Title: Predicting Totals and Weighted Sums from Spatial Data
Description: Performs predictions of totals and weighted sums, or finite population block kriging, on spatial data using the methods in Ver Hoef (2008) <doi:10.1007/s10651-007-0035-y>. The primary outputs are an estimate of the total, mean, or weighted sum in the region, an estimated prediction variance, and a plot of the predicted and observed values. This is useful primarily to users with ecological data that are counts or densities measured on some sites in a finite area of interest. Spatial prediction for the total count or average density in the entire region can then be done using the functions in this package.
Author: Matt Higham [cre, aut],
Jay Ver Hoef [aut],
Bryce Frank [aut],
Michael Dumelle [aut]
Maintainer: Matt Higham <mhigham@stlawu.edu>
Diff between sptotal versions 1.0.0 dated 2021-07-06 and 1.0.1 dated 2022-12-11
sptotal-1.0.0/sptotal/data/AKmoose.rda |only sptotal-1.0.0/sptotal/man/AKmoose.Rd |only sptotal-1.0.1/sptotal/DESCRIPTION | 28 sptotal-1.0.1/sptotal/MD5 | 38 sptotal-1.0.1/sptotal/NEWS.md | 11 sptotal-1.0.1/sptotal/R/GR2.R | 4 sptotal-1.0.1/sptotal/R/data.R | 23 sptotal-1.0.1/sptotal/R/logLik.slmfit.R | 2 sptotal-1.0.1/sptotal/R/plot.slmfit.R | 1 sptotal-1.0.1/sptotal/R/predict.slmfit.R | 2 sptotal-1.0.1/sptotal/R/residuals.slmfit.R | 2 sptotal-1.0.1/sptotal/R/utils.R | 21 sptotal-1.0.1/sptotal/build/vignette.rds |binary sptotal-1.0.1/sptotal/data/AKmoose_df.rda |only sptotal-1.0.1/sptotal/inst/doc/sptotal-vignette.R | 54 sptotal-1.0.1/sptotal/inst/doc/sptotal-vignette.Rmd | 119 - sptotal-1.0.1/sptotal/inst/doc/sptotal-vignette.html | 2021 +++++++++++++++---- sptotal-1.0.1/sptotal/man/AKmoose_df.Rd |only sptotal-1.0.1/sptotal/man/corModelExponential.Rd | 8 sptotal-1.0.1/sptotal/man/m2LL.FPBK.nodet.Rd | 6 sptotal-1.0.1/sptotal/man/plot.slmfit.Rd | 1 sptotal-1.0.1/sptotal/vignettes/sptotal-vignette.Rmd | 119 - 22 files changed, 1734 insertions(+), 726 deletions(-)
Title: Error Detection in Science
Description: Test published summary statistics for consistency
(Brown and Heathers, 2017, <https://journals.sagepub.com/doi/10.1177/1948550616673876/>;
Allard, 2018, <https://aurelienallard.netlify.app/post/anaytic-grimmer-possibility-standard-deviations/>;
Heathers and Brown, 2019, <https://osf.io/5vb3u/>).
The package also provides infrastructure for implementing new
error detection techniques.
Author: Lukas Jung [aut, cre],
Aurelien Allard [ctb]
Maintainer: Lukas Jung <jung-lukas@gmx.net>
Diff between scrutiny versions 0.2.2 dated 2022-08-22 and 0.2.3 dated 2022-12-11
DESCRIPTION | 29 MD5 | 168 ++--- NAMESPACE | 8 NEWS.md | 14 R/audit.R | 43 - R/before-inside-parens.R | 52 - R/debit-map-seq.R | 10 R/debit-map-total-n.R | 18 R/debit-map.R | 12 R/debit-plot.R | 108 ++- R/decimal-places.R | 28 R/duplicate-count-colpair.R |only R/duplicate-count.R | 4 R/function-factory-helpers.R | 5 R/function-map-seq.R | 43 + R/function-map-total-n.R | 12 R/function-map.R | 9 R/grim-map-seq.R | 8 R/grim-map-total-n.R | 18 R/grim-plot.R | 50 + R/grimmer-map-seq.R | 20 R/grimmer-map-total-n.R | 4 R/grimmer-map.R | 7 R/grimmer.R | 4 R/import-reexport.R | 2 R/mapper-function-helpers.R | 35 - R/metadata.R |only R/method-audit-seq.R |only R/method-audit-total-n.R |only R/method-detect.R | 6 R/method-dup-count-colpair.R |only R/restore-zeros.R | 134 +++- R/seq-decimal.R | 32 R/seq-disperse.R | 23 R/seq-length.R |only R/seq-predicates.R | 83 +- R/split-by-parens.R | 62 - R/utils.R | 854 ++++++++++++++++++++++---- R/write-doc-audit.R | 9 README.md | 11 inst/doc/consistency-tests.Rmd | 4 inst/doc/consistency-tests.html | 224 +++--- inst/doc/debit.R | 4 inst/doc/debit.Rmd | 4 inst/doc/debit.html | 278 ++++---- inst/doc/grim.html | 159 ++-- inst/doc/grimmer.Rmd | 2 inst/doc/grimmer.html | 164 ++-- inst/doc/infrastructure.R | 2 inst/doc/infrastructure.Rmd | 16 inst/doc/infrastructure.html | 191 +++-- inst/doc/related.Rmd | 2 inst/doc/related.html | 25 inst/doc/rounding.html | 141 ++-- inst/doc/wrangling.R | 9 inst/doc/wrangling.Rmd | 29 inst/doc/wrangling.html | 423 +++++++----- man/audit.Rd | 15 man/before_parens.Rd | 26 man/debit_map_seq.Rd | 9 man/debit_map_total_n.Rd | 17 man/debit_plot.Rd | 5 man/duplicate_count_colpair.Rd |only man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |only man/grim_map_seq.Rd | 7 man/grim_map_total_n.Rd | 17 man/grimmer.Rd | 6 man/grimmer_map.Rd | 7 man/grimmer_map_seq.Rd | 20 man/grimmer_map_total_n.Rd | 4 man/is_seq_linear.Rd | 40 - man/restore_zeros.Rd | 87 ++ man/seq_disperse.Rd | 5 man/seq_endpoint.Rd | 8 man/seq_length.Rd |only man/split_by_parens.Rd | 6 man/unnest_consistency_cols.Rd | 6 tests/testthat/test-audit.R | 39 + tests/testthat/test-decimal-places.R | 11 tests/testthat/test-duplicate-count-colpair.R |only tests/testthat/test-restore-zeros.R | 55 + tests/testthat/test-split-by-parens.R | 5 tests/testthat/test-utils.R | 19 vignettes/consistency-tests.Rmd | 4 vignettes/debit.Rmd | 4 vignettes/grimmer.Rmd | 2 vignettes/infrastructure.Rmd | 16 vignettes/related.Rmd | 2 vignettes/wrangling.Rmd | 29 90 files changed, 2710 insertions(+), 1363 deletions(-)
Title: The Corset Plot
Description: Corset plots are a visualization technique used strictly to visualize repeat measures
at 2 time points (such as pre- and post- data). The distribution of measurements are visualized at
each time point, whilst the trajectories of individual change are visualized by connecting the pre-
and post- values linearly. These lines can be coloured to represent the magnitude of change, or
other user-defined value. This method of visualization is ideal for showing the heterogeneity of
data, including differences by sub-groups. The package relies on 'ggplot2' allowing for easy
integration so that users can customize their visualizations as required. Users can create corset
plots using data in either wide or long format using the functions gg_corset() or gg_corset_elongated(), respectively.
Author: Kyla Belisario
Maintainer: Kyla Belisario <kyla_belisario@protonmail.com>
Diff between ggcorset versions 0.4.0 dated 2022-12-10 and 0.4.5 dated 2022-12-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/gg_corset.R | 4 ++-- R/gg_corset_elongated.R | 4 ++-- inst/doc/corset_plot_intro.html | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: The Free Algebra
Description: The free algebra in R with non-commuting indeterminates.
Uses 'disordR' discipline
(Hankin, 2022, <doi:10.48550/ARXIV.2210.03856>). To cite the
package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2211.04002>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between freealg versions 1.0-8 dated 2022-08-27 and 1.1-0 dated 2022-12-11
DESCRIPTION | 15 +- MD5 | 55 ++++---- NEWS.md | 10 + R/dot.R | 3 R/free.R | 41 +++++- README.md | 61 ++------ build/freealg.pdf |binary build/partial.rdb |binary build/vignette.rds |binary data/dot.rda |binary inst/CITATION |only inst/doc/adjoint.R | 12 - inst/doc/adjoint.Rnw | 48 +++++-- inst/doc/adjoint.pdf |binary inst/doc/freealg.R | 7 - inst/doc/freealg.Rmd | 37 +++-- inst/doc/freealg.html | 313 +++++++++++----------------------------------- inst/freealg_arxiv.Rnw |only inst/freealg_arxiv.bib |only inst/freealg_matrix.Rmd | 4 man/abelianize.Rd |only man/adjoint.Rd | 2 man/drop.Rd |only man/grade.Rd | 7 - man/subs.Rd | 13 + tests/testthat/test_aaa.R | 6 tests/testthat/test_aaf.R | 4 tests/testthat/test_zzz.R | 15 ++ vignettes/adjoint.Rnw | 48 +++++-- vignettes/free.bib | 17 ++ vignettes/freealg.Rmd | 37 +++-- 31 files changed, 384 insertions(+), 371 deletions(-)
Title: Sound Synthesis and Acoustic Analysis
Description: Performs parametric synthesis of sounds with harmonic and noise
components such as animal vocalizations or human voice. Also offers tools
for audio manipulation and acoustic analysis, including pitch tracking,
spectral analysis, audio segmentation, pitch and formant shifting, etc.
Includes four interactive web apps for synthesizing and annotating audio,
manually correcting pitch contours, and measuring formant frequencies.
Reference: Anikin (2019) <doi:10.3758/s13428-018-1095-7>.
Author: Andrey Anikin [aut, cre]
Maintainer: Andrey Anikin <rty.anik@rambler.ru>
Diff between soundgen versions 2.5.2 dated 2022-08-14 and 2.5.3 dated 2022-12-11
soundgen-2.5.2/soundgen/build |only soundgen-2.5.2/soundgen/inst/doc |only soundgen-2.5.2/soundgen/vignettes |only soundgen-2.5.3/soundgen/DESCRIPTION | 12 soundgen-2.5.3/soundgen/MD5 | 76 -- soundgen-2.5.3/soundgen/NEWS | 18 soundgen-2.5.3/soundgen/R/SSM.R | 37 - soundgen-2.5.3/soundgen/R/am.R | 2 soundgen-2.5.3/soundgen/R/analyze.R | 341 ++++----- soundgen-2.5.3/soundgen/R/defaults.R | 10 soundgen-2.5.3/soundgen/R/filters.R | 3 soundgen-2.5.3/soundgen/R/io.R | 4 soundgen-2.5.3/soundgen/R/morph.R | 2 soundgen-2.5.3/soundgen/R/pitchTrackers.R | 6 soundgen-2.5.3/soundgen/R/soundgen.R | 8 soundgen-2.5.3/soundgen/R/spectralDescr.R | 135 ++- soundgen-2.5.3/soundgen/R/spectrogram.R | 475 ++++++++----- soundgen-2.5.3/soundgen/R/timeStretch.R | 32 soundgen-2.5.3/soundgen/R/utilities_analyze.R | 6 soundgen-2.5.3/soundgen/R/utilities_math.R | 102 +- soundgen-2.5.3/soundgen/R/vtl.R | 2 soundgen-2.5.3/soundgen/data/def_form.rda |binary soundgen-2.5.3/soundgen/data/defaults_analyze.rda |binary soundgen-2.5.3/soundgen/inst/shiny/annotation_app/server.R | 8 soundgen-2.5.3/soundgen/inst/shiny/annotation_app/ui.R | 29 soundgen-2.5.3/soundgen/inst/shiny/formant_app/server.R | 71 + soundgen-2.5.3/soundgen/inst/shiny/formant_app/ui.R | 21 soundgen-2.5.3/soundgen/inst/shiny/pitch_app/server.R | 8 soundgen-2.5.3/soundgen/inst/shiny/pitch_app/ui.R | 23 soundgen-2.5.3/soundgen/inst/shiny/soundgen_main/server.R | 2 soundgen-2.5.3/soundgen/man/analyze.Rd | 41 - soundgen-2.5.3/soundgen/man/dot-analyze.Rd | 4 soundgen-2.5.3/soundgen/man/dot-spectrogram.Rd | 17 soundgen-2.5.3/soundgen/man/gaussianSmooth2D.Rd | 37 - soundgen-2.5.3/soundgen/man/getCheckerboardKernel.Rd | 4 soundgen-2.5.3/soundgen/man/morph.Rd | 2 soundgen-2.5.3/soundgen/man/spectrogram.Rd | 50 + 37 files changed, 1021 insertions(+), 567 deletions(-)
Title: Tools for Creating, Updating, and Analyzing Survey Replicate
Weights
Description: Provides tools for creating and working with survey replicate weights,
extending functionality of the 'survey' package from Lumley (2004) <doi:10.18637/jss.v009.i08>.
Methods are provided for applying nonresponse adjustments to
both full-sample and replicate weights as described by
Rust and Rao (1996) <doi:10.1177/096228029600500305>.
Implements methods for sample-based calibration described by Opsomer and Erciulescu (2021)
<https://www150.statcan.gc.ca/n1/pub/12-001-x/2021002/article/00006-eng.htm>.
Diagnostic functions are included to compare weights and weighted estimates
from different sets of replicate weights.
Author: Ben Schneider [aut, cre]
Maintainer: Ben Schneider <benjamin.julius.schneider@gmail.com>
Diff between svrep versions 0.3.0 dated 2022-07-05 and 0.4.0 dated 2022-12-11
svrep-0.3.0/svrep/R/example_data.R |only svrep-0.4.0/svrep/DESCRIPTION | 25 - svrep-0.4.0/svrep/MD5 | 80 ++- svrep-0.4.0/svrep/NAMESPACE | 9 svrep-0.4.0/svrep/NEWS.md | 48 ++ svrep-0.4.0/svrep/R/as_bootstrap_design.R |only svrep-0.4.0/svrep/R/as_data_frame_with_weights.R | 4 svrep-0.4.0/svrep/R/bootstrap_helpers.R |only svrep-0.4.0/svrep/R/calibrate_to_estimate.R | 8 svrep-0.4.0/svrep/R/calibrate_to_sample.R | 2 svrep-0.4.0/svrep/R/generalized_bootstrap.R |only svrep-0.4.0/svrep/R/libraries_data.R |only svrep-0.4.0/svrep/R/lou_vax_data.R |only svrep-0.4.0/svrep/R/make_bootstrap_weights.R |only svrep-0.4.0/svrep/R/quadratic_forms.R |only svrep-0.4.0/svrep/R/svyby_repwts.R | 2 svrep-0.4.0/svrep/README.md | 182 +++++--- svrep-0.4.0/svrep/build/vignette.rds |binary svrep-0.4.0/svrep/data/library_census.rda |only svrep-0.4.0/svrep/data/library_multistage_sample.rda |only svrep-0.4.0/svrep/data/library_stsys_sample.rda |only svrep-0.4.0/svrep/inst/doc/bootstrap-replicates.R |only svrep-0.4.0/svrep/inst/doc/bootstrap-replicates.Rmd |only svrep-0.4.0/svrep/inst/doc/bootstrap-replicates.html |only svrep-0.4.0/svrep/inst/doc/nonresponse-adjustments.R | 3 svrep-0.4.0/svrep/inst/doc/nonresponse-adjustments.Rmd | 8 svrep-0.4.0/svrep/inst/doc/nonresponse-adjustments.html | 220 ++++------ svrep-0.4.0/svrep/inst/doc/sample-based-calibration.html | 165 +++---- svrep-0.4.0/svrep/man/as_bootstrap_design.Rd |only svrep-0.4.0/svrep/man/as_gen_boot_design.Rd |only svrep-0.4.0/svrep/man/calibrate_to_estimate.Rd | 6 svrep-0.4.0/svrep/man/calibrate_to_sample.Rd | 2 svrep-0.4.0/svrep/man/distribute_matrix_across_clusters.Rd |only svrep-0.4.0/svrep/man/estimate_boot_reps_for_target_cv.Rd |only svrep-0.4.0/svrep/man/estimate_boot_sim_cv.Rd |only svrep-0.4.0/svrep/man/libraries.Rd |only svrep-0.4.0/svrep/man/lou_pums_microdata.Rd | 18 svrep-0.4.0/svrep/man/lou_vax_survey.Rd | 2 svrep-0.4.0/svrep/man/lou_vax_survey_control_totals.Rd | 2 svrep-0.4.0/svrep/man/make_gen_boot_factors.Rd |only svrep-0.4.0/svrep/man/make_quad_form_matrix.Rd |only svrep-0.4.0/svrep/man/make_rwyb_bootstrap_weights.Rd |only svrep-0.4.0/svrep/man/make_sd_matrix.Rd |only svrep-0.4.0/svrep/man/make_srswor_matrix.Rd |only svrep-0.4.0/svrep/man/shift_weight.Rd | 46 +- svrep-0.4.0/svrep/man/svrep-package.Rd | 7 svrep-0.4.0/svrep/man/svyby_repwts.Rd | 2 svrep-0.4.0/svrep/tests/testthat/test-as_bootstrap_design.R |only svrep-0.4.0/svrep/tests/testthat/test-as_data_frame_with_weights.R | 12 svrep-0.4.0/svrep/tests/testthat/test-bootstrap-helpers.R |only svrep-0.4.0/svrep/tests/testthat/test-generalized-bootstrap.R |only svrep-0.4.0/svrep/tests/testthat/test-quadratic-forms.R |only svrep-0.4.0/svrep/tests/testthat/test-rwyb_bootstrap.R |only svrep-0.4.0/svrep/vignettes/bootstrap-replicates.Rmd |only svrep-0.4.0/svrep/vignettes/nonresponse-adjustments.Rmd | 8 svrep-0.4.0/svrep/vignettes/references.bib |only svrep-0.4.0/svrep/vignettes/vignette-references.bib | 130 +++++ 57 files changed, 652 insertions(+), 339 deletions(-)
Title: General Purpose Client for 'ERDDAP' Servers
Description: General purpose R client for 'ERDDAP' servers. Includes
functions to search for 'datasets', get summary information on
'datasets', and fetch 'datasets', in either 'csv' or 'netCDF' format.
'ERDDAP' information:
<https://upwell.pfeg.noaa.gov/erddap/information.html>.
Author: Scott Chamberlain [aut],
Ben Tupper [ctb],
Roy Mendelssohn [cre, ctb]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between rerddap versions 1.0.0 dated 2022-10-03 and 1.0.1 dated 2022-12-11
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 6 +++++- R/cache_setup.R | 23 ++++++++++------------- R/on_load.R | 2 +- build/vignette.rds |binary inst/doc/Using_rerddap.html | 4 ++-- man/cache_setup.Rd | 20 +++++++++----------- 8 files changed, 39 insertions(+), 40 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-24 2.2.3
2020-05-28 2.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-02 2.2.3
2021-06-17 2.2.1
Title: Extending Base 'R' Lists
Description: Extends the functionality of base 'R' lists and
provides specialized data structures 'deque',
'set', 'dict', and 'dict.table', the latter to extend the 'data.table'
package.
Author: Roman Pahl [aut, cre]
Maintainer: Roman Pahl <roman.pahl@gmail.com>
Diff between container versions 1.0.3 dated 2022-11-15 and 1.0.4 dated 2022-12-11
container-1.0.3/container/man/DequeS3.Rd |only container-1.0.3/container/man/DictS3.Rd |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark1_70f411eb4a86ba5d83ce515e6be5287c.RData |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark1_70f411eb4a86ba5d83ce515e6be5287c.rdb |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark1_70f411eb4a86ba5d83ce515e6be5287c.rdx |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark2_552811329284dfdadcffe28af1af5ca1.RData |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark2_552811329284dfdadcffe28af1af5ca1.rdb |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark2_552811329284dfdadcffe28af1af5ca1.rdx |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark3_6e17e0a3d5b8c820bfc91a6934918e38.RData |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark3_6e17e0a3d5b8c820bfc91a6934918e38.rdb |only container-1.0.3/container/vignettes/manage-data-columns_cache/html/benchmark3_6e17e0a3d5b8c820bfc91a6934918e38.rdx |only container-1.0.4/container/DESCRIPTION | 8 +- container-1.0.4/container/MD5 | 28 +++++----- container-1.0.4/container/inst/doc/manage-data-columns.html | 6 +- container-1.0.4/container/inst/tinytest/test_0-dict.table.R | 10 +-- container-1.0.4/container/man/dequeS3.Rd |only container-1.0.4/container/man/dictS3.Rd |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark1_4a2416bfb8823c0e84ef05ebb2a4ed08.RData |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark1_4a2416bfb8823c0e84ef05ebb2a4ed08.rdb |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark1_4a2416bfb8823c0e84ef05ebb2a4ed08.rdx |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark2_d196efd4114cf2a71286539c6d2e9a28.RData |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark2_d196efd4114cf2a71286539c6d2e9a28.rdb |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark2_d196efd4114cf2a71286539c6d2e9a28.rdx |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark3_853090ef01ecf856aca87847009a3462.RData |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark3_853090ef01ecf856aca87847009a3462.rdb |only container-1.0.4/container/vignettes/manage-data-columns_cache/html/benchmark3_853090ef01ecf856aca87847009a3462.rdx |only 26 files changed, 25 insertions(+), 27 deletions(-)
Title: Data Package for 'pathfindR'
Description: This is a data-only package, containing data needed to run the CRAN
package 'pathfindR', a package for enrichment analysis utilizing active
subnetworks. This package contains protein-protein interaction network data,
data related to gene sets and example input/output data.
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR.data versions 1.1.2 dated 2021-08-20 and 1.1.3 dated 2022-12-11
pathfindR.data-1.1.2/pathfindR.data/man/GO_all_terms_df.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/biogrid_adj_list.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/genemania_adj_list.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/intact_adj_list.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/kegg_adj_list.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/mmu_string_adj_list.Rd |only pathfindR.data-1.1.2/pathfindR.data/man/string_adj_list.Rd |only pathfindR.data-1.1.3/pathfindR.data/DESCRIPTION | 8 pathfindR.data-1.1.3/pathfindR.data/MD5 | 77 ++--- pathfindR.data-1.1.3/pathfindR.data/NEWS.md | 17 + pathfindR.data-1.1.3/pathfindR.data/R/data.R | 153 ++-------- pathfindR.data-1.1.3/pathfindR.data/R/sysdata.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/RA_clustered.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/RA_comparison_output.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/RA_output.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/biocarta_descriptions.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/biocarta_genes.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/cell_markers_descriptions.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/cell_markers_gsets.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/go_all_genes.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/kegg_descriptions.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/kegg_genes.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/mmu_kegg_descriptions.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/mmu_kegg_genes.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/myeloma_output.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/pathfindR.data_updates.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/reactome_descriptions.rda |binary pathfindR.data-1.1.3/pathfindR.data/data/reactome_genes.rda |binary pathfindR.data-1.1.3/pathfindR.data/man/RA_clustered.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/RA_comparison_output.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/RA_output.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/biocarta_descriptions.Rd | 2 pathfindR.data-1.1.3/pathfindR.data/man/biocarta_genes.Rd | 2 pathfindR.data-1.1.3/pathfindR.data/man/cell_markers_descriptions.Rd | 9 pathfindR.data-1.1.3/pathfindR.data/man/cell_markers_gsets.Rd | 9 pathfindR.data-1.1.3/pathfindR.data/man/go_all_genes.Rd | 6 pathfindR.data-1.1.3/pathfindR.data/man/kegg_descriptions.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/kegg_genes.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/mmu_kegg_descriptions.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/mmu_kegg_genes.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/myeloma_output.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/reactome_descriptions.Rd | 4 pathfindR.data-1.1.3/pathfindR.data/man/reactome_genes.Rd | 4 43 files changed, 126 insertions(+), 197 deletions(-)
More information about pathfindR.data at CRAN
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Title: Tidy IP Addresses
Description: Classes and functions for working with IP (Internet Protocol)
addresses and networks, inspired by the Python 'ipaddress' module.
Offers full support for both IPv4 and IPv6 (Internet Protocol versions
4 and 6) address spaces. It is specifically designed to work well with
the 'tidyverse'.
Author: David Hall [aut, cre]
Maintainer: David Hall <david.hall.physics@gmail.com>
Diff between ipaddress versions 0.5.5 dated 2022-08-12 and 0.5.6 dated 2022-12-11
DESCRIPTION | 8 +- MD5 | 28 +++---- NEWS.md | 4 + R/ipv6_transition.R | 6 - R/reverse_pointer.R | 4 - README.md | 38 +++++----- build/vignette.rds |binary inst/doc/ipaddress-classes.html | 124 +++++++++++++++++---------------- inst/doc/ipaddress-examples.html | 144 ++++++++++++++++++++------------------- man/ipv6-transition.Rd | 6 - man/reverse_pointer.Rd | 4 - src/ip_address.cpp | 4 - src/ip_network.cpp | 4 - src/ip_to_hex.cpp | 8 +- src/reverse_pointer.cpp | 8 +- 15 files changed, 203 insertions(+), 187 deletions(-)
Title: 'HiGHS' Optimization Solver
Description: R interface to 'HiGHS', an optimization solver for solving mixed integer
optimization problems with quadratic or linear objective and linear constraints.
Author: Florian Schwendinger [aut, cre],
Dirk Schumacher [aut],
Julian Hall [cph],
Ivet Galabova [cph],
Leona Gottwald [cph],
Michael Feldmeier [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between highs versions 0.1-4 dated 2022-09-26 and 0.1-5 dated 2022-12-11
highs-0.1-4/highs/inst/HiGHS/examples/call_highs_from_python1.py |only highs-0.1-4/highs/inst/HiGHS/src/ipm/basiclu/include |only highs-0.1-4/highs/inst/HiGHS/src/ipm/basiclu/src |only highs-0.1-4/highs/inst/HiGHS/src/ipm/ipx/include |only highs-0.1-4/highs/inst/HiGHS/src/ipm/ipx/src |only highs-0.1-5/highs/DESCRIPTION | 11 highs-0.1-5/highs/MD5 | 429 - highs-0.1-5/highs/R/highs.R | 7 highs-0.1-5/highs/inst/HiGHS/CMakeLists.txt | 14 highs-0.1-5/highs/inst/HiGHS/HConfig.h.bazel |only highs-0.1-5/highs/inst/HiGHS/LICENSE | 5 highs-0.1-5/highs/inst/HiGHS/README.md | 72 highs-0.1-5/highs/inst/HiGHS/WORKSPACE |only highs-0.1-5/highs/inst/HiGHS/app/RunHighs.cpp | 15 highs-0.1-5/highs/inst/HiGHS/examples/build.BAZEL |only highs-0.1-5/highs/inst/HiGHS/examples/call_highs_from_csharp.cs | 2 highs-0.1-5/highs/inst/HiGHS/examples/call_highs_from_fortran.f90 | 4 highs-0.1-5/highs/inst/HiGHS/examples/call_highs_from_python.py | 247 - highs-0.1-5/highs/inst/HiGHS/examples/minimal.py |only highs-0.1-5/highs/inst/HiGHS/extern/filereaderlp/reader.cpp | 2348 +++++----- highs-0.1-5/highs/inst/HiGHS/extern/zstr/zstr.hpp | 2 highs-0.1-5/highs/inst/HiGHS/src/CMakeLists.txt | 145 highs-0.1-5/highs/inst/HiGHS/src/Highs.h | 10 highs-0.1-5/highs/inst/HiGHS/src/interfaces/OsiHiGHSSolverInterface.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/interfaces/highs_csharp_api.cs | 405 + highs-0.1-5/highs/inst/HiGHS/src/interfaces/highspy/highspy/highs_bindings.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/interfaces/highspy/pyproject.toml | 48 highs-0.1-5/highs/inst/HiGHS/src/interfaces/highspy/setup.py | 2 highs-0.1-5/highs/inst/HiGHS/src/io/FilereaderLp.cpp | 33 highs-0.1-5/highs/inst/HiGHS/src/io/HMPSIO.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/io/HMpsFF.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/io/HMpsFF.h | 2 highs-0.1-5/highs/inst/HiGHS/src/ipm/IpxWrapper.cpp | 30 highs-0.1-5/highs/inst/HiGHS/src/ipm/IpxWrapper.h | 4 highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_factorize.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_factorize.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_get_factors.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_get_factors.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_initialize.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_initialize.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_factorize.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_free.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_get_factors.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_initialize.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_solve_dense.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_solve_for_update.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_solve_sparse.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_obj_update.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_object.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_object.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_dense.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_dense.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_for_update.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_for_update.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_sparse.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_solve_sparse.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_update.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/basiclu_update.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_build_factors.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_condest.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_def.h |only 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highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_dense.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_for_update.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_sparse.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_symbolic.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_solve_triangular.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/basiclu/lu_update.c |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basiclu_kernel.cc |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basiclu_kernel.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basiclu_wrapper.cc |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basiclu_wrapper.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basis.cc |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/basis.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/conjugate_residuals.cc |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/conjugate_residuals.h |only highs-0.1-5/highs/inst/HiGHS/src/ipm/ipx/control.cc |only 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highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsInterface.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsLp.cpp | 31 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsLpUtils.cpp | 300 - highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsLpUtils.h | 24 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsModelUtils.h | 12 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsOptions.h | 45 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsRuntimeOptions.h | 142 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsSolution.cpp | 6 highs-0.1-5/highs/inst/HiGHS/src/lp_data/HighsSolve.cpp | 73 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsCliqueTable.cpp | 663 +- highs-0.1-5/highs/inst/HiGHS/src/mip/HighsCliqueTable.h | 63 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsDynamicRowMatrix.cpp | 4 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsDynamicRowMatrix.h | 3 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsImplications.cpp | 292 - highs-0.1-5/highs/inst/HiGHS/src/mip/HighsImplications.h | 34 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsLpRelaxation.cpp | 20 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsLpRelaxation.h | 88 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsMipSolverData.cpp | 11 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsMipSolverData.h | 4 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsPrimalHeuristics.cpp | 6 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsSearch.cpp | 40 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsSearch.h | 7 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsSeparation.cpp | 3 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsTransformedLp.cpp | 217 highs-0.1-5/highs/inst/HiGHS/src/mip/HighsTransformedLp.h | 6 highs-0.1-5/highs/inst/HiGHS/src/parallel/HighsMutex.h | 2 highs-0.1-5/highs/inst/HiGHS/src/parallel/HighsRaceTimer.h |only highs-0.1-5/highs/inst/HiGHS/src/presolve/HPresolve.cpp | 97 highs-0.1-5/highs/inst/HiGHS/src/presolve/HPresolve.h | 1 highs-0.1-5/highs/inst/HiGHS/src/presolve/HighsPostsolveStack.h | 2 highs-0.1-5/highs/inst/HiGHS/src/presolve/ICrash.cpp | 3 highs-0.1-5/highs/inst/HiGHS/src/presolve/ICrashX.cpp | 4 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/basis.hpp | 10 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/devexharrispricing.hpp | 6 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/devexpricing.hpp | 8 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/factor.hpp | 2 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/feasibility_quass.hpp | 6 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/perturbation.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/quass.cpp | 34 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/quass.hpp | 10 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/ratiotest.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/reducedcosts.hpp | 8 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/reducedgradient.hpp | 6 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/scaling.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/qpsolver/steepestedgepricing.hpp | 6 highs-0.1-5/highs/inst/HiGHS/src/simplex/HApp.h | 14 highs-0.1-5/highs/inst/HiGHS/src/simplex/HEkk.cpp | 53 highs-0.1-5/highs/inst/HiGHS/src/simplex/HEkk.h | 1 highs-0.1-5/highs/inst/HiGHS/src/simplex/HEkkDual.cpp | 15 highs-0.1-5/highs/inst/HiGHS/src/simplex/HEkkDualMulti.cpp | 18 highs-0.1-5/highs/inst/HiGHS/src/simplex/HSimplex.cpp | 4 highs-0.1-5/highs/inst/HiGHS/src/simplex/HSimplexNla.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/simplex/HSimplexNlaDebug.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/simplex/HSimplexNlaProductForm.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/simplex/HighsSimplexAnalysis.cpp | 2 highs-0.1-5/highs/inst/HiGHS/src/simplex/SimplexStruct.h | 2 highs-0.1-5/highs/inst/HiGHS/src/test/DevKkt.cpp | 3 highs-0.1-5/highs/inst/HiGHS/src/util/HFactor.cpp | 54 highs-0.1-5/highs/inst/HiGHS/src/util/HFactor.h | 12 highs-0.1-5/highs/inst/HiGHS/src/util/HSet.h | 2 highs-0.1-5/highs/inst/HiGHS/src/util/HighsCDouble.h | 2 highs-0.1-5/highs/inst/HiGHS/src/util/HighsDataStack.h | 6 highs-0.1-5/highs/inst/HiGHS/src/util/HighsHash.h | 128 highs-0.1-5/highs/inst/HiGHS/src/util/HighsHashTree.h |only highs-0.1-5/highs/inst/HiGHS/src/util/HighsMatrixSlice.h | 8 highs-0.1-5/highs/inst/HiGHS/src/util/HighsMatrixUtils.h | 2 highs-0.1-5/highs/man/highs_solve.Rd | 7 223 files changed, 3807 insertions(+), 2830 deletions(-)
Title: Data to Support Fish Stock Assessment ('FSA') Package
Description: The datasets to support the Fish Stock Assessment ('FSA') package.
Author: Derek Ogle [aut, cre]
Maintainer: Derek Ogle <derekogle51@gmail.com>
Diff between FSAdata versions 0.3.9 dated 2022-02-12 and 0.4.0 dated 2022-12-11
DESCRIPTION | 19 - MD5 | 672 +++++++++++++++++++++++----------------------- NEWS.md |only R/AHerringChile.R | 2 R/AfricanRivers.R | 2 R/AlewifeLH.R | 2 R/AnchovetaChile.R | 2 R/BGHRfish.R | 2 R/BGHRsample.R | 2 R/BSkateGB.R | 4 R/BassFL.R | 2 R/BlackDrum2001.R | 2 R/BloaterLH.R | 2 R/BlueCatfish.R | 2 R/BlueCrab.R | 2 R/BluefishAge.R | 2 R/BluegillIL.R | 2 R/BluegillLM.R | 2 R/BluntnoseIL1.R | 2 R/Bonito.R | 2 R/BrookTroutNC.R | 2 R/BrookTroutNEWP.R | 4 R/BrookTroutNEWP1.R | 6 R/BrookTroutOnt.R | 2 R/BrownTroutVC1.R | 6 R/BullTroutRML1.R | 2 R/BullTroutRML2.R | 4 R/BullTroutTC.R | 2 R/CCatfishNB.R | 2 R/Cabezon.R | 2 R/Casselman1990.R | 2 R/ChinookKR.R | 2 R/CiscoTL.R | 4 R/CrappieARMS.R | 2 R/CreekChub.R | 2 R/CreelMN.R | 4 R/Croaker1.R | 2 R/Croaker2.R | 2 R/CutthroatALf.R | 4 R/DarterMahon.R | 4 R/DarterOnt.R | 2 R/Deckeretal1999.R | 2 R/EuroPerchTJ.R | 2 R/FHCatfish.R | 2 R/FHCatfishATL.R | 2 R/FSAdata.R | 4 R/FWDrumLE1.R | 2 R/FWDrumLE2.R | 4 R/Ghats.R | 2 R/GreensCreekMine.R | 4 R/Hake.R | 2 R/HalibutPAC.R | 2 R/Herman.R | 2 R/HerringBWE.R | 2 R/HerringISS.R | 2 R/HumpbackWFCR.R | 2 R/InchLake1.R | 2 R/InchLake2.R | 2 R/JobfishSIO.R | 2 R/JonesStockwell.R | 4 R/Jonubi1.R | 2 R/Jonubi2.R | 4 R/KingCrabAK.R | 2 R/LJCisco.R | 2 R/LMBassBL.R | 2 R/LMBassLCB.R | 2 R/LakeTroutALTER.R | 4 R/LakeTroutEggs.R | 2 R/LakeTroutGIS.R | 2 R/LakeTroutMI.R | 2 R/Lizardfish.R | 2 R/LobsterHI.R | 6 R/LobsterPEI.R | 6 R/Menhaden1.R | 4 R/Morwong1.R | 2 R/Morwong2.R | 2 R/Morwong3.R | 2 R/Morwong4.R | 2 R/Morwong4a.R | 4 R/Mosquitofish.R | 2 R/MulletBS.R | 2 R/MuskieSLR.R | 2 R/MuskieWI06MR.R | 2 R/PSalmonAK.R | 2 R/Pallid.R | 2 R/Pathfinder.R | 2 R/PikeHL.R | 2 R/PikeIL.R | 2 R/PikeNYPartial2.R | 4 R/PikeWindermere.R | 2 R/PygmyWFBC.R | 4 R/RBSmeltErie.R | 2 R/RBSmeltLM.R | 2 R/RBTroutKenai.R | 2 R/RBTroutUNSP.R | 2 R/RWhitefishAI.R | 2 R/RWhitefishIR.R | 2 R/RedDrum.R | 2 R/Riffleshell.R | 4 R/RockBassCL.R | 2 R/RockBassL01.R | 2 R/RockBassL02.R | 4 R/RuffeSLRH92.R | 2 R/RuffeTL89.R | 2 R/SLampreyGL.R | 2 R/SalmonADP.R | 2 R/SalmonidsMCCA.R | 4 R/SardineChile.R | 2 R/SardineLK.R | 2 R/SardinesPacific.R | 2 R/SculpinALTER.R | 4 R/ShadCR.R | 4 R/ShrimpGuam.R | 8 R/SimonsonLyons.R | 2 R/SiscowetMI2004.R | 2 R/Snapper.R | 2 R/SnapperHG1.R | 4 R/SnapperHG2.R | 4 R/SockeyeKL.R | 2 R/SockeyeSR.R | 2 R/SpotVA2.R | 4 R/SpottedSucker1.R | 2 R/StripedBass1.R | 2 R/StripedBass2.R | 2 R/StripedBass3.R | 4 R/StripedBass4.R | 2 R/StripedBass5.R | 2 R/StripedBass6.R | 2 R/SturgeonBL.R | 4 R/SturgeonGB.R | 2 R/SunfishIN.R | 4 R/SunfishLP.R | 2 R/TPrawnsEG.R | 2 R/TroutADP.R | 2 R/TroutBR.R | 2 R/TroutperchLM1.R | 2 R/TroutperchLM2.R | 2 R/TroutperchLM3.R | 2 R/VendaceLP.R | 2 R/VendaceLP2.R | 2 R/WShrimpGA.R | 2 R/WalleyeConsumption.R | 2 R/WalleyeEL.R | 2 R/WalleyeErie.R | 2 R/WalleyeErie2.R | 6 R/WalleyeKS.R | 2 R/WalleyeML.R | 6 R/WalleyeMN06a.R | 2 R/WalleyeMN06b.R | 2 R/WalleyePL.R | 2 R/WalleyePS.R | 4 R/WalleyeRL.R | 4 R/WalleyeWad.R | 2 R/WalleyeWyrlng.R | 2 R/WhiteGrunt1.R | 2 R/WhiteGrunt2.R | 2 R/WhitefishGSL.R | 2 R/WhitefishLS.R | 2 R/WhitefishMB.R | 2 R/WhitefishTB.R | 2 R/YERockfish.R | 2 R/YPerchCB1.R | 2 R/YPerchCB2.R | 2 R/YPerchGB.R | 2 R/YPerchGL.R | 4 R/YPerchRL.R | 2 R/YPerchSB.R | 2 R/YPerchSB1.R | 2 R/YPerchTL.R | 4 R/YTFlounder.R | 2 inst/extdata |only man/AHerringChile.Rd | 80 ++--- man/AfricanRivers.Rd | 76 ++--- man/AlewifeLH.Rd | 82 ++--- man/AnchovetaChile.Rd | 84 ++--- man/BGHRfish.Rd | 88 +++--- man/BGHRsample.Rd | 84 ++--- man/BSkateGB.Rd | 98 +++--- man/BassFL.Rd | 118 ++++---- man/BlackDrum2001.Rd | 98 +++--- man/BloaterLH.Rd | 82 ++--- man/BlueCatfish.Rd | 74 ++--- man/BlueCrab.Rd | 88 +++--- man/BluefishAge.Rd | 78 ++--- man/BluegillIL.Rd | 84 ++--- man/BluegillLM.Rd | 99 +++--- man/BluntnoseIL1.Rd | 88 +++--- man/Bonito.Rd | 82 ++--- man/BrookTroutNC.Rd | 80 ++--- man/BrookTroutNEWP.Rd | 94 +++--- man/BrookTroutNEWP1.Rd | 120 ++++---- man/BrookTroutOnt.Rd | 2 man/BrownTroutVC1.Rd | 88 +++--- man/BullTroutRML1.Rd | 88 +++--- man/BullTroutRML2.Rd | 94 +++--- man/BullTroutTC.Rd | 74 ++--- man/CCatfishNB.Rd | 88 +++--- man/Cabezon.Rd | 2 man/Casselman1990.Rd | 90 +++--- man/ChinookKR.Rd | 82 ++--- man/CiscoTL.Rd | 94 +++--- man/CrappieARMS.Rd | 86 ++--- man/CreekChub.Rd | 88 +++--- man/CreelMN.Rd | 4 man/Croaker1.Rd | 82 ++--- man/Croaker2.Rd | 82 ++--- man/CutthroatALf.Rd | 94 +++--- man/DarterMahon.Rd | 98 +++--- man/DarterOnt.Rd | 88 +++--- man/Deckeretal1999.Rd | 98 +++--- man/EuroPerchTJ.Rd | 82 ++--- man/FHCatfish.Rd | 84 ++--- man/FHCatfishATL.Rd | 84 ++--- man/FSAdata.Rd | 96 +++--- man/FWDrumLE1.Rd | 80 ++--- man/FWDrumLE2.Rd | 83 ++--- man/Ghats.Rd | 70 ++-- man/GreensCreekMine.Rd | 100 +++--- man/Hake.Rd | 82 ++--- man/HalibutPAC.Rd | 86 ++--- man/Herman.Rd | 98 +++--- man/HerringBWE.Rd | 82 ++--- man/HerringISS.Rd | 86 ++--- man/HumpbackWFCR.Rd | 92 +++--- man/InchLake1.Rd | 2 man/InchLake2.Rd | 2 man/JobfishSIO.Rd | 88 +++--- man/JonesStockwell.Rd | 98 +++--- man/Jonubi1.Rd | 80 ++--- man/Jonubi2.Rd | 79 ++--- man/KingCrabAK.Rd | 82 ++--- man/LJCisco.Rd | 82 ++--- man/LMBassBL.Rd | 76 ++--- man/LMBassLCB.Rd | 76 ++--- man/LakeTroutALTER.Rd | 136 ++++----- man/LakeTroutEggs.Rd | 70 ++-- man/LakeTroutGIS.Rd | 82 ++--- man/LakeTroutMI.Rd | 104 +++---- man/Lizardfish.Rd | 82 ++--- man/LobsterHI.Rd | 106 +++---- man/LobsterPEI.Rd | 96 +++--- man/Menhaden1.Rd | 92 +++--- man/Morwong1.Rd | 82 ++--- man/Morwong2.Rd | 82 ++--- man/Morwong3.Rd | 82 ++--- man/Morwong4.Rd | 80 ++--- man/Morwong4a.Rd | 87 +++-- man/Mosquitofish.Rd | 92 +++--- man/MulletBS.Rd | 82 ++--- man/MuskieSLR.Rd | 82 ++--- man/MuskieWI06MR.Rd | 2 man/PSalmonAK.Rd | 86 ++--- man/Pallid.Rd | 96 +++--- man/Pathfinder.Rd | 92 +++--- man/PikeHL.Rd | 96 +++--- man/PikeIL.Rd | 90 +++--- man/PikeNYPartial2.Rd | 96 +++--- man/PikeWindermere.Rd | 98 +++--- man/PygmyWFBC.Rd | 112 +++---- man/RBSmeltErie.Rd | 76 ++--- man/RBSmeltLM.Rd | 72 ++-- man/RBTroutKenai.Rd | 80 ++--- man/RBTroutUNSP.Rd | 88 +++--- man/RWhitefishAI.Rd | 74 ++--- man/RWhitefishIR.Rd | 74 ++--- man/RedDrum.Rd | 74 ++--- man/Riffleshell.Rd | 96 +++--- man/RockBassCL.Rd | 74 ++--- man/RockBassLO1.Rd | 80 ++--- man/RockBassLO2.Rd | 89 +++--- man/RuffeSLRH92.Rd | 130 ++++---- man/RuffeTL89.Rd | 72 ++-- man/SLampreyGL.Rd | 74 ++--- man/SalmonADP.Rd | 80 ++--- man/SalmonidsMCCA.Rd | 94 +++--- man/SardineChile.Rd | 2 man/SardineLK.Rd | 74 ++--- man/SardinesPacific.Rd | 82 ++--- man/SculpinALTER.Rd | 104 +++---- man/ShadCR.Rd | 110 +++---- man/ShrimpGuam.Rd | 118 ++++---- man/SimonsonLyons.Rd | 92 +++--- man/SiscowetMI2004.Rd | 102 +++--- man/Snapper.Rd | 72 ++-- man/SnapperHG1.Rd | 98 +++--- man/SnapperHG2.Rd | 90 +++--- man/SockeyeKL.Rd | 82 ++--- man/SockeyeSR.Rd | 90 +++--- man/SpotVA2.Rd | 90 +++--- man/SpottedSucker1.Rd | 74 ++--- man/StripedBass1.Rd | 82 ++--- man/StripedBass2.Rd | 80 ++--- man/StripedBass3.Rd | 87 +++-- man/StripedBass4.Rd | 88 +++--- man/StripedBass5.Rd | 88 +++--- man/StripedBass6.Rd | 88 +++--- man/SturgeonBL.Rd | 90 +++--- man/SturgeonGB.Rd | 76 ++--- man/SunfishIN.Rd | 88 +++--- man/SunfishLP.Rd | 74 ++--- man/TPrawnsEG.Rd | 2 man/TroutADP.Rd | 82 ++--- man/TroutBR.Rd | 82 ++--- man/TroutperchLM1.Rd | 82 ++--- man/TroutperchLM2.Rd | 72 ++-- man/TroutperchLM3.Rd | 83 ++--- man/VendaceLP.Rd | 82 ++--- man/VendaceLP2.Rd | 80 ++--- man/WShrimpGA.Rd | 90 +++--- man/WalleyeConsumption.Rd | 68 ++-- man/WalleyeEL.Rd | 86 ++--- man/WalleyeErie.Rd | 68 ++-- man/WalleyeErie2.Rd | 114 +++---- man/WalleyeKS.Rd | 100 +++--- man/WalleyeML.Rd | 92 +++--- man/WalleyeMN06a.Rd | 86 ++--- man/WalleyeMN06b.Rd | 92 +++--- man/WalleyePL.Rd | 94 +++--- man/WalleyePS.Rd | 104 +++---- man/WalleyeRL.Rd | 100 +++--- man/WalleyeWad.Rd | 90 +++--- man/WalleyeWyrlng.Rd | 90 +++--- man/WhiteGrunt1.Rd | 74 ++--- man/WhiteGrunt2.Rd | 82 ++--- man/WhitefishGSL.Rd | 114 +++---- man/WhitefishLS.Rd | 72 ++-- man/WhitefishMB.Rd | 92 +++--- man/WhitefishTB.Rd | 86 ++--- man/YERockfish.Rd | 2 man/YPerchCB1.Rd | 156 +++++----- man/YPerchCB2.Rd | 82 ++--- man/YPerchGB.Rd | 70 ++-- man/YPerchGL.Rd | 82 ++--- man/YPerchRL.Rd | 70 ++-- man/YPerchSB.Rd | 82 ++--- man/YPerchSB1.Rd | 84 ++--- man/YPerchTL.Rd | 92 +++--- man/YTFlounder.Rd | 90 +++--- 338 files changed, 7524 insertions(+), 7486 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash' and 'blake3' algorithms) permitting easy
comparison of R language objects, as well as functions such as'hmac()' to
create hash-based message authentication code. Please note that this package
is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be
used.
Author: Dirk Eddelbuettel <edd@debian.org> with contributions
by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek,
Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen,
Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx,
[...truncated...]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.30 dated 2022-10-18 and 0.6.31 dated 2022-12-11
ChangeLog | 13 +++++++++++++ DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- build/vignette.rds |binary src/digest.c | 38 +++++++++++++++++++------------------- 5 files changed, 42 insertions(+), 29 deletions(-)
Title: Analyzing Data with Cellwise Outliers
Description: Tools for detecting cellwise outliers and robust methods to analyze
data which may contain them. Contains the implementation of the algorithms described in
Rousseeuw and Van den Bossche (2018) <doi:10.1080/00401706.2017.1340909> (open access)
Hubert et al. (2019) <doi:10.1080/00401706.2018.1562989> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.1080/00401706.2019.1677270> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.1007/s10994-021-05960-5> (open access),
Raymaekers and Rousseeuw (2021) <doi:10.52933/jdssv.v1i3.18> (open access),
Raymaekers and Rousseeuw (2022) <arXiv:2207.13493> (open access)
Rousseeuw (2022) <arXiv:2209.12697> (open access).
Examples can be found in the vignettes:
"DDC_examples", "MacroPCA_examples", "wrap_examples", "transfo_examples",
"DI_examples", "cellMCD_examples" , "Correspondence_analysis_examples",
and "cellwise_weights_examples".
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut],
Wannes Van den Bossche [ctb],
Mia Hubert [ctb]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between cellWise versions 2.4.0 dated 2022-08-10 and 2.5.0 dated 2022-12-11
DESCRIPTION | 22 MD5 | 101 ++- NAMESPACE | 12 R/DDC.R | 190 +++---- R/DDCpredict.R | 410 ++++----------- R/MCDfixedcenter.R |only R/MacroPCA.R | 667 +++++++++++++++---------- R/MacroPCApredict.R | 347 ++++--------- R/RcppExports.R | 8 R/cellMap.R | 577 ++++++++++----------- R/cellwiseWeights.R |only build/partial.rdb |binary build/vignette.rds |binary data/data_brands.rdata |only data/data_clothes.rdata |only data/data_personality_traits.rdata |only data/datalist | 3 inst/doc/Correspondence_analysis_examples.R |only inst/doc/Correspondence_analysis_examples.Rmd |only inst/doc/Correspondence_analysis_examples.html |only inst/doc/DDC_examples.R | 174 +----- inst/doc/DDC_examples.Rmd | 174 +----- inst/doc/DDC_examples.html | 332 ++++-------- inst/doc/DI_examples.R | 12 inst/doc/DI_examples.Rmd | 12 inst/doc/DI_examples.html | 34 - inst/doc/MacroPCA_examples.R | 180 ++---- inst/doc/MacroPCA_examples.Rmd | 180 ++---- inst/doc/MacroPCA_examples.html | 248 +++------ inst/doc/cellMCD_examples.html | 44 - inst/doc/cellwise_weights_examples.R |only inst/doc/cellwise_weights_examples.Rmd |only inst/doc/cellwise_weights_examples.html |only inst/doc/transfo_examples.html | 42 - inst/doc/wrap_examples.R | 2 inst/doc/wrap_examples.Rmd | 2 inst/doc/wrap_examples.html | 22 man/DDC.Rd | 2 man/DDCpredict.Rd | 5 man/MacroPCA.Rd | 8 man/MacroPCApredict.Rd | 4 man/cellMCD.Rd | 4 man/cellMap.Rd | 54 +- man/cwLocScat.Rd |only man/data_brands.Rd |only man/data_clothes.Rd |only man/data_personality_traits.Rd |only man/plot_cellMCD.Rd | 3 man/unpack.Rd |only man/weightedEM.Rd |only man/wrap.Rd | 2 src/LocScaleEstimators.cpp | 183 +++--- src/LocScaleEstimators.h | 2 src/Main.cpp | 216 ++++---- src/RcppExports.cpp | 19 vignettes/Correspondence_analysis_examples.Rmd |only vignettes/DDC_examples.Rmd | 174 +----- vignettes/DI_examples.Rmd | 12 vignettes/MacroPCA_examples.Rmd | 180 ++---- vignettes/cellwise_weights_examples.Rmd |only vignettes/wrap_examples.Rmd | 2 61 files changed, 2061 insertions(+), 2604 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-18 1.6.5
2022-10-06 1.6.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-27 1.15
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-07 1.2.1
2022-04-08 1.0.0
2022-03-14 0.1.4
2022-01-20 0.1.3
2021-12-15 0.1.2
2021-11-30 0.1.1