Title: The Weyl Algebra
Description: A suite of routines for Weyl algebras. Notation follows
Coutinho (1995, ISBN 0-521-55119-6, "A Primer of Algebraic
D-Modules"). Uses 'disordR' discipline
(Hankin 2022 <doi:10.48550/ARXIV.2210.03856>). To cite
the package in publications, use Hankin
2022 <doi:10.48550/ARXIV.2212.09230>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between weyl versions 0.0-1 dated 2022-01-21 and 0.0-3 dated 2022-12-20
DESCRIPTION | 12 ++- MD5 | 57 +++++++------- R/weyl.R | 1 R/weyl_product.R | 7 + README.md | 30 ++++--- build/partial.rdb |binary build/vignette.rds |binary build/weyl.pdf |binary data/dot.rda |binary data/x_and_d.rda |binary inst/CITATION |only inst/doc/weyl.R | 41 +++++++++- inst/doc/weyl.Rmd | 172 +++++++++++++++++++++++++++++++++---------- inst/doc/weyl.html | 184 ++++++++++++++++++++++++++++++++++------------ inst/dot.Rmd |only inst/weyl_arxiv.Rnw |only inst/weyl_arxiv.bib |only man/coeffs.Rd | 3 man/constant.Rd | 2 man/degree.Rd | 5 + man/derivation.Rd | 4 - man/dim.Rd | 3 man/dot.Rd | 11 ++ man/grade.Rd | 6 - man/identity.Rd | 2 man/print.Rd | 48 ++++++++++-- man/weyl.Rd | 3 man/x_and_d.Rd | 7 + man/zero.Rd | 2 tests/testthat/test_aab.R | 2 vignettes/weyl.Rmd | 172 +++++++++++++++++++++++++++++++++---------- vignettes/weyl.bib |only 32 files changed, 576 insertions(+), 198 deletions(-)
Title: Multivariate Polynomials with Rational Coefficients
Description: Symbolic calculation and evaluation of multivariate
polynomials with rational coefficients. This package is strongly
inspired by the 'spray' package.
Author: Stephane Laurent [aut, cre],
Robin Hankin [ctb, cph]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between qspray versions 0.1.0 dated 2022-12-15 and 0.1.1 dated 2022-12-20
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/RcppExports.R | 4 ---- src/RcppExports.cpp | 10 ---------- src/qspray.cpp | 32 ++++++++++++++++---------------- 6 files changed, 29 insertions(+), 38 deletions(-)
Title: Utilities for Processing Posterior Samples Stored in
'mcmc.lists'
Description: The aim of 'postpack' is to provide the infrastructure for a standardized workflow for 'mcmc.list' objects.
These objects can be used to store output from models fitted with Bayesian inference using
'JAGS', 'WinBUGS', 'OpenBUGS', 'NIMBLE', 'Stan', or even custom MCMC algorithms. Although the 'coda' R package provides
some methods for these objects, it is somewhat limited in easily performing post-processing tasks for
specific nodes. Models are ever increasing in their complexity and the number of tracked nodes, and oftentimes
a user may wish to summarize/diagnose sampling behavior for only a small subset of nodes at a time
for a particular question or figure. Thus, many 'postpack' functions support performing tasks on a
subset of nodes, where the subset is specified with regular expressions. The functions in 'postpack'
streamline the extraction, summarization, and diagnostics of specific monitored nodes after model fitting.
Further, because there is rarely only ever one model under con [...truncated...]
Author: Ben Staton [aut, cre]
Maintainer: Ben Staton <statonbe@gmail.com>
Diff between postpack versions 0.5.3 dated 2021-06-02 and 0.5.4 dated 2022-12-20
DESCRIPTION | 11 MD5 | 22 - NEWS.md | 5 R/match_params.R | 4 inst/doc/example-mcmclists.html | 290 +++++++++++++++++++++++-- inst/doc/feature-overview.html | 463 +++++++++++++++++++++++++++++++++++----- inst/doc/multiple-models.R | 2 inst/doc/multiple-models.Rmd | 2 inst/doc/multiple-models.html | 257 ++++++++++++++++++++-- inst/doc/pattern-matching.html | 322 +++++++++++++++++++++++++-- man/match_params.Rd | 4 vignettes/multiple-models.Rmd | 2 12 files changed, 1245 insertions(+), 139 deletions(-)
Title: Methods for Graphical Models and Causal Inference
Description: Functions for causal structure
learning and causal inference using graphical models. The main algorithms
for causal structure learning are PC (for observational data without hidden
variables), FCI and RFCI (for observational data with hidden variables),
and GIES (for a mix of data from observational studies
(i.e. observational data) and data from experiments
involving interventions (i.e. interventional data) without hidden
variables). For causal inference the IDA algorithm, the Generalized
Backdoor Criterion (GBC), the Generalized Adjustment Criterion (GAC)
and some related functions are implemented. Functions for incorporating
background knowledge are provided.
Author: Markus Kalisch [aut, cre],
Alain Hauser [aut],
Martin Maechler [aut],
Diego Colombo [ctb],
Doris Entner [ctb],
Patrik Hoyer [ctb],
Antti Hyttinen [ctb],
Jonas Peters [ctb],
Nicoletta Andri [ctb],
Emilija Perkovic [ctb],
Preetam Nandy [ctb],
Philipp R [...truncated...]
Maintainer: Markus Kalisch <kalisch@stat.math.ethz.ch>
Diff between pcalg versions 2.7-7 dated 2022-10-04 and 2.7-8 dated 2022-12-20
DESCRIPTION | 8 ++-- MD5 | 10 ++--- build/partial.rdb |binary inst/NEWS.Rd | 91 +++++++++++++++++++++++++++++++++++++++++++++- inst/doc/vignette2018.pdf |binary tests/test_idaFast.R | 62 +++++++++++++++++-------------- 6 files changed, 134 insertions(+), 37 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates to be annotated
to express unspecified date components,
approximate or uncertain date components,
date ranges, and sets of dates.
This is useful for describing and analysing temporal information,
whether historical or recent, where date precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 0.3.1 dated 2022-07-21 and 0.3.3 dated 2022-12-20
messydates-0.3.1/messydates/inst/messydates_hexlogo.png |only messydates-0.3.1/messydates/man/figures/cheatsheet.pdf |only messydates-0.3.3/messydates/DESCRIPTION | 10 messydates-0.3.3/messydates/MD5 | 45 - messydates-0.3.3/messydates/NAMESPACE | 1 messydates-0.3.3/messydates/NEWS.md | 18 messydates-0.3.3/messydates/R/coerce_to_messydate.R | 148 +++- messydates-0.3.3/messydates/README.md | 2 messydates-0.3.3/messydates/inst/doc/messydates.R | 27 messydates-0.3.3/messydates/inst/doc/messydates.Rmd | 30 messydates-0.3.3/messydates/inst/doc/messydates.html | 369 ++++------ messydates-0.3.3/messydates/inst/figures |only messydates-0.3.3/messydates/man/annotate.Rd | 10 messydates-0.3.3/messydates/man/battles.Rd | 14 messydates-0.3.3/messydates/man/expand.Rd | 4 messydates-0.3.3/messydates/man/figures/cheatsheet.png |binary messydates-0.3.3/messydates/man/logical-class.Rd | 16 messydates-0.3.3/messydates/man/messydate.Rd | 44 - messydates-0.3.3/messydates/man/set.Rd | 8 messydates-0.3.3/messydates/tests/testthat/test-coerce-from.R | 3 messydates-0.3.3/messydates/tests/testthat/test-coerce-to.R | 13 messydates-0.3.3/messydates/tests/testthat/test-contract.R | 5 messydates-0.3.3/messydates/tests/testthat/test-expand.R | 2 messydates-0.3.3/messydates/tests/testthat/test-operate.R | 7 messydates-0.3.3/messydates/vignettes/messydates.Rmd | 30 25 files changed, 433 insertions(+), 373 deletions(-)
Title: Utility Functions for Statistical Analysis Report Generation and
Monte Carlo Studies
Description: Helper functions for creating formatted summary of regression models, writing publication-ready tables to latex files, and running Monte Carlo experiments.
Author: Youyi Fong [cre],
Krisztian Sebestyen [aut],
Han Sunwoo [aut],
Jason Becker [ctb],
Bendix Carstensen [ctb],
Daryl Morris [ctb],
Josh Pasek [ctb],
Dennis Chao [ctb],
Andri Signorell [ctb],
Sue Li [ctb],
Jonathan Bartlett [ctb],
Christophe Dutang [ctb]
Maintainer: Youyi Fong <youyifong@gmail.com>
Diff between kyotil versions 2022.9-17 dated 2022-10-07 and 2022.12-20 dated 2022-12-20
kyotil-2022.12-20/kyotil/DESCRIPTION | 6 ++-- kyotil-2022.12-20/kyotil/MD5 | 15 +++++------ kyotil-2022.12-20/kyotil/R/plotting.R | 7 ++--- kyotil-2022.12-20/kyotil/build/vignette.rds |binary kyotil-2022.12-20/kyotil/inst/doc/kyotil-vignette.pdf |binary kyotil-2022.12-20/kyotil/inst/unitTests/runit.kernel.R | 13 --------- kyotil-2022.12-20/kyotil/man/plotting.Rd | 19 ++++++++------ kyotil-2022.12-20/kyotil/man/predictCompetingRisk2.Rd | 9 +++++- kyotil-2022.9-17/kyotil/inst/doc/kyotil-vignette.pdf.asis |only 9 files changed, 33 insertions(+), 36 deletions(-)
Title: Extract Event Statistics in Hydrologic Time Series
Description: Events from individual hydrologic time series are extracted, and events from multiple time series can be matched to each other.
Tang, W. & Carey, S. K. (2017) <doi:10.1002/hyp.11185>.
Kaur, S., Horne, A., Stewardson, M.J., Nathan, R., Costa, A.M., Szemis, J.M., & Webb, J.A. (2017) <doi:10.1080/24705357.2016.1276418>.
Ladson, A., Brown, R., Neal, B., & Nathan, R. J. (2013) <doi:10.7158/W12-028.2013.17.1>.
Author: Conrad Wasko [aut, cre], Danlu Guo [aut]
Maintainer: Conrad Wasko <conrad.wasko@gmail.com>
Diff between hydroEvents versions 0.10 dated 2021-07-15 and 0.11 dated 2022-12-20
hydroEvents-0.10/hydroEvents/data/datalist |only hydroEvents-0.11/hydroEvents/DESCRIPTION | 14 - hydroEvents-0.11/hydroEvents/MD5 | 59 +++--- hydroEvents-0.11/hydroEvents/NAMESPACE | 37 +-- hydroEvents-0.11/hydroEvents/NEWS.md |only hydroEvents-0.11/hydroEvents/R/baseflowA.R | 8 hydroEvents-0.11/hydroEvents/R/baseflowB.R | 2 hydroEvents-0.11/hydroEvents/R/data.R | 12 - hydroEvents-0.11/hydroEvents/R/eventBaseflow.R | 126 ++++++------- hydroEvents-0.11/hydroEvents/R/eventMaxima.R | 2 hydroEvents-0.11/hydroEvents/R/eventMinima.R | 4 hydroEvents-0.11/hydroEvents/R/eventPOT.R | 15 + hydroEvents-0.11/hydroEvents/R/limbs.R | 210 ++++++++++------------ hydroEvents-0.11/hydroEvents/R/localMin.R | 3 hydroEvents-0.11/hydroEvents/R/pairEvents.R | 26 +- hydroEvents-0.11/hydroEvents/R/plotEvents.R | 39 ++-- hydroEvents-0.11/hydroEvents/R/plotPairs.R | 6 hydroEvents-0.11/hydroEvents/README.md |only hydroEvents-0.11/hydroEvents/man/WQ_Q.Rd | 6 hydroEvents-0.11/hydroEvents/man/baseflowA.Rd | 102 +++++----- hydroEvents-0.11/hydroEvents/man/baseflowB.Rd | 2 hydroEvents-0.11/hydroEvents/man/dataBassRiver.Rd | 2 hydroEvents-0.11/hydroEvents/man/data_P_WL.Rd | 4 hydroEvents-0.11/hydroEvents/man/eventBaseflow.Rd | 13 + hydroEvents-0.11/hydroEvents/man/eventMaxima.Rd | 2 hydroEvents-0.11/hydroEvents/man/eventMinima.Rd | 4 hydroEvents-0.11/hydroEvents/man/eventPOT.Rd | 106 +++++------ hydroEvents-0.11/hydroEvents/man/limbs.Rd | 39 ++-- hydroEvents-0.11/hydroEvents/man/localMin.Rd | 114 +++++------ hydroEvents-0.11/hydroEvents/man/pairEvents.Rd | 167 ++++++++--------- hydroEvents-0.11/hydroEvents/man/plotEvents.Rd | 152 +++++++-------- hydroEvents-0.11/hydroEvents/man/plotPairs.Rd | 148 +++++++-------- 32 files changed, 721 insertions(+), 703 deletions(-)
Title: Statistical Inference and Prediction of Annotations in
Phylogenetic Trees
Description: Implements a parsimonious evolutionary model to analyze and
predict gene-functional annotations in phylogenetic trees as described in Vega
Yon et al. (2021) <doi:10.1371/journal.pcbi.1007948>. With a focus on
computational efficiency, 'aphylo' makes it possible to estimate pooled
phylogenetic models, including thousands (hundreds) of annotations (trees) in
the same run. The package also provides the tools for visualization of
annotated phylogenies, calculation of posterior probabilities (prediction,)
and goodness-of-fit assessment featured in Vega Yon et al. (2021).
Author: George Vega Yon [aut, cre] ,
National Cancer Institute [fnd] ,
USC Biostatistics [cph]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between aphylo versions 0.3-1 dated 2022-12-20 and 0.3-2 dated 2022-12-20
DESCRIPTION | 6 +++--- MD5 | 4 ++-- src/TreeData.hpp | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Title: Manipulation of Microsoft Word and PowerPoint Documents
Description: Access and manipulate 'Microsoft Word' and 'Microsoft PowerPoint' documents from R.
The package focuses on tabular and graphical reporting from R; it also provides two functions
that let users get document content into data objects. A set of functions
lets add and remove images, tables and paragraphs of text in new or existing documents.
The package does not require any installation of Microsoft products to be able to write Microsoft
files.
Author: David Gohel [aut, cre],
Frank Hangler [ctb] ,
Liz Sander [ctb] ,
Anton Victorson [ctb] ,
Jon Calder [ctb] ,
John Harrold [ctb] ,
John Muschelli [ctb] ,
Bill Denney [ctb] ,
Nikolai Beck [ctb] ,
Stefan Moog [ctb] ,
Greg Leleu [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between officer versions 0.4.4 dated 2022-09-09 and 0.5.0 dated 2022-12-20
officer-0.4.4/officer/R/docx_footnotes.R |only officer-0.4.4/officer/R/docx_img.R |only officer-0.4.4/officer/tests/testthat/test-pptx-add-at.R |only officer-0.5.0/officer/DESCRIPTION | 11 officer-0.5.0/officer/MD5 | 139 +++--- officer-0.5.0/officer/NAMESPACE | 10 officer-0.5.0/officer/NEWS.md | 32 + officer-0.5.0/officer/R/core_properties.R | 10 officer-0.5.0/officer/R/custom_properties.R | 61 +- officer-0.5.0/officer/R/deprecated.R | 14 officer-0.5.0/officer/R/docx_add.R | 87 +-- officer-0.5.0/officer/R/docx_cursor.R | 221 ++++++++- officer-0.5.0/officer/R/docx_part.R | 201 --------- officer-0.5.0/officer/R/docx_replace.R | 170 ++++++- officer-0.5.0/officer/R/docx_section.R | 177 +++++-- officer-0.5.0/officer/R/docx_settings.R |only officer-0.5.0/officer/R/formatting_properties.R | 106 ++++ officer-0.5.0/officer/R/fortify_pptx.R | 4 officer-0.5.0/officer/R/ooxml_block_objects.R | 31 - officer-0.5.0/officer/R/ooxml_run_objects.R | 285 ++++++++++-- officer-0.5.0/officer/R/openxml_content_type.R | 10 officer-0.5.0/officer/R/post-proc.R |only officer-0.5.0/officer/R/ppt_classes.R | 19 officer-0.5.0/officer/R/ppt_ph_with_methods.R | 44 - officer-0.5.0/officer/R/pptx_slide_manip.R | 2 officer-0.5.0/officer/R/read_docx.R | 288 ++++++++----- officer-0.5.0/officer/R/read_docx_styles.R | 116 ++++- officer-0.5.0/officer/R/read_pptx.R | 14 officer-0.5.0/officer/R/utils.R | 45 -- officer-0.5.0/officer/README.md | 39 - officer-0.5.0/officer/man/body_add_gg.Rd | 4 officer-0.5.0/officer/man/body_add_plot.Rd | 6 officer-0.5.0/officer/man/body_add_xml.Rd | 2 officer-0.5.0/officer/man/body_set_default_section.Rd | 8 officer-0.5.0/officer/man/cursor.Rd | 66 ++ officer-0.5.0/officer/man/docx_current_block_xml.Rd |only officer-0.5.0/officer/man/docx_reference_img.Rd | 10 officer-0.5.0/officer/man/docx_set_character_style.Rd |only officer-0.5.0/officer/man/docx_set_paragraph_style.Rd |only officer-0.5.0/officer/man/external_img.Rd | 3 officer-0.5.0/officer/man/ftext.Rd | 3 officer-0.5.0/officer/man/hyperlink_ftext.Rd | 3 officer-0.5.0/officer/man/move_slide.Rd | 2 officer-0.5.0/officer/man/prop_section.Rd | 51 ++ officer-0.5.0/officer/man/read_docx.Rd | 3 officer-0.5.0/officer/man/read_pptx.Rd | 2 officer-0.5.0/officer/man/run_autonum.Rd | 3 officer-0.5.0/officer/man/run_bookmark.Rd | 3 officer-0.5.0/officer/man/run_columnbreak.Rd | 3 officer-0.5.0/officer/man/run_footnote.Rd | 3 officer-0.5.0/officer/man/run_footnoteref.Rd | 3 officer-0.5.0/officer/man/run_linebreak.Rd | 3 officer-0.5.0/officer/man/run_pagebreak.Rd | 3 officer-0.5.0/officer/man/run_reference.Rd | 3 officer-0.5.0/officer/man/run_word_field.Rd | 3 officer-0.5.0/officer/man/run_wordtext.Rd |only officer-0.5.0/officer/man/slip_in_footnote.Rd | 17 officer-0.5.0/officer/man/wml_link_images.Rd | 11 officer-0.5.0/officer/tests/testthat/test-block_list.R | 12 officer-0.5.0/officer/tests/testthat/test-docx-add.R | 101 +++- officer-0.5.0/officer/tests/testthat/test-docx-footnotes.R | 51 +- officer-0.5.0/officer/tests/testthat/test-docx-insert.R | 27 - officer-0.5.0/officer/tests/testthat/test-docx-misc.R | 186 ++++++-- officer-0.5.0/officer/tests/testthat/test-docx-styles.R |only officer-0.5.0/officer/tests/testthat/test-docx-table.R | 17 officer-0.5.0/officer/tests/testthat/test-fp-text-misc.R | 1 officer-0.5.0/officer/tests/testthat/test-hyperlinks.R |only officer-0.5.0/officer/tests/testthat/test-images.R |only officer-0.5.0/officer/tests/testthat/test-ppt-notes.R | 50 +- officer-0.5.0/officer/tests/testthat/test-pptx-add.R | 251 ++++++++++- officer-0.5.0/officer/tests/testthat/test-pptx-info.R | 32 + officer-0.5.0/officer/tests/testthat/test-pptx-misc.R | 1 officer-0.5.0/officer/tests/testthat/test-pptx-move.R | 4 officer-0.5.0/officer/tests/testthat/test-relationships.R | 1 officer-0.5.0/officer/tests/testthat/test-sections.R |only officer-0.5.0/officer/tests/testthat/test-xlsx.R | 17 officer-0.5.0/officer/tests/testthat/test-zip.R | 9 77 files changed, 2116 insertions(+), 998 deletions(-)
Title: Tools for HLA Data
Description: A streamlined tool for eplet analysis of donor and recipient HLA (human leukocyte antigen) mismatch. Messy, low-resolution HLA typing data is cleaned, and imputed to high-resolution using the NMDP (National Marrow Donor Program) haplotype reference database <https://haplostats.org/haplostats>. High resolution data is analyzed for overall or single antigen eplet mismatch using a reference table (currently supporting 'HLAMatchMaker' <http://www.epitopes.net> versions 2 and 3). Data can enter or exit the workflow at different points depending on the user's aims and initial data quality.
Author: Joan Zhang [aut, cre],
Aileen Johnson [aut],
Christian P Larsen [cph, aut]
Maintainer: Joan Zhang <joan.zhang@emory.edu>
Diff between hlaR versions 0.1.5 dated 2022-10-24 and 0.1.6 dated 2022-12-20
DESCRIPTION | 8 +- MD5 | 24 ++++---- R/eplet-MHC-II.R | 34 +++++------ R/globals.R | 2 R/utils.R | 119 ++++++++++++++++++++++++++--------------- build/vignette.rds |binary inst/doc/allele-haplotype.html | 13 ---- inst/doc/eplet-mm.R | 2 inst/doc/eplet-mm.Rmd | 2 inst/doc/eplet-mm.html | 10 +-- man/CalEpletMHCII.Rd | 1 man/utils.Rd | 8 +- vignettes/eplet-mm.Rmd | 2 13 files changed, 124 insertions(+), 101 deletions(-)
Title: Retrieve Archived Web Pages from the 'Internet Archive'
Description: Scraping content from archived web pages stored in
the 'Internet Archive' (<https://archive.org>) using a systematic
workflow. Get an overview of the mementos available from the
respective homepage, retrieve the Urls and links of the page and
finally scrape the content. The final output is stored in tibbles,
which can be then easily used for further analysis.
Author: Konstantin Gavras [aut] ,
Lukas Isermann [aut, cre]
Maintainer: Lukas Isermann <lukas.isermann@uni-mannheim.de>
Diff between archiveRetriever versions 0.2.0 dated 2022-06-21 and 0.3.0 dated 2022-12-20
DESCRIPTION | 10 MD5 | 17 NEWS.md | 8 R/retrieve_links.R | 71 README.md | 23 man/retrieve_links.Rd | 12 tests/fixtures/retrieve_links2.yml |only tests/fixtures/retrieve_links3.yml |only tests/fixtures/retrieve_links4.yml |only tests/fixtures/scrape_url6.yml |113769 +++++++++++++++++------------------ tests/testthat/test_retrieve_links.R | 87 11 files changed, 57003 insertions(+), 56994 deletions(-)
More information about archiveRetriever at CRAN
Permanent link
Title: The YUIMA Project Package for SDEs
Description: Simulation and Inference for SDEs and Other Stochastic Processes.
Author: YUIMA Project Team
Maintainer: Stefano M. Iacus <siacus@iq.harvard.edu>
Diff between yuima versions 1.15.18 dated 2022-12-05 and 1.15.22 dated 2022-12-20
DESCRIPTION | 7 ++++--- MD5 | 17 +++++++++-------- NEWS | 6 +++++- R/RcppExports.R | 4 ---- README.md |only man/noisy.sampling.Rd | 4 ++-- man/wllag.Rd | 4 ++-- src/RcppExports.cpp | 11 ----------- src/ae.cpp | 13 +------------ src/yuima_init.c | 2 -- 10 files changed, 23 insertions(+), 45 deletions(-)
Title: Text Mining using 'dplyr', 'ggplot2', and Other Tidy Tools
Description: Using tidy data principles can make many text mining tasks
easier, more effective, and consistent with tools already in wide use.
Much of the infrastructure needed for text mining with tidy data
frames already exists in packages like 'dplyr', 'broom', 'tidyr', and
'ggplot2'. In this package, we provide functions and supporting data
sets to allow conversion of text to and from tidy formats, and to
switch seamlessly between tidy tools and existing text mining
packages.
Author: Gabriela De Queiroz [ctb],
Colin Fay [ctb] ,
Emil Hvitfeldt [ctb],
Os Keyes [ctb] ,
Kanishka Misra [ctb],
Tim Mastny [ctb],
Jeff Erickson [ctb],
David Robinson [aut],
Julia Silge [aut, cre]
Maintainer: Julia Silge <julia.silge@gmail.com>
Diff between tidytext versions 0.3.4 dated 2022-08-19 and 0.4.0 dated 2022-12-20
DESCRIPTION | 20 MD5 | 119 +-- NEWS.md | 8 R/bind_tf_idf.R | 4 R/corpus_tidiers.R | 18 R/globals.R | 2 R/lda_tidiers.R | 18 R/mallet_tidiers.R | 26 R/nma_words.R | 4 R/parts_of_speech.R | 4 R/reorder_within.R | 20 R/sentiments.R | 10 R/sparse_casters.R | 16 R/stm_tidiers.R | 243 +++---- R/stop_words.R | 22 R/unnest_char.R | 2 R/unnest_ngrams.R | 2 R/unnest_ptb.R | 2 R/unnest_regex.R | 2 R/unnest_sentence.R | 2 R/unnest_tokens.R | 59 - R/unnest_tweets.R | 43 - README.md | 2 inst/doc/tf_idf.R | 7 inst/doc/tf_idf.Rmd | 8 inst/doc/tf_idf.html | 115 +-- inst/doc/tidying_casting.R | 9 inst/doc/tidying_casting.Rmd | 10 inst/doc/tidying_casting.html | 115 +-- inst/doc/tidytext.R | 8 inst/doc/tidytext.Rmd | 9 inst/doc/tidytext.html | 119 +-- man/bind_tf_idf.Rd | 2 man/cast_sparse.Rd | 4 man/corpus_tidiers.Rd | 2 man/document_term_casters.Rd | 4 man/get_sentiments.Rd | 2 man/get_stopwords.Rd | 9 man/mallet_tidiers.Rd | 12 man/reorder_within.Rd | 7 man/stm_tidiers.Rd | 144 +--- man/tidy.Corpus.Rd | 2 man/unnest_character.Rd | 10 man/unnest_ngrams.Rd | 14 man/unnest_ptb.Rd | 10 man/unnest_regex.Rd | 10 man/unnest_sentences.Rd | 10 man/unnest_tokens.Rd | 26 man/unnest_tweets.Rd | 60 - tests/testthat/_snaps/reorder-within/custom-label-boxplot.svg | 20 tests/testthat/_snaps/reorder-within/reordered-boxplot.svg | 20 tests/testthat/_snaps/reorder-within/reordered-multi-facet-boxplot.svg | 120 --- tests/testthat/_snaps/unnest-tokens.md | 9 tests/testthat/_snaps/unnest_tweet.md |only tests/testthat/test-reorder-within.R | 1 tests/testthat/test-stm-tidiers.R | 339 +++++----- tests/testthat/test-unnest-tokens.R | 19 tests/testthat/test-unnest_tweet.R | 10 vignettes/tf_idf.Rmd | 8 vignettes/tidying_casting.Rmd | 10 vignettes/tidytext.Rmd | 9 61 files changed, 914 insertions(+), 1027 deletions(-)
Title: Statistical Inference for Partially Observed Markov Processes
Description: Tools for data analysis with partially observed Markov process (POMP) models (also known as stochastic dynamical systems, hidden Markov models, and nonlinear, non-Gaussian, state-space models). The package provides facilities for implementing POMP models, simulating them, and fitting them to time series data by a variety of frequentist and Bayesian methods. It is also a versatile platform for implementation of inference methods for general POMP models.
Author: Aaron A. King [aut, cre],
Edward L. Ionides [aut],
Carles Breto [aut],
Stephen P. Ellner [ctb],
Matthew J. Ferrari [ctb],
Sebastian Funk [ctb],
Steven G. Johnson [ctb],
Bruce E. Kendall [ctb],
Michael Lavine [ctb],
Dao Nguyen [ctb],
Eamon B. O'Dea [c [...truncated...]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between pomp versions 4.4 dated 2022-11-21 and 4.5 dated 2022-12-20
DESCRIPTION | 10 ++++---- MD5 | 32 +++++++++++++------------- NAMESPACE | 1 R/kalman.R | 59 ------------------------------------------------ R/kf.R | 36 ++++++++++++++++------------- R/pfilter.R | 47 +++++++++++++++++++++++++++----------- R/saved_states.R | 42 ++++++++++++++++++++++++++++++---- R/wquant.R | 53 ++++++++++++++++++++++++++----------------- inst/NEWS | 22 +++++++++++++++++ inst/NEWS.Rd | 13 ++++++++++ man/kf.Rd | 31 +++++++++++++------------ man/macros/citations.Rd | 4 +++ man/pfilter.Rd | 24 +++++++++++-------- man/saved_states.Rd | 16 +++++++++++-- man/wquant.Rd | 14 +++++++---- src/pfilter.c | 2 - src/skeleton.c | 2 - 17 files changed, 239 insertions(+), 169 deletions(-)
Title: Causal Discovery under a Confounder Blanket
Description: Methods for learning causal relationships among a set of
foreground variables X based on signals from a (potentially much
larger) set of background variables Z, which are known non-descendants
of X. The confounder blanket learner (CBL) uses sparse regression
techniques to simultaneously perform many conditional independence
tests, with complementary pairs stability selection to guarantee
finite sample error control. CBL is sound and complete with respect to
a so-called "lazy oracle", and works with both linear and nonlinear
systems. For details, see Watson & Silva (2022) <arXiv:2205.05715>.
Author: David Watson [aut, cre]
Maintainer: David Watson <david.s.watson11@gmail.com>
Diff between cbl versions 0.1.2 dated 2022-11-16 and 0.1.3 dated 2022-12-20
cbl-0.1.2/cbl/README.md |only cbl-0.1.3/cbl/DESCRIPTION | 10 +++++----- cbl-0.1.3/cbl/MD5 | 9 ++++----- cbl-0.1.3/cbl/NAMESPACE | 1 - cbl-0.1.3/cbl/NEWS.md | 3 +++ cbl-0.1.3/cbl/R/cbl.R | 3 +-- 6 files changed, 13 insertions(+), 13 deletions(-)
Title: Supporting Functions for Packages Maintained by 'YuLab-SMU'
Description: Miscellaneous functions commonly used by 'YuLab-SMU'.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between yulab.utils versions 0.0.5 dated 2022-06-29 and 0.0.6 dated 2022-12-20
yulab.utils-0.0.5/yulab.utils/R/str-wrap.R |only yulab.utils-0.0.6/yulab.utils/DESCRIPTION | 10 +++++----- yulab.utils-0.0.6/yulab.utils/MD5 | 15 +++++++++------ yulab.utils-0.0.6/yulab.utils/NAMESPACE | 4 ++++ yulab.utils-0.0.6/yulab.utils/NEWS.md | 5 +++++ yulab.utils-0.0.6/yulab.utils/R/mat2df.R |only yulab.utils-0.0.6/yulab.utils/R/str-utilities.R |only yulab.utils-0.0.6/yulab.utils/R/sudo-install.R | 4 ++-- yulab.utils-0.0.6/yulab.utils/man/mat2df.Rd |only yulab.utils-0.0.6/yulab.utils/man/str-starts-ends.Rd |only yulab.utils-0.0.6/yulab.utils/man/str_wrap.Rd | 2 +- 11 files changed, 26 insertions(+), 14 deletions(-)
Title: Tools for Multimodal Network Analysis
Description: A set of tools for analysing multimodal networks.
All functions operate with matrices, edge lists,
and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
It includes functions for measuring
centrality, centralization, cohesion, closure, and constraint,
as well as for network block-modelling, regression, and diffusion models.
The package is released as a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book in addition to other network data.
Author: James Hollway [cre, aut, ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 0.13.0 dated 2022-11-30 and 0.13.2 dated 2022-12-20
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Title: Bayesian Dominance Hierarchy Steepness via Elo Rating and
David's Scores
Description: Obtain Bayesian posterior distributions of dominance hierarchy steepness (Neumann and Fischer (2022) <doi:10.1111/2041-210X.14021>). Steepness estimation is based on Bayesian implementations of either Elo-rating or David's scores.
Author: Christof Neumann [aut, cre]
Maintainer: Christof Neumann <christofneumann1@gmail.com>
Diff between EloSteepness versions 0.4.6 dated 2022-10-11 and 0.4.7 dated 2022-12-20
DESCRIPTION | 12 +++--- MD5 | 16 ++++---- README.md | 2 - inst/doc/tutorial.Rmd | 2 - inst/doc/tutorial.pdf |binary tests/testthat/test-generate_interaction_probs.R | 42 ++++++++++++++--------- tests/testthat/test-remove_dyads.R | 13 ++++--- vignettes/refs.bib | 10 +++++ vignettes/tutorial.Rmd | 2 - 9 files changed, 63 insertions(+), 36 deletions(-)
Title: Record Linkage and Epidemiological Case Definitions in R
Description: An R package for record linkage and implementing epidemiological case definitions in R.
Record linkage is implemented either through a multistage deterministic approach or a probabilistic approach.
Matching records are assigned to unique groups. There are mechanisms to address missing data and conflicting matches across linkage stages.
Track and assign events (e.g. sample collection) and periods (e.g. hospital admission) to unique groups based on a case definition.
The tracking process permits several options such as episode lengths and recurrence.
Duplicate events or records can then be identified for removal or further analyses.
Author: Olisaeloka Nsonwu
Maintainer: Olisaeloka Nsonwu <olisa.nsonwu@gmail.com>
Diff between diyar versions 0.4.1 dated 2021-12-05 and 0.4.2 dated 2022-12-20
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Title: EMF Graphics Output Device
Description: Output graphics to EMF+/EMF.
Author: Philip Johnson
Maintainer: Philip Johnson <plfj@umd.edu>
Diff between devEMF versions 4.1-1 dated 2022-11-04 and 4.1-2 dated 2022-12-20
DESCRIPTION | 9 +++++---- MD5 | 6 +++--- NEWS | 7 +++++++ src/devEMF.cpp | 5 ++--- 4 files changed, 17 insertions(+), 10 deletions(-)
Title: Functional Programming Tools
Description: A complete and consistent functional programming toolkit for
R.
Author: Hadley Wickham [aut] ,
Lionel Henry [aut, cre],
RStudio [cph, fnd]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between purrr versions 0.3.5 dated 2022-10-06 and 1.0.0 dated 2022-12-20
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Title: Mixtures of Exponential-Distance Models with Covariates
Description: Implements a model-based clustering method for categorical life-course sequences relying on mixtures of exponential-distance models introduced by Murphy et al. (2021) <doi:10.1111/rssa.12712>. A range of flexible precision parameter settings corresponding to weighted generalisations of the Hamming distance metric are considered, along with the potential inclusion of a noise component. Gating covariates can be supplied in order to relate sequences to baseline characteristics and sampling weights are also accommodated. The models are fitted using the EM algorithm and tools for visualising the results are also provided.
Author: Keefe Murphy [aut, cre] ,
Thomas Brendan Murphy [ctb] ,
Raffaella Piccarreta [ctb],
Isobel Claire Gormley [ctb]
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MEDseq versions 1.3.3 dated 2022-03-28 and 1.4.0 dated 2022-12-20
DESCRIPTION | 12 MD5 | 57 ++-- NAMESPACE | 4 R/Functions.R | 410 ++++++++++++++++++++++++------- R/Hidden_Functions.R | 87 +++++- R/MEDseq.R | 5 R/data.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 25 + inst/doc/MEDseq.Rmd | 6 inst/doc/MEDseq.html | 591 +++++++++++++++++++++++++++++++++++++--------- man/MEDseq-package.Rd | 5 man/MEDseq_AvePP.Rd |only man/MEDseq_clustnames.Rd | 10 man/MEDseq_compare.Rd | 1 man/MEDseq_control.Rd | 5 man/MEDseq_entropy.Rd | 3 man/MEDseq_fit.Rd | 1 man/MEDseq_meantime.Rd | 3 man/MEDseq_stderr.Rd | 1 man/biofam.Rd | 1 man/dbs.Rd | 1 man/dist_freqwH.Rd |only man/get_MEDseq_results.Rd | 1 man/mvad.Rd | 1 man/plot.MEDseq.Rd | 45 ++- man/predict.MEDgating.Rd | 1 man/seqdef.Rd |only man/wKModes.Rd | 39 ++- vignettes/MEDseq.Rmd | 6 31 files changed, 999 insertions(+), 324 deletions(-)
Title: R Interface to 'Keras'
Description: Interface to 'Keras' <https://keras.io>, a high-level neural
networks 'API'. 'Keras' was developed with a focus on enabling fast experimentation,
supports both convolution based networks and recurrent networks (as well as
combinations of the two), and runs seamlessly on both 'CPU' and 'GPU' devices.
Author: Tomasz Kalinowski [ctb, cph, cre],
Daniel Falbel [ctb, cph],
JJ Allaire [aut, cph],
Francois Chollet [aut, cph],
RStudio [ctb, cph, fnd],
Google [ctb, cph, fnd],
Yuan Tang [ctb, cph] ,
Wouter Van Der Bijl [ctb, cph],
Martin Studer [ctb, cph],
Sigrid [...truncated...]
Maintainer: Tomasz Kalinowski <tomasz.kalinowski@rstudio.com>
Diff between keras versions 2.9.0 dated 2022-05-23 and 2.11.0 dated 2022-12-20
DESCRIPTION | 12 MD5 | 465 +++++++-------- NAMESPACE | 5 NEWS.md | 60 + R/callbacks.R | 62 +- R/history.R | 19 R/install.R | 10 R/layer-attention.R | 69 +- R/layer-custom.R | 19 R/layer-methods.R | 23 R/layers-merge.R | 172 +++-- R/layers-noise.R | 54 - R/layers-preprocessing.R | 276 ++++++-- R/metrics.R | 2 R/model-custom.R | 6 R/optimizers.R | 919 ++++++++++++++++++++++------- R/package.R | 2 R/preprocessing.R | 8 R/py-classes.R | 3 R/utils.R | 27 build/vignette.rds |binary inst/doc/applications.Rmd | 22 inst/doc/applications.html | 385 ++++++------ inst/doc/custom_layers.Rmd | 4 inst/doc/custom_layers.html | 682 ++++++++++++---------- inst/doc/custom_models.html | 288 +++++---- inst/doc/faq.Rmd | 30 inst/doc/faq.html | 955 +++++++++++++++++++------------ inst/doc/functional_api.html | 761 +++++++++++++----------- inst/doc/guide_keras.Rmd | 8 inst/doc/guide_keras.html | 774 ++++++++++++++----------- inst/doc/index.Rmd | 2 inst/doc/index.html | 360 +++++++---- inst/doc/saving_serializing.html | 596 +++++++++++-------- inst/doc/sequential_model.html | 872 +++++++++++++++------------- inst/doc/training_callbacks.html | 359 ++++++----- inst/doc/training_visualization.Rmd | 4 inst/doc/training_visualization.html | 397 +++++++----- man/callback_backup_and_restore.Rd |only man/custom_metric.Rd | 2 man/get_config.Rd | 5 man/grapes-py_class-grapes.Rd | 3 man/image_dataset_from_directory.Rd | 5 man/install_keras.Rd | 6 man/k_abs.Rd | 2 man/k_all.Rd | 2 man/k_any.Rd | 2 man/k_arange.Rd | 2 man/k_argmax.Rd | 2 man/k_argmin.Rd | 2 man/k_backend.Rd | 2 man/k_batch_dot.Rd | 2 man/k_batch_flatten.Rd | 2 man/k_batch_get_value.Rd | 2 man/k_batch_normalization.Rd | 2 man/k_batch_set_value.Rd | 2 man/k_bias_add.Rd | 2 man/k_binary_crossentropy.Rd | 2 man/k_cast.Rd | 2 man/k_cast_to_floatx.Rd | 2 man/k_categorical_crossentropy.Rd | 2 man/k_clear_session.Rd | 2 man/k_clip.Rd | 2 man/k_concatenate.Rd | 2 man/k_constant.Rd | 2 man/k_conv1d.Rd | 2 man/k_conv2d.Rd | 2 man/k_conv2d_transpose.Rd | 2 man/k_conv3d.Rd | 2 man/k_conv3d_transpose.Rd | 2 man/k_cos.Rd | 2 man/k_count_params.Rd | 2 man/k_ctc_batch_cost.Rd | 2 man/k_ctc_decode.Rd | 2 man/k_ctc_label_dense_to_sparse.Rd | 2 man/k_cumprod.Rd | 2 man/k_cumsum.Rd | 2 man/k_depthwise_conv2d.Rd | 2 man/k_dot.Rd | 2 man/k_dropout.Rd | 2 man/k_dtype.Rd | 2 man/k_elu.Rd | 2 man/k_epsilon.Rd | 2 man/k_equal.Rd | 2 man/k_eval.Rd | 2 man/k_exp.Rd | 2 man/k_expand_dims.Rd | 2 man/k_eye.Rd | 2 man/k_flatten.Rd | 2 man/k_floatx.Rd | 2 man/k_foldl.Rd | 2 man/k_foldr.Rd | 2 man/k_function.Rd | 2 man/k_gather.Rd | 2 man/k_get_session.Rd | 2 man/k_get_uid.Rd | 2 man/k_get_value.Rd | 2 man/k_get_variable_shape.Rd | 2 man/k_gradients.Rd | 2 man/k_greater.Rd | 2 man/k_greater_equal.Rd | 2 man/k_hard_sigmoid.Rd | 2 man/k_identity.Rd | 2 man/k_image_data_format.Rd | 2 man/k_in_test_phase.Rd | 2 man/k_in_top_k.Rd | 2 man/k_in_train_phase.Rd | 2 man/k_int_shape.Rd | 2 man/k_is_keras_tensor.Rd | 2 man/k_is_placeholder.Rd | 2 man/k_is_sparse.Rd | 2 man/k_is_tensor.Rd | 2 man/k_l2_normalize.Rd | 2 man/k_learning_phase.Rd | 2 man/k_less.Rd | 2 man/k_less_equal.Rd | 2 man/k_local_conv1d.Rd | 2 man/k_local_conv2d.Rd | 2 man/k_log.Rd | 2 man/k_logsumexp.Rd | 2 man/k_manual_variable_initialization.Rd | 2 man/k_map_fn.Rd | 2 man/k_max.Rd | 2 man/k_maximum.Rd | 2 man/k_mean.Rd | 2 man/k_min.Rd | 2 man/k_minimum.Rd | 2 man/k_moving_average_update.Rd | 2 man/k_ndim.Rd | 2 man/k_normalize_batch_in_training.Rd | 2 man/k_not_equal.Rd | 2 man/k_one_hot.Rd | 2 man/k_ones.Rd | 2 man/k_ones_like.Rd | 2 man/k_permute_dimensions.Rd | 2 man/k_placeholder.Rd | 2 man/k_pool2d.Rd | 2 man/k_pool3d.Rd | 2 man/k_pow.Rd | 2 man/k_print_tensor.Rd | 2 man/k_prod.Rd | 2 man/k_random_bernoulli.Rd | 2 man/k_random_normal.Rd | 2 man/k_random_normal_variable.Rd | 2 man/k_random_uniform.Rd | 2 man/k_random_uniform_variable.Rd | 2 man/k_relu.Rd | 2 man/k_repeat.Rd | 2 man/k_repeat_elements.Rd | 2 man/k_reset_uids.Rd | 2 man/k_reshape.Rd | 2 man/k_resize_images.Rd | 2 man/k_resize_volumes.Rd | 2 man/k_reverse.Rd | 2 man/k_rnn.Rd | 2 man/k_round.Rd | 2 man/k_separable_conv2d.Rd | 2 man/k_set_learning_phase.Rd | 2 man/k_set_value.Rd | 2 man/k_shape.Rd | 2 man/k_sigmoid.Rd | 2 man/k_sign.Rd | 2 man/k_sin.Rd | 2 man/k_softmax.Rd | 2 man/k_softplus.Rd | 2 man/k_softsign.Rd | 2 man/k_sparse_categorical_crossentropy.Rd | 2 man/k_spatial_2d_padding.Rd | 2 man/k_spatial_3d_padding.Rd | 2 man/k_sqrt.Rd | 2 man/k_square.Rd | 2 man/k_squeeze.Rd | 2 man/k_stack.Rd | 2 man/k_std.Rd | 2 man/k_stop_gradient.Rd | 2 man/k_sum.Rd | 2 man/k_switch.Rd | 2 man/k_tanh.Rd | 2 man/k_temporal_padding.Rd | 2 man/k_tile.Rd | 2 man/k_to_dense.Rd | 2 man/k_transpose.Rd | 2 man/k_truncated_normal.Rd | 2 man/k_unstack.Rd | 2 man/k_update.Rd | 2 man/k_update_add.Rd | 2 man/k_update_sub.Rd | 2 man/k_var.Rd | 2 man/k_variable.Rd | 2 man/k_zeros.Rd | 2 man/k_zeros_like.Rd | 2 man/keras-package.Rd | 4 man/keras_model_custom.Rd | 7 man/layer_add.Rd | 5 man/layer_attention.Rd | 67 +- man/layer_average.Rd | 4 man/layer_concatenate.Rd | 8 man/layer_discretization.Rd | 25 man/layer_dot.Rd | 9 man/layer_gaussian_dropout.Rd | 38 - man/layer_gaussian_noise.Rd | 34 - man/layer_hashing.Rd | 33 + man/layer_integer_lookup.Rd | 107 ++- man/layer_maximum.Rd | 4 man/layer_minimum.Rd | 4 man/layer_multi_head_attention.Rd | 9 man/layer_multiply.Rd | 5 man/layer_normalization.Rd | 13 man/layer_string_lookup.Rd | 91 +- man/layer_subtract.Rd | 5 man/optimizer_adadelta.Rd | 107 ++- man/optimizer_adagrad.Rd | 89 ++ man/optimizer_adam.Rd | 118 ++- man/optimizer_adamax.Rd | 119 +++ man/optimizer_ftrl.Rd |only man/optimizer_nadam.Rd | 104 ++- man/optimizer_rmsprop.Rd | 110 ++- man/optimizer_sgd.Rd | 104 ++- man/zip_lists.Rd | 2 tests/testthat/helper-utils.R | 9 tests/testthat/test-Layer.R | 45 + tests/testthat/test-callbacks.R | 4 tests/testthat/test-generators.R | 3 tests/testthat/test-layers.R | 36 + tests/testthat/test-model.R | 38 + tools/find-api-diffs.R | 19 tools/make-layer-wrapper.R | 9 tools/make-optimizer-wrapper.R |only tools/make-wrapper.R | 3 vignettes/applications.Rmd | 22 vignettes/custom_layers.Rmd | 4 vignettes/faq.Rmd | 30 vignettes/guide_keras.Rmd | 8 vignettes/index.Rmd | 2 vignettes/training_visualization.Rmd | 4 235 files changed, 6480 insertions(+), 4008 deletions(-)
Title: Obtaining Open Data from Instituto Canario De Estadistica
(ISTAC) API
Description: You can access to open data published in Instituto Canario De Estadistica (ISTAC) APIs at <https://datos.canarias.es/api/estadisticas/>.
Author: Alberto Gonzalez [aut, cre]
Maintainer: Alberto Gonzalez <jgonyanp@gobiernodecanarias.org>
Diff between istacr versions 0.2.0 dated 2022-08-22 and 0.2.2 dated 2022-12-20
DESCRIPTION | 8 +- MD5 | 33 +++++----- NAMESPACE | 1 R/indicators-geographic.R | 10 +-- R/indicators-indicators.R | 8 +- R/indicators-systems.R | 12 +-- R/statistical-resources-cubes.R | 18 ++--- R/statistical-resources-queries.R | 20 +++--- R/structural-resources-category.R | 22 +++--- R/structural-resources-clasifications.R | 18 ++--- R/structural-resources-concepts.R | 16 ++-- R/structural-resources-datastructures.R | 20 +++--- R/structural-resources-variables.R | 18 ++--- man/get_statisticalresources_datasets.Rd | 18 ----- man/get_statisticalresources_datasets_agency_resource_version.Rd | 6 - man/get_statisticalresources_queries.Rd |only man/get_statisticalresources_queries_agency.Rd | 2 man/get_statisticalresources_queries_agency_resource.Rd | 4 - 18 files changed, 112 insertions(+), 122 deletions(-)
Title: Analytic Insurance Rating Techniques
Description: Methods for insurance rating. It helps actuaries to implement GLMs within all relevant steps needed to construct
a risk premium from raw data. It provides a data driven strategy for the construction of insurance tariff classes.
This strategy is based on the work by Antonio and Valdez (2012) <doi:10.1007/s10182-011-0152-7>. It also provides recipes
on how to easily perform one-way, or univariate, analyses on an insurance portfolio. In addition it adds functionality
to include reference categories in the levels of the coefficients in the output of a generalized linear regression analysis.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.7.1 dated 2022-09-06 and 0.7.2 dated 2022-12-20
DESCRIPTION | 8 - MD5 | 23 +-- NAMESPACE | 5 NEWS.md | 4 R/model_get_data.R | 17 +- R/model_rating_factors.R | 191 ++++++++++++----------------- R/time_reduce.R | 89 +++++-------- R/univariate.R | 129 +++++++++---------- R/utils.R | 25 +-- R/utils_refinement.R | 34 +++-- tests/testthat/test_model_get_data.R | 39 +++++ tests/testthat/test_model_rating_factors.R |only tests/testthat/test_univariate.R | 14 -- 13 files changed, 291 insertions(+), 287 deletions(-)
More information about insurancerating at CRAN
Permanent link
Title: Embed 'SWI'-'Prolog'
Description: Interface to 'SWI'-'Prolog', <https://www.swi-prolog.org/>. This package is normally not loaded directly, please refer to package 'rolog' instead. The purpose of this package is to provide the 'Prolog' runtime on systems that do not have a software installation of 'SWI'-'Prolog'.
Author: Matthias Gondan [aut, com, cre],
Jan Wielemaker [ctb, cph]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between rswipl versions 8.5.20 dated 2022-11-09 and 9.1.2 dated 2022-12-20
rswipl-8.5.20/rswipl/src/swipl-devel/packages/cpp/cpp4pl.cpp |only rswipl-8.5.20/rswipl/src/swipl-devel/packages/cpp/ffi4pl.c |only rswipl-8.5.20/rswipl/src/swipl-devel/src/pl-beos.c |only rswipl-9.1.2/rswipl/DESCRIPTION | 8 rswipl-9.1.2/rswipl/MD5 | 1272 +++++++++- rswipl-9.1.2/rswipl/NEWS.md | 7 rswipl-9.1.2/rswipl/src/Makevars | 4 rswipl-9.1.2/rswipl/src/Makevars.win | 1 rswipl-9.1.2/rswipl/src/rswipl.cpp | 249 + rswipl-9.1.2/rswipl/src/swipl-devel/CMAKE.md | 3 rswipl-9.1.2/rswipl/src/swipl-devel/CMakeLists.txt | 25 rswipl-9.1.2/rswipl/src/swipl-devel/VERSION | 2 rswipl-9.1.2/rswipl/src/swipl-devel/boot/build_home.pl | 56 rswipl-9.1.2/rswipl/src/swipl-devel/boot/init.pl | 1107 ++++---- rswipl-9.1.2/rswipl/src/swipl-devel/boot/toplevel.pl | 2 rswipl-9.1.2/rswipl/src/swipl-devel/cmake/CheckEnv.cmake | 5 rswipl-9.1.2/rswipl/src/swipl-devel/cmake/Config.cmake | 10 rswipl-9.1.2/rswipl/src/swipl-devel/cmake/PackageSelection.cmake | 8 rswipl-9.1.2/rswipl/src/swipl-devel/cmake/swipl.cmake | 6 rswipl-9.1.2/rswipl/src/swipl-devel/debian/changelog | 66 rswipl-9.1.2/rswipl/src/swipl-devel/debian/control | 6 rswipl-9.1.2/rswipl/src/swipl-devel/debian/swi-prolog-x.manpages |only rswipl-9.1.2/rswipl/src/swipl-devel/debian/watch | 2 rswipl-9.1.2/rswipl/src/swipl-devel/doc/Release.md | 9 rswipl-9.1.2/rswipl/src/swipl-devel/library/apply_macros.pl | 46 rswipl-9.1.2/rswipl/src/swipl-devel/library/build/tools.pl | 168 - rswipl-9.1.2/rswipl/src/swipl-devel/library/help.pl | 145 - rswipl-9.1.2/rswipl/src/swipl-devel/library/listing.pl | 12 rswipl-9.1.2/rswipl/src/swipl-devel/library/main.pl | 128 - rswipl-9.1.2/rswipl/src/swipl-devel/library/prolog_codewalk.pl | 10 rswipl-9.1.2/rswipl/src/swipl-devel/library/prolog_config.pl | 31 rswipl-9.1.2/rswipl/src/swipl-devel/library/streams.pl |only rswipl-9.1.2/rswipl/src/swipl-devel/packages/clib/CMakeLists.txt | 4 rswipl-9.1.2/rswipl/src/swipl-devel/packages/clib/process.c | 3 rswipl-9.1.2/rswipl/src/swipl-devel/packages/clib/test_process.pl | 79 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cmake/PrologPackage.cmake | 2 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/CMakeLists.txt | 10 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/README.md | 6 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/SWI-cpp.h | 2 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/SWI-cpp2.h | 1092 ++++---- rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/pl2cpp.doc | 29 rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/pl2cpp2.doc | 486 ++- rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/test_cpp.cpp |only rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/test_cpp.pl | 311 +- rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/test_ffi.c |only rswipl-9.1.2/rswipl/src/swipl-devel/packages/cpp/test_ffi.pl | 53 rswipl-9.1.2/rswipl/src/swipl-devel/packages/http/CMakeLists.txt | 102 rswipl-9.1.2/rswipl/src/swipl-devel/packages/http/http.doc | 23 rswipl-9.1.2/rswipl/src/swipl-devel/packages/http/http_session.pl | 2 rswipl-9.1.2/rswipl/src/swipl-devel/packages/http/test_proxy.pl | 449 +-- rswipl-9.1.2/rswipl/src/swipl-devel/packages/pcre |only rswipl-9.1.2/rswipl/src/swipl-devel/packages/ssl/crypto.pl | 4 rswipl-9.1.2/rswipl/src/swipl-devel/packages/ssl/etc/README | 2 rswipl-9.1.2/rswipl/src/swipl-devel/packages/ssl/test_ssl.pl | 366 +- rswipl-9.1.2/rswipl/src/swipl-devel/packages/zlib/test_zlib.pl | 69 rswipl-9.1.2/rswipl/src/swipl-devel/scripts/macos-deps.sh | 40 rswipl-9.1.2/rswipl/src/swipl-devel/scripts/make-distribution | 2 rswipl-9.1.2/rswipl/src/swipl-devel/scripts/make-ppa | 2 rswipl-9.1.2/rswipl/src/swipl-devel/snap/local/publish.md | 8 rswipl-9.1.2/rswipl/src/swipl-devel/src/CMakeLists.txt | 33 rswipl-9.1.2/rswipl/src/swipl-devel/src/SWI-Prolog.h | 36 rswipl-9.1.2/rswipl/src/swipl-devel/src/Tests |only rswipl-9.1.2/rswipl/src/swipl-devel/src/Unicode/prolog_syntax_map.pl | 14 rswipl-9.1.2/rswipl/src/swipl-devel/src/config.h.cmake | 4 rswipl-9.1.2/rswipl/src/swipl-devel/src/libbf |only rswipl-9.1.2/rswipl/src/swipl-devel/src/os/README | 2 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/SWI-Stream.h | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-apple.c | 3 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-beos.c |only rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-cstack.c | 121 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-ctype.c | 5 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-file.c | 99 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-fmt.c | 595 ++-- rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-option.c | 31 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-os.c | 27 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-prologflag.c | 145 - rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-stream.c | 79 rswipl-9.1.2/rswipl/src/swipl-devel/src/os/pl-text.c | 93 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-alloc.c | 17 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-arith.c | 563 ++-- rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-arith.h | 2 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-assert.c | 12 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-bf.c |only rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-bf.h |only rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-codetable.c | 12 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-comp.c | 207 - rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-data.h | 4 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-debug.c | 16 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-debug.h | 1 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-error.c | 14 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-fli.c | 44 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-funct.c | 5 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-gc.c | 133 - rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-global.h | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-gmp.c | 661 +++-- rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-gmp.h | 39 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-incl.h | 76 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-index.c | 19 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-init.c | 16 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-inline.h | 33 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-load.c | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-nt.c | 13 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-prims.c | 124 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-pro.c | 32 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-proc.c | 50 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-read.c | 154 - rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-rec.c | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-setup.c | 24 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-srcfile.c | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-tabling.c | 81 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-thread.c | 74 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-trace.c | 69 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-umap.c | 309 +- rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-vmi.c | 127 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-wam.c | 106 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-wic.c | 46 rswipl-9.1.2/rswipl/src/swipl-devel/src/pl-write.c | 6 rswipl-9.1.2/rswipl/src/swipl-devel/src/swipl.1.in | 3 rswipl-9.1.2/rswipl/src/swipl-devel/src/test.pl | 35 rswipl-9.1.2/rswipl/src/swipl-devel/src/wasm/prolog.js | 128 - rswipl-9.1.2/rswipl/src/swipl-devel/src/wasm/shell.html | 2 rswipl-9.1.2/rswipl/tests/testthat/test-rswipl.R | 21 122 files changed, 6791 insertions(+), 4338 deletions(-)
Title: Gaussian Parsimonious Clustering Models with Covariates and a
Noise Component
Description: Clustering via parsimonious Gaussian Mixtures of Experts using the MoEClust models introduced by Murphy and Murphy (2020) <doi:10.1007/s11634-019-00373-8>. This package fits finite Gaussian mixture models with a formula interface for supplying gating and/or expert network covariates using a range of parsimonious covariance parameterisations from the GPCM family via the EM/CEM algorithm. Visualisation of the results of such models using generalised pairs plots and the inclusion of an additional noise component is also facilitated. A greedy forward stepwise search algorithm is provided for identifying the optimal model in terms of the number of components, the GPCM covariance parameterisation, and the subsets of gating/expert network covariates.
Author: Keefe Murphy [aut, cre] ,
Thomas Brendan Murphy [ctb]
Maintainer: Keefe Murphy <keefe.murphy@mu.ie>
Diff between MoEClust versions 1.5.0 dated 2022-03-28 and 1.5.1 dated 2022-12-20
DESCRIPTION | 10 MD5 | 46 ++-- NAMESPACE | 4 R/Functions.R | 91 +++++--- R/MoEClust.R | 6 R/Plotting_Functions.R | 374 ++++++++++++++++++++++++++++++--- R/data.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.md | 19 + inst/doc/MoEClust.Rmd | 4 inst/doc/MoEClust.html | 537 +++++++++++++++++++++++++++++++++++++----------- man/MoEClust-package.Rd | 6 man/MoE_AvePP.Rd |only man/MoE_Similarity.Rd |only man/MoE_control.Rd | 4 man/MoE_crit.Rd | 2 man/MoE_entropy.Rd | 4 man/MoE_gpairs.Rd | 22 + man/MoE_mahala.Rd | 2 man/ais.Rd | 2 man/expert_covar.Rd | 2 man/noise_vol.Rd | 4 man/plot.MoEClust.Rd | 12 - vignettes/MoEClust.Rmd | 4 25 files changed, 918 insertions(+), 239 deletions(-)
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also
contains a number of lower level 'CLI' elements: rules, boxes, trees,
and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI
colors and text styles as well.
Author: Gabor Csardi [aut, cre],
Hadley Wickham [ctb],
Kirill Mueller [ctb],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cli versions 3.4.1 dated 2022-09-23 and 3.5.0 dated 2022-12-20
cli-3.4.1/cli/tests/testthat/_snaps/headers.md |only cli-3.5.0/cli/DESCRIPTION | 15 - cli-3.5.0/cli/MD5 | 177 +++++++++------ cli-3.5.0/cli/NAMESPACE | 5 cli-3.5.0/cli/NEWS.md | 18 + cli-3.5.0/cli/R/aaa-utils.R | 2 cli-3.5.0/cli/R/aab-rstudio-detect.R | 21 + cli-3.5.0/cli/R/ansi-hyperlink.R | 24 +- cli-3.5.0/cli/R/ansi-palette.R | 6 cli-3.5.0/cli/R/ansi.R | 18 + cli-3.5.0/cli/R/ansiex.R | 31 ++ cli-3.5.0/cli/R/bullets.R | 2 cli-3.5.0/cli/R/cliapp-docs.R | 15 - cli-3.5.0/cli/R/errors.R | 43 ++- cli-3.5.0/cli/R/glue.R | 183 ++++++++++++++-- cli-3.5.0/cli/R/hash.R | 17 + cli-3.5.0/cli/R/inline.R | 2 cli-3.5.0/cli/R/keypress.R |only cli-3.5.0/cli/R/onload.R | 2 cli-3.5.0/cli/R/prettycode.R | 108 +++++++++ cli-3.5.0/cli/R/progress-server.R | 2 cli-3.5.0/cli/R/test.R | 26 ++ cli-3.5.0/cli/R/tty.R | 2 cli-3.5.0/cli/README.md | 69 ++++-- cli-3.5.0/cli/man/ansi_collapse.Rd |only cli-3.5.0/cli/man/ansi_strtrim.Rd | 3 cli-3.5.0/cli/man/cli_bullets.Rd | 2 cli-3.5.0/cli/man/cli_progress_builtin_handlers.Rd | 2 cli-3.5.0/cli/man/code_highlight.Rd | 5 cli-3.5.0/cli/man/figures/README/alert-danger-dark.svg |only cli-3.5.0/cli/man/figures/README/alert-danger.svg | 2 cli-3.5.0/cli/man/figures/README/alert-dark.svg |only cli-3.5.0/cli/man/figures/README/alert-info-dark.svg |only cli-3.5.0/cli/man/figures/README/alert-info.svg | 2 cli-3.5.0/cli/man/figures/README/alert-success-dark.svg |only cli-3.5.0/cli/man/figures/README/alert-success.svg | 2 cli-3.5.0/cli/man/figures/README/alert-warning-dark.svg |only cli-3.5.0/cli/man/figures/README/alert-warning.svg | 2 cli-3.5.0/cli/man/figures/README/alert.svg | 2 cli-3.5.0/cli/man/figures/README/glue-dark.svg |only cli-3.5.0/cli/man/figures/README/glue.svg | 2 cli-3.5.0/cli/man/figures/README/h1-dark.svg |only cli-3.5.0/cli/man/figures/README/h1.svg | 2 cli-3.5.0/cli/man/figures/README/h2-dark.svg |only cli-3.5.0/cli/man/figures/README/h2.svg | 2 cli-3.5.0/cli/man/figures/README/h3-dark.svg |only cli-3.5.0/cli/man/figures/README/h3.svg | 2 cli-3.5.0/cli/man/figures/README/lists-dark.svg |only cli-3.5.0/cli/man/figures/README/lists.svg | 2 cli-3.5.0/cli/man/figures/README/plurals-dark.svg |only cli-3.5.0/cli/man/figures/README/plurals.svg | 2 cli-3.5.0/cli/man/figures/README/progress-dark.svg |only cli-3.5.0/cli/man/figures/README/progress.svg | 2 cli-3.5.0/cli/man/figures/README/themes-dark.svg |only cli-3.5.0/cli/man/figures/README/themes.svg | 2 cli-3.5.0/cli/man/has_keypress_support.Rd |only cli-3.5.0/cli/man/hash_md5.Rd | 8 cli-3.5.0/cli/man/inline-markup.Rd | 13 - cli-3.5.0/cli/man/keypress.Rd |only cli-3.5.0/cli/man/links.Rd | 2 cli-3.5.0/cli/man/pretty_print_code.Rd |only cli-3.5.0/cli/src/Makevars |only cli-3.5.0/cli/src/ansi.c | 2 cli-3.5.0/cli/src/cleancall.c | 4 cli-3.5.0/cli/src/cleancall.h | 4 cli-3.5.0/cli/src/cli.h | 21 - cli-3.5.0/cli/src/init.c | 18 + cli-3.5.0/cli/src/keypress-unix.c |only cli-3.5.0/cli/src/keypress-win.c |only cli-3.5.0/cli/src/keypress.c |only cli-3.5.0/cli/src/keypress.h |only cli-3.5.0/cli/src/md5.c | 51 ++++ cli-3.5.0/cli/src/progress-altrep.c | 4 cli-3.5.0/cli/src/progress.c | 8 cli-3.5.0/cli/src/thread.c | 10 cli-3.5.0/cli/src/tty.c | 2 cli-3.5.0/cli/src/utils.c | 2 cli-3.5.0/cli/src/win-utf8.c | 2 cli-3.5.0/cli/tests/testthat/_snaps/1.0.6 |only cli-3.5.0/cli/tests/testthat/_snaps/ansi-hyperlink.md | 53 ++++ cli-3.5.0/cli/tests/testthat/_snaps/ansi-make.md | 21 + cli-3.5.0/cli/tests/testthat/_snaps/ansi-palette.md |only cli-3.5.0/cli/tests/testthat/_snaps/ansi-utils.md |only cli-3.5.0/cli/tests/testthat/_snaps/ansi.md |only cli-3.5.0/cli/tests/testthat/_snaps/ansiex.md | 45 +++ cli-3.5.0/cli/tests/testthat/_snaps/app.md | 10 cli-3.5.0/cli/tests/testthat/_snaps/collapsing.md | 139 ++++++++++++ cli-3.5.0/cli/tests/testthat/_snaps/keypress.md |only cli-3.5.0/cli/tests/testthat/_snaps/new |only cli-3.5.0/cli/tests/testthat/_snaps/rlang-errors.md | 10 cli-3.5.0/cli/tests/testthat/_snaps/utils.md | 175 +++++++++++++++ cli-3.5.0/cli/tests/testthat/helper.R | 28 ++ cli-3.5.0/cli/tests/testthat/test-ansi-hyperlink.R | 145 ++++++++++++ cli-3.5.0/cli/tests/testthat/test-ansi-make.R | 46 ++++ cli-3.5.0/cli/tests/testthat/test-ansi-palette.R |only cli-3.5.0/cli/tests/testthat/test-ansi-utils.R |only cli-3.5.0/cli/tests/testthat/test-ansi.R | 47 ++++ cli-3.5.0/cli/tests/testthat/test-ansiex.R | 30 ++ cli-3.5.0/cli/tests/testthat/test-app.R | 8 cli-3.5.0/cli/tests/testthat/test-collapsing.R | 47 ++++ cli-3.5.0/cli/tests/testthat/test-hash.R | 15 + cli-3.5.0/cli/tests/testthat/test-headers.R | 4 cli-3.5.0/cli/tests/testthat/test-keypress.R |only cli-3.5.0/cli/tests/testthat/test-links.R | 14 + cli-3.5.0/cli/tests/testthat/test-rlang-errors.R | 2 cli-3.5.0/cli/tests/testthat/test-utils.R | 92 ++++++++ 106 files changed, 1667 insertions(+), 241 deletions(-)
More information about coreCollection at CRAN
Permanent link
Title: Continuous-Time Multivariate Analysis
Description: Implements a basis function or functional data analysis framework
for several techniques of multivariate analysis in continuous-time
setting. Specifically, we introduced continuous-time analogues of
several classical techniques of multivariate analysis, such as
principal component analysis, canonical correlation analysis,
Fisher linear discriminant analysis, K-means clustering, and so
on. Details are in Philip T Reiss and Biplab Paul (2022) "Continuous-time multivariate analysis";
James O Ramsay, Bernard W Silverman (2005) <ISBN:978-0-387-22751-1> "Functional Data Analysis";
James O Ramsay, Giles Hooker and Spencer Graves (2009) <ISBN:978-0-387-98185-7> "Functional Data Analysis with R and MATLAB".
Author: Biplab Paul [aut, cre],
Philip Tzvi Reiss [aut]
Maintainer: Biplab Paul <paul.biplab497@gmail.com>
Diff between ctmva versions 1.0 dated 2022-08-18 and 1.1.0 dated 2022-12-20
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/cca.ct.R | 7 +++++-- R/lda.ct.R | 7 +++++-- 4 files changed, 17 insertions(+), 11 deletions(-)
Title: Global Optimization by Differential Evolution in C++
Description: An efficient C++ based implementation of the 'DEoptim'
function which performs global optimization by differential evolution.
Its creation was motivated by trying to see if the old approximation "easier,
shorter, faster: pick any two" could in fact be extended to achieving all
three goals while moving the code from plain old C to modern C++. The
initial version did in fact do so, but a good part of the gain was due to
an implicit code review which eliminated a few inefficiencies which have
since been eliminated in 'DEoptim'.
Author: Dirk Eddelbuettel extending DEoptim which itself is based on DE-Engine
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppDE versions 0.1.6 dated 2018-06-09 and 0.1.7 dated 2022-12-20
ChangeLog | 65 +++++ DESCRIPTION | 15 - MD5 | 27 +- R/RcppExports.R | 4 README.md | 10 build/vignette.rds |binary inst/doc/RcppDE.pdf |binary man/DEoptim-methods.Rd | 290 ++++++++++++------------ man/DEoptim.Rd | 552 +++++++++++++++++++++++------------------------ man/DEoptim.control.Rd | 4 src/RcppExports.cpp | 13 - src/devol.cpp | 184 +++++++-------- src/evaluate.h | 81 +----- src/exampleFunctions.cpp |only tests/compTest.R | 1 15 files changed, 636 insertions(+), 610 deletions(-)
Title: Fixed Rank Kriging
Description: A tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of basis functions. This fixed-rank basis-function representation facilitates the modelling of big data, and the method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above also supports the modelling of non-Gaussian data (e.g., Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian) by employing a generalised linear mixed model (GLMM) framew [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.1.2 dated 2022-12-16 and 2.1.3 dated 2022-12-20
DESCRIPTION | 12 +++++----- MD5 | 8 +++---- R/geometryfns.R | 46 +++++++++++++++++++++++++++++++++--------- inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary 5 files changed, 47 insertions(+), 19 deletions(-)
Title: Simplifies Exploratory Data Analysis
Description: Interactive data exploration with one line of code or use an easy
to remember set of tidy functions for exploratory data analysis.
Introduces three main verbs. explore() to graphically explore a variable or
table, describe() to describe a variable or table and report() to create an
automated report.
Author: Roland Krasser
Maintainer: Roland Krasser <roland.krasser@gmail.com>
Diff between explore versions 1.0.0 dated 2022-11-11 and 1.0.1 dated 2022-12-20
DESCRIPTION | 6 - MD5 | 47 +++++++-------- NAMESPACE | 1 NEWS.md | 7 ++ R/create-data.R | 115 +++++++++++++++++++++++++++++++++++++- R/explore.R | 17 +---- README.md | 3 inst/doc/explore.R | 86 ++++++++++++++-------------- inst/doc/explore.Rmd | 87 ++++++++++++++-------------- inst/doc/explore.html | 110 ++++++++++++++++++------------------ inst/doc/explore_mtcars.R | 46 +++++++-------- inst/doc/explore_mtcars.Rmd | 50 ++++++++-------- inst/doc/explore_mtcars.html | 52 ++++++++--------- inst/doc/explore_penguins.R | 12 +-- inst/doc/explore_penguins.Rmd | 14 ++-- inst/doc/explore_penguins.html | 18 ++--- inst/doc/explore_titanic.R | 26 ++++---- inst/doc/explore_titanic.Rmd | 26 ++++---- inst/doc/explore_titanic.html | 30 ++++----- man/create_data_unfair.Rd |only tests/testthat/test-create-data.R | 25 ++++++++ vignettes/explore.Rmd | 87 ++++++++++++++-------------- vignettes/explore_mtcars.Rmd | 50 ++++++++-------- vignettes/explore_penguins.Rmd | 14 ++-- vignettes/explore_titanic.Rmd | 26 ++++---- 25 files changed, 548 insertions(+), 407 deletions(-)
Title: A Universal Differential Expression Prediction Tool for
Single-Cell and Spatial Genomics Data
Description: One key exploratory analysis step in single-cell genomics data analysis
is the prediction of features with different activity levels. For example, we want
to predict differentially expressed genes (DEGs) in single-cell RNA-seq data,
spatial DEGs in spatial transcriptomics data, or differentially accessible
regions (DARs) in single-cell ATAC-seq data. 'singleCellHaystack' predicts differentially
active features in single cell omics datasets without relying on the clustering
of cells into arbitrary clusters. 'singleCellHaystack' uses Kullback-Leibler
divergence to find features (e.g., genes, genomic regions, etc) that are active
in subsets of cells that are non-randomly positioned inside an input space (such as
1D trajectories, 2D tissue sections, multi-dimensional embeddings, etc). For
the theoretical background of 'singleCellHaystack' we refer to our original paper
Vandenbon and Diez (Nature Communications, 2020) <doi:10.1038/s41467-020-17900-3>
and our update Vandenbon and Diez [...truncated...]
Author: Alexis Vandenbon [aut, cre] ,
Diego Diez [aut]
Maintainer: Alexis Vandenbon <alexis.vandenbon@gmail.com>
Diff between singleCellHaystack versions 0.3.4 dated 2021-03-27 and 1.0.0 dated 2022-12-20
singleCellHaystack-0.3.4/singleCellHaystack/tests/testthat/test-get_d_kl.R |only singleCellHaystack-0.3.4/singleCellHaystack/tests/testthat/test-get_parameters_haystack.R |only singleCellHaystack-0.3.4/singleCellHaystack/tests/testthat/test-haystack.R |only singleCellHaystack-0.3.4/singleCellHaystack/tests/testthat/test-kde2d_faster.R |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/a02_example_highD_default.Rmd |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/a03_example_highD_advanced.Rmd |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/a04_example_spatial_transcriptomics.Rmd |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/a06_example_tsne2D_default.Rmd |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/a07_example_tsne2D_advanced.Rmd |only singleCellHaystack-0.3.4/singleCellHaystack/vignettes/examples/figure |only singleCellHaystack-1.0.0/singleCellHaystack/DESCRIPTION | 39 singleCellHaystack-1.0.0/singleCellHaystack/LICENSE | 4 singleCellHaystack-1.0.0/singleCellHaystack/MD5 | 154 - singleCellHaystack-1.0.0/singleCellHaystack/NAMESPACE | 109 singleCellHaystack-1.0.0/singleCellHaystack/NEWS.md | 32 singleCellHaystack-1.0.0/singleCellHaystack/R/data.R | 28 singleCellHaystack-1.0.0/singleCellHaystack/R/debug.R |only singleCellHaystack-1.0.0/singleCellHaystack/R/haystack.R | 1236 +++++----- singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_IO.R | 134 - singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_clustering.R | 232 - singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_clustering_highD.R | 410 +-- singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_continuous.R |only singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_highD.R | 863 +++--- singleCellHaystack-1.0.0/singleCellHaystack/R/haystack_visualization.R | 497 +--- singleCellHaystack-1.0.0/singleCellHaystack/R/randomization.R |only singleCellHaystack-1.0.0/singleCellHaystack/R/s3.R | 543 ++-- singleCellHaystack-1.0.0/singleCellHaystack/R/singleCellHaystack-package.R | 20 singleCellHaystack-1.0.0/singleCellHaystack/R/sparse.R | 84 singleCellHaystack-1.0.0/singleCellHaystack/build/partial.rdb |only singleCellHaystack-1.0.0/singleCellHaystack/build/vignette.rds |binary singleCellHaystack-1.0.0/singleCellHaystack/inst/CITATION | 28 singleCellHaystack-1.0.0/singleCellHaystack/inst/doc/a01_toy_example.R | 138 - singleCellHaystack-1.0.0/singleCellHaystack/inst/doc/a01_toy_example.Rmd | 227 - singleCellHaystack-1.0.0/singleCellHaystack/inst/doc/a01_toy_example.html | 737 +++-- singleCellHaystack-1.0.0/singleCellHaystack/man/dat.expression.Rd | 20 singleCellHaystack-1.0.0/singleCellHaystack/man/dat.tsne.Rd | 20 singleCellHaystack-1.0.0/singleCellHaystack/man/default_bandwidth.nrd.Rd | 34 singleCellHaystack-1.0.0/singleCellHaystack/man/extract_row_dgRMatrix.Rd | 42 singleCellHaystack-1.0.0/singleCellHaystack/man/extract_row_lgRMatrix.Rd | 42 singleCellHaystack-1.0.0/singleCellHaystack/man/get_D_KL.Rd | 46 singleCellHaystack-1.0.0/singleCellHaystack/man/get_D_KL_continuous_highD.Rd |only singleCellHaystack-1.0.0/singleCellHaystack/man/get_D_KL_highD.Rd | 46 singleCellHaystack-1.0.0/singleCellHaystack/man/get_density.Rd | 62 singleCellHaystack-1.0.0/singleCellHaystack/man/get_dist_two_sets.Rd | 38 singleCellHaystack-1.0.0/singleCellHaystack/man/get_euclidean_distance.Rd | 38 singleCellHaystack-1.0.0/singleCellHaystack/man/get_grid_points.Rd | 42 singleCellHaystack-1.0.0/singleCellHaystack/man/get_log_p_D_KL.Rd | 46 singleCellHaystack-1.0.0/singleCellHaystack/man/get_log_p_D_KL_continuous.Rd |only singleCellHaystack-1.0.0/singleCellHaystack/man/get_parameters_haystack.Rd | 42 singleCellHaystack-1.0.0/singleCellHaystack/man/get_reference.Rd | 38 singleCellHaystack-1.0.0/singleCellHaystack/man/haystack.Rd | 194 - singleCellHaystack-1.0.0/singleCellHaystack/man/haystack_2D.Rd | 72 singleCellHaystack-1.0.0/singleCellHaystack/man/haystack_continuous_highD.Rd |only singleCellHaystack-1.0.0/singleCellHaystack/man/haystack_highD.Rd | 82 singleCellHaystack-1.0.0/singleCellHaystack/man/hclust_haystack.Rd | 77 singleCellHaystack-1.0.0/singleCellHaystack/man/hclust_haystack_highD.Rd | 74 singleCellHaystack-1.0.0/singleCellHaystack/man/hclust_haystack_raw.Rd | 66 singleCellHaystack-1.0.0/singleCellHaystack/man/kde2d_faster.Rd | 32 singleCellHaystack-1.0.0/singleCellHaystack/man/kmeans_haystack.Rd | 54 singleCellHaystack-1.0.0/singleCellHaystack/man/kmeans_haystack_highD.Rd | 80 singleCellHaystack-1.0.0/singleCellHaystack/man/kmeans_haystack_raw.Rd | 70 singleCellHaystack-1.0.0/singleCellHaystack/man/plot_gene_haystack.Rd | 106 singleCellHaystack-1.0.0/singleCellHaystack/man/plot_gene_haystack_raw.Rd | 90 singleCellHaystack-1.0.0/singleCellHaystack/man/plot_gene_set_haystack.Rd | 106 singleCellHaystack-1.0.0/singleCellHaystack/man/plot_gene_set_haystack_raw.Rd | 89 singleCellHaystack-1.0.0/singleCellHaystack/man/plot_rand_fit.Rd |only singleCellHaystack-1.0.0/singleCellHaystack/man/read_haystack.Rd | 50 singleCellHaystack-1.0.0/singleCellHaystack/man/show_result_haystack.Rd | 97 singleCellHaystack-1.0.0/singleCellHaystack/man/singleCellHaystack-package.Rd | 48 singleCellHaystack-1.0.0/singleCellHaystack/man/write_haystack.Rd | 48 singleCellHaystack-1.0.0/singleCellHaystack/tests/testthat.R | 8 singleCellHaystack-1.0.0/singleCellHaystack/tests/testthat/test-extract_row.R | 40 singleCellHaystack-1.0.0/singleCellHaystack/tests/testthat/test-haystack_continuous.R |only singleCellHaystack-1.0.0/singleCellHaystack/tests/testthat/test-haystack_sparse.R | 90 singleCellHaystack-1.0.0/singleCellHaystack/vignettes/a01_toy_example.Rmd | 227 - singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a02_example_scRNAseq.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a03_example_spatial_visium.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a04_example_spatial_slideseqV2.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a05_moca_100k.Rmd | 193 - singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a06_pseudotime.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a07_gene_sets.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/a08_gene_clustering.Rmd |only singleCellHaystack-1.0.0/singleCellHaystack/vignettes/examples/figures |only 83 files changed, 4115 insertions(+), 3949 deletions(-)
More information about singleCellHaystack at CRAN
Permanent link
Title: Connect to 'AWS Athena' using 'Boto3' ('DBI' Interface)
Description: Designed to be compatible with the R package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this 'Python' 'Boto3' Software Development Kit ('SDK')
<https://boto3.amazonaws.com/v1/documentation/api/latest/index.html> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between RAthena versions 2.6.0 dated 2022-05-20 and 2.6.1 dated 2022-12-20
DESCRIPTION | 8 MD5 | 78 +-- NEWS.md | 5 R/Connection.R | 715 ++++++++++++++++------------- R/Driver.R | 4 R/Result.R | 338 +++++++------ R/dplyr_integration.R | 43 + R/fetch_utils.R | 143 +++-- R/utils.R | 383 ++++++++------- README.md | 2 build/vignette.rds |binary inst/doc/aws_athena_query_caching.html | 124 ++--- inst/doc/aws_athena_unload.html | 124 ++--- inst/doc/aws_s3_backend.html | 124 ++--- inst/doc/changing_backend_file_parser.html | 124 ++--- inst/doc/convert_and_save_cost.html | 124 ++--- inst/doc/getting_started.html | 124 ++--- inst/doc/how_to_retry.html | 124 ++--- man/Query.Rd | 6 man/dbClearResult.Rd | 4 man/dbColumnInfo.Rd | 6 man/dbConnect-AthenaDriver-method.Rd | 1 man/dbConvertTable.Rd | 36 - man/dbDataType.Rd | 7 man/dbDisconnect.Rd | 4 man/dbExistsTable.Rd | 11 man/dbFetch.Rd | 6 man/dbGetInfo.Rd | 6 man/dbGetPartition.Rd | 15 man/dbGetQuery.Rd | 4 man/dbGetStatement.Rd | 4 man/dbGetTables.Rd | 6 man/dbHasCompleted.Rd | 4 man/dbIsValid.Rd | 4 man/dbListFields.Rd | 11 man/dbListTables.Rd | 6 man/dbRemoveTable.Rd | 11 man/dbShow.Rd | 15 man/dbStatistics.Rd | 5 man/db_compute.Rd | 2 40 files changed, 1512 insertions(+), 1249 deletions(-)
Title: Connect to 'AWS Athena' using R 'AWS SDK' 'paws' ('DBI'
Interface)
Description: Designed to be compatible with the 'R' package 'DBI' (Database Interface)
when connecting to Amazon Web Service ('AWS') Athena <https://aws.amazon.com/athena/>.
To do this the 'R' 'AWS' Software Development Kit ('SDK') 'paws'
<https://github.com/paws-r/paws> is used as a driver.
Author: Dyfan Jones [aut, cre]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between noctua versions 2.6.0 dated 2022-05-20 and 2.6.1 dated 2022-12-20
DESCRIPTION | 8 MD5 | 78 +-- NEWS.md | 5 R/Connection.R | 689 ++++++++++++++++------------- R/Driver.R | 204 ++++---- R/Result.R | 324 +++++++------ R/dplyr_integration.R | 43 + R/fetch_utils.R | 123 ++--- R/utils.R | 423 ++++++++++------- README.md | 2 build/vignette.rds |binary inst/doc/aws_athena_query_caching.html | 124 ++--- inst/doc/aws_athena_unload.html | 124 ++--- inst/doc/aws_s3_backend.html | 124 ++--- inst/doc/changing_backend_file_parser.html | 124 ++--- inst/doc/convert_and_save_cost.html | 124 ++--- inst/doc/getting_started.html | 124 ++--- inst/doc/how_to_retry.html | 124 ++--- man/Query.Rd | 6 man/dbClearResult.Rd | 4 man/dbColumnInfo.Rd | 6 man/dbConnect-AthenaDriver-method.Rd | 52 +- man/dbConvertTable.Rd | 36 - man/dbDataType.Rd | 7 man/dbDisconnect.Rd | 4 man/dbExistsTable.Rd | 11 man/dbFetch.Rd | 4 man/dbGetInfo.Rd | 6 man/dbGetPartition.Rd | 15 man/dbGetQuery.Rd | 4 man/dbGetStatement.Rd | 4 man/dbGetTables.Rd | 6 man/dbHasCompleted.Rd | 4 man/dbIsValid.Rd | 4 man/dbListFields.Rd | 11 man/dbListTables.Rd | 6 man/dbRemoveTable.Rd | 11 man/dbShow.Rd | 15 man/dbStatistics.Rd | 5 man/db_compute.Rd | 2 40 files changed, 1632 insertions(+), 1358 deletions(-)
Title: Mixed Models for Repeated Measures
Description: Mixed models for repeated measures (MMRM) are a popular
choice for analyzing longitudinal continuous outcomes in randomized
clinical trials and beyond; see Cnaan, Laird and Slasor (1997)
<doi:10.1002/(SICI)1097-0258(19971030)16:20%3C2349::AID-SIM667%3E3.0.CO;2-E>
for a tutorial and Mallinckrodt, Lane and Schnell (2008)
<doi:10.1177/009286150804200402> for a review. This package implements
MMRM based on the marginal linear model without random effects using
Template Model Builder ('TMB') which enables fast and robust model
fitting. Users can specify a variety of covariance matrices, weight
observations, fit models with restricted or standard maximum
likelihood inference, perform hypothesis testing with Satterthwaite or
Kenward-Roger adjustment, and extract least square means
estimates by using 'emmeans'.
Author: Daniel Sabanes Bove [aut, cre],
Julia Dedic [aut],
Doug Kelkhoff [aut],
Kevin Kunzmann [aut],
Brian Matthew Lang [aut],
Liming Li [aut],
Ya Wang [aut],
Craig Gower-Page [ctb],
Boehringer Ingelheim Ltd. [cph, fnd],
Gilead Sciences, Inc. [cph, fnd],
F. [...truncated...]
Maintainer: Daniel Sabanes Bove <daniel.sabanes_bove@roche.com>
Diff between mmrm versions 0.1.3 dated 2022-10-18 and 0.2.2 dated 2022-12-20
mmrm-0.1.3/mmrm/src/init.h |only mmrm-0.1.3/mmrm/tests/testthat/test-output.R |only mmrm-0.1.3/mmrm/tests/testthat/test-parallel.R |only mmrm-0.2.2/mmrm/DESCRIPTION | 29 mmrm-0.2.2/mmrm/MD5 | 165 +- mmrm-0.2.2/mmrm/NAMESPACE | 2 mmrm-0.2.2/mmrm/NEWS.md | 40 mmrm-0.2.2/mmrm/R/component.R | 18 mmrm-0.2.2/mmrm/R/emmeans.R | 2 mmrm-0.2.2/mmrm/R/fit.R | 238 ++- mmrm-0.2.2/mmrm/R/kenwardroger.R |only mmrm-0.2.2/mmrm/R/mmrm-methods.R | 6 mmrm-0.2.2/mmrm/R/mmrm-package.R | 3 mmrm-0.2.2/mmrm/R/satterthwaite.R | 84 - mmrm-0.2.2/mmrm/R/testing.R |only mmrm-0.2.2/mmrm/R/tmb.R | 58 mmrm-0.2.2/mmrm/R/utils.R | 150 ++ mmrm-0.2.2/mmrm/build/partial.rdb |binary mmrm-0.2.2/mmrm/build/vignette.rds |binary mmrm-0.2.2/mmrm/inst/REFERENCES.bib | 46 mmrm-0.2.2/mmrm/inst/WORDLIST | 42 mmrm-0.2.2/mmrm/inst/doc/algorithm.Rmd | 2 mmrm-0.2.2/mmrm/inst/doc/algorithm.html | 185 +- mmrm-0.2.2/mmrm/inst/doc/covariance.Rmd | 4 mmrm-0.2.2/mmrm/inst/doc/covariance.html | 197 +-- mmrm-0.2.2/mmrm/inst/doc/introduction.R | 84 - mmrm-0.2.2/mmrm/inst/doc/introduction.Rmd | 224 ++- mmrm-0.2.2/mmrm/inst/doc/introduction.html | 1174 ++++++++++-------- mmrm-0.2.2/mmrm/inst/doc/kenward.R |only mmrm-0.2.2/mmrm/inst/doc/kenward.Rmd |only mmrm-0.2.2/mmrm/inst/doc/kenward.html |only mmrm-0.2.2/mmrm/inst/doc/package_structure.Rmd | 4 mmrm-0.2.2/mmrm/inst/doc/package_structure.html | 182 +- mmrm-0.2.2/mmrm/inst/doc/satterthwaite.R |only mmrm-0.2.2/mmrm/inst/doc/satterthwaite.Rmd |only mmrm-0.2.2/mmrm/inst/doc/satterthwaite.html |only mmrm-0.2.2/mmrm/man/component.Rd | 12 mmrm-0.2.2/mmrm/man/df_1d.Rd | 6 mmrm-0.2.2/mmrm/man/df_md.Rd | 9 mmrm-0.2.2/mmrm/man/fit_mmrm.Rd | 1 mmrm-0.2.2/mmrm/man/fit_single_optimizer.Rd | 18 mmrm-0.2.2/mmrm/man/free_cores.Rd | 3 mmrm-0.2.2/mmrm/man/h_covbeta_fun.Rd | 3 mmrm-0.2.2/mmrm/man/h_df_1d_kr.Rd |only mmrm-0.2.2/mmrm/man/h_df_1d_list.Rd | 3 mmrm-0.2.2/mmrm/man/h_df_1d_sat.Rd |only mmrm-0.2.2/mmrm/man/h_df_md_from_1d.Rd | 2 mmrm-0.2.2/mmrm/man/h_df_md_kr.Rd |only mmrm-0.2.2/mmrm/man/h_df_md_list.Rd | 3 mmrm-0.2.2/mmrm/man/h_df_md_sat.Rd |only mmrm-0.2.2/mmrm/man/h_get_kr_comp.Rd |only mmrm-0.2.2/mmrm/man/h_get_optimizers.Rd |only mmrm-0.2.2/mmrm/man/h_gradient.Rd | 3 mmrm-0.2.2/mmrm/man/h_jac_col_as_matrix.Rd | 2 mmrm-0.2.2/mmrm/man/h_jac_list.Rd | 2 mmrm-0.2.2/mmrm/man/h_kr_df.Rd |only mmrm-0.2.2/mmrm/man/h_md_denom_df.Rd | 2 mmrm-0.2.2/mmrm/man/h_mmrm_tmb_data.Rd | 11 mmrm-0.2.2/mmrm/man/h_mmrm_tmb_extract_terms.Rd | 2 mmrm-0.2.2/mmrm/man/h_optimizer_fun.Rd |only mmrm-0.2.2/mmrm/man/h_partial_fun_args.Rd |only mmrm-0.2.2/mmrm/man/h_print_cov.Rd | 2 mmrm-0.2.2/mmrm/man/h_quad_form.Rd | 5 mmrm-0.2.2/mmrm/man/h_split_control.Rd |only mmrm-0.2.2/mmrm/man/h_tr.Rd |only mmrm-0.2.2/mmrm/man/h_var_adj.Rd |only mmrm-0.2.2/mmrm/man/mmrm-package.Rd | 2 mmrm-0.2.2/mmrm/man/mmrm.Rd | 66 - mmrm-0.2.2/mmrm/man/mmrm_control.Rd | 39 mmrm-0.2.2/mmrm/man/refit_multiple_optimizers.Rd | 15 mmrm-0.2.2/mmrm/src/chol_derivative.h |only mmrm-0.2.2/mmrm/src/covariance.h | 7 mmrm-0.2.2/mmrm/src/exports.cpp |only mmrm-0.2.2/mmrm/src/kr_comp.cpp |only mmrm-0.2.2/mmrm/src/mmrm.cpp | 1 mmrm-0.2.2/mmrm/src/test-derivatives.cpp |only mmrm-0.2.2/mmrm/src/test-utility.cpp |only mmrm-0.2.2/mmrm/src/test-utils.cpp | 8 mmrm-0.2.2/mmrm/src/testthat-helpers.h | 2 mmrm-0.2.2/mmrm/src/tmb_includes.h | 50 mmrm-0.2.2/mmrm/src/utility.cpp |only mmrm-0.2.2/mmrm/src/utils.h | 20 mmrm-0.2.2/mmrm/tests/testthat/_snaps/krcomp.md |only mmrm-0.2.2/mmrm/tests/testthat/_snaps/mmrm-methods.md | 15 mmrm-0.2.2/mmrm/tests/testthat/_snaps/tmb-methods.md | 10 mmrm-0.2.2/mmrm/tests/testthat/helper-examples.R | 26 mmrm-0.2.2/mmrm/tests/testthat/test-component.R | 15 mmrm-0.2.2/mmrm/tests/testthat/test-emmeans.R | 37 mmrm-0.2.2/mmrm/tests/testthat/test-fit.R | 100 + mmrm-0.2.2/mmrm/tests/testthat/test-krcomp.R |only mmrm-0.2.2/mmrm/tests/testthat/test-mmrm-methods.R | 2 mmrm-0.2.2/mmrm/tests/testthat/test-satterthwaite.R | 32 mmrm-0.2.2/mmrm/tests/testthat/test-testings.R |only mmrm-0.2.2/mmrm/tests/testthat/test-tmb.R | 319 +++- mmrm-0.2.2/mmrm/tests/testthat/test-utils.R |only mmrm-0.2.2/mmrm/vignettes/algorithm.Rmd | 2 mmrm-0.2.2/mmrm/vignettes/covariance.Rmd | 4 mmrm-0.2.2/mmrm/vignettes/introduction.Rmd | 224 ++- mmrm-0.2.2/mmrm/vignettes/kenward.Rmd |only mmrm-0.2.2/mmrm/vignettes/package_structure.Rmd | 4 mmrm-0.2.2/mmrm/vignettes/satterthwaite.Rmd |only 101 files changed, 2648 insertions(+), 1380 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.10 dated 2022-11-10 and 1.1.11 dated 2022-12-20
DESCRIPTION | 10 +- MD5 | 35 +++---- NEWS | 5 + R/country.lang.R | 2 R/glottolog.R | 8 - R/polygon.points_fd.R | 34 +------ R/zzz.r | 2 data/glottolog.RData |binary inst/doc/lingtypology_creating_maps.html | 115 +++++++++++------------- inst/doc/lingtypology_db_API.html | 115 +++++++++++------------- inst/doc/lingtypology_dplyr.html | 115 +++++++++++------------- inst/doc/lingtypology_glottolog_functions.Rmd | 2 inst/doc/lingtypology_glottolog_functions.html | 119 ++++++++++++------------- inst/doc/lingtypology_intro.html | 115 +++++++++++------------- man/glottolog.Rd | 8 - man/polygon.points_fd.Rd | 2 tests/testthat/test-glottolog-database.R | 4 tests/testthat/test-ids-feature.R |only vignettes/lingtypology_glottolog_functions.Rmd | 2 19 files changed, 339 insertions(+), 354 deletions(-)
Title: Generate Isolines and Isobands from Regularly Spaced Elevation
Grids
Description: A fast C++ implementation to generate contour lines
(isolines) and contour polygons (isobands) from regularly spaced grids
containing elevation data.
Author: Hadley Wickham [aut, cre] ,
Claus O. Wilke [aut] ,
Thomas Lin Pedersen [aut]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between isoband versions 0.2.6 dated 2022-10-06 and 0.2.7 dated 2022-12-20
isoband-0.2.6/isoband/man/figures/isoband-logo.png |only isoband-0.2.6/isoband/src/testthat |only isoband-0.2.7/isoband/DESCRIPTION | 55 +++--- isoband-0.2.7/isoband/MD5 | 36 ++-- isoband-0.2.7/isoband/NEWS.md | 7 isoband-0.2.7/isoband/R/catch-routine-registration.R | 8 isoband-0.2.7/isoband/README.md | 21 +- isoband-0.2.7/isoband/build/vignette.rds |binary isoband-0.2.7/isoband/inst/doc/isoband1.html | 158 +++++++++---------- isoband-0.2.7/isoband/inst/doc/isoband3.html | 140 ++++++++-------- isoband-0.2.7/isoband/man/figures/logo.png |only isoband-0.2.7/isoband/man/isoband-package.Rd | 12 - isoband-0.2.7/isoband/src/Makevars | 3 isoband-0.2.7/isoband/src/Makevars.win | 3 isoband-0.2.7/isoband/src/init.cpp | 7 isoband-0.2.7/isoband/src/separate-polygons.cpp | 2 isoband-0.2.7/isoband/src/test-clip-lines.cpp | 37 ++-- isoband-0.2.7/isoband/src/test-runner.cpp | 7 isoband-0.2.7/isoband/src/test-separate-polygons.cpp | 3 isoband-0.2.7/isoband/tests/testthat/test-cpp.R | 3 20 files changed, 262 insertions(+), 240 deletions(-)
Title: A 'Bootstrap 4' Version of 'shinydashboard'
Description: Make 'Bootstrap 4' Shiny dashboards. Use the full power
of 'AdminLTE3', a dashboard template built on top of 'Bootstrap 4'
<https://github.com/ColorlibHQ/AdminLTE>.
Author: David Granjon [aut, cre],
RinteRface [cph],
Almasaeed Studio [ctb, cph] ,
Winston Chang [ctb, cph]
Maintainer: David Granjon <dgranjon@ymail.com>
Diff between bs4Dash versions 2.2.0 dated 2022-12-19 and 2.2.1 dated 2022-12-20
bs4Dash-2.2.0/bs4Dash/inst/bs4Dash-2.2.0.9000 |only bs4Dash-2.2.1/bs4Dash/DESCRIPTION | 6 bs4Dash-2.2.1/bs4Dash/MD5 | 116 +++++----- bs4Dash-2.2.1/bs4Dash/NEWS.md | 2 bs4Dash-2.2.1/bs4Dash/R/aliases.R | 2 bs4Dash-2.2.1/bs4Dash/R/auto-color.R | 2 bs4Dash-2.2.1/bs4Dash/R/bs4DashGallery.R | 2 bs4Dash-2.2.1/bs4Dash/R/cards.R | 12 - bs4Dash-2.2.1/bs4Dash/R/dashboardBody.R | 2 bs4Dash-2.2.1/bs4Dash/R/dashboardControlbar.R | 2 bs4Dash-2.2.1/bs4Dash/R/dashboardHeader.R | 8 bs4Dash-2.2.1/bs4Dash/R/dashboardPage.R | 2 bs4Dash-2.2.1/bs4Dash/R/dashboardSidebar.R | 16 - bs4Dash-2.2.1/bs4Dash/R/deps.R | 2 bs4Dash-2.2.1/bs4Dash/R/feedbacks.R | 2 bs4Dash-2.2.1/bs4Dash/R/grid.R | 4 bs4Dash-2.2.1/bs4Dash/R/inputs.R | 2 bs4Dash-2.2.1/bs4Dash/R/render-functions.R | 2 bs4Dash-2.2.1/bs4Dash/R/skinSelector.R | 2 bs4Dash-2.2.1/bs4Dash/R/useful-items.R | 2 bs4Dash-2.2.1/bs4Dash/R/utils.R | 6 bs4Dash-2.2.1/bs4Dash/build/bs4Dash.pdf |binary bs4Dash-2.2.1/bs4Dash/inst/bs4Dash-2.2.1 |only bs4Dash-2.2.1/bs4Dash/inst/doc/bs4Dash.html | 9 bs4Dash-2.2.1/bs4Dash/inst/doc/css-preloader.html | 9 bs4Dash-2.2.1/bs4Dash/inst/doc/extra-elements.html | 16 + bs4Dash-2.2.1/bs4Dash/inst/doc/improved-boxes.html | 37 +++ bs4Dash-2.2.1/bs4Dash/inst/doc/more-skins.html | 16 + bs4Dash-2.2.1/bs4Dash/inst/examples/showcase/app.R | 26 +- bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/accordions/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/box-api/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/box-dropdown/app.R | 4 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/box-sidebar/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/controlbar-api/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/dashboardUser/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/descriptionBlock/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/fresh-theming/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/preloader/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/scrollToTop/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/skinSelector/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/userBox/app.R | 2 bs4Dash-2.2.1/bs4Dash/inst/examples/vignettes-demos/userMessages/app.R | 4 bs4Dash-2.2.1/bs4Dash/inst/tests/test-gallery.R | 2 bs4Dash-2.2.1/bs4Dash/man/box.Rd | 2 bs4Dash-2.2.1/bs4Dash/man/boxSidebar.Rd | 6 bs4Dash-2.2.1/bs4Dash/man/column.Rd | 2 bs4Dash-2.2.1/bs4Dash/man/dashboardHeader.Rd | 4 bs4Dash-2.2.1/bs4Dash/man/dashboardSidebar.Rd | 18 - bs4Dash-2.2.1/bs4Dash/man/dropdownMenu.Rd | 2 bs4Dash-2.2.1/bs4Dash/man/infoBox.Rd | 4 bs4Dash-2.2.1/bs4Dash/man/renderMenu.Rd | 2 bs4Dash-2.2.1/bs4Dash/man/userMessage.Rd | 2 bs4Dash-2.2.1/bs4Dash/man/valueBox.Rd | 4 bs4Dash-2.2.1/bs4Dash/tests/testthat/test-bs4CardLabel.R | 2 bs4Dash-2.2.1/bs4Dash/tests/testthat/test-bs4Cards.R | 2 bs4Dash-2.2.1/bs4Dash/tests/testthat/test-bs4InfoBox.R | 10 bs4Dash-2.2.1/bs4Dash/tests/testthat/test-bs4ValueBox.R | 6 57 files changed, 246 insertions(+), 159 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-04 1.0.3
2019-12-10 1.0.2
2019-04-03 1.0.1
2019-02-01 1.0
Title: Functions for Handling Dates
Description: Functions for handling dates.
Author: Terry Therneau [aut],
Thomas Lumley [trl] ,
Kjetil Halvorsen [trl] ,
Kurt Hornik [trl, ctb, cre] ,
R Core Team [ctb]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between date versions 1.2-40 dated 2022-10-18 and 1.2-41 dated 2022-12-20
ChangeLog | 6 ++++++ DESCRIPTION | 6 +++--- MD5 | 6 +++--- src/char_date.c | 23 +++++++++++++---------- 4 files changed, 25 insertions(+), 16 deletions(-)
Title: Search Algorithms and Loss Functions for Bayesian Clustering
Description: The SALSO algorithm is an efficient randomized greedy search method to find a point estimate for a random partition based on a loss function and posterior Monte Carlo samples. The algorithm is implemented for many loss functions, including the Binder loss and a generalization of the variation of information loss, both of which allow for unequal weights on the two types of clustering mistakes. Efficient implementations are also provided for Monte Carlo estimation of the posterior expected loss of a given clustering estimate. See Dahl, Johnson, Müller (2022) <doi:10.1080/10618600.2022.2069779>.
Author: David B. Dahl [aut, cre] ,
Devin J. Johnson [aut] ,
Peter Mueller [aut],
Alex Crichton [cph] ,
"bluss" Ulrik Sverdrup [cph] ,
Brendan Zabarauskas [cph] ,
David B. Dahl [cph] ,
David Tolnay [cph] ,
DutchGhost [cph] ,
Enthought, Inc. [cph] ,
Gilad Naama [...truncated...]
Maintainer: David B. Dahl <dahl@stat.byu.edu>
Diff between salso versions 0.3.27 dated 2022-12-02 and 0.3.29 dated 2022-12-20
salso-0.3.27/salso/src/README.md |only salso-0.3.29/salso/DESCRIPTION | 94 +++++++++++++++++--- salso-0.3.29/salso/MD5 | 15 +-- salso-0.3.29/salso/NEWS | 3 salso-0.3.29/salso/inst/cargo.log | 9 - salso-0.3.29/salso/src/rust/Cargo.lock | 20 ++-- salso-0.3.29/salso/src/rust/roxido/Cargo.lock | 16 +-- salso-0.3.29/salso/src/rust/roxido_macro/Cargo.lock | 16 +-- salso-0.3.29/salso/src/rust/vendor.tar.xz |binary 9 files changed, 122 insertions(+), 51 deletions(-)
Title: Import and Analyse Ego-Centered Network Data
Description: Tools for importing, analyzing and visualizing ego-centered
network data. Supports several data formats, including the export formats of
'EgoNet', 'EgoWeb 2.0' and 'openeddi'. An interactive (shiny) app for the
intuitive visualization of ego-centered networks is provided. Also included
are procedures for creating and visualizing Clustered Graphs
(Lerner 2008 <DOI:10.1109/PACIFICVIS.2008.4475458>).
Author: Till Krenz [aut, cre],
Pavel N. Krivitsky [aut],
Raffaele Vacca [aut],
Michal Bojanowski [aut] ,
Markus Gamper [ctb],
Andreas Herz [aut],
Christopher McCarty [ctb]
Maintainer: Till Krenz <egor@tillt.net>
Diff between egor versions 1.22.5 dated 2022-05-13 and 1.22.12 dated 2022-12-20
DESCRIPTION | 12 MD5 | 51 +-- NAMESPACE | 1 NEWS.md | 8 R/as_egor.R | 8 R/clustered.graphs.R | 42 +- R/dplyr_methods.R | 4 R/egor.R | 89 ++++-- R/make_egor.R | 2 R/plot_ego_gram.R | 16 - build/partial.rdb |only build/vignette.rds |binary inst/check_and_release.R | 7 inst/doc/egor_allbus.html | 136 +++++---- inst/doc/qualtrics.html | 207 +++++++------- inst/doc/using_egor.html | 465 +++++++++++++++++---------------- inst/qualtrics/qualtrics_responses.csv | 16 - man/egor-package.Rd | 2 man/egor.Rd | 9 man/helper.Rd | 18 - man/plot_egor.Rd | 6 man/read_egonet.Rd | 3 man/threefiles_to_egor.Rd | 16 - man/twofiles_to_egor.Rd | 3 tests/testthat/test-clustered_graphs.R | 11 tests/testthat/test-dplyr_methods.R | 12 tests/testthat/test-plot_egor.R | 32 ++ 27 files changed, 646 insertions(+), 530 deletions(-)