Sun, 08 Jan 2023

Package mboxr (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2019-10-28 0.2.0
2019-07-09 0.1.6
2019-04-21 0.1.5
2019-02-24 0.1.4
2019-01-16 0.1.3
2018-12-30 0.1.2

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Package tvm updated to version 0.5.1 with previous version 0.5.0 dated 2021-04-21

Title: Time Value of Money Functions
Description: Functions for managing cashflows and interest rate curves.
Author: Juan Manuel Truppia
Maintainer: Juan Manuel Truppia <jmtruppia@gmail.com>

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Package ECOTOXr updated to version 1.0.1 with previous version 0.2.0 dated 2022-11-17

Title: Download and Extract Data from US EPA's ECOTOX Database
Description: The US EPA ECOTOX database is a freely available database with a treasure of aquatic and terrestrial ecotoxicological data. As the online search interface doesn't come with an API, this package provides the means to easily access and search the database in R. To this end, all raw tables are downloaded from the EPA website and stored in a local SQLite database.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>

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Package unnest updated to version 0.0.4 with previous version 0.0.3 dated 2021-09-23

Title: Unnest Hierarchical Data Structures
Description: Fast flattening of hierarchical data structures (e.g. JSON, XML) into data.frames with a flexible spec language.
Author: Vitalie Spinu [aut, cre]
Maintainer: Vitalie Spinu <spinuvit@gmail.com>

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Package geocmeans updated to version 0.3.2 with previous version 0.3.1 dated 2022-10-15

Title: Implementing Methods for Spatial Fuzzy Unsupervised Classification
Description: Provides functions to apply spatial fuzzy unsupervised classification, visualize and interpret results. This method is well suited when the user wants to analyze data with a fuzzy clustering algorithm and to account for the spatial dimension of the dataset. In addition, indexes for estimating the spatial consistency and classification quality are proposed. The methods were originally proposed in the field of brain imagery (seed Cai and al. 2007 <doi:10.1016/j.patcog.2006.07.011> and Zaho and al. 2013 <doi:10.1016/j.dsp.2012.09.016>) and recently applied in geography (see Gelb and Apparicio <doi:10.4000/cybergeo.36414>).
Author: Jeremy Gelb [aut, cre], Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>

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Package Compositional updated to version 6.1 with previous version 6.0 dated 2022-11-11

Title: Compositional Data Analysis
Description: Regression, classification, contour plots, hypothesis testing and fitting of distributions for compositional data are some of the functions included. We further include functions for percentages (or proportions). The standard textbook for such data is John Aitchison's (1986) "The statistical analysis of compositional data". Relevant papers include: a) Tsagris M.T., Preston S. and Wood A.T.A. (2011). A data-based power transformation for compositional data. Fourth International International Workshop on Compositional Data Analysis. b) Tsagris M. (2014). The k-NN algorithm for compositional data: a revised approach with and without zero values present. Journal of Data Science, 12(3):519--534. c) Tsagris M. (2015). A novel, divergence based, regression for compositional data. Proceedings of the 28th Panhellenic Statistics Conference, 15-18 April 2015, Athens, Greece, 430--444. d) Tsagris M. (2015). Regression analysis with compositional data containing zero values. Chilean Journal of Stat [...truncated...]
Author: Michail Tsagris [aut, cre], Giorgos Athineou [aut], Abdulaziz Alenazi [ctb], Christos Adam [ctb]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>

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Package spdl updated to version 0.0.4 with previous version 0.0.3 dated 2022-12-14

Title: Wrapper for 'RcppSpdlog' Functions
Description: Logging functions in 'RcppSpdlog' provide access to the logging functionality from the 'spdlog' 'C++' library. This package offers shorter convenience wrappers for the 'R' functions which match the 'C++' functions, namely via, say, 'spdl::debug()' at the debug level. The actual formatting is done by the 'fmt::format()' function from the 'fmtlib' library (that is also 'std::format()' in 'C++20' or later).
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>

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Package shinyWidgets updated to version 0.7.6 with previous version 0.7.5 dated 2022-11-17

Title: Custom Inputs Widgets for Shiny
Description: Collection of custom input controls and user interface components for 'Shiny' applications. Give your applications a unique and colorful style !
Author: Victor Perrier [aut, cre, cph], Fanny Meyer [aut], David Granjon [aut], Ian Fellows [ctb] , Wil Davis [ctb] , Spencer Matthews [ctb] , JavaScript and CSS libraries authors [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

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Package parallelpam updated to version 1.0.1 with previous version 1.0 dated 2022-11-24

Title: Parallel Partitioning-Around-Medoids (PAM) for Big Sets of Data
Description: Application of the Partitioning-Around-Medoids (PAM) clustering algorithm described in Schubert, E. and Rousseeuw, P.J.: "Fast and eager k-medoids clustering: O(k) runtime improvement of the PAM, CLARA, and CLARANS algorithms." Information Systems, vol. 101, p. 101804, (2021). <doi:10.1016/j.is.2021.101804>. It uses a binary format for storing and retrieval of matrices developed for the 'jmatrix' package but the functionality of 'jmatrix' is included here, so you do not need to install it. Also, it is used by package 'scellpam', so if you have installed it, you do not need to install this package. PAM can be applied to sets of data whose dissimilarity matrix can be very big. It has been tested with up to 100.000 points. It does this with the help of the code developed for other package, 'jmatrix', which allows the matrix not to be loaded in 'R' memory (which would force it to be of double type) but it gets from disk, which allows using float (or even smaller data types). Moreover [...truncated...]
Author: Juan Domingo [aut, cre] , Guillermo Ayala [ctb] , Spanish Ministry of Science and Innovation, MCIN/AEI <doi:10.13039/501100011033> [fnd]
Maintainer: Juan Domingo <Juan.Domingo@uv.es>

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Package RTL updated to version 1.3.2 with previous version 1.3.1 dated 2022-11-15

Title: Risk Tool Library - Trading, Risk, 'Analytics' for Commodities
Description: A toolkit for Commodities 'analytics', risk management and trading professionals. Includes functions for API calls to 'Morningstar Commodities' and 'Genscape'.
Author: Philippe Cote [aut, cre], Nima Safaian [aut]
Maintainer: Philippe Cote <pcote@ualberta.ca>

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Package gfonts updated to version 0.2.0 with previous version 0.1.3 dated 2021-09-22

Title: Offline 'Google' Fonts for 'Markdown' and 'Shiny'
Description: Download 'Google' fonts and generate 'CSS' to use in 'rmarkdown' documents and 'shiny' applications. Some popular fonts are included and ready to use.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], Mario Ranftl [ctb, cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

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Package comperes updated to version 0.2.6 with previous version 0.2.5 dated 2020-11-23

Title: Manage Competition Results
Description: Tools for storing and managing competition results. Competition is understood as a set of games in which players gain some abstract scores. There are two ways for storing results: in long (one row per game-player) and wide (one row per game with fixed amount of players) formats. This package provides functions for creation and conversion between them. Also there are functions for computing their summary and Head-to-Head values for players. They leverage grammar of data manipulation from 'dplyr'.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>

Diff between comperes versions 0.2.5 dated 2020-11-23 and 0.2.6 dated 2023-01-08

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More information about comperes at CRAN
Permanent link

Package billboarder updated to version 0.4.0 with previous version 0.3.1 dated 2021-03-27

Title: Create Interactive Chart with the JavaScript 'Billboard' Library
Description: Provides an 'htmlwidgets' interface to 'billboard.js', a re-usable easy interface JavaScript chart library, based on D3 v4+. Chart types include line charts, scatterplots, bar/lollipop charts, histogram/density plots, pie/donut charts and gauge charts. All charts are interactive, and a proxy method is implemented to smoothly update a chart without rendering it again in 'shiny' apps.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], NAVER Corp [cph] , Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

Diff between billboarder versions 0.3.1 dated 2021-03-27 and 0.4.0 dated 2023-01-08

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Permanent link

Package apexcharter updated to version 0.4.0 with previous version 0.3.1 dated 2022-02-27

Title: Create Interactive Chart with the JavaScript 'ApexCharts' Library
Description: Provides an 'htmlwidgets' interface to 'apexcharts.js'. 'Apexcharts' is a modern JavaScript charting library to build interactive charts and visualizations with simple API. 'Apexcharts' examples and documentation are available here: <https://apexcharts.com/>.
Author: Victor Perrier [aut, cre], Fanny Meyer [aut], Juned Chhipa [cph] , Mike Bostock [cph]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>

Diff between apexcharter versions 0.3.1 dated 2022-02-27 and 0.4.0 dated 2023-01-08

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More information about apexcharter at CRAN
Permanent link

Package precrec updated to version 0.14.1 with previous version 0.12.9 dated 2022-03-10

Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics) curves. Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] , Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>

Diff between precrec versions 0.12.9 dated 2022-03-10 and 0.14.1 dated 2023-01-08

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Package MODISTools updated to version 1.1.3 with previous version 1.1.2 dated 2022-04-04

Title: Interface to the 'MODIS Land Products Subsets' Web Services
Description: Programmatic interface to the Oak Ridge National Laboratories 'MODIS Land Products Subsets' web services (<https://modis.ornl.gov/data/modis_webservice.html>). Allows for easy downloads of 'MODIS' time series directly to your R workspace or your computer.
Author: Koen Hufkens [aut, cre] , BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>

Diff between MODISTools versions 1.1.2 dated 2022-04-04 and 1.1.3 dated 2023-01-08

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Package jaatha updated to version 3.2.3 with previous version 3.2.2 dated 2022-02-15

Title: Simulation-Based Maximum Likelihood Parameter Estimation
Description: An estimation method that can use computer simulations to approximate maximum-likelihood estimates even when the likelihood function can not be evaluated directly. It can be applied whenever it is feasible to conduct many simulations, but works best when the data is approximately Poisson distributed. It was originally designed for demographic inference in evolutionary biology (Naduvilezhath et al., 2011 <doi:10.1111/j.1365-294X.2011.05131.x>, Mathew et al., 2013 <doi:10.1002/ece3.722>). It has optional support for conducting coalescent simulation using the 'coala' package.
Author: Paul Staab [aut], Lisha Mathew [aut], Dirk Metzler [aut, ths, cre]
Maintainer: Dirk Metzler <metzler@bio.lmu.de>

Diff between jaatha versions 3.2.2 dated 2022-02-15 and 3.2.3 dated 2023-01-08

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Package IDSL.UFAx updated to version 1.8 with previous version 1.7 dated 2022-11-02

Title: Exhaustive Chemical Enumeration for United Formula Annotation
Description: A pipeline to annotate a number of peaks from the IDSL.IPA peaklists using an exhaustive chemical enumeration-based approach. This package can perform elemental composition calculations using the following 15 elements : C, B, Br, Cl, K, S, Si, N, H, As, F, I, Na, O, and P.
Author: Sadjad Fakouri-Baygi [cre, aut] , Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>

Diff between IDSL.UFAx versions 1.7 dated 2022-11-02 and 1.8 dated 2023-01-08

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New package FORTLS with initial version 1.2.0
Package: FORTLS
Title: Automatic Processing of Terrestrial-Based Technologies Point Cloud Data for Forestry Purposes
Version: 1.2.0
Date: 2023-01-08
Author: Juan Alberto Molina-Valero [aut, cph, cre], Adela Martinez-Calvo [aut, com], Maria Jose Ginzo Villamayor [com], Manuel Antonio Novo Perez [com], Anika Seppelt [aut, com], Juan Gabriel Álvarez-Gonzalez [aut, ths], Fernando Montes [aut], Cesar Perez-Cr [...truncated...]
Maintainer: Juan Alberto Molina-Valero <juanalberto.molina.valero@usc.es>
Description: Process automation of point cloud data derived from terrestrial-based technologies such as Terrestrial Laser Scanner (TLS) or Simultaneous Localization and Mapping (SLAM). 'FORTLS' enables (i) detection of trees and estimation of tree-level attributes (e.g. diameters and heights), (ii) estimation of stand-level variables (e.g. density, basal area, mean and dominant height), (iii) computation of metrics related to important forest attributes estimated in Forest Inventories at stand-level, and (iv) optimization of plot design for combining TLS data and field measured data. Documentation about 'FORTLS' is described in Molina-Valero et al. (2022, <doi:10.1016/j.envsoft.2022.105337>).
URL: https://github.com/Molina-Valero/FORTLS
BugReports: https://github.com/Molina-Valero/FORTLS/issues
License: GPL-3
Depends: R (>= 3.5.0)
Imports: data.table, dbscan, Distance, htmlwidgets, lidR, methods, moments, plotly, progress, raster, Rcpp(>= 1.0.7), RCSF, rgeos, scales, sf, sp, tidyr, VoxR, vroom
Suggests: devtools, kableExtra, knitr, rmarkdown, systemfonts, testthat
LinkingTo: Rcpp, RcppEigen
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2023-01-08 15:46:13 UTC; JUAN
Repository: CRAN
Date/Publication: 2023-01-08 16:50:05 UTC

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Package simpr updated to version 0.2.3 with previous version 0.2.2 dated 2022-02-12

Title: Flexible 'Tidyverse'-Friendly Simulations
Description: A general, 'tidyverse'-friendly framework for simulation studies, design analysis, and power analysis. Specify data generation, define varying parameters, generate data, fit models, and tidy model results in a single pipeline, without needing loops or custom functions.
Author: Ethan Brown [aut, cre] , Jeffrey Bye [ctb]
Maintainer: Ethan Brown <ecbrown@umn.edu>

Diff between simpr versions 0.2.2 dated 2022-02-12 and 0.2.3 dated 2023-01-08

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Package ruta updated to version 1.2.0 with previous version 1.1.0 dated 2019-03-18

Title: Implementation of Unsupervised Neural Architectures
Description: Implementation of several unsupervised neural networks, from building their architecture to their training and evaluation. Available networks are auto-encoders including their main variants: sparse, contractive, denoising, robust and variational, as described in Charte et al. (2018) <doi:10.1016/j.inffus.2017.12.007>.
Author: David Charte [aut, cre] , Francisco Charte [aut] , Francisco Herrera [aut]
Maintainer: David Charte <fdavidcl@ugr.es>

Diff between ruta versions 1.1.0 dated 2019-03-18 and 1.2.0 dated 2023-01-08

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 68 files changed, 863 insertions(+), 640 deletions(-)

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New package tidyft with initial version 0.5.7
Package: tidyft
Title: Fast and Memory Efficient Data Operations in Tidy Syntax
Version: 0.5.7
Description: Tidy syntax for 'data.table', using modification by reference whenever possible. This toolkit is designed for big data analysis in high-performance desktop or laptop computers. The syntax of the package is similar or identical to 'tidyverse'. It is user friendly, memory efficient and time saving. For more information, check its ancestor package 'tidyfst'.
URL: https://github.com/hope-data-science/tidyft, https://hope-data-science.github.io/tidyft/
BugReports: https://github.com/hope-data-science/tidyft/issues
License: MIT + file LICENSE
Encoding: UTF-8
Imports: data.table (>= 1.12.8), stringr (>= 1.4.0), fst (>= 0.9.0)
Suggests: knitr, rmarkdown, profvis, dplyr, dtplyr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-01-06 14:16:51 UTC; DELL
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Repository: CRAN
Date/Publication: 2023-01-08 14:40:01 UTC

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New package sequoia with initial version 2.4.1
Package: sequoia
Title: Pedigree Inference from SNPs
Version: 2.4.1
Date: 2023-01-07
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Description: Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
License: GPL-2
URL: https://jiscah.github.io/
LazyData: TRUE
Imports: plyr (>= 1.8.0), stats, utils, graphics
Suggests: openxlsx, knitr, rmarkdown, bookdown, kinship2, R.rsp, hexbin, data.table
VignetteBuilder: knitr, R.rsp
NeedsCompilation: yes
Depends: R (>= 3.5.0)
Packaged: 2023-01-07 18:03:08 UTC; jisca
Repository: CRAN
Date/Publication: 2023-01-08 15:00:03 UTC

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New package paramGUI with initial version 2.2.0
Package: paramGUI
Title: A Shiny GUI for some Parameter Estimation Examples
Version: 2.2.0
Description: Allows specification and fitting of some parameter estimation examples inspired by time-resolved spectroscopy via a Shiny GUI.
URL: https://github.com/glotaran/paramGUI/
License: GPL (>= 2)
Depends: R (>= 3.0.0)
Imports: shiny, shinydashboard, TIMP, fields
BugReports: https://github.com/glotaran/paramGUI/issues
Encoding: UTF-8
Language: en-US
LazyData: true
NeedsCompilation: no
Packaged: 2022-12-25 01:33:23 UTC; jsnel
Author: Joris Snellenburg [cre, aut], Katharine Mullen [aut], Ivo van Stokkum [aut]
Maintainer: Joris Snellenburg <j.snellenburg@vu.nl>
Repository: CRAN
Date/Publication: 2023-01-08 15:00:07 UTC

More information about paramGUI at CRAN
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New package MOEADr with initial version 1.1.3
Package: MOEADr
Title: Component-Wise MOEA/D Implementation
Description: Modular implementation of Multiobjective Evolutionary Algorithms based on Decomposition (MOEA/D) [Zhang and Li (2007), <DOI:10.1109/TEVC.2007.892759>] for quick assembling and testing of new algorithmic components, as well as easy replication of published MOEA/D proposals. The full framework is documented in a paper published in the Journal of Statistical Software [<doi:10.18637/jss.v092.i06>].
Version: 1.1.3
Date: 2023-01-06
Imports: FNN, assertthat
Suggests: smoof, scatterplot3d, MASS, grDevices, irace, testthat, knitr, rmarkdown, emoa, ggplot2, reshape2, pkgdown
Depends: R (>= 3.4.0)
Author: Felipe Campelo [aut, cre], Lucas Batista [com], Claus Aranha [aut]
Maintainer: Felipe Campelo <fcampelo@ufmg.br>
License: GPL-2
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://fcampelo.github.io/MOEADr/
BugReports: https://github.com/fcampelo/MOEADr/issues
NeedsCompilation: no
Packaged: 2023-01-06 12:41:15 UTC; campelof
Repository: CRAN
Date/Publication: 2023-01-08 14:50:05 UTC

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New package flexpolyline with initial version 0.2.7
Package: flexpolyline
Title: Flexible Polyline Encoding
Version: 0.2.7
Description: Binding to the C++ implementation of the flexible polyline encoding by HERE <https://github.com/heremaps/flexible-polyline>. The flexible polyline encoding is a lossy compressed representation of a list of coordinate pairs or coordinate triples. The encoding is achieved by: (1) Reducing the decimal digits of each value; (2) encoding only the offset from the previous point; (3) using variable length for each coordinate delta; and (4) using 64 URL-safe characters to display the result.
License: GPL-3
URL: https://munterfi.github.io/flexpolyline/, https://github.com/munterfi/flexpolyline/
BugReports: https://github.com/munterfi/flexpolyline/issues/
LinkingTo: Rcpp
Imports: Rcpp, sf (>= 0.9-3)
Suggests: testthat (>= 2.3.2), stringr (>= 1.4.0), knitr (>= 1.28), rmarkdown (>= 2.1), covr (>= 3.5.0)
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2023-01-06 08:07:17 UTC; munterfi
Author: Merlin Unterfinger [aut, cre] , HERE Europe B.V. [aut, cph]
Maintainer: Merlin Unterfinger <info@munterfinger.ch>
Repository: CRAN
Date/Publication: 2023-01-08 14:50:02 UTC

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Package CatastRo updated to version 0.2.3 with previous version 0.2.2 dated 2022-05-27

Title: Interface to the API 'Sede Electronica Del Catastro'
Description: Access public spatial data available under the 'INSPIRE' directive. Tools for downloading references and addresses of properties, as well as map images.
Author: Ángel Delgado Panadero [aut, cph] , Inaki Ucar [ctb] , Diego Hernangomez [aut, cre]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>

Diff between CatastRo versions 0.2.2 dated 2022-05-27 and 0.2.3 dated 2023-01-08

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Permanent link

New package blockcluster with initial version 4.5.2
Package: blockcluster
Title: Co-Clustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
Version: 4.5.2
Encoding: UTF-8
Date: 2022-12-23
Copyright: Inria
Description: Simultaneous clustering of rows and columns, usually designated by biclustering, co-clustering or block clustering, is an important technique in two way data analysis. It consists of estimating a mixture model which takes into account the block clustering problem on both the individual and variables sets. The 'blockcluster' package provides a bridge between the C++ core library build on top of the 'STK++' library, and the R statistical computing environment. This package allows to co-cluster binary <doi:10.1016/j.csda.2007.09.007>, contingency <doi:10.1080/03610920903140197>, continuous <doi:10.1007/s11634-013-0161-3> and categorical data-sets <doi:10.1007/s11222-014-9472-2>. It also provides utility functions to visualize the results. This package may be useful for various applications in fields of Data mining, Information retrieval, Biology, computer vision and many more. More information about the project and comprehensive tutorial can be found on the link me [...truncated...]
License: GPL (>= 3)
URL: https://gitlab.inria.fr/iovleff/blockcluster
LazyLoad: yes
Depends: R (>= 3.0.2), rtkore (>= 1.5.5)
Imports: methods
LinkingTo: Rcpp
SystemRequirements: GNU make
NeedsCompilation: yes
Packaged: 2022-12-23 08:30:22 UTC; iovleff
Author: Serge Iovleff [aut, cre], Parmeet Singh Bhatia [aut], Josselin Demont [ctb], Vincent Brault [ctb], Vincent Kubicki [ctb], Gerard Goavert [ctb], Christophe Biernacki [ctb], Gilles Celeux [ctb]
Maintainer: Serge Iovleff <Serge.Iovleff@stkpp.org>
Repository: CRAN
Date/Publication: 2023-01-08 14:20:02 UTC

More information about blockcluster at CRAN
Permanent link

New package andrews with initial version 1.1.0
Package: andrews
Title: Various Andrews Curves
Version: 1.1.0
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Depends: R (>= 2.10)
Description: Visualisation of multidimensional data through different Andrews curves.
License: GPL-3
URL: https://github.com/sigbertklinke/andrews (development version)
Encoding: UTF-8
LazyData: true
Imports: grDevices, graphics, primes
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-01-07 09:09:29 UTC; sk
Author: Jaroslav Myslivec [aut], Sigbert Klinke [cre, ctb]
Repository: CRAN
Date/Publication: 2023-01-08 14:20:05 UTC

More information about andrews at CRAN
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Package sommer updated to version 4.2.0.1 with previous version 4.2.0 dated 2022-09-10

Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the mixed-model-equations-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available in sommer.
Author: Giovanny Covarrubias-Pazaran
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>

Diff between sommer versions 4.2.0 dated 2022-09-10 and 4.2.0.1 dated 2023-01-08

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Package SMME updated to version 1.1.1 with previous version 1.1 dated 2022-05-01

Title: Soft Maximin Estimation for Large Scale Heterogeneous Data
Description: Efficient procedure for solving the soft maximin problem for large scale heterogeneous data, see Lund, Mogensen and Hansen (2022) <doi:10.1111/sjos.12580>. Currently Lasso and SCAD penalized estimation is implemented. Note this package subsumes and replaces the SMMA package.
Author: Adam Lund [aut, cre]
Maintainer: Adam Lund <adam.lund@math.ku.dk>

Diff between SMME versions 1.1 dated 2022-05-01 and 1.1.1 dated 2023-01-08

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Package Ropj updated to version 0.3-3 with previous version 0.3-2 dated 2022-03-14

Title: Import Origin(R) Project Files
Description: Read the data from Origin(R) project files ('*.opj') <https://www.originlab.com/doc/User-Guide/Origin-File-Types>. No write support is planned.
Author: Miquel Garriga [aut, cph], Stefan Gerlach [aut, cph], Ion Vasilief [aut, cph], Alex Kargovsky [aut, cph], Knut Franke [ctb, cph], Alexander Semke [ctb, cph], Tilman Benkert [ctb, cph], Kasper Peeters [ctb, cph], Russell Standish [ctb, cph], Ivan Kryl [...truncated...]
Maintainer: Ivan Krylov <krylov.r00t@gmail.com>

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Package rncl updated to version 0.8.7 with previous version 0.8.6 dated 2022-03-18

Title: An Interface to the Nexus Class Library
Description: An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.
Author: Francois Michonneau [aut, cre] , Ben Bolker [aut] , Mark Holder [aut] , Paul Lewis [aut] , Brian O'Meara [aut]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>

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Package IDSL.UFA updated to version 1.8 with previous version 1.7 dated 2022-11-01

Title: United Formula Annotation (UFA) for HRMS Data Processing
Description: A pipeline to annotate chromatography peaks from the IDSL.IPA pipeline with molecular formulas of a prioritized chemical space using an isotopic profile matching approach. The IDSL.UFA pipeline only requires mass spectrometry level 1 (MS1) data for formula annotation.
Author: Sadjad Fakouri-Baygi [cre, aut] , Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>

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Package RVowpalWabbit updated to version 0.0.18 with previous version 0.0.17 dated 2022-10-05

Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning system sponsored by Microsoft Research (having started at Yahoo! Research) and written by John Langford along with a number of contributors. This R package does not include the distributed computing implementation of the cluster/ directory of the upstream sources. Use of the software as a network service is also not directly supported as the aim is a simpler direct call from R for validation and comparison. Note that this package contains an embedded older version of 'Vowpal Wabbit'. The package 'rvw' at the GitHub repo <https://github.com/rvw-org/rvw-legacy> can provide an alternative using an external 'Vowpal Wabbit' library installation.
Author: Dirk Eddelbuettel
Maintainer: Dirk Eddelbuettel <edd@debian.org>

Diff between RVowpalWabbit versions 0.0.17 dated 2022-10-05 and 0.0.18 dated 2023-01-08

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Package rminqa updated to version 0.2.2 with previous version 0.2.1 dated 2022-12-14

Title: Derivative-Free Optimization in R using C++
Description: Perform derivative-free optimization algorithms in R using C++. A wrapper interface is provided to call C function of the 'bobyqa' implementation (See <https://github.com/emmt/Algorithms/tree/master/bobyqa>).
Author: Sam Watson [aut], Yi Pan [aut, cre], Éric Thiebaut [aut], Mike Powell [aut]
Maintainer: Yi Pan <ypan1988@gmail.com>

Diff between rminqa versions 0.2.1 dated 2022-12-14 and 0.2.2 dated 2023-01-08

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New package pulsar with initial version 0.3.9
Package: pulsar
Title: Parallel Utilities for Lambda Selection along a Regularization Path
Version: 0.3.9
Encoding: UTF-8
Description: Model selection for penalized graphical models using the Stability Approach to Regularization Selection ('StARS'), with options for speed-ups including Bounded StARS (B-StARS), batch computing, and other stability metrics (e.g., graphlet stability G-StARS). Christian L. Müller, Richard Bonneau, Zachary Kurtz (2016) <arXiv:1605.07072>.
URL: https://github.com/zdk123/pulsar, https://arxiv.org/abs/1605.07072
BugReports: https://github.com/zdk123/pulsar/issues
Depends: R (>= 3.2.0)
License: GPL (>= 2)
Suggests: batchtools (>= 0.9.10), fs (>= 1.2.2), checkmate (>= 1.8.5), orca, huge, MASS, BigQuic, glmnet, network, cluster, testthat, knitr, rmarkdown
Imports: methods, parallel, graphics, stats, utils, tools, Matrix
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-01-07 02:25:24 UTC; root
Author: Zachary Kurtz [aut, cre], Christian Mueller [aut, ctb]
Maintainer: Zachary Kurtz <zdkurtz@gmail.com>
Repository: CRAN
Date/Publication: 2023-01-08 10:00:02 UTC

More information about pulsar at CRAN
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Package medfate updated to version 2.9.1 with previous version 2.8.0 dated 2022-09-14

Title: Mediterranean Forest Simulation
Description: Functions to simulate Mediterranean forest functioning and dynamics using cohort-based description of vegetation [De Caceres et al. (2015) <doi:10.1016/j.agrformet.2015.06.012>; De Caceres et al. (2021) <doi:10.1016/j.agrformet.2020.108233>].
Author: Miquel De Caceres [aut, cre] , Shengli Huang [aut] , Victor Granda [aut] , Antoine Cabon [aut] , Aitor Ameztegui [ctb] , Jordi Martinez-Vilalta [ctb] , Maurizio Mencuccini [ctb] , Nicolas Martin-StPaul [ctb]
Maintainer: Miquel De Caceres <miquelcaceres@gmail.com>

Diff between medfate versions 2.8.0 dated 2022-09-14 and 2.9.1 dated 2023-01-08

 medfate-2.8.0/medfate/R/emptyforest.R                         |only
 medfate-2.8.0/medfate/R/hydrology_interceptionPlot.R          |only
 medfate-2.8.0/medfate/R/redefineSoilLayers.R                  |only
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 medfate-2.9.1/medfate/DESCRIPTION                             |   13 
 medfate-2.9.1/medfate/MD5                                     |  255 
 medfate-2.9.1/medfate/R/RcppExports.R                         | 2690 +++++++++-
 medfate-2.9.1/medfate/R/VerticalProfiles.R                    |  166 
 medfate-2.9.1/medfate/R/defaultControl.R                      |  129 
 medfate-2.9.1/medfate/R/defaultManagementFunction.R           |  252 
 medfate-2.9.1/medfate/R/defaultSoilParams.R                   |   28 
 medfate-2.9.1/medfate/R/droughtStress.R                       |   33 
 medfate-2.9.1/medfate/R/evaluation.R                          |  138 
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 medfate-2.9.1/medfate/R/hydraulics_supplyFunctionPlot.R       |   34 
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 medfate-2.9.1/medfate/R/plot.forest.R                         |   25 
 medfate-2.9.1/medfate/R/plot.spwb.R                           |  166 
 medfate-2.9.1/medfate/R/plot.spwb_day.R                       |  115 
 medfate-2.9.1/medfate/R/plot_internals.R                      |   27 
 medfate-2.9.1/medfate/R/plot_lowlevel.R                       |   39 
 medfate-2.9.1/medfate/R/print.soil.R                          |    6 
 medfate-2.9.1/medfate/R/resistances.R                         |   24 
 medfate-2.9.1/medfate/R/shinyplot.R                           |   79 
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 medfate-2.9.1/medfate/R/spwb_ldrCalibration.R                 |   56 
 medfate-2.9.1/medfate/R/spwb_ldrOptimization.R                |  104 
 medfate-2.9.1/medfate/R/spwb_sensitivity.R                    |   50 
 medfate-2.9.1/medfate/R/stand_metrics.R                       |   46 
 medfate-2.9.1/medfate/R/summary.spwb.R                        |   54 
 medfate-2.9.1/medfate/R/transp_maximumTranspirationModel.R    |   65 
 medfate-2.9.1/medfate/R/transp_stomatalRegulationPlot.R       |   36 
 medfate-2.9.1/medfate/R/waterUseEfficiency.R                  |   35 
 medfate-2.9.1/medfate/R/woodformation_relativeGrowthRate.R    |    4 
 medfate-2.9.1/medfate/data/SpParamsMED.rda                    |binary
 medfate-2.9.1/medfate/data/exampleforestMED.rda               |binary
 medfate-2.9.1/medfate/data/exampleforestUS.rda                |binary
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 medfate-2.9.1/medfate/man/biophysics.Rd                       |  133 
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 medfate-2.9.1/medfate/man/fordyn.Rd                           |  155 
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 medfate-2.9.1/medfate/man/shinyplot.Rd                        |  103 
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 medfate-2.9.1/medfate/man/transp_modes.Rd                     |  163 
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 medfate-2.9.1/medfate/man/woodformation.Rd                    |  122 
 medfate-2.9.1/medfate/src/RcppExports.cpp                     |  867 +--
 medfate-2.9.1/medfate/src/biophysicsutils.cpp                 |  101 
 medfate-2.9.1/medfate/src/carbon.cpp                          |   59 
 medfate-2.9.1/medfate/src/firebehaviour.cpp                   |  124 
 medfate-2.9.1/medfate/src/forestutils.cpp                     | 1272 ++--
 medfate-2.9.1/medfate/src/forestutils.h                       |   13 
 medfate-2.9.1/medfate/src/fuelstructure.cpp                   |  241 
 medfate-2.9.1/medfate/src/growth.cpp                          |  177 
 medfate-2.9.1/medfate/src/hydraulics.cpp                      |  320 +
 medfate-2.9.1/medfate/src/hydrology.cpp                       |  117 
 medfate-2.9.1/medfate/src/lightextinction.cpp                 |  133 
 medfate-2.9.1/medfate/src/modelInput.cpp                      |  306 +
 medfate-2.9.1/medfate/src/paramutils.cpp                      |  418 -
 medfate-2.9.1/medfate/src/paramutils.h                        |   16 
 medfate-2.9.1/medfate/src/phenology.cpp                       |   37 
 medfate-2.9.1/medfate/src/photosynthesis.cpp                  |  105 
 medfate-2.9.1/medfate/src/root.cpp                            |   92 
 medfate-2.9.1/medfate/src/soil.cpp                            |  777 +-
 medfate-2.9.1/medfate/src/spwb.cpp                            |  308 +
 medfate-2.9.1/medfate/src/tissuemoisture.cpp                  |   56 
 medfate-2.9.1/medfate/src/transpiration_advanced.cpp          |   60 
 medfate-2.9.1/medfate/src/transpiration_basic.cpp             |  162 
 medfate-2.9.1/medfate/src/windKatul.cpp                       |   84 
 medfate-2.9.1/medfate/src/windextinction.cpp                  |   11 
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 138 files changed, 13964 insertions(+), 5424 deletions(-)

More information about medfate at CRAN
Permanent link

Package ICSsmoothing updated to version 1.2.7 with previous version 1.2.6 dated 2022-11-06

Title: Data Smoothing by Interpolating Cubic Splines
Description: We construct the explicit form of clamped cubic interpolating spline (both uniform - knots are equidistant and non-uniform - knots are arbitrary). Using this form, we propose a linear regression model suitable for real data smoothing.
Author: Juraj Hudak, Viliam Kacala, Csaba Torok, Lubomir Antoni
Maintainer: Lubomir Antoni <lubomir.antoni@upjs.sk>

Diff between ICSsmoothing versions 1.2.6 dated 2022-11-06 and 1.2.7 dated 2023-01-08

 DESCRIPTION                       |   10 -
 MD5                               |   12 +-
 R/forecast_demo.R                 |    2 
 README.md                         |    4 
 inst/doc/cICS_vignette.html       |   87 ++++++++---------
 tests/testthat/Rplots.pdf         |binary
 tests/testthat/test_expl_spline.R |  192 +++++++++++++++++++-------------------
 7 files changed, 154 insertions(+), 153 deletions(-)

More information about ICSsmoothing at CRAN
Permanent link


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