated 2022-12-08
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ inst/htmlwidgets/reactable.yaml | 2 +- tests/testthat/test-reactable.R | 13 +++++++++++++ 5 files changed, 27 insertions(+), 8 deletions(-)
Title: Tools for Lazy and Non-Standard Evaluation
Description: Functions to capture, inspect, manipulate, and create
lazy values (promises), "..." lists, and active calls.
Author: Peter Meilstrup <peter.meilstrup@gmail.com>
Maintainer: Peter Meilstrup <peter.meilstrup@gmail.com>
Diff between nseval versions 0.4.2 dated 2022-05-24 and 0.4.3 dated 2022-12-08
DESCRIPTION | 10 ++++----- MD5 | 20 +++++++++---------- NEWS.md | 13 +++++++++--- man/caller.Rd | 6 +++-- man/do.Rd | 12 +++++++---- src/dots.c | 35 +++++++++++++++++++--------------- src/getpromise.c | 56 ++++++++++++++++++++++++++++++++++--------------------- src/promises.c | 7 ++++-- src/promises.h | 2 - src/vadr.c | 2 - src/vadr.h | 2 - 11 files changed, 100 insertions(+), 65 deletions(-)
Title: Black-Box Optimization Toolkit
Description: Features highly configurable search spaces via the 'paradox'
package and optimizes every user-defined objective function. The package
includes several optimization algorithms e.g. Random Search, Iterated
Racing, Bayesian Optimization (in 'mlr3mbo') and Hyperband (in
'mlr3hyperband'). bbotk is the base package of 'mlr3tuning', 'mlr3fselect'
and 'miesmuschel'.
Author: Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut],
Olaf Mersmann [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between bbotk versions 0.7.1 dated 2022-11-30 and 0.7.2 dated 2022-12-08
DESCRIPTION | 16 +- MD5 | 14 +- NEWS.md | 4 R/ContextOptimization.R | 2 inst/WORDLIST | 6 inst/doc/bbotk.html | 238 ++++++++++++++++++------------------ man/bbotk-package.Rd | 2 tests/testthat/test_nds_selection.R | 4 8 files changed, 151 insertions(+), 135 deletions(-)
Title: 'Asio' C++ Header Files
Description: 'Asio' is a cross-platform C++ library for network and low-level
I/O programming that provides developers with a consistent asynchronous model
using a modern C++ approach. It is also included in Boost but requires linking
when used with Boost. Standalone it can be used header-only (provided a recent
compiler). 'Asio' is written and maintained by Christopher M. Kohlhoff, and
released under the 'Boost Software License', Version 1.0.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between AsioHeaders versions 1.22.1-1 dated 2022-06-14 and 1.22.1-2 dated 2022-12-08
ChangeLog | 13 +++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- inst/NEWS.Rd | 7 +++++++ inst/include/asio/detail/impl/handler_tracking.ipp | 2 +- inst/include/asio/detail/impl/socket_ops.ipp | 6 +++--- inst/include/asio/ip/impl/network_v4.ipp | 2 +- inst/include/asio/ip/impl/network_v6.ipp | 2 +- 8 files changed, 37 insertions(+), 17 deletions(-)
Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based
inventory data from the U.S. Department of Agriculture, Forest Service,
Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut],
Gretchen Moisen [aut],
Paul Patterson [aut],
Chris Toney [aut],
Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTA versions 3.4.2 dated 2022-08-10 and 3.5.0 dated 2022-12-08
FIESTA-3.4.2/FIESTA/R/IDBinternal.R |only FIESTA-3.4.2/FIESTA/R/check.popdata.R |only FIESTA-3.4.2/FIESTA/R/modGBlulc.R |only FIESTA-3.5.0/FIESTA/DESCRIPTION | 12 FIESTA-3.5.0/FIESTA/MD5 | 158 FIESTA-3.5.0/FIESTA/NAMESPACE | 4 FIESTA-3.5.0/FIESTA/NEWS.md | 11 FIESTA-3.5.0/FIESTA/R/DBgetCSV.R | 20 FIESTA-3.5.0/FIESTA/R/DBgetEvalid.R | 1140 +++-- FIESTA-3.5.0/FIESTA/R/DBgetPlots.R | 3054 +++++++++------- FIESTA-3.5.0/FIESTA/R/DBgetSQLite.R | 10 FIESTA-3.5.0/FIESTA/R/DBgetStrata.R | 118 FIESTA-3.5.0/FIESTA/R/DBgetXY.R | 1178 ++++-- FIESTA-3.5.0/FIESTA/R/FIESTA-package.R | 12 FIESTA-3.5.0/FIESTA/R/ISAinternal.R | 23 FIESTA-3.5.0/FIESTA/R/check.PROP.R | 7 FIESTA-3.5.0/FIESTA/R/check.auxiliary.R | 57 FIESTA-3.5.0/FIESTA/R/check.estdata.R | 2 FIESTA-3.5.0/FIESTA/R/check.popdataDWM.R |only FIESTA-3.5.0/FIESTA/R/check.popdataP2VEG.R |only FIESTA-3.5.0/FIESTA/R/check.popdataPLT.R |only FIESTA-3.5.0/FIESTA/R/check.popdataVOL.R |only FIESTA-3.5.0/FIESTA/R/datFilter.R | 2 FIESTA-3.5.0/FIESTA/R/datSumCond.R | 2 FIESTA-3.5.0/FIESTA/R/datSumTree.R | 209 - FIESTA-3.5.0/FIESTA/R/datSumTreeDom.R | 38 FIESTA-3.5.0/FIESTA/R/dbTables.R |only FIESTA-3.5.0/FIESTA/R/est.outtabs.R | 6 FIESTA-3.5.0/FIESTA/R/getRHG.R |only FIESTA-3.5.0/FIESTA/R/modGBdwm.R |only FIESTA-3.5.0/FIESTA/R/modGBp2veg.R | 284 + FIESTA-3.5.0/FIESTA/R/modGBpop.R | 424 +- FIESTA-3.5.0/FIESTA/R/modGBratio.R | 11 FIESTA-3.5.0/FIESTA/R/modMApop.R | 285 - FIESTA-3.5.0/FIESTA/R/modSAarea.R | 60 FIESTA-3.5.0/FIESTA/R/modSApop.R | 271 - FIESTA-3.5.0/FIESTA/R/modSAtree.R | 42 FIESTA-3.5.0/FIESTA/R/popTableIDs.R | 25 FIESTA-3.5.0/FIESTA/R/popTables.R | 30 FIESTA-3.5.0/FIESTA/R/re_exports.R | 6 FIESTA-3.5.0/FIESTA/R/spClipPoint.R | 2 FIESTA-3.5.0/FIESTA/R/spExportSpatial.R | 22 FIESTA-3.5.0/FIESTA/R/spExtractPoly.R | 4 FIESTA-3.5.0/FIESTA/R/spGetAuxiliary.R | 74 FIESTA-3.5.0/FIESTA/R/spGetPlots.R | 2409 ++++-------- FIESTA-3.5.0/FIESTA/R/spGetSAdoms.R | 43 FIESTA-3.5.0/FIESTA/R/spGetXY.R | 535 -- FIESTA-3.5.0/FIESTA/R/spReprojectRaster.R | 2 FIESTA-3.5.0/FIESTA/R/spReprojectVector.R | 6 FIESTA-3.5.0/FIESTA/R/spZonalRast.R | 2 FIESTA-3.5.0/FIESTA/R/zzz.R | 6 FIESTA-3.5.0/FIESTA/build/vignette.rds |binary FIESTA-3.5.0/FIESTA/data/ref_popType.rda |only FIESTA-3.5.0/FIESTA/data/ref_species.rda |binary FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_manual_mod_est.Rmd | 3 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_manual_mod_est.html | 3 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_GB.R | 17 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_GB.Rmd | 17 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_GB.html | 1132 ++--- FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_MA.html | 590 +-- FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_PB.html | 25 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_SA.R | 35 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_SA.Rmd | 35 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_SA.html | 198 - FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_dat.html | 25 FIESTA-3.5.0/FIESTA/inst/doc/FIESTA_tutorial_sp.html | 13 FIESTA-3.5.0/FIESTA/man/DBgetCSV.Rd | 3 FIESTA-3.5.0/FIESTA/man/DBgetEvalid.Rd | 11 FIESTA-3.5.0/FIESTA/man/DBgetPlots.Rd | 158 FIESTA-3.5.0/FIESTA/man/DBgetStrata.Rd | 41 FIESTA-3.5.0/FIESTA/man/DBgetXY.Rd | 167 FIESTA-3.5.0/FIESTA/man/datSumTreeDom.Rd | 2 FIESTA-3.5.0/FIESTA/man/dbTables.Rd |only FIESTA-3.5.0/FIESTA/man/modGBdwm.Rd |only FIESTA-3.5.0/FIESTA/man/modGBp2veg.Rd | 3 FIESTA-3.5.0/FIESTA/man/modGBpop.Rd | 3 FIESTA-3.5.0/FIESTA/man/modMApop.Rd | 14 FIESTA-3.5.0/FIESTA/man/popTableIDs.Rd | 18 FIESTA-3.5.0/FIESTA/man/popTables.Rd | 20 FIESTA-3.5.0/FIESTA/man/reexports.Rd | 4 FIESTA-3.5.0/FIESTA/man/ref_popType.Rd |only FIESTA-3.5.0/FIESTA/man/spGetAuxiliary.Rd | 2 FIESTA-3.5.0/FIESTA/man/spGetPlots.Rd | 200 - FIESTA-3.5.0/FIESTA/man/spGetXY.Rd | 119 FIESTA-3.5.0/FIESTA/vignettes/FIESTA_manual_mod_est.Rmd | 3 FIESTA-3.5.0/FIESTA/vignettes/FIESTA_tutorial_GB.Rmd | 17 FIESTA-3.5.0/FIESTA/vignettes/FIESTA_tutorial_SA.Rmd | 35 87 files changed, 7385 insertions(+), 6134 deletions(-)