Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-10-28 0.2.0
2019-07-09 0.1.6
2019-04-21 0.1.5
2019-02-24 0.1.4
2019-01-16 0.1.3
2018-12-30 0.1.2
Title: Time Value of Money Functions
Description: Functions for managing cashflows and interest rate curves.
Author: Juan Manuel Truppia
Maintainer: Juan Manuel Truppia <jmtruppia@gmail.com>
Diff between tvm versions 0.5.0 dated 2021-04-21 and 0.5.1 dated 2023-01-08
DESCRIPTION | 8 - MD5 | 10 - R/CfFuncs.R | 2 build/vignette.rds |binary inst/doc/intro.html | 393 ++++++++++++++++++++++++++++++++++++++++------------ man/xirr.Rd | 2 6 files changed, 319 insertions(+), 96 deletions(-)
Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database
with a treasure of aquatic and terrestrial ecotoxicological data.
As the online search interface doesn't come with an API, this
package provides the means to easily access and search the database
in R. To this end, all raw tables are downloaded from the EPA website
and stored in a local SQLite database.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between ECOTOXr versions 0.2.0 dated 2022-11-17 and 1.0.1 dated 2023-01-08
ECOTOXr-0.2.0/ECOTOXr/NEWS |only ECOTOXr-1.0.1/ECOTOXr/DESCRIPTION | 18 ECOTOXr-1.0.1/ECOTOXr/MD5 | 60 ++- ECOTOXr-1.0.1/ECOTOXr/NAMESPACE | 94 ++--- ECOTOXr-1.0.1/ECOTOXr/NEWS.md |only ECOTOXr-1.0.1/ECOTOXr/R/ECOTOXr.r | 124 ++---- ECOTOXr-1.0.1/ECOTOXr/R/cas_handlers.r | 34 - ECOTOXr-1.0.1/ECOTOXr/R/database_access.r | 77 ++-- ECOTOXr-1.0.1/ECOTOXr/R/imports.r | 5 ECOTOXr-1.0.1/ECOTOXr/R/init.r | 111 +++-- ECOTOXr-1.0.1/ECOTOXr/R/online.r |only ECOTOXr-1.0.1/ECOTOXr/R/wrappers.r | 57 +-- ECOTOXr-1.0.1/ECOTOXr/README.md |only ECOTOXr-1.0.1/ECOTOXr/build |only ECOTOXr-1.0.1/ECOTOXr/man/ECOTOXr.Rd | 85 +--- ECOTOXr-1.0.1/ECOTOXr/man/build_ecotox_sqlite.Rd | 8 ECOTOXr-1.0.1/ECOTOXr/man/cas.Rd | 316 ++++++++--------- ECOTOXr-1.0.1/ECOTOXr/man/check_ecotox_availability.Rd | 5 ECOTOXr-1.0.1/ECOTOXr/man/cite_ecotox.Rd | 14 ECOTOXr-1.0.1/ECOTOXr/man/dbConnectEcotox.Rd | 13 ECOTOXr-1.0.1/ECOTOXr/man/download_ecotox_data.Rd | 19 - ECOTOXr-1.0.1/ECOTOXr/man/figures |only ECOTOXr-1.0.1/ECOTOXr/man/get_ecotox_info.Rd | 8 ECOTOXr-1.0.1/ECOTOXr/man/get_ecotox_url.Rd | 66 +-- ECOTOXr-1.0.1/ECOTOXr/man/get_path.Rd | 7 ECOTOXr-1.0.1/ECOTOXr/man/list_ecotox_fields.Rd | 10 ECOTOXr-1.0.1/ECOTOXr/man/reexports.Rd | 26 - ECOTOXr-1.0.1/ECOTOXr/man/search_ecotox.Rd | 31 - ECOTOXr-1.0.1/ECOTOXr/man/websearch.Rd |only ECOTOXr-1.0.1/ECOTOXr/man/websearch_comptox.Rd |only ECOTOXr-1.0.1/ECOTOXr/tests/testthat/test_dev.r |only 31 files changed, 590 insertions(+), 598 deletions(-)
Title: Unnest Hierarchical Data Structures
Description: Fast flattening of hierarchical data structures (e.g. JSON, XML)
into data.frames with a flexible spec language.
Author: Vitalie Spinu [aut, cre]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>
Diff between unnest versions 0.0.3 dated 2021-09-23 and 0.0.4 dated 2023-01-08
DESCRIPTION | 6 MD5 | 22 - NEWS.md | 5 build/vignette.rds |binary inst/doc/tidyr.html | 953 ++++++++++++++++++++++++++++++++------------------- src/Node.h | 34 - src/Spec.cpp | 16 src/Spec.h | 28 - src/VarAccumulator.h | 2 src/common.h | 8 src/unnest.cpp | 60 +-- src/unnest.h | 118 +++--- 12 files changed, 748 insertions(+), 504 deletions(-)
Title: Implementing Methods for Spatial Fuzzy Unsupervised
Classification
Description: Provides functions to apply spatial fuzzy unsupervised classification, visualize and interpret results. This method is well suited when the user wants to analyze data with a fuzzy clustering algorithm and to account for the spatial dimension of the dataset. In addition, indexes for estimating the spatial consistency and classification quality are proposed.
The methods were originally proposed in the field of brain imagery (seed Cai and al. 2007 <doi:10.1016/j.patcog.2006.07.011> and Zaho and al. 2013 <doi:10.1016/j.dsp.2012.09.016>) and recently applied in geography (see Gelb and Apparicio <doi:10.4000/cybergeo.36414>).
Author: Jeremy Gelb [aut, cre],
Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>
Diff between geocmeans versions 0.3.1 dated 2022-10-15 and 0.3.2 dated 2023-01-08
geocmeans-0.3.1/geocmeans/data/Arcachon.rda |only geocmeans-0.3.2/geocmeans/DESCRIPTION | 20 - geocmeans-0.3.2/geocmeans/MD5 | 134 ++++--- geocmeans-0.3.2/geocmeans/NAMESPACE | 6 geocmeans-0.3.2/geocmeans/NEWS.md | 9 geocmeans-0.3.2/geocmeans/R/FCM.R | 17 - geocmeans-0.3.2/geocmeans/R/FCMclass.R | 117 +++++- geocmeans-0.3.2/geocmeans/R/GFCM.R | 15 geocmeans-0.3.2/geocmeans/R/RcppExports.R | 143 +++++++- geocmeans-0.3.2/geocmeans/R/assembling.R | 75 ++++ geocmeans-0.3.2/geocmeans/R/boostrap_clust_validation.R | 8 geocmeans-0.3.2/geocmeans/R/data_doc.R | 30 + geocmeans-0.3.2/geocmeans/R/geocmeans.R | 1 geocmeans-0.3.2/geocmeans/R/raster_support.R | 69 +--- geocmeans-0.3.2/geocmeans/R/scaling.R |only geocmeans-0.3.2/geocmeans/R/shinyapp.R | 16 geocmeans-0.3.2/geocmeans/R/side_functions.R | 88 +++-- geocmeans-0.3.2/geocmeans/R/spatial_indices.R | 84 ++-- geocmeans-0.3.2/geocmeans/README.md | 10 geocmeans-0.3.2/geocmeans/build/partial.rdb |binary geocmeans-0.3.2/geocmeans/data/LyonIris.rda |binary geocmeans-0.3.2/geocmeans/inst/doc/FCMres.R | 13 geocmeans-0.3.2/geocmeans/inst/doc/FCMres.Rmd | 13 geocmeans-0.3.2/geocmeans/inst/doc/FCMres.html | 39 +- geocmeans-0.3.2/geocmeans/inst/doc/introduction.html | 10 geocmeans-0.3.2/geocmeans/inst/doc/rasters.R | 65 ++- geocmeans-0.3.2/geocmeans/inst/doc/rasters.Rmd | 77 ++-- geocmeans-0.3.2/geocmeans/inst/doc/rasters.html | 134 ++++--- geocmeans-0.3.2/geocmeans/inst/extdata/Littoral4_2154.tif |only geocmeans-0.3.2/geocmeans/inst/extdata/results_vignette_intro.rda |binary geocmeans-0.3.2/geocmeans/inst/extdata/results_vignette_raster.rda |binary geocmeans-0.3.2/geocmeans/man/Arcachon.Rd | 19 - geocmeans-0.3.2/geocmeans/man/CMeans.Rd | 9 geocmeans-0.3.2/geocmeans/man/GCMeans.Rd | 9 geocmeans-0.3.2/geocmeans/man/SFCMeans.Rd | 9 geocmeans-0.3.2/geocmeans/man/SGFCMeans.Rd | 9 geocmeans-0.3.2/geocmeans/man/adj_spconsist_arr_window_globstd.Rd | 7 geocmeans-0.3.2/geocmeans/man/barPlots.Rd | 2 geocmeans-0.3.2/geocmeans/man/calcBelongMatrix.Rd | 5 geocmeans-0.3.2/geocmeans/man/calcBelongMatrixNoisy.Rd |only geocmeans-0.3.2/geocmeans/man/calcFGCMBelongMatrix.Rd | 5 geocmeans-0.3.2/geocmeans/man/calcFGCMBelongMatrixNoisy.Rd |only geocmeans-0.3.2/geocmeans/man/calcFuzzyElsa_raster.Rd | 2 geocmeans-0.3.2/geocmeans/man/calcRobustSigmas.Rd |only geocmeans-0.3.2/geocmeans/man/calcSFCMBelongMatrix.Rd | 7 geocmeans-0.3.2/geocmeans/man/calcSFCMBelongMatrixNoisy.Rd |only geocmeans-0.3.2/geocmeans/man/calcSFGCMBelongMatrix.Rd | 7 geocmeans-0.3.2/geocmeans/man/calcSFGCMBelongMatrixNoisy.Rd |only geocmeans-0.3.2/geocmeans/man/calc_local_moran_raster.Rd | 7 geocmeans-0.3.2/geocmeans/man/calc_moran_raster.Rd | 5 geocmeans-0.3.2/geocmeans/man/calc_raster_spinconsistency.Rd | 13 geocmeans-0.3.2/geocmeans/man/eval_parameters.Rd | 7 geocmeans-0.3.2/geocmeans/man/geocmeans.Rd | 1 geocmeans-0.3.2/geocmeans/man/mapThis.Rd | 70 ++-- geocmeans-0.3.2/geocmeans/man/select_parameters.Rd | 12 geocmeans-0.3.2/geocmeans/man/select_parameters.mc.Rd | 12 geocmeans-0.3.2/geocmeans/man/spConsistency.Rd | 16 geocmeans-0.3.2/geocmeans/man/standardizer.Rd |only geocmeans-0.3.2/geocmeans/src/FCM_functions.cpp | 141 +++++++- geocmeans-0.3.2/geocmeans/src/GFCM_functions.cpp | 148 ++++++++ geocmeans-0.3.2/geocmeans/src/RcppExports.cpp | 134 ++++++- geocmeans-0.3.2/geocmeans/src/moran_for_rasters.cpp | 71 +--- geocmeans-0.3.2/geocmeans/src/shared_functions.cpp | 37 ++ geocmeans-0.3.2/geocmeans/src/shared_functions.h | 4 geocmeans-0.3.2/geocmeans/tests/testthat/test_FCMresclass.R | 13 geocmeans-0.3.2/geocmeans/tests/testthat/test_basic_functions.R | 6 geocmeans-0.3.2/geocmeans/tests/testthat/test_raster_functions.R |only geocmeans-0.3.2/geocmeans/tests/testthat/test_robust_fcm.R |only geocmeans-0.3.2/geocmeans/tests/testthat/test_spatial_functions.R | 170 ++++++++-- geocmeans-0.3.2/geocmeans/vignettes/FCMres.Rmd | 13 geocmeans-0.3.2/geocmeans/vignettes/geocmeans_references.bibtex | 22 + geocmeans-0.3.2/geocmeans/vignettes/rasters.Rmd | 77 ++-- geocmeans-0.3.2/geocmeans/vignettes/web_vignettes |only 73 files changed, 1651 insertions(+), 611 deletions(-)
Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions).
The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include:
a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis.
b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534.
c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444.
d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Stat [...truncated...]
Author: Michail Tsagris [aut, cre],
Giorgos Athineou [aut],
Abdulaziz Alenazi [ctb],
Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between Compositional versions 6.0 dated 2022-11-11 and 6.1 dated 2023-01-08
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/alfa.pcr.R | 2 +- R/kl.compreg2.R | 4 ++-- R/pcr.tune.R | 11 +++++++---- man/Compositional-package.Rd | 4 ++-- man/alfa.pcr.Rd | 4 ++-- man/glm.pcr.Rd | 16 ++++++++-------- 8 files changed, 33 insertions(+), 30 deletions(-)
Title: Wrapper for 'RcppSpdlog' Functions
Description: Logging functions in 'RcppSpdlog' provide access to the logging
functionality from the 'spdlog' 'C++' library. This package offers shorter convenience
wrappers for the 'R' functions which match the 'C++' functions, namely via, say,
'spdl::debug()' at the debug level. The actual formatting is done by the
'fmt::format()' function from the 'fmtlib' library (that is also 'std::format()'
in 'C++20' or later).
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between spdl versions 0.0.3 dated 2022-12-14 and 0.0.4 dated 2023-01-08
ChangeLog | 17 +++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/init.R | 7 ++++--- R/wrap.R | 9 ++++++++- inst/NEWS.Rd | 12 +++++++++--- man/setup.Rd | 8 ++++++++ 7 files changed, 56 insertions(+), 17 deletions(-)
Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications.
Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph],
Fanny Meyer [aut],
David Granjon [aut],
Ian Fellows [ctb] ,
Wil Davis [ctb] ,
Spencer Matthews [ctb] ,
JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between shinyWidgets versions 0.7.5 dated 2022-11-17 and 0.7.6 dated 2023-01-08
DESCRIPTION | 6 MD5 | 72 NAMESPACE | 1 NEWS.md | 13 R/bootstrap-utils.R | 264 +- R/drop-menu.R | 20 R/input-airDatepicker.R | 5 R/input-awesomeradio.R | 512 ++-- R/input-checkboxgroupbuttons.R | 504 ++-- R/input-knob.R | 438 +-- R/input-numericRange.R | 280 +- R/input-pretty.R | 1472 ++++++------- R/input-radiogroupbuttons.R | 540 ++-- R/input-spectrum.R | 344 +-- R/input-switch.R | 682 +++--- R/progressBars.R | 400 +-- R/vertical-tab.R | 2 R/virtual-select.R | 524 ++-- README.md | 2 inst/assets/buttons-group/checkboxGroupButtons-bindings.js | 340 +-- inst/assets/buttons-group/checkboxGroupButtons.css | 114 - inst/assets/buttons-group/radioGroupButtons-bindings.js | 290 +- inst/assets/buttons-group/radioGroupButtons.css | 116 - inst/assets/input-icon/numeric-icon-bindings.js | 286 +- inst/assets/input-icon/text-icon-bindings.js | 150 - inst/assets/numericRange/js/numericRange-bindings.js | 124 - inst/assets/shinyWidgets.min.css | 2 inst/assets/sweetalert2/sweetalert-bindings.js | 232 +- inst/assets/utils.js | 32 inst/examples/checkboxGroupButtons/server.R | 98 inst/examples/radioGroupButtons/server.R | 98 inst/packer/air-datepicker.js | 2 inst/packer/virtual-select.js | 2 inst/packer/virtual-select.js.LICENSE.txt | 2 man/vertical-tab.Rd | 1 tests/testthat/test-updateCheckboxGroupButtons.R | 90 tests/testthat/test-updateRadioGroupButtons.R | 90 37 files changed, 4085 insertions(+), 4065 deletions(-)
Title: Parallel Partitioning-Around-Medoids (PAM) for Big Sets of Data
Description: Application of the Partitioning-Around-Medoids (PAM) clustering algorithm described in Schubert, E. and Rousseeuw, P.J.:
"Fast and eager k-medoids clustering: O(k) runtime improvement of the PAM, CLARA, and CLARANS algorithms." Information Systems,
vol. 101, p. 101804, (2021). <doi:10.1016/j.is.2021.101804>.
It uses a binary format for storing and retrieval of matrices developed for the 'jmatrix' package but the functionality of 'jmatrix'
is included here, so you do not need to install it. Also, it is used by package 'scellpam', so if you have installed it, you do not need
to install this package.
PAM can be applied to sets of data whose dissimilarity matrix can be very big. It has been tested with up to 100.000 points.
It does this with the help of the code developed for other package, 'jmatrix', which allows the matrix not to be loaded in 'R' memory (which
would force it to be of double type) but it gets from disk, which allows using float (or even smaller data types). Moreover [...truncated...]
Author: Juan Domingo [aut, cre] ,
Guillermo Ayala [ctb] ,
Spanish Ministry of Science and Innovation, MCIN/AEI
<doi:10.13039/501100011033> [fnd]
Maintainer: Juan Domingo <Juan.Domingo@uv.es>
Diff between parallelpam versions 1.0 dated 2022-11-24 and 1.0.1 dated 2023-01-08
DESCRIPTION | 8 +- MD5 | 6 - inst/doc/jmatrixpp.html | 138 ++++++++++++++++++++++--------------------- inst/doc/parallelpam.html | 145 ++++++++++++++++++++++------------------------ 4 files changed, 149 insertions(+), 148 deletions(-)
Title: Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Description: A toolkit for Commodities 'analytics', risk management and
trading professionals. Includes functions for API calls to
'Morningstar Commodities' and 'Genscape'.
Author: Philippe Cote [aut, cre],
Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>
Diff between RTL versions 1.3.1 dated 2022-11-15 and 1.3.2 dated 2023-01-08
DESCRIPTION | 18 ++++++------ MD5 | 62 ++++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 19 +++++++++++++ R/chart_eia_sd.R | 8 ----- R/data.R | 6 ++-- R/eia2tidy.R | 2 - R/getBoC.R |only R/tradeStats.R | 1 data/crudeOil.rda |binary data/cushing.rda |binary data/dflong.rda |binary data/dfwide.rda |binary data/eiaStocks.rda |binary data/eurodollar.rda |binary data/expiry_table.rda |binary data/fizdiffs.rda |binary data/fxfwd.rda |binary data/holidaysOil.rda |binary data/spot2futConvergence.rda |binary data/steo.rda |binary data/stocks.rda |binary data/tradeCycle.rda |binary data/tradeHubs.rda |binary data/tsQuotes.rda |binary data/usSwapCurves.rda |binary data/usSwapCurvesPar.rda |binary data/wtiSwap.rda |binary inst/WORDLIST | 7 ++++ man/RTL-package.Rd | 1 man/fxfwd.Rd | 6 ++-- man/getBoC.Rd |only tests/testthat.R | 2 - 33 files changed, 80 insertions(+), 53 deletions(-)
Title: Offline 'Google' Fonts for 'Markdown' and 'Shiny'
Description: Download 'Google' fonts and generate 'CSS' to use in 'rmarkdown' documents and
'shiny' applications. Some popular fonts are included and ready to use.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Mario Ranftl [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between gfonts versions 0.1.3 dated 2021-09-22 and 0.2.0 dated 2023-01-08
gfonts-0.1.3/gfonts/tests/testthat/download_font.yml |only gfonts-0.1.3/gfonts/tests/testthat/setup_font.yml |only gfonts-0.2.0/gfonts/DESCRIPTION | 11 gfonts-0.2.0/gfonts/MD5 | 50 gfonts-0.2.0/gfonts/NEWS.md | 39 gfonts-0.2.0/gfonts/R/api.R | 262 - gfonts-0.2.0/gfonts/R/css.R | 176 - gfonts-0.2.0/gfonts/R/data.R | 2 gfonts-0.2.0/gfonts/R/setup_font.R | 200 - gfonts-0.2.0/gfonts/R/use_pkg_gfont.R | 114 gfonts-0.2.0/gfonts/README.md | 171 - gfonts-0.2.0/gfonts/build/vignette.rds |binary gfonts-0.2.0/gfonts/inst/assets/css/oswald.css | 48 gfonts-0.2.0/gfonts/inst/assets/css/poppins.css | 48 gfonts-0.2.0/gfonts/inst/assets/templates/css_modern.txt | 18 gfonts-0.2.0/gfonts/inst/doc/gfonts.R | 88 gfonts-0.2.0/gfonts/inst/doc/gfonts.Rmd | 268 - gfonts-0.2.0/gfonts/inst/doc/gfonts.html | 742 +++-- gfonts-0.2.0/gfonts/man/included_fonts.Rd | 2 gfonts-0.2.0/gfonts/tests/testthat/generate_css.yml | 43 gfonts-0.2.0/gfonts/tests/testthat/get_all_fonts.yml | 1400 ++++++---- gfonts-0.2.0/gfonts/tests/testthat/get_font_info_montserrat.yml | 50 gfonts-0.2.0/gfonts/tests/testthat/get_font_info_roboto.yml | 43 gfonts-0.2.0/gfonts/tests/testthat/test-api.R | 102 gfonts-0.2.0/gfonts/tests/testthat/test-setup_font.R | 44 gfonts-0.2.0/gfonts/vignettes/articles/included-fonts.Rmd | 360 +- gfonts-0.2.0/gfonts/vignettes/gfonts.Rmd | 268 - 27 files changed, 2567 insertions(+), 1982 deletions(-)
Title: Manage Competition Results
Description: Tools for storing and managing competition results.
Competition is understood as a set of games in which players gain some
abstract scores. There are two ways for storing results: in long (one
row per game-player) and wide (one row per game with fixed amount of
players) formats. This package provides functions for creation and
conversion between them. Also there are functions for computing their
summary and Head-to-Head values for players. They leverage grammar of
data manipulation from 'dplyr'.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between comperes versions 0.2.5 dated 2020-11-23 and 0.2.6 dated 2023-01-08
DESCRIPTION | 8 MD5 | 28 - NEWS.md | 4 R/pairgames.R | 10 R/results-longcr.R | 7 R/results-widecr.R | 12 R/utils.R | 10 README.md | 92 +-- build/vignette.rds |binary inst/doc/formats.html | 781 +++++++++++++++++++------------- inst/doc/manipulation.html | 1075 ++++++++++++++++++++++++++------------------- man/comperes-package.Rd | 2 man/convert-pair-value.Rd | 3 man/h2h_funs.Rd | 4 man/summary_funs.Rd | 4 15 files changed, 1193 insertions(+), 847 deletions(-)
Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js',
a re-usable easy interface JavaScript chart library, based on D3 v4+.
Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts.
All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
NAVER Corp [cph] ,
Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between billboarder versions 0.3.1 dated 2021-03-27 and 0.4.0 dated 2023-01-08
billboarder-0.3.1/billboarder/inst/doc/lines-options.R |only billboarder-0.3.1/billboarder/inst/doc/lines-options.Rmd |only billboarder-0.3.1/billboarder/inst/doc/lines-options.html |only billboarder-0.3.1/billboarder/inst/doc/linked-tooltip.R |only billboarder-0.3.1/billboarder/inst/doc/linked-tooltip.Rmd |only billboarder-0.3.1/billboarder/inst/doc/linked-tooltip.html |only billboarder-0.3.1/billboarder/inst/rmarkdown |only billboarder-0.3.1/billboarder/vignettes/lines-options.Rmd |only billboarder-0.3.1/billboarder/vignettes/linked-tooltip.Rmd |only billboarder-0.4.0/billboarder/DESCRIPTION | 13 billboarder-0.4.0/billboarder/MD5 | 95 billboarder-0.4.0/billboarder/NAMESPACE | 1 billboarder-0.4.0/billboarder/NEWS.md | 219 billboarder-0.4.0/billboarder/R/bb_helpers.R | 2 billboarder-0.4.0/billboarder/R/bb_labs.R | 126 billboarder-0.4.0/billboarder/R/bb_utils.R | 15 billboarder-0.4.0/billboarder/R/billboarder-data.R | 8 billboarder-0.4.0/billboarder/R/billboarder.R | 184 billboarder-0.4.0/billboarder/README.md | 89 billboarder-0.4.0/billboarder/build/vignette.rds |binary billboarder-0.4.0/billboarder/inst/doc/billboarder-intro.R | 179 billboarder-0.4.0/billboarder/inst/doc/billboarder-intro.Rmd | 5 billboarder-0.4.0/billboarder/inst/doc/billboarder-intro.html | 3953 ++++----- billboarder-0.4.0/billboarder/inst/doc/billboarder-mapping.R | 115 billboarder-0.4.0/billboarder/inst/doc/billboarder-mapping.Rmd | 5 billboarder-0.4.0/billboarder/inst/doc/billboarder-mapping.html | 3831 ++++---- billboarder-0.4.0/billboarder/inst/doc/billboarder-options.R | 325 billboarder-0.4.0/billboarder/inst/doc/billboarder-options.Rmd | 5 billboarder-0.4.0/billboarder/inst/doc/billboarder-options.html | 4088 ++++----- billboarder-0.4.0/billboarder/inst/doc/billboarder.R | 626 - billboarder-0.4.0/billboarder/inst/doc/billboarder.Rmd | 9 billboarder-0.4.0/billboarder/inst/doc/billboarder.html | 4347 +++++----- billboarder-0.4.0/billboarder/inst/htmlwidgets/billboarder.js | 26 billboarder-0.4.0/billboarder/inst/htmlwidgets/lib/billboard/billboard.min.css | 4 billboarder-0.4.0/billboarder/inst/htmlwidgets/lib/billboard/billboard.pkgd.min.js | 29 billboarder-0.4.0/billboarder/inst/htmlwidgets/lib/billboard/datalab.min.css | 4 billboarder-0.4.0/billboarder/inst/htmlwidgets/lib/billboard/graph.min.css | 4 billboarder-0.4.0/billboarder/inst/htmlwidgets/lib/billboard/insight.min.css | 4 billboarder-0.4.0/billboarder/inst/htmlwidgets/update.R |only billboarder-0.4.0/billboarder/man/bb_render.Rd |only billboarder-0.4.0/billboarder/man/cdc_prod_filiere.Rd | 2 billboarder-0.4.0/billboarder/man/equilibre_mensuel.Rd | 2 billboarder-0.4.0/billboarder/man/figures/billboarder_proxy.gif |binary billboarder-0.4.0/billboarder/man/figures/lines-subchart.gif |binary billboarder-0.4.0/billboarder/man/figures/lines-zoom-drag.gif |binary billboarder-0.4.0/billboarder/man/figures/scatter_bubble.png |binary billboarder-0.4.0/billboarder/man/figures/scatterchart0.png |binary billboarder-0.4.0/billboarder/man/prod_filiere_long.Rd | 2 billboarder-0.4.0/billboarder/man/prod_par_filiere.Rd | 2 billboarder-0.4.0/billboarder/vignettes/billboarder-intro.Rmd | 5 billboarder-0.4.0/billboarder/vignettes/billboarder-mapping.Rmd | 5 billboarder-0.4.0/billboarder/vignettes/billboarder-options.Rmd | 5 billboarder-0.4.0/billboarder/vignettes/billboarder.Rmd | 9 billboarder-0.4.0/billboarder/vignettes/extra |only 54 files changed, 9284 insertions(+), 9059 deletions(-)
Title: Create Interactive Chart with the JavaScript 'ApexCharts'
Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'.
'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API.
'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut],
Juned Chhipa [cph] ,
Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between apexcharter versions 0.3.1 dated 2022-02-27 and 0.4.0 dated 2023-01-08
DESCRIPTION | 8 LICENSE | 4 MD5 | 365 - NAMESPACE | 241 NEWS.md | 237 R/annotations.R | 872 +-- R/apex-options.R | 776 +-- R/apex-utils.R | 2562 +++++----- R/apex.R | 865 +-- R/apexcharter-package.R | 98 R/apexcharter.R | 315 - R/colors.R | 94 R/data.R | 120 R/facets-utils.R |only R/facets.R | 1058 +--- R/format.R | 128 R/grid.R | 442 - R/labs.R | 118 R/mixed-charts.R | 269 - R/onLoad.R | 80 R/parse-data.R | 258 - R/proxy.R | 490 - R/shiny-input.R | 542 +- R/spark-box.R | 232 R/tooltip.R | 44 R/utils.R | 273 - README.md | 327 - build/vignette.rds |binary inst/apexcharts-locale/ca.json | 110 inst/apexcharts-locale/cs.json | 110 inst/apexcharts-locale/de.json | 110 inst/apexcharts-locale/el.json | 110 inst/apexcharts-locale/en.json | 110 inst/apexcharts-locale/es.json | 110 inst/apexcharts-locale/fi.json | 110 inst/apexcharts-locale/fr.json | 110 inst/apexcharts-locale/he.json | 110 inst/apexcharts-locale/hi.json | 110 inst/apexcharts-locale/hr.json | 110 inst/apexcharts-locale/hu.json | 128 inst/apexcharts-locale/hy.json | 110 inst/apexcharts-locale/id.json | 94 inst/apexcharts-locale/it.json | 110 inst/apexcharts-locale/ja.json | 110 inst/apexcharts-locale/ka.json | 110 inst/apexcharts-locale/ko.json | 110 inst/apexcharts-locale/lt.json | 110 inst/apexcharts-locale/nb.json | 110 inst/apexcharts-locale/nl.json | 110 inst/apexcharts-locale/pl.json | 110 inst/apexcharts-locale/pt-br.json | 110 inst/apexcharts-locale/pt.json | 110 inst/apexcharts-locale/rs.json | 110 inst/apexcharts-locale/ru.json | 110 inst/apexcharts-locale/se.json | 110 inst/apexcharts-locale/sk.json | 110 inst/apexcharts-locale/sl.json | 110 inst/apexcharts-locale/sq.json | 110 inst/apexcharts-locale/th.json | 110 inst/apexcharts-locale/tr.json | 110 inst/apexcharts-locale/ua.json | 110 inst/apexcharts-locale/zh-cn.json | 110 inst/d3-format-locale/ar-001.json | 14 inst/d3-format-locale/ar-AE.json | 14 inst/d3-format-locale/ar-BH.json | 14 inst/d3-format-locale/ar-DJ.json | 14 inst/d3-format-locale/ar-DZ.json | 12 inst/d3-format-locale/ar-EG.json | 14 inst/d3-format-locale/ar-EH.json | 12 inst/d3-format-locale/ar-ER.json | 14 inst/d3-format-locale/ar-IL.json | 14 inst/d3-format-locale/ar-IQ.json | 14 inst/d3-format-locale/ar-JO.json | 14 inst/d3-format-locale/ar-KM.json | 14 inst/d3-format-locale/ar-KW.json | 14 inst/d3-format-locale/ar-LB.json | 14 inst/d3-format-locale/ar-LY.json | 12 inst/d3-format-locale/ar-MA.json | 12 inst/d3-format-locale/ar-MR.json | 14 inst/d3-format-locale/ar-OM.json | 14 inst/d3-format-locale/ar-PS.json | 14 inst/d3-format-locale/ar-QA.json | 14 inst/d3-format-locale/ar-SA.json | 14 inst/d3-format-locale/ar-SD.json | 14 inst/d3-format-locale/ar-SO.json | 14 inst/d3-format-locale/ar-SS.json | 14 inst/d3-format-locale/ar-SY.json | 14 inst/d3-format-locale/ar-TD.json | 14 inst/d3-format-locale/ar-TN.json | 12 inst/d3-format-locale/ar-YE.json | 14 inst/d3-format-locale/ca-ES.json | 12 inst/d3-format-locale/cs-CZ.json | 12 inst/d3-format-locale/de-CH.json | 12 inst/d3-format-locale/de-DE.json | 12 inst/d3-format-locale/en-CA.json | 12 inst/d3-format-locale/en-GB.json | 12 inst/d3-format-locale/en-IE.json | 12 inst/d3-format-locale/en-IN.json | 12 inst/d3-format-locale/en-US.json | 12 inst/d3-format-locale/es-BO.json | 14 inst/d3-format-locale/es-ES.json | 12 inst/d3-format-locale/es-MX.json | 12 inst/d3-format-locale/fi-FI.json | 12 inst/d3-format-locale/fr-CA.json | 12 inst/d3-format-locale/fr-FR.json | 14 inst/d3-format-locale/he-IL.json | 12 inst/d3-format-locale/hu-HU.json | 12 inst/d3-format-locale/it-IT.json | 12 inst/d3-format-locale/ja-JP.json | 12 inst/d3-format-locale/ko-KR.json | 12 inst/d3-format-locale/mk-MK.json | 12 inst/d3-format-locale/nl-NL.json | 12 inst/d3-format-locale/pl-PL.json | 12 inst/d3-format-locale/pt-BR.json | 12 inst/d3-format-locale/ru-RU.json | 12 inst/d3-format-locale/sv-SE.json | 12 inst/d3-format-locale/uk-UA.json | 12 inst/d3-format-locale/zh-CN.json | 12 inst/doc/apexcharter.R | 254 inst/doc/apexcharter.Rmd | 494 - inst/doc/apexcharter.html | 1782 +++++- inst/examples/advanced-configuration.R | 590 +- inst/examples/barcharts.R | 278 - inst/examples/brush-proxy/app.R | 160 inst/examples/brush-proxy/rsconnect/shinyapps.io/dreamrs/example-brush-proxy.dcf | 24 inst/examples/brush/app.R | 140 inst/examples/colors.R | 110 inst/examples/examples-unhcr.R | 348 - inst/examples/heatmap.R | 298 - inst/examples/input/click/app.R | 376 - inst/examples/input/selection/app.R | 104 inst/examples/input/zoom/app.R | 106 inst/examples/pie.R | 78 inst/examples/proxy-update-serie-line.R | 94 inst/examples/proxy/bar-auto/server.R | 64 inst/examples/proxy/bar-auto/ui.R | 80 inst/examples/proxy/gauge-auto/app.R | 114 inst/examples/quick-apex.R | 344 - inst/examples/radial.R | 180 inst/examples/spark/app.R | 130 inst/examples/sync/app.R | 128 inst/examples/timeseries.R | 246 inst/htmlwidgets/apexcharter.js | 2 inst/htmlwidgets/apexcharter.js.LICENSE.txt | 2 man/add-vh-lines.Rd | 152 man/add_event.Rd | 116 man/apex-facets.Rd | 420 - man/apex.Rd | 182 man/apexchart.Rd | 138 man/apexcharter-exports.Rd | 30 man/apexcharter-package.Rd | 28 man/apexcharter-shiny-facets.Rd | 138 man/apexcharter-shiny.Rd | 162 man/ax_proxy_options.Rd | 142 man/ax_proxy_series.Rd | 158 man/format_date.Rd | 34 man/label.Rd | 118 tests/testthat.R | 8 tests/testthat/test-annotations.R | 182 tests/testthat/test-apex-config.R | 154 tests/testthat/test-apex-options.R | 84 tests/testthat/test-apex-utils.R | 94 tests/testthat/test-apex.R | 278 - tests/testthat/test-apexcharter.R | 34 tests/testthat/test-ax_opt.R | 100 tests/testthat/test-colors.R | 72 tests/testthat/test-example-readme.R | 80 tests/testthat/test-facets.R | 526 +- tests/testthat/test-format.R | 10 tests/testthat/test-grid.R | 42 tests/testthat/test-labs.R | 48 tests/testthat/test-mixed-charts.R | 98 tests/testthat/test-parse-data.R | 168 tests/testthat/test-proxy.R | 194 tests/testthat/test-shiny-input.R | 140 tests/testthat/test-spark_box.R | 34 tests/testthat/test-tooltip.R | 24 vignettes/apexcharter.Rmd | 494 - vignettes/extra/advanced-configuration.Rmd | 1648 +++--- vignettes/extra/chart-options.Rmd | 484 - vignettes/extra/facets.Rmd | 264 - vignettes/extra/shiny-integration.Rmd | 470 - vignettes/extra/spark-box.Rmd | 142 vignettes/extra/sync-charts.Rmd | 242 184 files changed, 15422 insertions(+), 14318 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves. Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] ,
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.12.9 dated 2022-03-10 and 0.14.1 dated 2023-01-08
DESCRIPTION | 17 MD5 | 240 ++- NAMESPACE | 2 NEWS.md | 10 R/etc_create_samples.R | 42 R/etc_utils.R | 27 R/etc_utils_autoplot.R | 286 ++-- R/etc_utils_dataframe.R | 139 +- R/etc_utils_fortify.R | 30 R/etc_utils_plot.R | 156 +- R/etc_utils_validate_args.R | 315 ++-- R/etc_utils_validate_obj.R | 43 R/g_auc.R | 17 R/g_auc_ci.R | 73 - R/g_autoplot.R | 160 +- R/g_dataframe.R | 57 R/g_fortify.R | 146 +- R/g_part.R | 100 - R/g_pauc.R | 13 R/g_plot.R | 97 - R/g_print.R | 48 R/main_evalmod.R | 108 + R/mm1_create_mmdat.R | 149 +- R/mm2_join_data.R | 51 R/mm3_reformat_data.R | 108 - R/mm4_format_nfold.R | 31 R/pl1_pipeline_main.R | 42 R/pl2_pipeline_main_aucroc.R | 71 - R/pl2_pipeline_main_basic.R | 118 + R/pl2_pipeline_main_rocprc.R | 106 - R/pl3_calc_auc_with_u.R | 52 R/pl3_create_confmats.R | 81 - R/pl4_calc_measures.R | 145 +- R/pl5_create_curves.R | 104 - R/pl6_calc_average.R | 28 R/precrec.R | 76 - README.md | 108 - build/vignette.rds |binary inst/doc/introduction.R | 80 - inst/doc/introduction.Rmd | 83 - inst/doc/introduction.html | 1241 +++++++++++------- man/as.data.frame.Rd | 44 man/auc.Rd | 17 man/auc_ci.Rd | 10 man/autoplot.Rd | 34 man/evalmod.Rd | 64 man/figures/logo.png |binary man/figures/logo.svg |only man/format_nfold.Rd | 20 man/fortify.Rd | 29 man/mmdata.Rd | 29 man/part.Rd | 17 man/pauc.Rd | 13 man/plot.Rd | 29 man/precrec.Rd | 72 - src/precrec_misc.cpp | 95 - src/precrec_misc.h | 4 src/precrec_mmx.cpp | 23 src/precrec_plx.cpp | 165 +- tests/testthat.R | 2 tests/testthat/Rplots.pdf |only tests/testthat/_snaps |only tests/testthat/setup.R |only tests/testthat/test_g_auc.R | 10 tests/testthat/test_g_auc_ci.R | 57 tests/testthat/test_g_autoplot1_pl.R | 47 tests/testthat/test_g_autoplot2_curves.R | 182 +- tests/testthat/test_g_autoplot3_points.R | 278 ++-- tests/testthat/test_g_datamatrix1_curves.R | 101 + tests/testthat/test_g_datamatrix2_points.R | 38 tests/testthat/test_g_datamatrix3_aucroc.R | 13 tests/testthat/test_g_fortify1_pl.R | 12 tests/testthat/test_g_fortify2_curves.R | 105 + tests/testthat/test_g_fortify3_points.R | 59 tests/testthat/test_g_part.R | 181 +- tests/testthat/test_g_pauc.R | 35 tests/testthat/test_g_plot2_curves.R | 71 - tests/testthat/test_g_plot3_points.R | 89 - tests/testthat/test_g_print.R | 53 tests/testthat/test_main_evalmod.R | 64 tests/testthat/test_mm1_1_mmdata.R | 71 - tests/testthat/test_mm1_2_mmdata_mnames.R | 25 tests/testthat/test_mm1_3_mmdata_nfold.R | 112 - tests/testthat/test_mm2_1_join_datasets.R | 26 tests/testthat/test_mm2_2_join_scores.R | 16 tests/testthat/test_mm2_3_join_labels.R | 19 tests/testthat/test_mm3_1_reformat_data_scores.R | 17 tests/testthat/test_mm3_2_reformat_data_labels.R | 14 tests/testthat/test_mm3_3_reformat_data_main.R | 23 tests/testthat/test_mm3_4_reformat_data_singleclass.R | 16 tests/testthat/test_mm4_1_format_nfold.R | 40 tests/testthat/test_pl1_1_pl_main.R | 84 + tests/testthat/test_pl2_1_pl_main_rocprc.R | 70 - tests/testthat/test_pl2_2_pl_main_basic.R | 116 + tests/testthat/test_pl2_3_pl_main_aucroc.R | 6 tests/testthat/test_pl3_1_create_confmats.R | 157 +- tests/testthat/test_pl3_2_calc_auc_with_u.R | 61 tests/testthat/test_pl4_1_calc_measures.R | 301 ++-- tests/testthat/test_pl5_1_create_roc.R | 414 ++++-- tests/testthat/test_pl5_2_create_prc.R | 452 ++++-- tests/testthat/test_pl5_3_create_curves.R | 234 ++- tests/testthat/test_pl6_1_calc_avg_points.R | 358 +++-- tests/testthat/test_pl6_2_calc_avg_curves.R | 128 + tests/testthat/test_uc1_usecases.R | 59 tests/testthat/test_uc2_usecases.R | 74 - vignettes/introduction.Rmd | 83 - 106 files changed, 6061 insertions(+), 3777 deletions(-)
Title: Interface to the 'MODIS Land Products Subsets' Web Services
Description: Programmatic interface to the Oak Ridge National Laboratories
'MODIS Land Products Subsets' web services
(<https://modis.ornl.gov/data/modis_webservice.html>). Allows for easy
downloads of 'MODIS' time series directly to your R workspace or
your computer.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between MODISTools versions 1.1.2 dated 2022-04-04 and 1.1.3 dated 2023-01-08
MODISTools-1.1.2/MODISTools/R/mt_to_raster.R |only MODISTools-1.1.2/MODISTools/man/mt_to_raster.Rd |only MODISTools-1.1.3/MODISTools/DESCRIPTION | 35 MODISTools-1.1.3/MODISTools/MD5 | 24 MODISTools-1.1.3/MODISTools/NAMESPACE | 5 MODISTools-1.1.3/MODISTools/R/coordinate_conversion.R | 19 MODISTools-1.1.3/MODISTools/R/mt_batch_subset.R | 2 MODISTools-1.1.3/MODISTools/R/mt_to_terra.R |only MODISTools-1.1.3/MODISTools/build/vignette.rds |binary MODISTools-1.1.3/MODISTools/inst/doc/modistools-vignette.R | 14 MODISTools-1.1.3/MODISTools/inst/doc/modistools-vignette.Rmd | 16 MODISTools-1.1.3/MODISTools/inst/doc/modistools-vignette.html | 816 +++++----- MODISTools-1.1.3/MODISTools/man/mt_to_terra.Rd |only MODISTools-1.1.3/MODISTools/tests/testthat/test_coordinate_conversions.R | 40 MODISTools-1.1.3/MODISTools/vignettes/modistools-vignette.Rmd | 16 15 files changed, 543 insertions(+), 444 deletions(-)
Title: Simulation-Based Maximum Likelihood Parameter Estimation
Description: An estimation method that can use computer simulations to
approximate maximum-likelihood estimates even when the likelihood function can not
be evaluated directly. It can be applied whenever it is feasible to conduct many
simulations, but works best when the data is approximately Poisson distributed.
It was originally designed for demographic inference in evolutionary
biology (Naduvilezhath et al., 2011 <doi:10.1111/j.1365-294X.2011.05131.x>,
Mathew et al., 2013 <doi:10.1002/ece3.722>).
It has optional support for conducting coalescent simulation using
the 'coala' package.
Author: Paul Staab [aut],
Lisha Mathew [aut],
Dirk Metzler [aut, ths, cre]
Maintainer: Dirk Metzler <metzler@bio.lmu.de>
Diff between jaatha versions 3.2.2 dated 2022-02-15 and 3.2.3 dated 2023-01-08
DESCRIPTION | 10 +- MD5 | 28 +++---- R/boot_jaatha.R | 23 +++++- R/coala_interface.R | 2 R/jaatha.R | 9 +- README.md | 8 +- inst/CITATION | 2 inst/doc/jaatha-evolution.html | 96 ++++++++++++++++----------- inst/doc/jaatha-intro.Rmd | 2 inst/doc/jaatha-intro.html | 145 ++++++++++++++++++++++++++--------------- man/boot_jaatha.Rd | 17 ++++ man/coarsen_jsfs.Rd | 2 man/create_jaatha_data.Rd | 4 - man/jaatha.Rd | 2 vignettes/jaatha-intro.Rmd | 2 15 files changed, 220 insertions(+), 132 deletions(-)
Title: Exhaustive Chemical Enumeration for United Formula Annotation
Description: A pipeline to annotate a number of peaks from the IDSL.IPA peaklists using an exhaustive chemical enumeration-based approach. This package can perform elemental composition calculations using the following 15 elements : C, B, Br, Cl, K, S, Si, N, H, As, F, I, Na, O, and P.
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.UFAx versions 1.7 dated 2022-11-02 and 1.8 dated 2023-01-08
IDSL.UFAx-1.7/IDSL.UFAx/R/UFAx_molecular_formula_library_search.R |only IDSL.UFAx-1.7/IDSL.UFAx/R/UFAx_score_coefficient_corrector.R |only IDSL.UFAx-1.7/IDSL.UFAx/man/UFAx_molecular_formula_library_search.Rd |only IDSL.UFAx-1.7/IDSL.UFAx/man/UFAx_score_coefficient_corrector.Rd |only IDSL.UFAx-1.8/IDSL.UFAx/DESCRIPTION | 14 IDSL.UFAx-1.8/IDSL.UFAx/MD5 | 16 IDSL.UFAx-1.8/IDSL.UFAx/NAMESPACE | 1 IDSL.UFAx-1.8/IDSL.UFAx/R/UFAx_workflow.R | 722 ++++------ IDSL.UFAx-1.8/IDSL.UFAx/R/global.R | 2 IDSL.UFAx-1.8/IDSL.UFAx/inst/extdata/UFAx_parameters.xlsx |binary IDSL.UFAx-1.8/IDSL.UFAx/man/UFAx_workflow.Rd | 4 11 files changed, 361 insertions(+), 398 deletions(-)
Title: Flexible 'Tidyverse'-Friendly Simulations
Description: A general, 'tidyverse'-friendly framework
for simulation studies, design analysis, and power analysis.
Specify data generation, define varying parameters, generate data,
fit models, and tidy model results in a single pipeline, without
needing loops or custom functions.
Author: Ethan Brown [aut, cre] ,
Jeffrey Bye [ctb]
Maintainer: Ethan Brown <ecbrown@umn.edu>
Diff between simpr versions 0.2.2 dated 2022-02-12 and 0.2.3 dated 2023-01-08
DESCRIPTION | 8 MD5 | 22 +- NEWS.md | 3 R/apply_fits.R | 4 R/generate.R | 2 build/vignette.rds |binary inst/doc/optimization.html | 210 +++++++++++-------- inst/doc/reproducibility.html | 192 +++++++++-------- inst/doc/simpr.html | 430 ++++++++++++++++++++++++++-------------- inst/doc/simulation-errors.html | 302 +++++++++++++++++----------- tests/testthat/test_calc_tidy.R | 8 tests/testthat/test_errors.R | 3 12 files changed, 727 insertions(+), 457 deletions(-)
Title: Implementation of Unsupervised Neural Architectures
Description: Implementation of several unsupervised neural networks,
from building their architecture to their training and evaluation. Available
networks are auto-encoders including their main variants: sparse, contractive,
denoising, robust and variational, as described in Charte et al. (2018)
<doi:10.1016/j.inffus.2017.12.007>.
Author: David Charte [aut, cre] ,
Francisco Charte [aut] ,
Francisco Herrera [aut]
Maintainer: David Charte <fdavidcl@ugr.es>
Diff between ruta versions 1.1.0 dated 2019-03-18 and 1.2.0 dated 2023-01-08
ruta-1.1.0/ruta/R/jacobian.R |only ruta-1.2.0/ruta/DESCRIPTION | 20 - ruta-1.2.0/ruta/MD5 | 132 ++++---- ruta-1.2.0/ruta/NAMESPACE | 14 ruta-1.2.0/ruta/R/autoencoder.R | 116 ++++--- ruta-1.2.0/ruta/R/autoencoder_contractive.R | 39 -- ruta-1.2.0/ruta/R/autoencoder_denoising.R | 5 ruta-1.2.0/ruta/R/autoencoder_sparse.R | 19 - ruta-1.2.0/ruta/R/autoencoder_variational.R | 45 +- ruta-1.2.0/ruta/R/autoencoder_weight_decay.R | 3 ruta-1.2.0/ruta/R/evaluate.R | 10 ruta-1.2.0/ruta/R/filter.R | 21 - ruta-1.2.0/ruta/R/generics.R | 1 ruta-1.2.0/ruta/R/layers.R | 6 ruta-1.2.0/ruta/R/network.R | 31 + ruta-1.2.0/ruta/R/network_plot.R | 2 ruta-1.2.0/ruta/R/save.R | 17 - ruta-1.2.0/ruta/README.md | 46 +- ruta-1.2.0/ruta/build/vignette.rds |binary ruta-1.2.0/ruta/inst/doc/architectures.R | 11 ruta-1.2.0/ruta/inst/doc/architectures.Rmd | 5 ruta-1.2.0/ruta/inst/doc/architectures.html | 276 +++++++++-------- ruta-1.2.0/ruta/inst/doc/troubleshooting.html | 193 +++++++---- ruta-1.2.0/ruta/man/apply_filter.Rd | 2 ruta-1.2.0/ruta/man/autoencode.Rd | 15 ruta-1.2.0/ruta/man/autoencoder.Rd | 11 ruta-1.2.0/ruta/man/autoencoder_contractive.Rd | 14 ruta-1.2.0/ruta/man/autoencoder_denoising.Rd | 31 + ruta-1.2.0/ruta/man/autoencoder_robust.Rd | 11 ruta-1.2.0/ruta/man/autoencoder_sparse.Rd | 19 - ruta-1.2.0/ruta/man/autoencoder_variational.Rd | 22 - ruta-1.2.0/ruta/man/configure.Rd |only ruta-1.2.0/ruta/man/contraction.Rd | 7 ruta-1.2.0/ruta/man/conv.Rd | 22 - ruta-1.2.0/ruta/man/correntropy.Rd | 7 ruta-1.2.0/ruta/man/dense.Rd | 11 ruta-1.2.0/ruta/man/dropout.Rd | 11 ruta-1.2.0/ruta/man/evaluate.Rd | 14 ruta-1.2.0/ruta/man/evaluation_metric.Rd | 6 ruta-1.2.0/ruta/man/generate.Rd | 14 ruta-1.2.0/ruta/man/input.Rd | 11 ruta-1.2.0/ruta/man/is_contractive.Rd | 2 ruta-1.2.0/ruta/man/is_denoising.Rd | 2 ruta-1.2.0/ruta/man/is_robust.Rd | 2 ruta-1.2.0/ruta/man/is_trained.Rd | 2 ruta-1.2.0/ruta/man/is_variational.Rd | 2 ruta-1.2.0/ruta/man/layer_keras.Rd | 11 ruta-1.2.0/ruta/man/loss_variational.Rd | 11 ruta-1.2.0/ruta/man/make_contractive.Rd | 2 ruta-1.2.0/ruta/man/make_denoising.Rd | 6 ruta-1.2.0/ruta/man/make_robust.Rd | 2 ruta-1.2.0/ruta/man/new_autoencoder.Rd | 2 ruta-1.2.0/ruta/man/noise_cauchy.Rd | 10 ruta-1.2.0/ruta/man/noise_gaussian.Rd | 10 ruta-1.2.0/ruta/man/noise_ones.Rd | 10 ruta-1.2.0/ruta/man/noise_saltpepper.Rd | 10 ruta-1.2.0/ruta/man/noise_zeros.Rd | 10 ruta-1.2.0/ruta/man/output.Rd | 11 ruta-1.2.0/ruta/man/save_as.Rd | 27 - ruta-1.2.0/ruta/man/to_keras.ruta_autoencoder.Rd | 15 ruta-1.2.0/ruta/man/to_keras.ruta_layer_input.Rd | 9 ruta-1.2.0/ruta/man/to_keras.ruta_layer_variational.Rd | 7 ruta-1.2.0/ruta/man/to_keras.ruta_loss_named.Rd | 6 ruta-1.2.0/ruta/man/to_keras.ruta_network.Rd | 4 ruta-1.2.0/ruta/man/to_keras.ruta_sparsity.Rd | 4 ruta-1.2.0/ruta/man/train.ruta_autoencoder.Rd | 68 ++-- ruta-1.2.0/ruta/man/variational_block.Rd | 13 ruta-1.2.0/ruta/vignettes/architectures.Rmd | 5 68 files changed, 863 insertions(+), 640 deletions(-)
Title: Interface to the API 'Sede Electronica Del Catastro'
Description: Access public spatial data available under the 'INSPIRE'
directive. Tools for downloading references and addresses of
properties, as well as map images.
Author: Ángel Delgado Panadero [aut, cph]
,
Inaki Ucar [ctb] ,
Diego Hernangomez [aut, cre]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between CatastRo versions 0.2.2 dated 2022-05-27 and 0.2.3 dated 2023-01-08
DESCRIPTION | 10 - MD5 | 112 ++++++------- NAMESPACE | 1 NEWS.md | 5 R/CatastRo-package.R | 2 R/atom_ad_db.R | 18 +- R/atom_bu.R | 1 R/atom_bu_db.R | 18 +- R/atom_cp.R | 1 R/atom_cp_db.R | 18 +- R/cache_set.R | 3 R/data.R | 9 - R/ovc_cpmrc.R | 2 R/ovc_munic.R | 2 R/ovc_provinces.R | 4 R/ovc_rccoor.R | 1 R/ovc_rccoor_distancia.R | 4 R/search_coords.R | 2 R/utils_atom.R | 1 R/utils_download.R | 9 - R/utils_read.R | 2 R/utils_wfs.R | 13 - R/wfs_ad.R | 20 +- R/wfs_bu.R | 27 +-- R/wfs_cp.R | 39 ++-- R/wms_all.R | 51 ++++-- README.md | 36 ++-- build/vignette.rds |binary data/catr_srs_values.rda |binary inst/WORDLIST | 10 - inst/doc/CatastRo.Rmd | 30 ++- inst/doc/CatastRo.html | 194 ++++++++++++------------ inst/doc/ovcservice.html | 124 ++++++++------- man/catr_atom_get_address_db.Rd | 18 +- man/catr_atom_get_buildings_db.Rd | 18 +- man/catr_atom_get_parcels_db.Rd | 18 +- man/catr_srs_values.Rd | 8 man/catr_wfs_get_address.Rd | 17 +- man/catr_wfs_get_buildings.Rd | 23 +- man/catr_wfs_get_parcels.Rd | 27 +-- man/catr_wms_get_layer.Rd | 18 +- man/figures/README-atom-1.png |binary man/figures/README-wfs-1.png |binary man/figures/README-wms-1.png |binary man/figures/lifecycle-deprecated.svg | 2 man/figures/logo.png |binary tests/testthat/test-catr_atom_ad_db.R | 15 + tests/testthat/test-catr_atom_bu_db.R | 15 + tests/testthat/test-catr_atom_cp_db.R | 15 + tests/testthat/test-catr_cache_dir.R | 1 tests/testthat/test-catr_ovc_rccoor_distancia.R | 15 + tests/testthat/test-catr_wfs_cp.R | 4 tests/testthat/test-catr_wms.R | 5 vignettes/CatastRo.Rmd | 30 ++- vignettes/dataviz-1.png |binary vignettes/minimal-1.png |binary vignettes/santbernabeu-1.png |binary 57 files changed, 569 insertions(+), 449 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the mixed-model-equations-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.2.0 dated 2022-09-10 and 4.2.0.1 dated 2023-01-08
CHANGELOG | 17 DESCRIPTION | 8 MD5 | 84 - NAMESPACE | 2 R/FUN_utils.R | 144 +- R/GWAS.R | 169 ++- R/mmec.R | 90 - R/mmer.R | 80 - build/vignette.rds |binary data/DT_augment.RData |binary data/DT_btdata.RData |binary data/DT_cornhybrids.RData |binary data/DT_cpdata.RData |binary data/DT_example.RData |binary data/DT_expdesigns.RData |binary data/DT_fulldiallel.RData |binary data/DT_gryphon.RData |binary data/DT_h2.RData |binary data/DT_halfdiallel.RData |binary data/DT_ige.RData |binary data/DT_legendre.RData |binary data/DT_mohring.RData |binary data/DT_polyploid.RData |binary data/DT_rice.RData |binary data/DT_sleepstudy.RData |binary data/DT_technow.RData |binary data/DT_wheat.RData |binary data/DT_yatesoats.RData |binary inst/doc/v1.sommer.quick.start.pdf |binary inst/doc/v2.sommer.changes.and.faqs.R | 13 inst/doc/v2.sommer.changes.and.faqs.Rmd | 16 man/GWAS.Rd | 22 man/mmec.Rd | 138 +- man/vsc.Rd | 54 - src/MNR.cpp | 557 +++++------ tests/testthat/test-predict.R | 8 vignettes/v1.sommer.quick.start.html | 1202 +++++++++++++++-------- vignettes/v2.sommer.changes.and.faqs.Rmd | 16 vignettes/v2.sommer.changes.and.faqs.html | 868 ++++++++++------- vignettes/v3.sommer.qg.html | 1506 +++++++++++++++++------------- vignettes/v4.sommer.gxe.html | 722 ++++++++------ vignettes/v5.sommer.vs.lme4.html | 452 ++++----- vignettes/v6.sommer.spatial.html | 380 ++++--- 43 files changed, 3819 insertions(+), 2729 deletions(-)
Title: Soft Maximin Estimation for Large Scale Heterogeneous Data
Description: Efficient procedure for solving the soft maximin problem for large scale heterogeneous data, see Lund, Mogensen and Hansen (2022) <doi:10.1111/sjos.12580>. Currently Lasso and SCAD penalized estimation is implemented. Note this package subsumes and replaces the SMMA package.
Author: Adam Lund [aut, cre]
Maintainer: Adam Lund <adam.lund@math.ku.dk>
Diff between SMME versions 1.1 dated 2022-05-01 and 1.1.1 dated 2023-01-08
DESCRIPTION | 8 ++-- MD5 | 10 ++--- R/SMME.R | 101 ++++++++++++++++++++++++++++++++++-------------------- R/SMME_print.R | 2 - man/SMME.Rd | 63 +++++++++++++++++---------------- man/print.SMME.Rd | 1 6 files changed, 107 insertions(+), 78 deletions(-)
Title: Import Origin(R) Project Files
Description: Read the data from Origin(R) project files ('*.opj')
<https://www.originlab.com/doc/User-Guide/Origin-File-Types>.
No write support is planned.
Author: Miquel Garriga [aut, cph],
Stefan Gerlach [aut, cph],
Ion Vasilief [aut, cph],
Alex Kargovsky [aut, cph],
Knut Franke [ctb, cph],
Alexander Semke [ctb, cph],
Tilman Benkert [ctb, cph],
Kasper Peeters [ctb, cph],
Russell Standish [ctb, cph],
Ivan Kryl [...truncated...]
Maintainer: Ivan Krylov <krylov.r00t@gmail.com>
Diff between Ropj versions 0.3-2 dated 2022-03-14 and 0.3-3 dated 2023-01-08
Ropj-0.3-2/Ropj/src/liborigin/COPYING |only Ropj-0.3-2/Ropj/src/liborigin/FORMAT |only Ropj-0.3-2/Ropj/src/liborigin/README |only Ropj-0.3-3/Ropj/DESCRIPTION | 6 Ropj-0.3-3/Ropj/MD5 | 40 Ropj-0.3-3/Ropj/R/read.opj.R | 39 Ropj-0.3-3/Ropj/build/partial.rdb |binary Ropj-0.3-3/Ropj/inst/NEWS.Rd | 23 Ropj-0.3-3/Ropj/inst/tree.opj |binary Ropj-0.3-3/Ropj/man/read.opj.Rd | 6 Ropj-0.3-3/Ropj/src/Makevars | 4 Ropj-0.3-3/Ropj/src/RcppExports.cpp | 5 Ropj-0.3-3/Ropj/src/liborigin.cpp |only Ropj-0.3-3/Ropj/src/liborigin/OriginAnyParser.cpp | 6173 +++++++++++----------- Ropj-0.3-3/Ropj/src/liborigin/OriginAnyParser.h | 140 Ropj-0.3-3/Ropj/src/liborigin/OriginFile.cpp | 388 - Ropj-0.3-3/Ropj/src/liborigin/OriginFile.h | 95 Ropj-0.3-3/Ropj/src/liborigin/OriginObj.h | 2097 +++---- Ropj-0.3-3/Ropj/src/liborigin/OriginParser.cpp | 397 - Ropj-0.3-3/Ropj/src/liborigin/OriginParser.h | 103 Ropj-0.3-3/Ropj/src/liborigin/endianfstream.hh | 415 - Ropj-0.3-3/Ropj/src/liborigin/tree.hh | 4964 +++++++++-------- Ropj-0.3-3/Ropj/src/read_opj.cpp | 4 23 files changed, 7670 insertions(+), 7229 deletions(-)
Title: An Interface to the Nexus Class Library
Description: An interface to the Nexus Class Library which allows parsing
of NEXUS, Newick and other phylogenetic tree file formats. It provides
elements of the file that can be used to build phylogenetic objects
such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality
is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
Author: Francois Michonneau [aut, cre]
,
Ben Bolker [aut] ,
Mark Holder [aut] ,
Paul Lewis [aut] ,
Brian O'Meara [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between rncl versions 0.8.6 dated 2022-03-18 and 0.8.7 dated 2023-01-08
rncl-0.8.6/rncl/inst/nexusfiles/test_subset_alltaxa.nex |only rncl-0.8.6/rncl/src/ncl/20180727-075226-r-pkg-update-err.log |only rncl-0.8.6/rncl/src/ncl/20180727-075226-r-pkg-update-out.log |only rncl-0.8.7/rncl/DESCRIPTION | 6 +-- rncl-0.8.7/rncl/MD5 | 17 ++++------- rncl-0.8.7/rncl/NEWS.md | 5 +++ rncl-0.8.7/rncl/build/partial.rdb |binary rncl-0.8.7/rncl/inst/nexusfiles/co1.nex | 2 - rncl-0.8.7/rncl/src/GetNCL.cpp | 2 - rncl-0.8.7/rncl/src/ncl/nxsstring.h | 8 ++--- rncl-0.8.7/rncl/src/nxsstring.cpp | 4 +- 11 files changed, 23 insertions(+), 21 deletions(-)
Title: United Formula Annotation (UFA) for HRMS Data Processing
Description: A pipeline to annotate chromatography peaks from the IDSL.IPA pipeline with molecular formulas of a prioritized chemical space using an isotopic profile matching approach. The IDSL.UFA pipeline only requires mass spectrometry level 1 (MS1) data for formula annotation.
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.UFA versions 1.7 dated 2022-11-01 and 1.8 dated 2023-01-08
IDSL.UFA-1.7/IDSL.UFA/R/UFA_profile_visualizer.R |only IDSL.UFA-1.7/IDSL.UFA/R/UFA_profile_visualizer_xlsxAnalyzer.R |only IDSL.UFA-1.7/IDSL.UFA/R/UFA_score_coefficient_corrector.R |only IDSL.UFA-1.7/IDSL.UFA/R/UFA_score_coefficient_workflow.R |only IDSL.UFA-1.7/IDSL.UFA/R/extended_SENIOR_rule_check.R |only IDSL.UFA-1.7/IDSL.UFA/R/identification_score.R |only IDSL.UFA-1.7/IDSL.UFA/R/isotopic_profile_molecular_formula_feeder.R |only IDSL.UFA-1.7/IDSL.UFA/R/molecular_formulas_source_IPDB.R |only IDSL.UFA-1.7/IDSL.UFA/R/monoisotopic_mass_calculator.R |only IDSL.UFA-1.7/IDSL.UFA/R/score_coefficient_evaluation.R |only IDSL.UFA-1.7/IDSL.UFA/R/score_coefficients_optimization.R |only IDSL.UFA-1.7/IDSL.UFA/R/zero_score_function.R |only IDSL.UFA-1.7/IDSL.UFA/data |only IDSL.UFA-1.7/IDSL.UFA/man/IUPAC_Isotopes.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/UFA_profile_visualizer.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/UFA_profile_visualizer_xlsxAnalyzer.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/UFA_score_coefficient_corrector.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/UFA_score_coefficient_workflow.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/extended_SENIOR_rule_check.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/identification_score.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/isotopic_profile_molecular_formula_feeder.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/molecular_formulas_source_IPDB.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/monoisotopic_mass_calculator.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/score_coefficient_evaluation.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/score_coefficients_optimization.Rd |only IDSL.UFA-1.7/IDSL.UFA/man/zero_score_function.Rd |only IDSL.UFA-1.8/IDSL.UFA/DESCRIPTION | 13 IDSL.UFA-1.8/IDSL.UFA/MD5 | 121 - IDSL.UFA-1.8/IDSL.UFA/NAMESPACE | 2 IDSL.UFA-1.8/IDSL.UFA/R/UFA_IPdbMerger.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_PubChem_formula_extraction.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_enumerated_chemical_space.R | 509 +++--- IDSL.UFA-1.8/IDSL.UFA/R/UFA_enumerated_chemical_space_xlsxAnalyzer.R | 767 +++++----- IDSL.UFA-1.8/IDSL.UFA/R/UFA_formula_source.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_formula_source_xlsxAnalyzer.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_locate_regex.R | 8 IDSL.UFA-1.8/IDSL.UFA/R/UFA_score_coefficients_corrector.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_score_function_optimization.R |only IDSL.UFA-1.8/IDSL.UFA/R/UFA_score_function_optimization_xlsxAnalyzer.R | 525 +++--- IDSL.UFA-1.8/IDSL.UFA/R/UFA_workflow.R | 325 ++-- IDSL.UFA-1.8/IDSL.UFA/R/UFA_xlsxAnalyzer.R | 628 ++++---- IDSL.UFA-1.8/IDSL.UFA/R/aggregatedIPdbListGenerator.R |only IDSL.UFA-1.8/IDSL.UFA/R/aligned_molecular_formula_annotator.R | 129 - IDSL.UFA-1.8/IDSL.UFA/R/detect_formula_sets.R | 10 IDSL.UFA-1.8/IDSL.UFA/R/element_sorter.R | 76 IDSL.UFA-1.8/IDSL.UFA/R/extendedSENIORrule.R |only IDSL.UFA-1.8/IDSL.UFA/R/formula_adduct_calculator.R | 22 IDSL.UFA-1.8/IDSL.UFA/R/formula_vector_generator.R | 69 IDSL.UFA-1.8/IDSL.UFA/R/global.R | 2 IDSL.UFA-1.8/IDSL.UFA/R/hill_molecular_formula_printer.R | 181 +- IDSL.UFA-1.8/IDSL.UFA/R/identificationScoreCalculator.R |only IDSL.UFA-1.8/IDSL.UFA/R/ionization_pathway_deconvoluter.R | 186 +- IDSL.UFA-1.8/IDSL.UFA/R/isotopic_profile_calculator.R | 284 ++- IDSL.UFA-1.8/IDSL.UFA/R/molecularFormula2IPdb.R |only IDSL.UFA-1.8/IDSL.UFA/R/molecular_formula_annotator.R | 365 +++- IDSL.UFA-1.8/IDSL.UFA/R/molecular_formula_elements_filter.R |only IDSL.UFA-1.8/IDSL.UFA/R/molecular_formula_library_generator.R | 2 IDSL.UFA-1.8/IDSL.UFA/R/molecular_formula_library_search.R | 89 - IDSL.UFA-1.8/IDSL.UFA/R/monoisotopicMassCalculator.R |only IDSL.UFA-1.8/IDSL.UFA/R/scoreCoefficientsEvaluation.R |only IDSL.UFA-1.8/IDSL.UFA/R/scoreCoefficientsOptimization.R |only IDSL.UFA-1.8/IDSL.UFA/R/scoreCoefficientsReplicate.R |only IDSL.UFA-1.8/IDSL.UFA/build/partial.rdb |binary IDSL.UFA-1.8/IDSL.UFA/inst/extdata/IUPAC_Isotopes.rda |only IDSL.UFA-1.8/IDSL.UFA/inst/extdata/UFA_parameters.xlsx |binary IDSL.UFA-1.8/IDSL.UFA/man/UFA_IPdbMerger.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_PubChem_formula_extraction.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_enumerated_chemical_space.Rd | 4 IDSL.UFA-1.8/IDSL.UFA/man/UFA_enumerated_chemical_space_xlsxAnalyzer.Rd | 6 IDSL.UFA-1.8/IDSL.UFA/man/UFA_formula_source.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_formula_source_xlsxAnalyzer.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_locate_regex.Rd | 19 IDSL.UFA-1.8/IDSL.UFA/man/UFA_score_coefficients_corrector.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_score_function_optimization.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/UFA_score_function_optimization_xlsxAnalyzer.Rd | 3 IDSL.UFA-1.8/IDSL.UFA/man/aggregatedIPdbListGenerator.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/element_sorter.Rd | 14 IDSL.UFA-1.8/IDSL.UFA/man/extendedSENIORrule.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/formula_vector_generator.Rd | 24 IDSL.UFA-1.8/IDSL.UFA/man/identificationScoreCalculator.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/ionization_pathway_deconvoluter.Rd | 2 IDSL.UFA-1.8/IDSL.UFA/man/isotopic_profile_calculator.Rd | 100 - IDSL.UFA-1.8/IDSL.UFA/man/molecularFormula2IPdb.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/molecular_formula_annotator.Rd | 26 IDSL.UFA-1.8/IDSL.UFA/man/molecular_formula_elements_filter.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/molecular_formula_library_search.Rd | 9 IDSL.UFA-1.8/IDSL.UFA/man/monoisotopicMassCalculator.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/scoreCoefficientsEvaluation.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/scoreCoefficientsOptimization.Rd |only IDSL.UFA-1.8/IDSL.UFA/man/scoreCoefficientsReplicate.Rd |only 90 files changed, 2600 insertions(+), 1920 deletions(-)
Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning
system sponsored by Microsoft Research (having started at Yahoo! Research)
and written by John Langford along with a number of contributors. This R
package does not include the distributed computing implementation of the
cluster/ directory of the upstream sources. Use of the software as a network
service is also not directly supported as the aim is a simpler direct call
from R for validation and comparison. Note that this package contains an
embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub
repo <https://github.com/rvw-org/rvw-legacy> can provide an alternative using
an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RVowpalWabbit versions 0.0.17 dated 2022-10-05 and 0.0.18 dated 2023-01-08
ChangeLog | 24 ++++++++++++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- cleanup | 2 +- configure | 18 +++++++++--------- configure.ac | 2 +- src/gd.cc | 4 ++-- src/global_data.cc | 8 ++++---- src/parse_regressor.cc | 24 ++++++++++++------------ src/parser.cc | 11 ++++++----- 10 files changed, 72 insertions(+), 47 deletions(-)
Title: Derivative-Free Optimization in R using C++
Description: Perform derivative-free optimization algorithms in R using C++.
A wrapper interface is provided to call C function of the 'bobyqa' implementation
(See <https://github.com/emmt/Algorithms/tree/master/bobyqa>).
Author: Sam Watson [aut],
Yi Pan [aut, cre],
Éric Thiebaut [aut],
Mike Powell [aut]
Maintainer: Yi Pan <ypan1988@gmail.com>
Diff between rminqa versions 0.2.1 dated 2022-12-14 and 0.2.2 dated 2023-01-08
DESCRIPTION | 6 +++--- MD5 | 4 ++-- inst/include/rbobyqa.h | 4 ++-- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Mediterranean Forest Simulation
Description: Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].
Author: Miquel De Caceres [aut, cre] ,
Shengli Huang [aut] ,
Victor Granda [aut] ,
Antoine Cabon [aut] ,
Aitor Ameztegui [ctb] ,
Jordi Martinez-Vilalta [ctb] ,
Maurizio Mencuccini [ctb] ,
Nicolas Martin-StPaul [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>
Diff between medfate versions 2.8.0 dated 2022-09-14 and 2.9.1 dated 2023-01-08
medfate-2.8.0/medfate/R/emptyforest.R |only medfate-2.8.0/medfate/R/hydrology_interceptionPlot.R |only medfate-2.8.0/medfate/R/redefineSoilLayers.R |only medfate-2.8.0/medfate/R/soilhydrology.R |only medfate-2.8.0/medfate/R/summary.forest.R |only medfate-2.8.0/medfate/man/VerticalProfiles.Rd |only medfate-2.8.0/medfate/man/hydrology_raininterception.Rd |only medfate-2.8.0/medfate/man/modifySpParams.Rd |only medfate-2.8.0/medfate/man/mortality.Rd |only medfate-2.9.1/medfate/DESCRIPTION | 13 medfate-2.9.1/medfate/MD5 | 255 medfate-2.9.1/medfate/R/RcppExports.R | 2690 +++++++++- medfate-2.9.1/medfate/R/VerticalProfiles.R | 166 medfate-2.9.1/medfate/R/defaultControl.R | 129 medfate-2.9.1/medfate/R/defaultManagementFunction.R | 252 medfate-2.9.1/medfate/R/defaultSoilParams.R | 28 medfate-2.9.1/medfate/R/droughtStress.R | 33 medfate-2.9.1/medfate/R/evaluation.R | 138 medfate-2.9.1/medfate/R/extractSubdaily.R | 20 medfate-2.9.1/medfate/R/fireHazard.R | 98 medfate-2.9.1/medfate/R/fordyn.R | 563 +- medfate-2.9.1/medfate/R/fordynutils.R | 39 medfate-2.9.1/medfate/R/forest.R |only medfate-2.9.1/medfate/R/forest_mergeTrees.R | 195 medfate-2.9.1/medfate/R/hydraulics_supplyFunctionPlot.R | 34 medfate-2.9.1/medfate/R/hydraulics_vulnerabilityCurvePlot.R | 11 medfate-2.9.1/medfate/R/hydrology_interception.R |only medfate-2.9.1/medfate/R/hydrology_soil.R |only medfate-2.9.1/medfate/R/modifySpParams.R | 86 medfate-2.9.1/medfate/R/moisture_pressureVolumeCurvePlot.R | 8 medfate-2.9.1/medfate/R/optimization.R | 128 medfate-2.9.1/medfate/R/plot.forest.R | 25 medfate-2.9.1/medfate/R/plot.spwb.R | 166 medfate-2.9.1/medfate/R/plot.spwb_day.R | 115 medfate-2.9.1/medfate/R/plot_internals.R | 27 medfate-2.9.1/medfate/R/plot_lowlevel.R | 39 medfate-2.9.1/medfate/R/print.soil.R | 6 medfate-2.9.1/medfate/R/resistances.R | 24 medfate-2.9.1/medfate/R/shinyplot.R | 79 medfate-2.9.1/medfate/R/soil_retentionCurvePlot.R | 12 medfate-2.9.1/medfate/R/spwb_ldrCalibration.R | 56 medfate-2.9.1/medfate/R/spwb_ldrOptimization.R | 104 medfate-2.9.1/medfate/R/spwb_sensitivity.R | 50 medfate-2.9.1/medfate/R/stand_metrics.R | 46 medfate-2.9.1/medfate/R/summary.spwb.R | 54 medfate-2.9.1/medfate/R/transp_maximumTranspirationModel.R | 65 medfate-2.9.1/medfate/R/transp_stomatalRegulationPlot.R | 36 medfate-2.9.1/medfate/R/waterUseEfficiency.R | 35 medfate-2.9.1/medfate/R/woodformation_relativeGrowthRate.R | 4 medfate-2.9.1/medfate/data/SpParamsMED.rda |binary medfate-2.9.1/medfate/data/exampleforestMED.rda |binary medfate-2.9.1/medfate/data/exampleforestUS.rda |binary medfate-2.9.1/medfate/data/exampleobs.rda |binary medfate-2.9.1/medfate/inst/include/medfate_RcppExports.h | 292 - medfate-2.9.1/medfate/man/biophysics.Rd | 133 medfate-2.9.1/medfate/man/carbon.Rd | 144 medfate-2.9.1/medfate/man/defaultControl.Rd | 228 medfate-2.9.1/medfate/man/defaultManagementFunction.Rd | 134 medfate-2.9.1/medfate/man/defaultSoilParams.Rd | 49 medfate-2.9.1/medfate/man/droughtStress.Rd | 53 medfate-2.9.1/medfate/man/evaluation.Rd | 149 medfate-2.9.1/medfate/man/extractSubdaily.Rd | 36 medfate-2.9.1/medfate/man/fireHazard.Rd | 68 medfate-2.9.1/medfate/man/fire_behaviour.Rd | 219 medfate-2.9.1/medfate/man/fordyn.Rd | 155 medfate-2.9.1/medfate/man/forest.Rd | 106 medfate-2.9.1/medfate/man/forest_mergeTrees.Rd | 34 medfate-2.9.1/medfate/man/fuel_properties.Rd | 197 medfate-2.9.1/medfate/man/growth.Rd | 166 medfate-2.9.1/medfate/man/hydraulics_conductancefunctions.Rd | 166 medfate-2.9.1/medfate/man/hydraulics_scalingconductance.Rd | 204 medfate-2.9.1/medfate/man/hydraulics_supplyfunctions.Rd | 500 + medfate-2.9.1/medfate/man/hydrology_interception.Rd |only medfate-2.9.1/medfate/man/hydrology_soil.Rd | 120 medfate-2.9.1/medfate/man/hydrology_verticalInputs.Rd | 98 medfate-2.9.1/medfate/man/light.Rd | 233 medfate-2.9.1/medfate/man/modelInput.Rd | 350 - medfate-2.9.1/medfate/man/modifyParams.Rd |only medfate-2.9.1/medfate/man/moisture.Rd | 138 medfate-2.9.1/medfate/man/mortality_dailyProbability.Rd |only medfate-2.9.1/medfate/man/optimization.Rd | 210 medfate-2.9.1/medfate/man/pheno_updateLeaves.Rd | 65 medfate-2.9.1/medfate/man/photo.Rd | 267 medfate-2.9.1/medfate/man/plant_values.Rd | 194 medfate-2.9.1/medfate/man/plot.forest.Rd | 55 medfate-2.9.1/medfate/man/plot.spwb.Rd | 209 medfate-2.9.1/medfate/man/plot.spwb_day.Rd | 164 medfate-2.9.1/medfate/man/recruitment.Rd | 46 medfate-2.9.1/medfate/man/resetInputs.Rd | 15 medfate-2.9.1/medfate/man/resistances.Rd | 55 medfate-2.9.1/medfate/man/root.Rd | 187 medfate-2.9.1/medfate/man/shinyplot.Rd | 103 medfate-2.9.1/medfate/man/soil.Rd | 95 medfate-2.9.1/medfate/man/soil_texture.Rd | 201 medfate-2.9.1/medfate/man/soil_thermodynamics.Rd | 80 medfate-2.9.1/medfate/man/species_values.Rd | 95 medfate-2.9.1/medfate/man/spwb.Rd | 305 - medfate-2.9.1/medfate/man/spwb_day.Rd | 199 medfate-2.9.1/medfate/man/spwb_ldrCalibration.Rd | 98 medfate-2.9.1/medfate/man/spwb_ldrOptimization.Rd | 152 medfate-2.9.1/medfate/man/spwb_sensitivity.Rd | 78 medfate-2.9.1/medfate/man/stand_values.Rd | 76 medfate-2.9.1/medfate/man/summary.spwb.Rd | 83 medfate-2.9.1/medfate/man/transp_maximumTranspirationModel.Rd | 77 medfate-2.9.1/medfate/man/transp_modes.Rd | 163 medfate-2.9.1/medfate/man/transp_stomatalregulation.Rd | 90 medfate-2.9.1/medfate/man/vprofile_leafAreaDensity.Rd |only medfate-2.9.1/medfate/man/waterUseEfficiency.Rd | 76 medfate-2.9.1/medfate/man/wind.Rd | 116 medfate-2.9.1/medfate/man/woodformation.Rd | 122 medfate-2.9.1/medfate/src/RcppExports.cpp | 867 +-- medfate-2.9.1/medfate/src/biophysicsutils.cpp | 101 medfate-2.9.1/medfate/src/carbon.cpp | 59 medfate-2.9.1/medfate/src/firebehaviour.cpp | 124 medfate-2.9.1/medfate/src/forestutils.cpp | 1272 ++-- medfate-2.9.1/medfate/src/forestutils.h | 13 medfate-2.9.1/medfate/src/fuelstructure.cpp | 241 medfate-2.9.1/medfate/src/growth.cpp | 177 medfate-2.9.1/medfate/src/hydraulics.cpp | 320 + medfate-2.9.1/medfate/src/hydrology.cpp | 117 medfate-2.9.1/medfate/src/lightextinction.cpp | 133 medfate-2.9.1/medfate/src/modelInput.cpp | 306 + medfate-2.9.1/medfate/src/paramutils.cpp | 418 - medfate-2.9.1/medfate/src/paramutils.h | 16 medfate-2.9.1/medfate/src/phenology.cpp | 37 medfate-2.9.1/medfate/src/photosynthesis.cpp | 105 medfate-2.9.1/medfate/src/root.cpp | 92 medfate-2.9.1/medfate/src/soil.cpp | 777 +- medfate-2.9.1/medfate/src/spwb.cpp | 308 + medfate-2.9.1/medfate/src/tissuemoisture.cpp | 56 medfate-2.9.1/medfate/src/transpiration_advanced.cpp | 60 medfate-2.9.1/medfate/src/transpiration_basic.cpp | 162 medfate-2.9.1/medfate/src/windKatul.cpp | 84 medfate-2.9.1/medfate/src/windextinction.cpp | 11 medfate-2.9.1/medfate/src/woodformation.cpp | 55 medfate-2.9.1/medfate/tests/testthat/test_fordyn.R |only medfate-2.9.1/medfate/tests/testthat/test_forest.R |only medfate-2.9.1/medfate/tests/testthat/test_spwb.R |only 138 files changed, 13964 insertions(+), 5424 deletions(-)
Title: Data Smoothing by Interpolating Cubic Splines
Description: We construct the explicit form of clamped cubic interpolating spline (both uniform - knots are equidistant and non-uniform - knots are arbitrary). Using this form, we propose a linear regression model suitable for real data smoothing.
Author: Juraj Hudak, Viliam Kacala, Csaba Torok, Lubomir Antoni
Maintainer: Lubomir Antoni <lubomir.antoni@upjs.sk>
Diff between ICSsmoothing versions 1.2.6 dated 2022-11-06 and 1.2.7 dated 2023-01-08
DESCRIPTION | 10 - MD5 | 12 +- R/forecast_demo.R | 2 README.md | 4 inst/doc/cICS_vignette.html | 87 ++++++++--------- tests/testthat/Rplots.pdf |binary tests/testthat/test_expl_spline.R | 192 +++++++++++++++++++------------------- 7 files changed, 154 insertions(+), 153 deletions(-)