Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum
Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels.
Author: Emmanuel Sikali [pdr],
Paul Bailey [aut, cre],
Claire Kelley [aut],
Trang Nguyen [aut],
Huade Huo [aut],
Eric Buehler [ctb],
Christian Kjeldsen [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between WeMix versions 3.2.4 dated 2022-10-05 and 3.3.0 dated 2022-12-21
DESCRIPTION | 10 MD5 | 20 NAMESPACE | 1 R/adaptiveQuad.R | 332 ++++++----- build/vignette.rds |binary inst/NEWS.Rd | 17 inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.pdf |binary inst/doc/Weighted_Linear_Mixed_Effects_Models.pdf |binary man/mix.Rd | 1 tests/testthat/test-0-errors.R |only tests/testthat/test-1-main.R | 3 vignettes/glm.pdf |only 12 files changed, 242 insertions(+), 142 deletions(-)
Title: Extra 'Recipes' for Text Processing
Description: Converting text to numerical features requires specifically
created procedures, which are implemented as steps according to the
'recipes' package. These steps allows for tokenization, filtering,
counting (tf and tfidf) and feature hashing.
Author: Emil Hvitfeldt [aut, cre]
Maintainer: Emil Hvitfeldt <emilhhvitfeldt@gmail.com>
Diff between textrecipes versions 1.0.1 dated 2022-10-05 and 1.0.2 dated 2022-12-21
textrecipes-1.0.1/textrecipes/R/RcppExports.R |only textrecipes-1.0.1/textrecipes/man/rcpp_ngram.Rd |only textrecipes-1.0.1/textrecipes/src/RcppExports.cpp |only textrecipes-1.0.2/textrecipes/DESCRIPTION | 14 - textrecipes-1.0.2/textrecipes/MD5 | 91 +++--- textrecipes-1.0.2/textrecipes/NAMESPACE | 5 textrecipes-1.0.2/textrecipes/NEWS.md | 8 textrecipes-1.0.2/textrecipes/R/aaa.R | 15 - textrecipes-1.0.2/textrecipes/R/clean_levels.R | 6 textrecipes-1.0.2/textrecipes/R/clean_names.R | 6 textrecipes-1.0.2/textrecipes/R/cpp11.R |only textrecipes-1.0.2/textrecipes/R/embeddings.R | 6 textrecipes-1.0.2/textrecipes/R/hashing.R | 3 textrecipes-1.0.2/textrecipes/R/hashing_dummy.R | 2 textrecipes-1.0.2/textrecipes/R/sequence_onehot.R | 4 textrecipes-1.0.2/textrecipes/R/text_normalization.R | 2 textrecipes-1.0.2/textrecipes/R/textrecipes-package.R | 1 textrecipes-1.0.2/textrecipes/R/tf.R | 4 textrecipes-1.0.2/textrecipes/R/tokenize.R | 6 textrecipes-1.0.2/textrecipes/R/tokenizer-sentencepiece.R | 2 textrecipes-1.0.2/textrecipes/R/tokenizer-tokenizersbpe.R | 2 textrecipes-1.0.2/textrecipes/R/tokenlist.R | 4 textrecipes-1.0.2/textrecipes/R/tokenmerge.R | 6 textrecipes-1.0.2/textrecipes/inst/doc/Working-with-n-grams.R | 10 textrecipes-1.0.2/textrecipes/inst/doc/Working-with-n-grams.Rmd | 10 textrecipes-1.0.2/textrecipes/inst/doc/Working-with-n-grams.html | 50 +-- textrecipes-1.0.2/textrecipes/inst/doc/cookbook---using-more-complex-recipes-involving-text.html | 18 - textrecipes-1.0.2/textrecipes/man/required_pkgs.step.Rd | 23 + textrecipes-1.0.2/textrecipes/man/step_text_normalization.Rd | 2 textrecipes-1.0.2/textrecipes/man/step_tokenize.Rd | 1 textrecipes-1.0.2/textrecipes/src/cpp11.cpp |only textrecipes-1.0.2/textrecipes/src/ngram.cpp | 137 +++++----- textrecipes-1.0.2/textrecipes/tests/testthat/_snaps/ngram.md | 12 textrecipes-1.0.2/textrecipes/tests/testthat/_snaps/tokenize.md | 2 textrecipes-1.0.2/textrecipes/tests/testthat/_snaps/tokenlist.md | 12 textrecipes-1.0.2/textrecipes/tests/testthat/test-bpe_tokenize.R | 2 textrecipes-1.0.2/textrecipes/tests/testthat/test-embeddings.R | 22 - textrecipes-1.0.2/textrecipes/tests/testthat/test-hashing.R | 2 textrecipes-1.0.2/textrecipes/tests/testthat/test-hashing_dummy.R | 6 textrecipes-1.0.2/textrecipes/tests/testthat/test-lemma.R | 20 - textrecipes-1.0.2/textrecipes/tests/testthat/test-ngram.R | 32 +- textrecipes-1.0.2/textrecipes/tests/testthat/test-pos_filter.R | 24 - textrecipes-1.0.2/textrecipes/tests/testthat/test-sequence_onehot.R | 6 textrecipes-1.0.2/textrecipes/tests/testthat/test-textfeature.R | 6 textrecipes-1.0.2/textrecipes/tests/testthat/test-tf.R | 44 +-- textrecipes-1.0.2/textrecipes/tests/testthat/test-tokenize.R | 2 textrecipes-1.0.2/textrecipes/tests/testthat/test-tokenmerge.R | 4 textrecipes-1.0.2/textrecipes/tests/testthat/test-untokenize.R | 2 textrecipes-1.0.2/textrecipes/vignettes/Working-with-n-grams.Rmd | 10 49 files changed, 322 insertions(+), 324 deletions(-)
Title: Single-Species, Multi-Species, and Integrated Spatial Occupancy
Models
Description: Fits single-species, multi-species, and integrated non-spatial and spatial occupancy models using Markov Chain Monte Carlo (MCMC). Models are fit using Polya-Gamma data augmentation detailed in Polson, Scott, and Windle (2013) <doi:10.1080/01621459.2013.829001>. Spatial models are fit using either Gaussian processes or Nearest Neighbor Gaussian Processes (NNGP) for large spatial datasets. Details on NNGP models are given in Datta, Banerjee, Finley, and Gelfand (2016) <doi:10.1080/01621459.2015.1044091> and Finley, Datta, and Banerjee (2020) <arXiv:2001.09111>. Provides functionality for data integration of multiple single-species occupancy data sets using a joint likelihood framework. Details on data integration are given in Miller, Pacifici, Sanderlin, and Reich (2019) <doi:10.1111/2041-210X.13110>. Details on single-species and multi-species models are found in MacKenzie, Nichols, Lachman, Droege, Royle, and Langtimm (2002) <doi:10.1890/0012-9658(2002)083[2 [...truncated...]
Author: Jeffrey Doser [aut, cre],
Andrew Finley [aut],
Marc Kery [ctb]
Maintainer: Jeffrey Doser <doserjef@msu.edu>
Diff between spOccupancy versions 0.5.1 dated 2022-12-08 and 0.5.2 dated 2022-12-21
DESCRIPTION | 6 - MD5 | 68 +++++++++---------- NEWS.md | 4 + R/PGOcc.R | 37 +++++----- R/generics.R | 155 ++++++++++++++++++++++++++++++++++++++++++--- R/intPGOcc.R | 82 ++++++++++++++++------- R/lfMsPGOcc.R | 34 ++++----- R/msPGOcc.R | 36 +++++----- R/ppcOcc.R | 97 +++++++++++++++++++++++++++- R/sfMsPGOcc.R | 36 +++++----- R/simIntOcc.R | 22 ++++-- R/simMsOcc.R | 34 ++++++--- R/simOcc.R | 38 ++++++----- R/simTOcc.R | 31 ++++++--- R/spIntPGOcc.R | 153 +++++++++++++++++++++++++++++++------------- R/spMsPGOcc.R | 67 +++++++++---------- R/spPGOcc.R | 70 +++++++++----------- R/stPGOcc.R | 2 R/svcPGOcc.R | 38 +++++------ R/svcTPGOcc.R | 2 R/tPGOcc.R | 2 R/waicOcc.R | 14 ++-- README.md | 40 +++++------ man/hbef2015.rda.Rd | 2 man/hbefTrends.rda.Rd | 2 man/neon2015.rda.Rd | 2 man/simIntOcc.Rd | 4 - man/simMsOcc.Rd | 4 - man/simOcc.Rd | 4 - man/simTOcc.Rd | 4 - man/spOccupancy-package.Rd | 6 - man/stPGOcc.Rd | 2 man/svcTPGOcc.Rd | 2 man/tPGOcc.Rd | 2 src/init.cpp | 2 35 files changed, 734 insertions(+), 370 deletions(-)
Title: Statistical Inference for Box-Cox Based Receiver Operating
Characteristic Curves
Description: Generation of Box-Cox based ROC curves and several aspects of inferences and hypothesis testing. Can be used when inferences for one biomarker (Bantis LE, Nakas CT, Reiser B. (2018) <doi:10.1002/bimj.201700107>) are of interest or when comparisons of two correlated biomarkers (Bantis LE, Nakas CT, Reiser B. (2021) <doi:10.1002/bimj.202000128>) are of interest. Provides inferences and comparisons around the AUC, the Youden index, the sensitivity at a given specificity level (and vice versa), the optimal operating point of the ROC curve (in the Youden sense), and the Youden based cutoff.
Author: Leonidas Bantis [aut],
Benjamin Brewer [cre, ctb],
Christos Nakas [ctb],
Benjamin Reiser [ctb]
Maintainer: Benjamin Brewer <tennisbenj@gmail.com>
Diff between rocbc versions 0.2.0 dated 2022-11-15 and 0.3.0 dated 2022-12-21
DESCRIPTION | 8 - MD5 | 34 ++-- NAMESPACE | 1 R/checkboxcox.R | 16 +- R/comparebcAUC.R | 34 +++- R/comparebcJ.R | 42 +++-- R/comparebcSens.R | 38 +++-- R/comparebcSpec.R | 38 +++-- R/rocboxcox.R | 64 ++++---- R/rocboxcoxCI.R | 27 ++- inst/doc/documentation_rocbc.R | 272 +++++++++++++++++++++++------------- inst/doc/documentation_rocbc.Rmd | 280 ++++++++++++++++++++++++-------------- inst/doc/documentation_rocbc.html | 84 +++++------ man/comparebcAUC.Rd | 1 man/comparebcJ.Rd | 1 man/comparebcSens.Rd | 1 man/comparebcSpec.Rd | 1 vignettes/documentation_rocbc.Rmd | 280 ++++++++++++++++++++++++-------------- 18 files changed, 759 insertions(+), 463 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-07 1.0.9
2021-10-16 1.0.7
2021-05-14 1.0.2
2021-03-29 1.0.1
2021-03-21 1.0.0
2020-11-30 0.1.5
2020-09-02 0.1.4
2020-07-20 0.1.3
2020-03-05 0.1.1
2020-03-04 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-14 1.0.7
2022-10-09 1.0.6
2022-07-19 1.0.5
2022-06-27 1.0.2
Title: Supporting Functions for Packages Maintained by 'Yihui Xie'
Description: Miscellaneous functions commonly used in other packages maintained by 'Yihui Xie'.
Author: Yihui Xie [aut, cre, cph] ,
Wush Wu [ctb],
Daijiang Li [ctb],
Xianying Tan [ctb],
Salim Brueggemann [ctb] ,
Christophe Dervieux [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between xfun versions 0.35 dated 2022-11-16 and 0.36 dated 2022-12-21
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/packages.R | 2 +- R/paths.R | 17 ++++++++++++++++- inst/doc/xfun.html | 6 +++--- man/news2md.Rd | 3 ++- man/normalize_path.Rd | 4 +++- tests/test-cran/test-paths.R | 13 +++++++++++++ 9 files changed, 54 insertions(+), 19 deletions(-)
Title: Create Interactive Carousels with the 'JavaScript' 'Slick'
Library
Description: Create and customize interactive carousels
using the 'Slick' 'JavaScript' library and the
'htmlwidgets' package. The carousels can contain
plots produced in R, images, 'iframes', videos and
other 'htmlwidgets'. These carousels can be created
directly from the R console, and viewed in the 'RStudio'
internal viewer, in 'Shiny' apps and R Markdown documents.
Author: Jonathan Sidi [aut, cre]
Maintainer: Jonathan Sidi <yonicd@gmail.com>
Diff between slickR versions 0.5.0 dated 2020-12-18 and 0.6.0 dated 2022-12-21
slickR-0.5.0/slickR/R/deprecated.R |only slickR-0.5.0/slickR/man/getHelp.Rd |only slickR-0.5.0/slickR/man/slickpdf.Rd |only slickR-0.6.0/slickR/DESCRIPTION | 12 slickR-0.6.0/slickR/LICENSE | 4 slickR-0.6.0/slickR/MD5 | 180 slickR-0.6.0/slickR/NAMESPACE | 60 slickR-0.6.0/slickR/NEWS.md | 89 slickR-0.6.0/slickR/R/dom_utils.R | 190 slickR-0.6.0/slickR/R/methods.R | 240 slickR-0.6.0/slickR/R/nba_player_logo-data.R | 24 slickR-0.6.0/slickR/R/nba_team_logo-data.R | 22 slickR-0.6.0/slickR/R/readImage.R | 78 slickR-0.6.0/slickR/R/settings.R | 472 slickR-0.6.0/slickR/R/shiny.R |only slickR-0.6.0/slickR/R/slickR.R | 355 slickR-0.6.0/slickR/R/slick_div.R | 202 slickR-0.6.0/slickR/README.md | 72 slickR-0.6.0/slickR/build/slickR.pdf |binary slickR-0.6.0/slickR/build/vignette.rds |binary slickR-0.6.0/slickR/inst/doc/basics.R | 250 slickR-0.6.0/slickR/inst/doc/basics.Rmd | 366 slickR-0.6.0/slickR/inst/doc/basics.html | 5480 ++++----- slickR-0.6.0/slickR/inst/doc/doms.R | 110 slickR-0.6.0/slickR/inst/doc/doms.Rmd | 210 slickR-0.6.0/slickR/inst/doc/doms.html | 5310 ++++---- slickR-0.6.0/slickR/inst/doc/iframes.R | 104 slickR-0.6.0/slickR/inst/doc/iframes.Rmd | 164 slickR-0.6.0/slickR/inst/doc/iframes.html | 5283 ++++---- slickR-0.6.0/slickR/inst/doc/pdfs.R | 56 slickR-0.6.0/slickR/inst/doc/pdfs.Rmd | 100 slickR-0.6.0/slickR/inst/doc/pdfs.html | 5210 ++++---- slickR-0.6.0/slickR/inst/doc/plots.R | 140 slickR-0.6.0/slickR/inst/doc/plots.Rmd | 198 slickR-0.6.0/slickR/inst/doc/plots.html | 882 - slickR-0.6.0/slickR/inst/doc/shiny.R | 252 slickR-0.6.0/slickR/inst/doc/shiny.Rmd | 312 slickR-0.6.0/slickR/inst/doc/shiny.html | 1003 - slickR-0.6.0/slickR/inst/doc/tests_and_coverage.R | 14 slickR-0.6.0/slickR/inst/doc/tests_and_coverage.Rmd | 228 slickR-0.6.0/slickR/inst/doc/tests_and_coverage.html | 1450 +- slickR-0.6.0/slickR/inst/htmlwidgets/lib/css-resize/ElementQueries.js | 1060 - slickR-0.6.0/slickR/inst/htmlwidgets/lib/css-resize/ResizeSensor.js | 694 - slickR-0.6.0/slickR/inst/htmlwidgets/lib/jquery-migrate/jquery-migrate-3.1.0.min.js | 4 slickR-0.6.0/slickR/inst/htmlwidgets/lib/jquery/jquery-3.4.1.min.js | 4 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/config.rb | 18 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/fonts/slick.svg | 28 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick-theme.css | 408 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick-theme.less | 336 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick-theme.scss | 388 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick.css | 238 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick.js | 6022 +++++----- slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick.less | 200 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick.min.js | 2 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slick-1.8.1/slick/slick.scss | 200 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slickR/slick-theme.css | 28 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slickR/slick.css | 30 slickR-0.6.0/slickR/inst/htmlwidgets/lib/slickR/slickR.js | 529 slickR-0.6.0/slickR/inst/htmlwidgets/slickR.yaml | 46 slickR-0.6.0/slickR/man/nba_player_logo.Rd | 62 slickR-0.6.0/slickR/man/nba_team_logo.Rd | 58 slickR-0.6.0/slickR/man/settings.Rd | 440 slickR-0.6.0/slickR/man/slickR-shiny.Rd | 65 slickR-0.6.0/slickR/man/slickR.Rd | 206 slickR-0.6.0/slickR/man/slick_combine.Rd | 98 slickR-0.6.0/slickR/man/slick_div.Rd | 100 slickR-0.6.0/slickR/man/slick_list.Rd | 66 slickR-0.6.0/slickR/tests/README.md | 198 slickR-0.6.0/slickR/tests/assets/create_assets.R | 104 slickR-0.6.0/slickR/tests/assets/img2.svg | 2 slickR-0.6.0/slickR/tests/assets/img2_standalone.xml | 168 slickR-0.6.0/slickR/tests/assets/method_test.xml | 168 slickR-0.6.0/slickR/tests/assets/not_standalone.svg | 168 slickR-0.6.0/slickR/tests/assets/widget.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_bumpname.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_css_height.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_settings.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_shiny_tag.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_stack.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_stacksetting.Rds |binary slickR-0.6.0/slickR/tests/assets/widget_synch.Rds |binary slickR-0.6.0/slickR/tests/testthat.R | 8 slickR-0.6.0/slickR/tests/testthat/test-div.R | 200 slickR-0.6.0/slickR/tests/testthat/test-div_method.R | 102 slickR-0.6.0/slickR/tests/testthat/test-readimage.R | 52 slickR-0.6.0/slickR/tests/testthat/test-widget.R | 208 slickR-0.6.0/slickR/vignettes/basics.Rmd | 366 slickR-0.6.0/slickR/vignettes/doms.Rmd | 210 slickR-0.6.0/slickR/vignettes/iframes.Rmd | 164 slickR-0.6.0/slickR/vignettes/pdfs.Rmd | 100 slickR-0.6.0/slickR/vignettes/plots.Rmd | 198 slickR-0.6.0/slickR/vignettes/shiny.Rmd | 312 slickR-0.6.0/slickR/vignettes/tests_and_coverage.Rmd | 228 93 files changed, 21092 insertions(+), 22316 deletions(-)
Title: Detecting Changes in Autocorrelated and Fluctuating Signals
Description: Detect abrupt changes in time series with local fluctuations as a random walk process and autocorrelated noise as an AR(1) process. See Romano, G., Rigaill, G., Runge, V., Fearnhead, P. (2021) <doi:10.1080/01621459.2021.1909598>.
Author: Gaetano Romano [aut, cre],
Guillem Rigaill [aut],
Vincent Runge [aut],
Paul Fearnhead [aut]
Maintainer: Gaetano Romano <g.romano@lancaster.ac.uk>
Diff between DeCAFS versions 3.3.1 dated 2022-01-05 and 3.3.2 dated 2022-12-21
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ build/partial.rdb |binary src/RcppExports.cpp | 5 +++++ src/algorithms.cpp | 5 +---- src/algorithms.h | 2 +- src/fpopmain.cpp | 6 ++++-- 7 files changed, 23 insertions(+), 19 deletions(-)
Title: Sparse Group Variable Selection for Gene-Environment
Interactions in the Longitudinal Study
Description: Recently, regularized variable selection has emerged as a powerful tool to identify and dissect gene-environment interactions. Nevertheless, in longitudinal studies with high dimensional genetic factors, regularization methods for G×E interactions have not been systematically developed. In this package, we provide the implementation of sparse group variable selection, based on both the quadratic inference function (QIF) and generalized estimating equation (GEE), to accommodate the bi-level selection for longitudinal G×E studies with high dimensional genomic features. Alternative methods conducting only the group or individual level selection have also been included. The core modules of the package have been developed in C++.
Author: Fei Zhou, Yuwen Liu, Xi Lu, Jie Ren, Cen Wu
Maintainer: Fei Zhou <fei.zhou@outlook.com>
Diff between springer versions 0.1.5 dated 2021-09-14 and 0.1.6 dated 2022-12-21
DESCRIPTION | 10 +- MD5 | 13 +-- NEWS.md | 10 ++ R/cv.springer.R | 198 +++++++++++++++++++++++++-------------------------- R/dmcp.R | 74 +++++++++---------- R/springer-package.R | 18 ++-- README.md |only build/partial.rdb |binary 8 files changed, 164 insertions(+), 159 deletions(-)
Title: Tracking Geo Code Change of Regional Granularity in Norway
Description: Regional granularity levels in Norway which are depicted by different codes,
have undergone several changes over the years.
Identifying when codes have changed and how many changes have taken place
can be troublesome. This package will help to identify these changes and when the changes
have taken place. One of the limitation of this package is that it is heavily depending
on the codes available from SSB website <https://data.ssb.no/api/klass/v1/api-guide.html>.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between norgeo versions 2.1.3 dated 2022-12-13 and 2.1.4 dated 2022-12-21
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 3 +++ inst/test-data/cast_2020.rds |binary 4 files changed, 9 insertions(+), 6 deletions(-)
Title: Feature Selection for 'mlr3'
Description: Feature selection package of the 'mlr3' ecosystem. It selects
the optimal feature set for any 'mlr3' learner. The package works with
several optimization algorithms e.g. Random Search, Recursive Feature
Elimination, and Genetic Search. Moreover, it can automatically
optimize learners and estimate the performance of optimized feature
sets with nested resampling.
Author: Marc Becker [aut, cre] ,
Patrick Schratz [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3fselect versions 0.8.1 dated 2022-11-27 and 0.9.0 dated 2022-12-21
mlr3fselect-0.8.1/mlr3fselect/man/figures/logo_navbar.png |only mlr3fselect-0.9.0/mlr3fselect/DESCRIPTION | 35 +++--- mlr3fselect-0.9.0/mlr3fselect/MD5 | 58 +++++----- mlr3fselect-0.9.0/mlr3fselect/NAMESPACE | 5 mlr3fselect-0.9.0/mlr3fselect/NEWS.md | 4 mlr3fselect-0.9.0/mlr3fselect/R/AutoFSelector.R | 7 - mlr3fselect-0.9.0/mlr3fselect/R/CallbackFSelect.R |only mlr3fselect-0.9.0/mlr3fselect/R/ContextEval.R |only mlr3fselect-0.9.0/mlr3fselect/R/FSelectInstanceMultiCrit.R | 8 - mlr3fselect-0.9.0/mlr3fselect/R/FSelectInstanceSingleCrit.R | 10 + mlr3fselect-0.9.0/mlr3fselect/R/FSelector.R | 9 + mlr3fselect-0.9.0/mlr3fselect/R/ObjectiveFSelect.R | 39 ++++-- mlr3fselect-0.9.0/mlr3fselect/R/auto_fselector.R | 15 ++ mlr3fselect-0.9.0/mlr3fselect/R/fselect.R | 6 - mlr3fselect-0.9.0/mlr3fselect/R/mlr_callbacks.R |only mlr3fselect-0.9.0/mlr3fselect/R/reexports.R | 9 + mlr3fselect-0.9.0/mlr3fselect/R/zzz.R | 5 mlr3fselect-0.9.0/mlr3fselect/README.md | 15 ++ mlr3fselect-0.9.0/mlr3fselect/inst/WORDLIST | 5 mlr3fselect-0.9.0/mlr3fselect/man/AutoFSelector.Rd | 6 - mlr3fselect-0.9.0/mlr3fselect/man/CallbackFSelect.Rd |only mlr3fselect-0.9.0/mlr3fselect/man/ContextEval.Rd |only mlr3fselect-0.9.0/mlr3fselect/man/FSelectInstanceMultiCrit.Rd | 8 + mlr3fselect-0.9.0/mlr3fselect/man/FSelectInstanceSingleCrit.Rd | 8 + mlr3fselect-0.9.0/mlr3fselect/man/FSelector.Rd | 9 + mlr3fselect-0.9.0/mlr3fselect/man/ObjectiveFSelect.Rd | 8 + mlr3fselect-0.9.0/mlr3fselect/man/auto_fselector.Rd | 4 mlr3fselect-0.9.0/mlr3fselect/man/callback_fselect.Rd |only mlr3fselect-0.9.0/mlr3fselect/man/figures/logo.png |only mlr3fselect-0.9.0/mlr3fselect/man/fselect.Rd | 6 - mlr3fselect-0.9.0/mlr3fselect/man/fsi.Rd | 2 mlr3fselect-0.9.0/mlr3fselect/man/mlr3fselect-package.Rd | 4 mlr3fselect-0.9.0/mlr3fselect/man/mlr3fselect.backup.Rd |only mlr3fselect-0.9.0/mlr3fselect/man/reexports.Rd | 5 mlr3fselect-0.9.0/mlr3fselect/tests/testthat/test_mlr_callbacks.R |only 35 files changed, 209 insertions(+), 81 deletions(-)
Title: Meta-Analysis of Diagnostic Accuracy Studies with Several
Cutpoints
Description: Provides methods by Steinhauser et al. (2016) <DOI:10.1186/s12874-016-0196-1> for meta-analysis of diagnostic accuracy studies with several cutpoints.
Author: Gerta Ruecker [aut] ,
Susanne Steinhauser [aut],
Srinath Kolampally [aut],
Guido Schwarzer [aut, cre]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between diagmeta versions 0.5-0 dated 2022-04-22 and 0.5-1 dated 2022-12-21
diagmeta-0.5-0/diagmeta/R/ipd2diag.R |only diagmeta-0.5-1/diagmeta/DESCRIPTION | 14 ++-- diagmeta-0.5-1/diagmeta/MD5 | 52 +++++++++--------- diagmeta-0.5-1/diagmeta/NEWS.md | 11 +++ diagmeta-0.5-1/diagmeta/R/IPD2diag.R |only diagmeta-0.5-1/diagmeta/R/as.data.frame.diagmeta.R | 2 diagmeta-0.5-1/diagmeta/R/diagmeta-package.R | 6 +- diagmeta-0.5-1/diagmeta/R/diagmeta.R | 37 ++++++------ diagmeta-0.5-1/diagmeta/R/diagstats.R | 4 - diagmeta-0.5-1/diagmeta/R/meta-aux.R | 2 diagmeta-0.5-1/diagmeta/R/meta-chk.R | 2 diagmeta-0.5-1/diagmeta/R/meta-format.R | 2 diagmeta-0.5-1/diagmeta/R/meta-set.R | 2 diagmeta-0.5-1/diagmeta/R/plot.diagmeta.R | 4 - diagmeta-0.5-1/diagmeta/R/print.diagmeta.R | 2 diagmeta-0.5-1/diagmeta/R/print.diagstats.R | 2 diagmeta-0.5-1/diagmeta/R/print.summary.diagmeta.R | 4 - diagmeta-0.5-1/diagmeta/R/summary.diagmeta.R | 2 diagmeta-0.5-1/diagmeta/man/as.data.frame.diagmeta.Rd | 2 diagmeta-0.5-1/diagmeta/man/diagmeta-package.Rd | 6 +- diagmeta-0.5-1/diagmeta/man/diagmeta.Rd | 10 +-- diagmeta-0.5-1/diagmeta/man/diagstats.Rd | 4 - diagmeta-0.5-1/diagmeta/man/ipd2diag.Rd | 4 - diagmeta-0.5-1/diagmeta/man/plot.diagmeta.Rd | 4 - diagmeta-0.5-1/diagmeta/man/print.diagmeta.Rd | 2 diagmeta-0.5-1/diagmeta/man/print.diagstats.Rd | 2 diagmeta-0.5-1/diagmeta/man/print.summary.diagmeta.Rd | 4 - diagmeta-0.5-1/diagmeta/man/summary.diagmeta.Rd | 2 28 files changed, 101 insertions(+), 87 deletions(-)
Title: 1000 Genomes Project Metadata
Description: Metadata about populations and data about samples from the 1000 Genomes Project, including the 2,504 samples sequenced for the Phase 3 release and the expanded collection of 3,202 samples with 602 additional trios. The data is described in Auton et al. (2015) <doi:10.1038/nature15393> and Byrska-Bishop et al. (2022) <doi:10.1016/j.cell.2022.08.004>, and raw data is available at <http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/>. See Turner (2022) <doi:10.48550/arXiv.2210.00539> for more details.
Author: Stephen Turner [aut, cre]
Maintainer: Stephen Turner <vustephen@gmail.com>
Diff between kgp versions 1.1.0 dated 2022-10-05 and 1.1.1 dated 2022-12-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ R/sysdata.rda |binary 4 files changed, 11 insertions(+), 7 deletions(-)
Title: Random Forests, Linear Trees, and Gradient Boosting for
Inference and Interpretability
Description: Provides fast implementations of Honest Random Forests,
Gradient Boosting, and Linear Random Forests, with an emphasis on inference
and interpretability. Additionally contains methods for variable
importance, out-of-bag prediction, regression monotonicity, and
several methods for missing data imputation. Soren R. Kunzel,
Theo F. Saarinen, Edward W. Liu, Jasjeet S. Sekhon (2019) <arXiv:1906.06463>.
Author: Soeren Kuenzel [aut],
Theo Saarinen [aut, cre],
Simon Walter [aut],
Edward Liu [aut],
Allen Tang [aut],
Jasjeet Sekhon [aut]
Maintainer: Theo Saarinen <theo_s@berkeley.edu>
Diff between Rforestry versions 0.9.0.144 dated 2022-11-30 and 0.9.0.152 dated 2022-12-21
Rforestry-0.9.0.144/Rforestry/man/multilayer-forestry.Rd |only Rforestry-0.9.0.144/Rforestry/man/predict-multilayer-forestry.Rd |only Rforestry-0.9.0.144/Rforestry/src/multilayerForestry.cpp |only Rforestry-0.9.0.144/Rforestry/src/multilayerForestry.h |only Rforestry-0.9.0.144/Rforestry/tests/testthat/test-multilayerForestry.R |only Rforestry-0.9.0.144/Rforestry/tests/testthat/test-saveMultilayer.R |only Rforestry-0.9.0.152/Rforestry/DESCRIPTION | 8 Rforestry-0.9.0.152/Rforestry/MD5 | 57 Rforestry-0.9.0.152/Rforestry/NAMESPACE | 2 Rforestry-0.9.0.152/Rforestry/R/RcppExports.R | 32 Rforestry-0.9.0.152/Rforestry/R/forestry.R | 832 +--------- Rforestry-0.9.0.152/Rforestry/man/forestry.Rd | 7 Rforestry-0.9.0.152/Rforestry/man/relinkCPP.Rd | 2 Rforestry-0.9.0.152/Rforestry/man/training_data_checker-forestry.Rd | 9 Rforestry-0.9.0.152/Rforestry/src/RFNode.cpp | 58 Rforestry-0.9.0.152/Rforestry/src/RFNode.h | 9 Rforestry-0.9.0.152/Rforestry/src/RcppExports.cpp | 172 -- Rforestry-0.9.0.152/Rforestry/src/forestry.cpp | 21 Rforestry-0.9.0.152/Rforestry/src/forestry.h | 8 Rforestry-0.9.0.152/Rforestry/src/forestryTree.cpp | 68 Rforestry-0.9.0.152/Rforestry/src/forestryTree.h | 13 Rforestry-0.9.0.152/Rforestry/src/rcpp_cppBuildInterface.cpp | 788 --------- Rforestry-0.9.0.152/Rforestry/src/sampling.cpp | 270 ++- Rforestry-0.9.0.152/Rforestry/src/sampling.h | 1 Rforestry-0.9.0.152/Rforestry/src/utils.h | 3 Rforestry-0.9.0.152/Rforestry/tests/testthat/test-correctedPredict.R | 6 Rforestry-0.9.0.152/Rforestry/tests/testthat/test-groupSampling.R | 332 ++- Rforestry-0.9.0.152/Rforestry/tests/testthat/test-groups.R | 19 Rforestry-0.9.0.152/Rforestry/tests/testthat/test-naDirection.R |only Rforestry-0.9.0.152/Rforestry/tests/testthat/test-nodesizeStrictAvg.R | 4 Rforestry-0.9.0.152/Rforestry/tests/testthat/test-observationWeights.R | 1 Rforestry-0.9.0.152/Rforestry/tests/testthat/test-splitratioHonesty.R |only Rforestry-0.9.0.152/Rforestry/tests/testthat/test-treeCounts.R |only Rforestry-0.9.0.152/Rforestry/tests/testthat/test-weightMatrixFlag.R | 6 34 files changed, 763 insertions(+), 1965 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.1.1 dated 2022-09-16 and 0.1.2 dated 2022-12-21
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PriceIndices-0.1.2/PriceIndices/MD5 | 387 - PriceIndices-0.1.2/PriceIndices/NAMESPACE | 33 PriceIndices-0.1.2/PriceIndices/NEWS.md | 11 PriceIndices-0.1.2/PriceIndices/R/PriceIndices.R | 58 PriceIndices-0.1.2/PriceIndices/R/f_Machine_Learning.R | 2 PriceIndices-0.1.2/PriceIndices/R/f_bilateral_indices.R | 595 ++ PriceIndices-0.1.2/PriceIndices/R/f_chain_indices.R | 213 PriceIndices-0.1.2/PriceIndices/R/f_comparing_indices.R | 140 PriceIndices-0.1.2/PriceIndices/R/f_data_processing.R | 391 - PriceIndices-0.1.2/PriceIndices/R/f_extensions_multilateral_indices.R | 1209 ++++ PriceIndices-0.1.2/PriceIndices/R/f_full_multilateral_indices.R | 957 +++ PriceIndices-0.1.2/PriceIndices/R/f_general.R | 2430 +--------- PriceIndices-0.1.2/PriceIndices/R/f_internal.R | 1457 +++++ PriceIndices-0.1.2/PriceIndices/README.md | 672 +- PriceIndices-0.1.2/PriceIndices/data/dataCOICOP.rda |binary PriceIndices-0.1.2/PriceIndices/inst/doc/PriceIndices.R | 113 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PriceIndices-0.1.2/PriceIndices/man/geksw_splice.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/generate.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/generate_CES.Rd |only PriceIndices-0.1.2/PriceIndices/man/geohybrid.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/geolaspeyres.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/geolowe.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/geopaasche.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/geoyoung.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/gk.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/gk_fbew.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/gk_fbmw.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/gk_splice.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/harmonic.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/hybrid.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/jevons.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/laspeyres.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/lehr.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/lloyd_moulton.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/lowe.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/marshall_edgeworth.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/paasche.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/palgrave.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/price_indices.Rd | 77 PriceIndices-0.1.2/PriceIndices/man/prices.Rd | 8 PriceIndices-0.1.2/PriceIndices/man/quantities.Rd | 8 PriceIndices-0.1.2/PriceIndices/man/sato_vartia.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/stuvel.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/tornqvist.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/tpd.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/tpd_fbew.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/tpd_fbmw.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/tpd_splice.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/unit_value_index.Rd |only PriceIndices-0.1.2/PriceIndices/man/utpd.Rd |only PriceIndices-0.1.2/PriceIndices/man/utpd_fbew.Rd |only PriceIndices-0.1.2/PriceIndices/man/utpd_fbmw.Rd |only PriceIndices-0.1.2/PriceIndices/man/utpd_splice.Rd |only PriceIndices-0.1.2/PriceIndices/man/value_index.Rd |only PriceIndices-0.1.2/PriceIndices/man/vartia.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/walsh.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeks.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeks_fbew.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeks_fbmw.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeks_splice.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksaqi.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksaqi_fbew.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksaqi_fbmw.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksaqi_splice.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksaqu.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksaqu_fbew.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksaqu_fbmw.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksaqu_splice.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksgaqi.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksgaqi_fbew.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksgaqi_fbmw.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksgaqi_splice.Rd | 2 PriceIndices-0.1.2/PriceIndices/man/wgeksgl.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksgl_fbew.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/wgeksgl_fbmw.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/wgeksgl_splice.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/wgeksl.Rd | 4 PriceIndices-0.1.2/PriceIndices/man/wgeksl_fbew.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/wgeksl_fbmw.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/wgeksl_splice.Rd | 6 PriceIndices-0.1.2/PriceIndices/man/young.Rd | 2 PriceIndices-0.1.2/PriceIndices/vignettes/PriceIndices.Rmd | 241 217 files changed, 6149 insertions(+), 3913 deletions(-)
Title: Computes the Variance-Covariance Matrix of Multidimensional
Parameters Using M-Estimation
Description: Provides a flexible framework for estimating the variance-covariance matrix of estimated parameters. Estimation relies on unbiased estimating functions to compute the empirical sandwich variance. (i.e., M-estimation in the vein of Tsiatis et al. (2019) <doi:10.1201/9780429192692>.
Author: Francois Grolleau
Maintainer: Francois Grolleau <francois.grolleau@aphp.fr>
Diff between Mestim versions 0.2.0 dated 2022-12-18 and 0.2.1 dated 2022-12-21
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ build/vignette.rds |binary inst/doc/intro-vignette.Rmd | 19 +++++++++---------- inst/doc/intro-vignette.html | 19 +++++++++---------- vignettes/intro-vignette.Rmd | 19 +++++++++---------- 7 files changed, 41 insertions(+), 39 deletions(-)
Title: Multivariate Difference Between Two Groups
Description: Estimation of multivariate differences between two groups (e.g., multivariate sex differences) with regularized regression methods and predictive approach. See Lönnqvist & Ilmarinen (2021) <doi:10.1007/s11109-021-09681-2> and Ilmarinen et al. (2022) <doi:10.1177/08902070221088155>.
Includes tools that help in understanding difference score reliability, predictions of difference score variables, conditional intra-class correlations, and heterogeneity of variance estimates. Package development was supported by the Academy of Finland research grant 338891.
Author: Ville-Juhani Ilmarinen [aut, cre]
Maintainer: Ville-Juhani Ilmarinen <vj.ilmarinen@gmail.com>
Diff between multid versions 0.7.0 dated 2022-08-18 and 0.7.1 dated 2022-12-21
DESCRIPTION | 6 MD5 | 20 - NEWS.md | 9 R/ml_dadas.R | 157 +++++++++++--- R/qcc.R | 6 R/sem_dadas.R | 55 ++++ README.md | 103 +++++---- build/vignette.rds |binary inst/doc/multivariate_sex_differences_in_personality.html | 155 ++++++------- man/ml_dadas.Rd | 17 - man/sem_dadas.Rd | 8 11 files changed, 352 insertions(+), 184 deletions(-)
Title: Statistical Methods for Sensitivity Analysis in Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis and to support Schwarzer et al. (2015) <DOI:10.1007/978-3-319-21416-0>, Chapter 5 'Small-Study Effects in Meta-Analysis':
- Copas selection model described in Copas & Shi (2001) <DOI:10.1177/096228020101000402>;
- limit meta-analysis by Rücker et al. (2011) <DOI:10.1093/biostatistics/kxq046>;
- upper bound for outcome reporting bias by Copas & Jackson (2004) <DOI:10.1111/j.0006-341X.2004.00161.x>;
- imputation methods for missing binary data by Gamble & Hollis (2005) <DOI:10.1016/j.jclinepi.2004.09.013> and Higgins et al. (2008) <DOI:10.1177/1740774508091600>;
- LFK index test and Doi plot by Furuya-Kanamori et al. (2018) <DOI:10.1097/XEB.0000000000000141>.
Author: Guido Schwarzer [cre, aut] ,
James R. Carpenter [aut] ,
Gerta Ruecker [aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between metasens versions 1.5-0 dated 2022-07-11 and 1.5-1 dated 2022-12-21
DESCRIPTION | 14 +++---- MD5 | 82 ++++++++++++++++++++--------------------- NEWS.md | 13 ++++++ R/copas.R | 2 - R/doiplot.R | 4 +- R/forest.orbbound.R | 3 - R/funnel.limitmeta.R | 4 +- R/lfkindex.R | 4 +- R/limitmeta.R | 4 +- R/meta-aux.R | 2 - R/meta-chk.R | 2 - R/meta-format.R | 2 - R/meta-set.R | 2 - R/meta-transf.R | 2 - R/metamiss.R | 4 +- R/metasens-package.R | 4 +- R/orbbound.R | 10 ++--- R/plot.copas.R | 2 - R/print.copas.R | 2 - R/print.limitmeta.R | 2 - R/print.orbbound.R | 2 - R/print.summary.copas.R | 2 - R/print.summary.limitmeta.R | 2 - R/summary.copas.R | 2 - R/summary.limitmeta.R | 2 - man/copas.Rd | 2 - man/doiplot.Rd | 4 +- man/forest.orbbound.Rd | 2 - man/funnel.limitmeta.Rd | 4 +- man/lfkindex.Rd | 4 +- man/limitmeta.Rd | 4 +- man/metamiss.Rd | 2 - man/metasens-package.Rd | 4 +- man/orbbound.Rd | 2 - man/plot.copas.Rd | 2 - man/print.copas.Rd | 2 - man/print.limitmeta.Rd | 2 - man/print.orbbound.Rd | 2 - man/print.summary.copas.Rd | 2 - man/print.summary.limitmeta.Rd | 2 - man/summary.copas.Rd | 2 - man/summary.limitmeta.Rd | 2 - 42 files changed, 114 insertions(+), 104 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 6.0-0 dated 2022-09-17 and 6.1-0 dated 2022-12-21
DESCRIPTION | 16 - MD5 | 224 +++++++-------- NAMESPACE | 1 NEWS.md | 124 ++++++++ R/JAMAlabels.R | 2 R/as.data.frame.meta.R | 6 R/baujat.R | 2 R/bubble.R | 2 R/catmeth.R | 82 ++++- R/ci.R | 11 R/drapery.R | 4 R/forest.R | 628 ++++++++++++++++++++++++++++++------------- R/forest.metabind.R | 22 + R/funnel.R | 2 R/gs.R | 2 R/labbe.R | 34 +- R/labels.meta.R | 2 R/longarm.R | 2 R/mean-sd-internal.R | 236 +++++++++++++++- R/meta-aux.R | 427 +++++++++++++++++++++++++++++ R/meta-chk.R | 66 ++++ R/meta-format.R | 7 R/meta-het.R | 16 - R/meta-internal.R | 18 - R/meta-object.R | 7 R/meta-package.R | 106 ++++--- R/meta-set.R | 2 R/meta-sm.R |only R/meta-transf.R | 204 ++++---------- R/meta-xlab.R | 6 R/metabias.R | 8 R/metabias.rm5.R | 2 R/metabin.R | 435 +++++++----------------------- R/metabind.R | 50 --- R/metacont.R | 90 ++++-- R/metacor.R | 50 +-- R/metacr.R | 2 R/metacum.R | 2 R/metagen.R | 399 +++++++++++++++------------ R/metainc.R | 409 ++++++---------------------- R/metainf.R | 2 R/metamean.R | 117 +++++--- R/metamerge.R | 10 R/metaprop.R | 387 ++++++--------------------- R/metarate.R | 391 ++++++--------------------- R/metareg.R | 2 R/nnt.R | 243 ++++++++++++---- R/or2smd.R | 2 R/print.meta.R | 144 +++++----- R/print.rm5.R | 2 R/print.summary.meta.R | 27 + R/radial.R | 2 R/read.mtv.R | 2 R/read.rm5-internal.R | 4 R/read.rm5.R | 2 R/se-internal.R | 8 R/settings.meta-internal.R | 11 R/settings.meta.R | 86 ++++-- R/smd2or.R | 2 R/subgroup.R | 645 +++++++++++++++++++++------------------------ R/subset.longarm.R | 2 R/summary.meta.R | 8 R/summary.rm5.R | 2 R/trimfill.R | 20 - R/update.meta.R | 97 ++++++ R/weights.meta.R | 2 man/JAMAlabels.Rd | 2 man/as.data.frame.meta.Rd | 2 man/baujat.meta.Rd | 2 man/bubble.metareg.Rd | 2 man/ci.Rd | 2 man/drapery.Rd | 4 man/forest.meta.Rd | 14 man/forest.metabind.Rd | 2 man/funnel.meta.Rd | 2 man/gs.Rd | 2 man/labbe.Rd | 2 man/labels.meta.Rd | 2 man/longarm.Rd | 2 man/meta-object.Rd | 7 man/meta-package.Rd | 103 ++++--- man/meta-sm.Rd |only man/metabias.Rd | 2 man/metabias.rm5.Rd | 2 man/metabin.Rd | 19 - man/metabind.Rd | 2 man/metacont.Rd | 38 ++ man/metacor.Rd | 4 man/metacr.Rd | 2 man/metacum.Rd | 2 man/metagen.Rd | 61 +++- man/metainc.Rd | 25 + man/metainf.Rd | 2 man/metamean.Rd | 60 +++- man/metamerge.Rd | 2 man/metaprop.Rd | 11 man/metarate.Rd | 7 man/metareg.Rd | 2 man/nnt.Rd | 124 +++++++- man/or2smd.Rd | 2 man/print.meta.Rd | 4 man/print.rm5.Rd | 2 man/print.summary.meta.Rd | 6 man/radial.Rd | 2 man/read.mtv.Rd | 2 man/read.rm5.Rd | 2 man/settings.meta.Rd | 8 man/smd2or.Rd | 2 man/subset.longarm.Rd | 2 man/summary.meta.Rd | 2 man/summary.rm5.Rd | 2 man/trimfill.Rd | 2 man/update.meta.Rd | 2 man/weights.meta.Rd | 2 114 files changed, 3634 insertions(+), 2851 deletions(-)
Title: Tidy Verbs for Fast Data Manipulation
Description: A toolkit of tidy data manipulation verbs with 'data.table' as the backend.
Combining the merits of syntax elegance from 'dplyr' and computing performance from 'data.table',
'tidyfst' intends to provide users with state-of-the-art data manipulation tools with least pain.
This package is an extension of 'data.table'. While enjoying a tidy syntax,
it also wraps combinations of efficient functions to facilitate frequently-used data operations.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between tidyfst versions 1.7.5 dated 2022-10-27 and 1.7.6 dated 2022-12-21
DESCRIPTION | 10 +-- MD5 | 37 ++++++----- NAMESPACE | 1 R/global_setting.R | 3 R/notin.R | 2 build/vignette.rds |binary inst/doc/benchmark.html | 68 +++++++++++---------- inst/doc/chinese_tutorial.html | 59 ++++++++++--------- inst/doc/english_tutorial.html | 13 +++- inst/doc/example1_intro.html | 13 +++- inst/doc/example2_join.html | 13 +++- inst/doc/example3_reshape.html | 127 +++++++++++++++++++++-------------------- inst/doc/example4_nest.html | 13 +++- inst/doc/example5_fst.html | 13 +++- inst/doc/example6_dt.html | 13 +++- man/figures/tidyfst_logo.png |only man/grapes-notin-grapes.Rd | 2 man/pairwise.Rd | 1 man/reexports.Rd | 5 - man/unite_dt.Rd | 2 20 files changed, 231 insertions(+), 164 deletions(-)
Title: R Graphics Devices for 'Office' Vector Graphics Output
Description: Vector Graphics devices for 'Microsoft PowerPoint' and
'Microsoft Excel'. Functions extending package 'officer' are provided to
embed 'DrawingML' graphics into 'Microsoft PowerPoint' presentations and
'Microsoft Excel' workbooks.
Author: David Gohel [aut, cre],
Bob Rudis [ctb] ,
Francois Brunetti [ctb]
Maintainer: David Gohel <david.gohel@ardata.fr>
Diff between rvg versions 0.3.0 dated 2022-12-08 and 0.3.1 dated 2022-12-21
DESCRIPTION | 11 ++++++----- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/ph_with_vg.R | 20 +++++++------------- src/raster.cpp | 4 ++-- 5 files changed, 26 insertions(+), 24 deletions(-)
Title: Bayesian Inference for Directed Acyclic Graphs
Description: Implementation of a collection of MCMC methods for Bayesian structure learning
of directed acyclic graphs (DAGs), both from continuous and discrete data. For efficient
inference on larger DAGs, the space of DAGs is pruned according to the data. To filter
the search space, the algorithm employs a hybrid approach, combining constraint-based
learning with search and score. A reduced search space is initially defined on the basis
of a skeleton obtained by means of the PC-algorithm, and then iteratively improved with
search and score. Search and score is then performed following two approaches:
Order MCMC, or Partition MCMC.
The BGe score is implemented for continuous data and the BDe score is implemented
for binary data or categorical data. The algorithms may provide the maximum a posteriori
(MAP) graph or a sample (a collection of DAGs) from the posterior distribution given the data.
All algorithms are also applicable for structure learning and sampling for dynamic Bayesian networks.
Refe [...truncated...]
Author: Polina Suter [aut, cre], Jack Kuipers [aut]
Maintainer: Polina Suter <polina.suter@gmail.com>
Diff between BiDAG versions 2.1.1 dated 2022-08-05 and 2.1.2 dated 2022-12-21
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NAMESPACE | 1 + R/extractors.R | 21 +++++++++++++++++++++ R/plotusingrgraphviz.R | 34 +++++++++++++++++++++++++++++++++- man/getRuntime.Rd |only man/plot2in1.Rd | 6 +++++- 7 files changed, 69 insertions(+), 10 deletions(-)
Title: Interface to 'Kusto'/'Azure Data Explorer'
Description: An interface to 'Azure Data Explorer', also known as 'Kusto', a fast, highly scalable data exploration service from Microsoft: <https://azure.microsoft.com/en-us/products/data-explorer/>. Includes 'DBI' and 'dplyr' interfaces, with the latter modelled after the 'dbplyr' package, whereby queries are translated from R into the native 'KQL' query language and executed lazily. On the admin side, the package extends the object framework provided by 'AzureRMR' to support creation and deletion of databases, and management of database principals. Part of the 'AzureR' family of packages.
Author: Hong Ooi [aut],
Alex Kyllo [aut, cre],
dbplyr development team [cph] ,
Microsoft [cph]
Maintainer: Alex Kyllo <jekyllo@microsoft.com>
Diff between AzureKusto versions 1.0.7 dated 2022-08-26 and 1.1.0 dated 2022-12-21
DESCRIPTION | 8 MD5 | 50 ++-- NAMESPACE | 5 NEWS.md | 14 + R/add_methods.R | 6 R/az_database.R | 2 R/az_kusto.R | 2 R/endpoint.R | 11 R/kql-build.R | 7 R/kusto_token.R | 5 R/tbl.R | 106 ++++++++ R/translate-kql.R | 1 README.md | 108 ++++++++ build/vignette.rds |binary inst/doc/AzureKusto.R | 96 ++++++- inst/doc/AzureKusto.Rmd | 162 ++++++++++--- inst/doc/AzureKusto.html | 483 +++++++++++++++++++++++++++++++--------- man/az_kusto.Rd | 2 man/az_kusto_database.Rd | 2 man/base_scalar.Rd | 2 man/create_kusto_cluster.Rd | 2 man/delete_kusto_cluster.Rd | 2 man/export.Rd |only man/get_kusto_cluster.Rd | 2 man/kusto_export_cmd.Rd |only tests/testthat/test_translate.r | 72 +++++ vignettes/AzureKusto.Rmd | 162 ++++++++++--- 27 files changed, 1045 insertions(+), 267 deletions(-)