Title: Miscellaneous Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Statistics: locate and tag peaks and valleys; label plot with the
equation of a fitted polynomial or other types of models; labels
with P-value, R^2 or adjusted R^2 or information criteria for fitted models;
label with ANOVA table for fitted models; label with summary for fitted
models. Model fit classes for which suitable methods are provided by package
'broom' and 'broom.mixed' are supported. Scales and stats to build volcano
and quadrant plots based on outcomes, fold changes, p-values and false
discovery rates.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Samer Mouksassi [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpmisc versions 0.5.1 dated 2022-10-15 and 0.5.2 dated 2022-12-17
DESCRIPTION | 12 - MD5 | 50 +++--- NEWS.md | 6 R/stat-correlation.R | 84 ++++++----- R/stat-fit-deviations.R | 1 R/stat-fit-residuals.R | 1 R/stat-ma-eq.R | 42 +++-- R/stat-peaks.R | 39 +++-- R/stat-poly-eq.R | 100 +++++++++---- R/stat-poly-line.R | 1 R/stat-quant-band.r | 1 R/stat-quant-eq.R | 53 ++++--- R/stat-quant-line.r | 1 README.md | 6 build/vignette.rds |binary inst/doc/model-based-annotations.html | 67 ++++---- man/FC_name.Rd | 70 ++++----- man/figures/README-readme-03-1.png |binary man/figures/README-unnamed-chunk-1-1.png |binary man/reverselog_trans.Rd | 44 ++--- man/scale_y_Pvalue.Rd | 234 +++++++++++++++---------------- man/stat_ma_eq.Rd | 4 man/stat_peaks.Rd | 6 man/stat_poly_eq.Rd | 4 man/stat_quant_eq.Rd | 18 +- man/symmetric_limits.Rd | 60 +++---- 26 files changed, 513 insertions(+), 391 deletions(-)
Title: Latin Hypercube Samples
Description: Provides a number of methods for creating and augmenting Latin Hypercube Samples and Orthogonal Array Latin Hypercube Samples.
Author: Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between lhs versions 1.1.5 dated 2022-03-21 and 1.1.6 dated 2022-12-17
ChangeLog | 96 ------------ DESCRIPTION | 8 - MD5 | 17 +- NEWS |only build/vignette.rds |binary inst/doc/augment_lhs.html | 349 ++++++++++++++++++++++++++++++++++++++++------ inst/doc/lhs_basics.html | 319 ++++++++++++++++++++++++++++++++---------- inst/doc/lhs_faq.html | 309 ++++++++++++++++++++++++++++++++++++---- src/init.c | 2 src/lhs_r.cpp | 2 10 files changed, 851 insertions(+), 251 deletions(-)
Title: Examples of Recursive Lists and Nested or Split Data Frames
Description: Recursive lists in the form of R objects, 'JSON', and 'XML',
for use in teaching and examples. Examples include color palettes,
Game of Thrones characters, 'GitHub' users and repositories, music
collections, and entities from the Star Wars universe. Data from the
'gapminder' package is also included, as a simple data frame and in
nested and split forms.
Author: Jennifer Bryan [aut, cre] ,
Charlotte Wickham [ctb],
Posit PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@rstudio.com>
Diff between repurrrsive versions 1.0.0 dated 2019-07-15 and 1.1.0 dated 2022-12-17
repurrrsive-1.0.0/repurrrsive/man/figures |only repurrrsive-1.0.0/repurrrsive/tests/testthat/helper.R |only repurrrsive-1.0.0/repurrrsive/tests/testthat/reference |only repurrrsive-1.1.0/repurrrsive/DESCRIPTION | 47 repurrrsive-1.1.0/repurrrsive/MD5 | 85 - repurrrsive-1.1.0/repurrrsive/NEWS.md | 9 repurrrsive-1.1.0/repurrrsive/R/discog.R | 2 repurrrsive-1.1.0/repurrrsive/R/gapminder.R | 6 repurrrsive-1.1.0/repurrrsive/R/gh_users_repos.R | 9 repurrrsive-1.1.0/repurrrsive/R/gmaps_cities.R |only repurrrsive-1.1.0/repurrrsive/R/got_chars.R | 3 repurrrsive-1.1.0/repurrrsive/R/repurrrsive-package.r | 8 repurrrsive-1.1.0/repurrrsive/R/swapi.R | 19 repurrrsive-1.1.0/repurrrsive/R/wesanderson.R | 3 repurrrsive-1.1.0/repurrrsive/README.md | 524 +--------- repurrrsive-1.1.0/repurrrsive/data/gmaps_cities.rda |only repurrrsive-1.1.0/repurrrsive/data/got_chars.rda |binary repurrrsive-1.1.0/repurrrsive/inst/extdata/got_chars.json | 5 repurrrsive-1.1.0/repurrrsive/inst/extdata/got_chars.xml | 1 repurrrsive-1.1.0/repurrrsive/man/discog.Rd | 11 repurrrsive-1.1.0/repurrrsive/man/discog_json.Rd | 3 repurrrsive-1.1.0/repurrrsive/man/gap_simple.Rd | 8 repurrrsive-1.1.0/repurrrsive/man/gh_repos.Rd | 16 repurrrsive-1.1.0/repurrrsive/man/gh_users.Rd | 15 repurrrsive-1.1.0/repurrrsive/man/gh_users_json.Rd | 5 repurrrsive-1.1.0/repurrrsive/man/gmaps_cities.Rd |only repurrrsive-1.1.0/repurrrsive/man/got_chars.Rd | 12 repurrrsive-1.1.0/repurrrsive/man/got_chars_json.Rd | 3 repurrrsive-1.1.0/repurrrsive/man/repurrrsive-package.Rd | 18 repurrrsive-1.1.0/repurrrsive/man/sw_people.Rd | 17 repurrrsive-1.1.0/repurrrsive/man/wesanderson.Rd | 14 repurrrsive-1.1.0/repurrrsive/man/wesanderson_json.Rd | 3 repurrrsive-1.1.0/repurrrsive/tests/testthat.R | 12 repurrrsive-1.1.0/repurrrsive/tests/testthat/_snaps |only repurrrsive-1.1.0/repurrrsive/tests/testthat/test-discog.R | 2 repurrrsive-1.1.0/repurrrsive/tests/testthat/test-gh_users_repos.R | 4 repurrrsive-1.1.0/repurrrsive/tests/testthat/test-gmaps_cities.R |only repurrrsive-1.1.0/repurrrsive/tests/testthat/test-got_chars.R | 2 repurrrsive-1.1.0/repurrrsive/tests/testthat/test-swapi.R | 12 repurrrsive-1.1.0/repurrrsive/tests/testthat/test-wesanderson.R | 2 40 files changed, 258 insertions(+), 622 deletions(-)
Title: Calculate Quantitative Ethnobotany Indices
Description: An implementation of the quantitative ethnobotany indices in R. The goal is to provide an easy-to-use platform for ethnobotanists to assess the cultural significance of plant species based on informant consensus. The package closely follows the paper by Tardio and Pardo-de-Santayana (2008). Tardio, J., and M. Pardo-de-Santayana, 2008. Cultural Importance Indices: A Comparative Analysis Based on the Useful Wild Plants of Southern Cantabria (Northern Spain) 1. Economic Botany, 62(1), 24-39. <doi:10.1007/s12231-007-9004-5>.
Author: Cory Whitney [aut, cre]
Maintainer: Cory Whitney <whitney.cory@gmail.com>
Diff between ethnobotanyR versions 0.1.8 dated 2021-01-05 and 0.1.9 dated 2022-12-17
DESCRIPTION | 12 MD5 | 46 - NAMESPACE | 1 NEWS.md | 72 ++ R/FLs.R | 3 R/Radial_plot.R | 20 R/URs.R | 30 R/ethnoChord.R | 8 R/ethno_alluvial.R | 16 R/ethno_boot.R | 20 README.md | 36 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/ethnobotanyR_modeling_vignette.R |only inst/doc/ethnobotanyR_modeling_vignette.Rmd |only inst/doc/ethnobotanyR_modeling_vignette.html |only inst/doc/ethnobotanyr_vignette.R | 94 --- inst/doc/ethnobotanyr_vignette.Rmd | 174 ----- inst/doc/ethnobotanyr_vignette.html | 825 +++++++++++++++------------ man/Radial_plot.Rd | 8 man/URs.Rd | 6 man/ethno_alluvial.Rd | 4 man/ethno_boot.Rd | 20 vignettes/ethnobotanyR_modeling_vignette.Rmd |only vignettes/ethnobotanyr_vignette.Rmd | 174 ----- vignettes/references/Ethnobotany.bib | 17 26 files changed, 723 insertions(+), 863 deletions(-)
Title: Stepwise Regression Analysis
Description: Three most common types of stepwise regression including linear regression, logistic regression and cox proportional hazard regression can be performed to select best model with methods of forward selection, backward elimination, bidirectional selection and best subset selection. A widely used selection criteria are available for variable selection.
Author: Junhui Li,Xiaohuan Lu,Kun Cheng,Wenxin Liu
Maintainer: Junhui Li <junhuili@cau.edu.cn>
Diff between StepReg versions 1.4.3 dated 2022-01-14 and 1.4.4 dated 2022-12-17
DESCRIPTION | 16 LICENSE |only MD5 | 29 + NAMESPACE | 6 R/modelFitStat.R | 229 ++++++------- R/print.StepReg.R |only R/stepwise.R | 894 +++++++++++++++++++++++++-------------------------- R/stepwiseCox.R | 801 ++++++++++++++++++++++----------------------- R/stepwiseLogit.R | 808 +++++++++++++++++++++++----------------------- README.md |only build |only inst |only man/figures |only man/print.StepReg.Rd |only man/stepwise.Rd | 8 man/stepwiseCox.Rd | 15 man/stepwiseLogit.Rd | 8 vignettes |only 18 files changed, 1413 insertions(+), 1401 deletions(-)
Title: Google Traffic
Description: Create geographically referenced traffic data from the Google Maps JavaScript API <https://developers.google.com/maps/documentation/javascript/examples/layer-traffic>.
Author: Robert Marty [aut, cre]
Maintainer: Robert Marty <rmarty@worldbank.org>
Diff between googletraffic versions 0.1.0 dated 2022-11-09 and 0.1.1 dated 2022-12-17
DESCRIPTION | 9 +- MD5 | 38 ++++++------ NAMESPACE | 2 NEWS.md | 7 ++ R/gt_html_to_raster.R | 15 +++- R/gt_load_png_as_traffic_raster.R | 106 +++++++++++++++++++++-------------- R/gt_make_extent.R | 2 R/gt_make_grid.R | 2 R/gt_make_html.R | 2 R/gt_make_png.R | 15 +++- R/gt_make_raster.R | 23 +++++-- R/gt_make_raster_from_grid.R | 17 ++++- R/gt_make_raster_from_polygon.R | 19 ++++-- README.md | 17 ++++- man/gt_load_png_as_traffic_raster.Rd | 23 ++++++- man/gt_make_grid.Rd | 2 man/gt_make_png.Rd | 16 +++-- man/gt_make_raster.Rd | 20 +++++- man/gt_make_raster_from_grid.Rd | 18 +++++ man/gt_make_raster_from_polygon.Rd | 20 +++++- 20 files changed, 266 insertions(+), 107 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-05-31 0.1.7
Title: Access Vegetation Databases and Treat Taxonomy
Description: Handling of vegetation data from different sources (
Turboveg 2.0 <https://www.synbiosys.alterra.nl/turboveg/>;
the German national repository <https://www.vegetweb.de> and others.
Taxonomic harmonization (given appropriate taxonomic lists,
e.g. the German taxonomic standard list "GermanSL", <https://germansl.infinitenature.org>).
Author: Florian Jansen <florian.jansen@uni-rostock.de>
Maintainer: Florian Jansen <florian.jansen@uni-rostock.de>
Diff between vegdata versions 0.9.11.3 dated 2022-06-17 and 0.9.11.4 dated 2022-12-17
DESCRIPTION | 7 MD5 | 68 +++---- NAMESPACE | 4 R/data.R | 5 R/db_download.R | 11 + R/tax.names.R | 417 +++++++++++++++++++++++++++--------------------- R/tax.r | 26 +- R/tax.reflist.r | 45 +---- R/zzz.R | 1 inst/ChangeLog | 6 inst/doc/vegdata.R | 1 inst/doc/vegdata.Rnw | 2 inst/doc/vegdata.pdf |binary man/child.Rd | 8 man/cwm.Rd | 2 man/db_download.Rd | 8 man/lc.0.Rd | 6 man/lc.1.Rd | 6 man/lc.all.Rd | 4 man/parent.Rd | 8 man/sql_collect.Rd | 8 man/src_vegdata.Rd | 4 man/syn.Rd | 8 man/tax.Rd | 8 man/taxlevels.Rd | 8 man/taxname.simpl.Rd | 5 man/taxval.Rd | 4 man/tdb_cache.Rd | 25 +- man/tv.bib.Rd | 2 man/tv.metadata.Rd | 4 man/tv.site.Rd | 2 man/tv.veg.Rd | 6 man/tv.write.Rd | 4 man/vegdata-internal.Rd | 4 vignettes/vegdata.Rnw | 2 35 files changed, 396 insertions(+), 333 deletions(-)
Title: Generalized Linear Latent Variable Models
Description: Analysis of multivariate data using generalized linear latent variable models (gllvm).
Estimation is performed using either Laplace approximation method or variational approximation method implemented via TMB (Kristensen et al., (2016), <doi:10.18637/jss.v070.i05>).
For details see Niku et al. (2019a) <doi:10.1371/journal.pone.0216129> and
Niku et al. (2019b) <doi:10.1111/2041-210X.13303>.
Author: Jenni Niku [aut, cre],
Wesley Brooks [aut],
Riki Herliansyah [aut],
Francis K.C. Hui [aut],
Pekka Korhonen [aut],
Sara Taskinen [aut],
Bert van der Veen [aut],
David I. Warton [aut]
Maintainer: Jenni Niku <jenni.m.e.niku@jyu.fi>
Diff between gllvm versions 1.3.1 dated 2021-07-28 and 1.4.0 dated 2022-12-17
DESCRIPTION | 26 MD5 | 118 +- NAMESPACE | 15 NEWS.md | 101 ++ R/TMBtrait.R | 749 ++++++++++++++-- R/aicc.gllvm.R | 12 R/anova.gllvm.R | 123 -- R/coefplot.gllvm.R | 68 + R/confint.gllvm.R | 68 - R/ecoCoefs.gllvm.R | 2 R/getLV.gllvm.R | 83 + R/getPredictErr.gllvm.R | 151 ++- R/getResidualCov.gllvm.R | 8 R/gllvm.R | 522 +++++++++-- R/gllvm.TMB.R | 1397 +++++++++++++++++++++++++++---- R/gllvm.auxiliary.R | 793 +++++++++++++---- R/gllvm.makeform.R | 6 R/logLik.gllvm.R | 26 R/ordiplot.gllvm.R | 486 ++++++++-- R/plot.gllvm.R | 126 +- R/predict.gllvm.R | 391 +++++--- R/residuals.gllvm.R | 39 R/se.gllvm.R | 258 ++++- R/simulate.gllvm.R | 8 R/summary.gllvm.R | 122 +- R/vcov.gllvm.R | 13 build |only data/Skabbholmen.RData |only data/eSpider.RData |only inst/CITATION | 54 + inst/doc |only man/Skabbholmen.Rd |only man/anova.gllvm.Rd | 8 man/coefplot.gllvm.Rd | 9 man/confint.gllvm.Rd | 1 man/eSpider.Rd |only man/getLV.gllvm.Rd | 15 man/getPredictErr.gllvm.Rd | 6 man/gllvm.Rd | 161 ++- man/logLik.gllvm.Rd | 1 man/ordiplot.gllvm.Rd | 38 man/predict.gllvm.Rd | 7 man/summary.gllvm.Rd | 10 man/vcov.gllvm.Rd | 4 src/distrib.h |only src/gllvm.cpp | 1831 ++++++++++++++++++++++++++++++++--------- tests/testthat/test-fitgllvm.R | 48 - vignettes |only 48 files changed, 6145 insertions(+), 1759 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization. SWU.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.9.8 dated 2022-11-16 and 3.9.9 dated 2022-12-17
DESCRIPTION | 8 +++---- MD5 | 52 ++++++++++++++++++++++++------------------------ NAMESPACE | 3 ++ NEWS.md | 15 ++++++++++++- R/Ops.band_group.R | 6 +++++ R/Ops.global_group.R | 6 +++++ R/Ops.local_group.R | 2 - R/classColorTable.R | 16 +++++++++----- R/conn.write_gdal.R | 3 ++ R/identify.R | 4 +++ R/package_sf.R | 49 +++++++++++++++++++++++++++++++++++++++++++++ R/package_terra.R |only R/panel_new.R | 10 +++++++-- R/polygonize.R | 9 +++++++- R/spatial_write.R | 20 ++++++++++++++---- R/ursa_as.R | 2 - R/xxx.gdalwarp.R | 5 +++- R/xxx.panel_cluster.R | 15 +++++++++++-- R/xxx.spatialize.R | 9 +++++++- R/yyy.cache.R | 14 ++++++++++++ R/yyy.crop.R | 9 ++++++-- R/yyy.project.R | 33 +++++++++++++++++++----------- man/Ops.band_group.Rd | 7 ++++++ man/Ops.global_group.Rd | 11 ++++++---- man/package_sf.Rd |only man/panel_raster.Rd | 7 +++--- man/spatial_engine.Rd | 4 +-- src/ursa.c | 22 ++++++++++++++------ 28 files changed, 261 insertions(+), 80 deletions(-)
Title: Rendering Font into 'data.frame'
Description: Extract glyph information from font data, and translate the
outline curves to flattened paths or tessellated polygons. The converted
data is returned as a 'data.frame' in easy-to-plot format.
Author: Hiroaki Yutani [aut, cre] ,
The authors of the dependency Rust crates [ctb]
Maintainer: Hiroaki Yutani <yutani.ini@gmail.com>
Diff between string2path versions 0.1.1 dated 2022-08-06 and 0.1.2 dated 2022-12-17
string2path-0.1.1/string2path/src/Makevars.ucrt |only string2path-0.1.2/string2path/DESCRIPTION | 23 string2path-0.1.2/string2path/MD5 | 17 string2path-0.1.2/string2path/NEWS.md | 5 string2path-0.1.2/string2path/configure | 24 string2path-0.1.2/string2path/configure.win | 24 string2path-0.1.2/string2path/src/Makevars.in | 2 string2path-0.1.2/string2path/src/Makevars.win.in | 22 string2path-0.1.2/string2path/tests/testthat/_snaps/snapshot.md | 3 string2path-0.1.2/string2path/tools/configure.R | 292 ---------- 10 files changed, 41 insertions(+), 371 deletions(-)
Title: Monte Carlo Confidence Intervals in Structural Equation Modeling
Description: Monte Carlo confidence intervals for free and defined parameters
in models fitted in the structural equation modeling package 'lavaan'
can be generated using the 'semmcci' package.
'semmcci' has two main functions, namely, MC() and MCStd().
The output of 'lavaan' is passed as the first argument
to the MC() function to generate Monte Carlo confidence intervals.
Monte Carlo confidence intervals for the standardized estimates
can also be generated by passing the output of the MC() function
to the MCStd() function.
Preacher and Selig (2012) <doi:10.1080/19312458.2012.679848>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
,
Shu Fai Cheung [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between semmcci versions 1.0.3 dated 2022-10-16 and 1.0.4 dated 2022-12-17
semmcci-1.0.3/semmcci/R/semmcci-mvn-chol-dot.R |only semmcci-1.0.3/semmcci/R/semmcci-mvn-eigen-dot.R |only semmcci-1.0.3/semmcci/R/semmcci-mvn-svd-dot.R |only semmcci-1.0.3/semmcci/tests/testthat/test-semmcci-mvn.R |only semmcci-1.0.4/semmcci/DESCRIPTION | 8 semmcci-1.0.4/semmcci/MD5 | 70 ++-- semmcci-1.0.4/semmcci/NEWS.md |only semmcci-1.0.4/semmcci/R/randomGaussian-location-dot.R |only semmcci-1.0.4/semmcci/R/randomGaussian-random-gaussian-chol-dot.R |only semmcci-1.0.4/semmcci/R/randomGaussian-random-gaussian-eigen-dot.R |only semmcci-1.0.4/semmcci/R/randomGaussian-random-gaussian-svd-dot.R |only semmcci-1.0.4/semmcci/R/randomGaussian-random-gaussian-z-dot.R |only semmcci-1.0.4/semmcci/R/semmcci-mc-ci-dot.R | 12 semmcci-1.0.4/semmcci/R/semmcci-mc-std.R | 18 - semmcci-1.0.4/semmcci/R/semmcci-mc.R | 32 +- semmcci-1.0.4/semmcci/R/semmcci-methods.R | 30 + semmcci-1.0.4/semmcci/R/semmcci-pcci-dot.R | 3 semmcci-1.0.4/semmcci/R/semmcci-thetastar-dot.R | 152 ++-------- semmcci-1.0.4/semmcci/build/partial.rdb |binary semmcci-1.0.4/semmcci/man/MC.Rd | 34 +- semmcci-1.0.4/semmcci/man/MCStd.Rd | 20 - semmcci-1.0.4/semmcci/man/confint.semmcci.Rd | 6 semmcci-1.0.4/semmcci/man/confint.semmccistd.Rd | 6 semmcci-1.0.4/semmcci/man/print.semmcci.Rd | 3 semmcci-1.0.4/semmcci/man/print.semmccistd.Rd | 3 semmcci-1.0.4/semmcci/man/summary.semmcci.Rd | 3 semmcci-1.0.4/semmcci/man/summary.semmccistd.Rd | 3 semmcci-1.0.4/semmcci/man/vcov.semmcci.Rd | 3 semmcci-1.0.4/semmcci/man/vcov.semmccistd.Rd | 3 semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-latent-med-defined-none.R | 46 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-latent-med-defined.R | 46 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-latent-med-std-defined-none.R | 60 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-latent-med-std-defined.R | 30 - semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-defined-equality.R | 46 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-defined-inequality.R | 46 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-defined-none.R | 45 +- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-defined.R | 46 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-std-defined-none-random-x.R | 59 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-std-defined-none.R | 59 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-mc-simple-med-std-defined.R | 59 +-- semmcci-1.0.4/semmcci/tests/testthat/test-semmcci-npd.R | 21 - 41 files changed, 416 insertions(+), 556 deletions(-)
Title: Package Dependency Resolution and Downloads
Description: Find recursive dependencies of 'R' packages from various
sources. Solve the dependencies to obtain a consistent set of packages
to install. Download packages, and install them. It supports packages
on 'CRAN', 'Bioconductor' and other 'CRAN-like' repositories,
'GitHub', package 'URLs', and local package trees and files. It caches
metadata and package files via the 'pkgcache' package, and performs
all 'HTTP' requests, downloads, builds and installations in parallel.
'pkgdepends' is the workhorse of the 'pak' package.
Author: Gabor Csardi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pkgdepends versions 0.3.2 dated 2022-09-08 and 0.4.0 dated 2022-12-17
pkgdepends-0.3.2/pkgdepends/R/00assertthat.R |only pkgdepends-0.3.2/pkgdepends/R/pkgdepends-config.R |only pkgdepends-0.3.2/pkgdepends/R/unzip.R |only pkgdepends-0.3.2/pkgdepends/tests/testthat/_snaps/install-package.md |only pkgdepends-0.3.2/pkgdepends/tests/testthat/_snaps/install-parts.md |only pkgdepends-0.3.2/pkgdepends/tests/testthat/foo |only pkgdepends-0.3.2/pkgdepends/tests/testthat/test-install-package.R |only pkgdepends-0.3.2/pkgdepends/tests/testthat/test-install-parts.R |only pkgdepends-0.3.2/pkgdepends/tests/testthat/test-solve.R |only pkgdepends-0.4.0/pkgdepends/DESCRIPTION | 23 pkgdepends-0.4.0/pkgdepends/MD5 | 271 +++-- pkgdepends-0.4.0/pkgdepends/NAMESPACE | 14 pkgdepends-0.4.0/pkgdepends/R/aaa-rstudio-detect.R | 2 pkgdepends-0.4.0/pkgdepends/R/assertions.R | 270 +++-- pkgdepends-0.4.0/pkgdepends/R/assertthat.R |only pkgdepends-0.4.0/pkgdepends/R/compat-vctrs.R | 2 pkgdepends-0.4.0/pkgdepends/R/config.R | 502 +++++++++- pkgdepends-0.4.0/pkgdepends/R/dep-utils.R | 89 - pkgdepends-0.4.0/pkgdepends/R/docs.R |only pkgdepends-0.4.0/pkgdepends/R/download.R | 45 pkgdepends-0.4.0/pkgdepends/R/errors.R | 151 ++- pkgdepends-0.4.0/pkgdepends/R/files.R | 24 pkgdepends-0.4.0/pkgdepends/R/gh-app.R |only pkgdepends-0.4.0/pkgdepends/R/git-auth.R | 4 pkgdepends-0.4.0/pkgdepends/R/install-binary.R | 39 pkgdepends-0.4.0/pkgdepends/R/install-plan.R | 118 +- pkgdepends-0.4.0/pkgdepends/R/install-progress-bar.R | 9 pkgdepends-0.4.0/pkgdepends/R/install-tar.R | 21 pkgdepends-0.4.0/pkgdepends/R/install-utils.R | 9 pkgdepends-0.4.0/pkgdepends/R/install-zip.R | 2 pkgdepends-0.4.0/pkgdepends/R/integrity.R | 2 pkgdepends-0.4.0/pkgdepends/R/name-check.R | 15 pkgdepends-0.4.0/pkgdepends/R/onload.R | 4 pkgdepends-0.4.0/pkgdepends/R/parse-remotes.R | 28 pkgdepends-0.4.0/pkgdepends/R/pkg-installation.R | 4 pkgdepends-0.4.0/pkgdepends/R/pkg-lockfile.R | 16 pkgdepends-0.4.0/pkgdepends/R/pkg-plan.R | 14 pkgdepends-0.4.0/pkgdepends/R/pkgdepends-errors.R |only pkgdepends-0.4.0/pkgdepends/R/pkgdepends.R | 4 pkgdepends-0.4.0/pkgdepends/R/rematch2.R | 2 pkgdepends-0.4.0/pkgdepends/R/resolution-df.R | 36 pkgdepends-0.4.0/pkgdepends/R/resolution-progress-bar.R | 6 pkgdepends-0.4.0/pkgdepends/R/resolution.R | 101 -- pkgdepends-0.4.0/pkgdepends/R/snapshot.R |only pkgdepends-0.4.0/pkgdepends/R/solve.R | 142 ++ pkgdepends-0.4.0/pkgdepends/R/sysreqs.R | 16 pkgdepends-0.4.0/pkgdepends/R/tree.R | 34 pkgdepends-0.4.0/pkgdepends/R/type-any.R | 4 pkgdepends-0.4.0/pkgdepends/R/type-bioc.R | 43 pkgdepends-0.4.0/pkgdepends/R/type-cran.R | 12 pkgdepends-0.4.0/pkgdepends/R/type-github.R | 55 - 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Title: Kernel SHAP
Description: Multidimensional refinement of the Kernel SHAP algorithm
described in Ian Covert and Su-In Lee (2021)
<http://proceedings.mlr.press/v130/covert21a>. The package allows to
calculate Kernel SHAP values in an exact way, by iterative sampling
(as in the reference above), or by a hybrid of the two. As soon as
sampling is involved, the algorithm iterates until convergence, and
standard errors are provided. The package works with any model that
provides numeric predictions of dimension one or higher. Examples
include linear regression, logistic regression (on logit or
probability scale), other generalized linear models, generalized
additive models, and neural networks. The package plays well together
with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.3.1 dated 2022-11-18 and 0.3.2 dated 2022-12-17
kernelshap-0.3.1/kernelshap/man/figures/README-caret-waterfall.svg |only kernelshap-0.3.1/kernelshap/man/figures/README-glm-dep.svg |only kernelshap-0.3.1/kernelshap/man/figures/README-glm-waterfall.svg |only kernelshap-0.3.1/kernelshap/man/figures/README-mlr3-dep.svg |only kernelshap-0.3.1/kernelshap/man/figures/README-nn-waterfall.svg |only kernelshap-0.3.2/kernelshap/DESCRIPTION | 6 kernelshap-0.3.2/kernelshap/MD5 | 29 kernelshap-0.3.2/kernelshap/NEWS.md | 12 kernelshap-0.3.2/kernelshap/R/exact.R | 2 kernelshap-0.3.2/kernelshap/R/kernelshap.R | 72 kernelshap-0.3.2/kernelshap/README.md | 320 -- kernelshap-0.3.2/kernelshap/man/figures/README-lm-dep.svg | 1387 +++++++-- kernelshap-0.3.2/kernelshap/man/figures/README-lm-imp.svg | 256 - kernelshap-0.3.2/kernelshap/man/figures/README-lm-waterfall.svg | 507 +-- kernelshap-0.3.2/kernelshap/man/figures/README-nn-dep.svg | 1524 ++++++++-- kernelshap-0.3.2/kernelshap/man/figures/README-nn-imp.svg | 341 +- kernelshap-0.3.2/kernelshap/man/figures/README-rf-dep.svg |only kernelshap-0.3.2/kernelshap/man/figures/README-rf-imp.jpeg |only kernelshap-0.3.2/kernelshap/man/kernelshap.Rd | 60 19 files changed, 3119 insertions(+), 1397 deletions(-)
Title: Robust Confidence Intervals for Standardized Regression
Coefficients
Description: Generates robust confidence intervals for standardized regression coefficients
using heteroskedasticity-consistent standard errors for models fitted by lm()
as described in Dudgeon (2017) <doi:10.1007/s11336-017-9563-z>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between betaSandwich versions 1.0.2 dated 2022-10-07 and 1.0.3 dated 2022-12-17
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Title: Optimal Test Design Approach to Fixed and Adaptive Test
Construction
Description: Uses the optimal test design approach by Birnbaum (1968, ISBN:9781593119348) and
van der Linden (2018) <doi:10.1201/9781315117430> to construct fixed, adaptive, and parallel tests.
Supports the following mixed-integer programming (MIP) solver packages: 'Rsymphony',
'gurobi', 'lpSolve', and 'Rglpk'. The 'gurobi' package is not available from CRAN; see <https://www.gurobi.com/downloads/>.
Author: Seung W. Choi [aut, cre] ,
Sangdon Lim [aut]
Maintainer: Seung W. Choi <schoi@austin.utexas.edu>
Diff between TestDesign versions 1.3.4 dated 2022-07-22 and 1.4.0 dated 2022-12-17
TestDesign-1.3.4/TestDesign/R/cpp_documents.R |only TestDesign-1.3.4/TestDesign/man/theta_EAP_matrix.Rd |only TestDesign-1.3.4/TestDesign/man/theta_FB_single.Rd |only TestDesign-1.4.0/TestDesign/DESCRIPTION | 23 TestDesign-1.4.0/TestDesign/MD5 | 114 ++- TestDesign-1.4.0/TestDesign/NAMESPACE | 5 TestDesign-1.4.0/TestDesign/NEWS.md | 13 TestDesign-1.4.0/TestDesign/R/RcppExports.R | 47 - TestDesign-1.4.0/TestDesign/R/bayes_functions.R | 173 ++++-- TestDesign-1.4.0/TestDesign/R/cpp_calc_documents.r |only TestDesign-1.4.0/TestDesign/R/cpp_core_documents.r |only TestDesign-1.4.0/TestDesign/R/cpp_theta_documents.r |only TestDesign-1.4.0/TestDesign/R/import.R | 3 TestDesign-1.4.0/TestDesign/R/other_functions.R | 164 ----- TestDesign-1.4.0/TestDesign/R/partitioning_functions.r | 2 TestDesign-1.4.0/TestDesign/R/plot_functions.R | 39 + TestDesign-1.4.0/TestDesign/R/shadow_class.R | 23 TestDesign-1.4.0/TestDesign/R/shadow_functions.R | 212 +------ TestDesign-1.4.0/TestDesign/R/shadowtest_functions.R | 163 +++++ TestDesign-1.4.0/TestDesign/R/solver_functions.R | 81 +- TestDesign-1.4.0/TestDesign/R/static_class.R | 12 TestDesign-1.4.0/TestDesign/R/theta_functions.R | 286 +++++----- TestDesign-1.4.0/TestDesign/build/vignette.rds |binary TestDesign-1.4.0/TestDesign/inst/doc/constraints.html | 14 TestDesign-1.4.0/TestDesign/inst/doc/rsymphony.Rmd | 2 TestDesign-1.4.0/TestDesign/inst/doc/rsymphony.html | 16 TestDesign-1.4.0/TestDesign/inst/doc/split.html | 124 ++-- TestDesign-1.4.0/TestDesign/inst/shiny/global.r | 2 TestDesign-1.4.0/TestDesign/inst/shiny/server.r | 4 TestDesign-1.4.0/TestDesign/man/Split-methods.Rd | 2 TestDesign-1.4.0/TestDesign/man/calc_info.Rd | 26 TestDesign-1.4.0/TestDesign/man/calc_likelihood.Rd | 20 TestDesign-1.4.0/TestDesign/man/createShadowTestConfig.Rd | 8 TestDesign-1.4.0/TestDesign/man/createStaticTestConfig.Rd | 6 TestDesign-1.4.0/TestDesign/man/detectBestSolver.Rd |only TestDesign-1.4.0/TestDesign/man/e_item.Rd | 2 TestDesign-1.4.0/TestDesign/man/find_segment.Rd | 8 TestDesign-1.4.0/TestDesign/man/h_item.Rd | 4 TestDesign-1.4.0/TestDesign/man/info_item.Rd | 32 - TestDesign-1.4.0/TestDesign/man/iparPosteriorSample.Rd | 15 TestDesign-1.4.0/TestDesign/man/j_item.Rd | 2 TestDesign-1.4.0/TestDesign/man/lnHyperPars.Rd | 19 TestDesign-1.4.0/TestDesign/man/logitHyperPars.Rd | 19 TestDesign-1.4.0/TestDesign/man/p_item.Rd | 32 - TestDesign-1.4.0/TestDesign/man/testSolver.Rd | 2 TestDesign-1.4.0/TestDesign/man/theta_EAP.Rd | 69 ++ TestDesign-1.4.0/TestDesign/man/theta_EB.Rd | 54 - TestDesign-1.4.0/TestDesign/man/theta_FB.Rd | 55 + TestDesign-1.4.0/TestDesign/src/RcppExports.cpp | 4 TestDesign-1.4.0/TestDesign/src/theta_functions.cpp | 79 +- TestDesign-1.4.0/TestDesign/src/theta_functions.h | 4 TestDesign-1.4.0/TestDesign/tests/testthat/test-gfi.R | 4 TestDesign-1.4.0/TestDesign/tests/testthat/test-refresh-methods.R | 12 TestDesign-1.4.0/TestDesign/tests/testthat/test-selection-methods.R | 10 TestDesign-1.4.0/TestDesign/tests/testthat/test-theta-methods.R | 6 TestDesign-1.4.0/TestDesign/tests/testthat/test_excluding.R | 5 TestDesign-1.4.0/TestDesign/tests/testthat/test_exposure_methods.R | 14 TestDesign-1.4.0/TestDesign/tests/testthat/test_include_items_for_estimation.R |only TestDesign-1.4.0/TestDesign/tests/testthat/test_partitioning_methods.r | 7 TestDesign-1.4.0/TestDesign/tests/testthat/test_setbased_adaptive.r | 5 TestDesign-1.4.0/TestDesign/tests/testthat/test_static.R | 77 +- TestDesign-1.4.0/TestDesign/vignettes/rsymphony.Rmd | 2 62 files changed, 1117 insertions(+), 1009 deletions(-)
Title: End-to-End Automated Machine Learning and Model Evaluation
Description: Single unified interface for end-to-end modelling of regression,
categorical and time-to-event (survival) outcomes. Models created using
familiar are self-containing, and their use does not require additional
information such as baseline survival, feature clustering, or feature
transformation and normalisation parameters. Model performance,
calibration, risk group stratification, (permutation) variable importance,
individual conditional expectation, partial dependence, and more, are
assessed automatically as part of the evaluation process and exported in
tabular format and plotted, and may also be computed manually using export
and plot functions. Where possible, metrics and values obtained during the
evaluation process come with confidence intervals.
Author: Alex Zwanenburg [aut, cre] ,
Steffen Loeck [aut],
Stefan Leger [ctb],
Iram Shahzadi [ctb],
Asier Rabasco Meneghetti [ctb],
Sebastian Starke [ctb],
Technische Universitaet Dresden [cph],
German Cancer Research Center [cph]
Maintainer: Alex Zwanenburg <alexander.zwanenburg@nct-dresden.de>
Diff between familiar versions 1.4.0 dated 2022-11-23 and 1.4.1 dated 2022-12-17
DESCRIPTION | 8 MD5 | 183 - NEWS.md | 30 R/CombatNormalisation.R | 14 R/Evaluation.R | 115 R/Familiar.R | 3 R/FamiliarCollection.R | 170 - R/FamiliarDataComputationCalibrationData.R | 1401 +++++---- R/FamiliarDataComputationICE.R | 3 R/FamiliarDataComputationRiskStratificationData.R | 30 R/FamiliarDataElement.R | 680 ++-- R/FeatureInfo.R | 32 R/Normalisation.R | 123 R/ParseSettings.R | 619 ++-- R/PlotAUCcurves.R | 37 R/PlotCalibration.R | 20 R/PlotConfusionMatrix.R | 44 R/PlotDecisionCurves.R | 54 R/PlotFeatureRanking.R | 58 R/PlotFeatureSimilarity.R | 43 R/PlotICE.R | 54 R/PlotKaplanMeier.R | 1547 +++++----- R/PlotModelPerformance.R | 62 R/PlotPermutationVariableImportance.R | 55 R/PlotSampleClustering.R | 52 R/PlotUnivariateImportance.R | 39 R/PlotUtilities.R | 168 - R/TestFunctions.R | 169 - R/Transformation.R | 396 ++ R/Utilities.R | 104 inst/config.xml | 4 inst/doc/evaluation_and_explanation_precompiled.Rmd | 3 inst/doc/evaluation_and_explanation_precompiled.html | 49 inst/doc/feature_selection_precompiled.Rmd | 2 inst/doc/feature_selection_precompiled.html | 4 inst/doc/introduction_precompiled.Rmd | 2 inst/doc/introduction_precompiled.html | 4 inst/doc/learners_precompiled.Rmd | 2 inst/doc/learners_precompiled.html | 4 inst/doc/performance_metrics_precompiled.Rmd | 2 inst/doc/performance_metrics_precompiled.html | 4 inst/doc/prospective_use_precompiled.Rmd | 238 - inst/doc/prospective_use_precompiled.html | 292 - man/dot-parse_general_settings.Rd | 25 man/dot-parse_preprocessing_settings.Rd | 25 man/precompute_data_assignment.Rd | 23 man/precompute_feature_info.Rd | 23 man/precompute_vimp.Rd | 23 man/set_class_names-familiarCollection-method.Rd | 29 man/set_data_set_names-familiarCollection-method.Rd | 28 man/set_feature_names-familiarCollection-method.Rd | 30 man/set_fs_method_names-familiarCollection-method.Rd | 32 man/set_learner_names-familiarCollection-method.Rd | 31 man/set_risk_group_names-familiarCollection-method.Rd | 30 man/summon_familiar.Rd | 25 man/train_familiar.Rd | 23 tests/testthat/test-collection_labels.R |only tests/testthat/test-learner_glm_S4.R | 5 tests/testthat/test-learner_glmnet_S4.R | 16 tests/testthat/test-learner_xgboost_lm_S4.R | 10 tests/testthat/test-plot_kaplan_meier_curve.R | 74 tests/testthat/test-transformation.R | 966 +++--- vignettes/eval_and_explain/auc-pr-curve-bci-1.png |binary vignettes/eval_and_explain/auc-pr-curve-point-1.png |binary vignettes/eval_and_explain/auc-roc-curve-bci-1.png |binary vignettes/eval_and_explain/auc-roc-curve-point-1.png |binary vignettes/eval_and_explain/calibration-data-bci-1.png |binary vignettes/eval_and_explain/calibration-data-point-1.png |binary vignettes/eval_and_explain/decision-curve-bci-1.png |binary vignettes/eval_and_explain/feature-similarity-1.png |binary vignettes/eval_and_explain/ice-2d-1.png |binary vignettes/eval_and_explain/ice-2d-anchored-1.png |binary vignettes/eval_and_explain/ice-cell-shap-uniformity-1.png |binary vignettes/eval_and_explain/ice-cell-shape-uniformity-anchored-1.png |binary vignettes/eval_and_explain/kaplan-meier-plot-1.png |binary vignettes/eval_and_explain/model-performance-plot-1.png |binary vignettes/eval_and_explain/model-variable-importance-1.png |binary vignettes/eval_and_explain/permutation-variable-importance-bc-1.png |binary vignettes/eval_and_explain/permutation-variable-importance-bc-spearman-1.png |binary vignettes/eval_and_explain/sample-similarity-1.png |binary vignettes/eval_and_explain/sample-similarity-unnormalised-1.png |binary vignettes/evaluation_and_explanation_precompiled.Rmd | 3 vignettes/feature_selection_precompiled.Rmd | 2 vignettes/introduction_precompiled.Rmd | 2 vignettes/learners_precompiled.Rmd | 2 vignettes/performance_metrics_precompiled.Rmd | 2 vignettes/prospective_use/prospective-auc_roc-plot-1.png |binary vignettes/prospective_use/prospective-auc_roc-plot-from-exported-collection-1.png |binary vignettes/prospective_use/prospective-model-performance-plot-1.png |binary vignettes/prospective_use/prospective-model-performance-plot-ensemble-1.png |binary vignettes/prospective_use/prospective-model-performance-plot-implicit-1.png |binary vignettes/prospective_use/prospective-model-performance-plot-new-directory-1.png |binary vignettes/prospective_use_precompiled.Rmd | 238 - 93 files changed, 4993 insertions(+), 3597 deletions(-)
Title: Calculate Diversity and Segregation Indices
Description: Implements common measures of diversity and spatial segregation. This package has tools to compute the majority of measures are reviewed in Massey and Denton (1988) <doi:10.2307/2579183>. Multiple common measures of within-geography diversity are implemented as well. All functions operate on data frames with a 'tidyselect' based workflow.
Author: Christopher T. Kenny [aut, cre]
Maintainer: Christopher T. Kenny <christopherkenny@fas.harvard.edu>
Diff between divseg versions 0.0.4 dated 2021-08-09 and 0.0.5 dated 2022-12-17
DESCRIPTION | 16 - MD5 | 131 +++++++-------- NAMESPACE | 6 NEWS.md |only R/abs_cent.R | 154 +++++++++--------- R/abs_clust.R | 160 +++++++++---------- R/abs_conc.R | 152 +++++++++--------- R/atkinson.R | 140 ++++++++-------- R/blau.R | 92 +++++------ R/correlation.R | 128 +++++++-------- R/dd_interaction.R | 152 +++++++++--------- R/dd_isolation.R | 152 +++++++++--------- R/delta.R | 138 ++++++++-------- R/dissim.R | 128 +++++++-------- R/diversity.R | 104 ++++++------ R/divseg-package.R | 5 R/entropy.R | 130 +++++++-------- R/gini.R | 134 ++++++++-------- R/helpers.R | 292 +++++++++++++++++------------------ R/hhi.R | 94 +++++------ R/interaction.R | 126 +++++++-------- R/inv_simpson.R | 90 +++++----- R/isolation.R | 128 +++++++-------- R/perplexity.R | 14 - R/rel_cent.R | 160 +++++++++---------- R/rel_clust.R | 144 ++++++++--------- R/rel_conc.R | 164 +++++++++---------- R/reyni.R | 106 ++++++------ R/shannon.R | 94 +++++------ R/simpson.R | 14 - R/spat_prox.R | 150 ++++++++--------- R/utils-tidy-eval.R | 154 ++++++++++++------ README.md | 2 inst/CITATION | 2 man/ds_abs_cent.Rd | 2 man/ds_abs_clust.Rd | 2 man/ds_abs_conc.Rd | 2 man/ds_atkinson.Rd | 2 man/ds_blau.Rd | 2 man/ds_correlation.Rd | 2 man/ds_dd_interaction.Rd | 2 man/ds_dd_isolation.Rd | 2 man/ds_delta.Rd | 2 man/ds_dissim.Rd | 2 man/ds_diversity.Rd | 4 man/ds_entropy.Rd | 2 man/ds_gini.Rd | 2 man/ds_hhi.Rd | 4 man/ds_interaction.Rd | 2 man/ds_inv_simpson.Rd | 2 man/ds_isolation.Rd | 2 man/ds_rel_cent.Rd | 2 man/ds_rel_clust.Rd | 2 man/ds_rel_conc.Rd | 2 man/ds_reyni.Rd | 2 man/ds_shannon.Rd | 2 man/ds_spat_prox.Rd | 2 man/tidyeval.Rd | 117 +++++++++----- tests/testthat/test-abs_cent.R | 24 +- tests/testthat/test-abs_clust.R | 24 +- tests/testthat/test-abs_conc.R | 24 +- tests/testthat/test-dd_interaction.R | 40 ++-- tests/testthat/test-dd_isolation.R | 40 ++-- tests/testthat/test-delta.R | 40 ++-- tests/testthat/test-rel_clust.R | 24 +- tests/testthat/test-rel_conc.R | 24 +- tests/testthat/test-spat_prox.R | 24 +- 67 files changed, 2097 insertions(+), 1990 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.0.1 dated 2022-09-25 and 2.0.4 dated 2022-12-17
DESCRIPTION | 6 - MD5 | 52 ++++++------ NEWS.md | 6 + R/datasets.R | 4 README.md | 176 +++++++++++++++-------------------------- data/advantage_details.rda |binary data/advantage_movement.rda |binary data/boot_mapping.rda |binary data/castaway_details.rda |binary data/castaways.rda |binary data/challenge_description.rda |binary data/challenge_results.rda |binary data/confessionals.rda |binary data/jury_votes.rda |binary data/season_palettes.rda |binary data/season_summary.rda |binary data/tribe_colours.rda |binary data/tribe_mapping.rda |binary data/viewers.rda |binary data/vote_history.rda |binary inst |only man/challenge_results.Rd | 1 man/confessionals.Rd | 1 man/viewers.Rd | 1 24 files changed, 113 insertions(+), 134 deletions(-)
Title: An R Autograding Extension for Otter-Grader
Description: An R autograding extension for Otter-Grader (<https://otter-grader.readthedocs.io>). It supports
grading R scripts, R Markdown documents, and R Jupyter Notebooks.
Author: Christopher Pyles [aut, cre] ,
UC Berkeley Data Science Education Program [cph]
Maintainer: Christopher Pyles <cpyles@berkeley.edu>
Diff between ottr versions 1.2.0 dated 2022-07-05 and 1.3.0 dated 2022-12-17
DESCRIPTION | 12 +-- MD5 | 57 +++++++++----- R/GradingResults.R | 2 R/TestFileResult.R | 13 ++- R/check.R | 14 ++- R/check_collector.R |only R/execute_script.R | 16 ---- R/export.R | 52 +++++++++++-- R/grade_script.R | 20 ++--- R/run_autograder.R | 10 -- R/valid_syntax.R |only man/CheckCollector.Rd |only man/TestFileResult.Rd | 6 + man/collector_env.Rd |only man/collector_varname.Rd |only man/execute_script.Rd | 5 - man/export.Rd | 15 ++- man/get_collector.Rd |only man/grade_script.Rd | 5 - man/initialize_collector.Rd |only man/run_autograder.Rd | 5 - man/valid_syntax.Rd | 23 +++++ tests/testthat/files/integration_expected_results |only tests/testthat/files/integration_test_cases |only tests/testthat/test_GradingResults.R | 2 tests/testthat/test_TestFileResult.R | 27 ++++++ tests/testthat/test_check.R | 21 +++++ tests/testthat/test_check_collector.R |only tests/testthat/test_execute_script.R | 24 ++---- tests/testthat/test_export.R | 87 ++++++++++++++++++++-- tests/testthat/test_grade_script.R | 13 +-- tests/testthat/test_integration.R |only tests/testthat/test_run_autograder.R | 2 33 files changed, 308 insertions(+), 123 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-13 1.1.2
2022-04-19 1.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-26 5.7.4
2022-10-05 5.7.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-05 1.0.4
2022-04-23 1.0.3