Title: Interface to 'NetCDF' Datasets
Description: An interface to the 'NetCDF' file formats designed by Unidata
for efficient storage of array-oriented scientific data and descriptions.
Most capabilities of 'NetCDF' version 4 are supported. Optional conversions
of time units are enabled by 'UDUNITS' version 2, also from Unidata.
Author: Pavel Michna [aut],
Milton Woods [aut, cre]
Maintainer: Milton Woods <miltonjwoods@gmail.com>
Diff between RNetCDF versions 2.6-1 dated 2022-06-27 and 2.6-2 dated 2023-01-16
DESCRIPTION | 8 +-- INSTALL | 4 - LICENSE | 2 MD5 | 104 +++++++++++++++++++++++++-------------------------- NEWS | 3 + R/RNetCDF.R | 2 configure | 18 ++++---- configure.ac | 2 man/00RNetCDF.Rd | 2 man/att.copy.nc.Rd | 4 - man/att.delete.nc.Rd | 2 man/att.get.nc.Rd | 2 man/att.inq.nc.Rd | 2 man/att.put.nc.Rd | 6 +- man/att.rename.nc.Rd | 2 man/close.nc.Rd | 2 man/create.nc.Rd | 18 ++++---- man/dim.def.nc.Rd | 4 - man/dim.inq.nc.Rd | 2 man/dim.rename.nc.Rd | 2 man/file.inq.nc.Rd | 4 - man/grp.def.nc.Rd | 10 ++-- man/grp.inq.nc.Rd | 6 +- man/grp.rename.nc.Rd | 8 +-- man/open.nc.Rd | 2 man/print.nc.Rd | 2 man/read.nc.Rd | 2 man/sync.nc.Rd | 2 man/type.def.nc.Rd | 30 +++++++------- man/type.inq.nc.Rd | 20 +++++---- man/utcal.nc.Rd | 6 +- man/utinvcal.nc.Rd | 2 man/var.def.nc.Rd | 23 +++++------ man/var.get.nc.Rd | 20 +++++---- man/var.inq.nc.Rd | 32 +++++++-------- man/var.par.nc.Rd | 4 - man/var.put.nc.Rd | 20 +++++---- man/var.rename.nc.Rd | 2 src/RNetCDF.h | 6 +- src/attribute.c | 4 - src/common.c | 4 - src/common.h | 4 - src/convert.c | 6 +- src/convert.h | 4 - src/dataset.c | 4 - src/dimension.c | 4 - src/group.c | 4 - src/init.c | 4 - src/type.c | 4 - src/udunits.c | 6 +- src/variable.c | 88 +++++++++++++++++++++++-------------------- tests/RNetCDF-test.R | 4 - tools/convert.m4 | 6 +- 53 files changed, 277 insertions(+), 261 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices. Includes functions to perform 2D convolutions, reorient and resize images/matrices, add image overlays, generate camera vignette effects, and add titles to images.
Author: Tyler Morgan-Wall [aut, cph, cre]
,
Sean Barrett [ctb, cph]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.7.3 dated 2022-10-22 and 0.9.1 dated 2023-01-16
rayimage-0.7.3/rayimage/R/utils-pipe.R |only rayimage-0.7.3/rayimage/man/pipe.Rd |only rayimage-0.9.1/rayimage/DESCRIPTION | 12 +-- rayimage-0.9.1/rayimage/MD5 | 66 ++++++++--------- rayimage-0.9.1/rayimage/NAMESPACE | 3 rayimage-0.9.1/rayimage/R/add_image_overlay.R | 17 ++-- rayimage-0.9.1/rayimage/R/add_title.R | 40 ++++++---- rayimage-0.9.1/rayimage/R/add_vignette.R | 21 ++--- rayimage-0.9.1/rayimage/R/generate_2d_disk.R | 12 ++- rayimage-0.9.1/rayimage/R/generate_2d_exponential.R | 14 ++- rayimage-0.9.1/rayimage/R/generate_2d_gaussian.R | 13 ++- rayimage-0.9.1/rayimage/R/make_vignette_overlay.R | 12 +-- rayimage-0.9.1/rayimage/R/plot_image.R | 48 ++++-------- rayimage-0.9.1/rayimage/R/plot_image_grid.R |only rayimage-0.9.1/rayimage/R/render_bokeh.R | 46 ++++++----- rayimage-0.9.1/rayimage/R/render_convolution.R | 34 +++----- rayimage-0.9.1/rayimage/R/render_convolution_fft.R | 33 +++----- rayimage-0.9.1/rayimage/R/render_distance.R | 7 + rayimage-0.9.1/rayimage/R/render_reorient.R | 27 ++---- rayimage-0.9.1/rayimage/R/render_resized.R | 27 +++--- rayimage-0.9.1/rayimage/R/run_documentation.R |only rayimage-0.9.1/rayimage/data/dragondepth.rda |binary rayimage-0.9.1/rayimage/man/add_image_overlay.Rd | 7 - rayimage-0.9.1/rayimage/man/add_title.Rd | 24 +++--- rayimage-0.9.1/rayimage/man/add_vignette.Rd | 17 +--- rayimage-0.9.1/rayimage/man/generate_2d_disk.Rd | 9 +- rayimage-0.9.1/rayimage/man/generate_2d_exponential.Rd | 14 ++- rayimage-0.9.1/rayimage/man/generate_2d_gaussian.Rd | 15 +++ rayimage-0.9.1/rayimage/man/plot_image.Rd | 3 rayimage-0.9.1/rayimage/man/plot_image_grid.Rd |only rayimage-0.9.1/rayimage/man/render_bokeh.Rd | 29 ++++--- rayimage-0.9.1/rayimage/man/render_boolean_distance.Rd | 7 + rayimage-0.9.1/rayimage/man/render_convolution.Rd | 34 +++----- rayimage-0.9.1/rayimage/man/render_convolution_fft.Rd | 33 +++----- rayimage-0.9.1/rayimage/man/render_reorient.Rd | 27 ++---- rayimage-0.9.1/rayimage/man/render_resized.Rd | 27 +++--- rayimage-0.9.1/rayimage/man/run_documentation.Rd |only 37 files changed, 341 insertions(+), 337 deletions(-)
Title: Discrete Time Simulation of Mosquito-Borne Pathogen Transmission
Description: Provides a framework based on S3 dispatch for constructing models
of mosquito-borne pathogen transmission which are constructed from submodels of various
components (i.e. immature and adult mosquitoes, human populations). A consistent mathematical
expression for the distribution of bites on hosts means that different models
(stochastic, deterministic, etc.) can be coherently incorporated and updated
over a discrete time step.
Author: Sean L. Wu [aut, cre] ,
David L. Smith [aut] ,
Sophie Libkind [ctb]
Maintainer: Sean L. Wu <slwood89@gmail.com>
Diff between MicroMoB versions 0.1.0 dated 2022-07-01 and 0.1.2 dated 2023-01-16
DESCRIPTION | 8 - MD5 | 60 +++++++++--- NAMESPACE | 22 ++++ NEWS.md | 11 ++ R/aquatic_BH_API.R |only R/aquatic_trace_API.R |only R/humans_SIP.R | 1 R/mosquito_RM.R | 10 +- R/mosquito_RM_API.R |only build/vignette.rds |binary inst/doc/Advanced.html | 124 +++++++++++++------------ inst/doc/BH_aqua.html | 126 +++++++++++++------------- inst/doc/BQ_mosquito.html | 126 +++++++++++++------------- inst/doc/Contributing.html | 14 +- inst/doc/MOI_human.html | 130 ++++++++++++++------------- inst/doc/MicroMoB.html | 14 +- inst/doc/RM_mosquito.html | 126 +++++++++++++------------- inst/doc/RM_transmission.html | 126 +++++++++++++------------- inst/doc/bloodmeal.html | 14 +- man/get_K_aqua_BH.Rd |only man/get_eip_mosquito_RM.Rd |only man/get_f_mosquito_RM.Rd |only man/get_kappa_mosquito_RM.Rd |only man/get_lambda_aqua_trace.Rd |only man/get_molt_aqua_BH.Rd |only man/get_nu_mosquito_RM.Rd |only man/get_p_mosquito_RM.Rd |only man/get_psi_mosquito_RM.Rd |only man/get_q_mosquito_RM.Rd |only man/get_surv_aqua_BH.Rd |only man/set_K_aqua_BH.Rd |only man/set_eip_mosquito_RM.Rd |only man/set_f_mosquito_RM.Rd |only man/set_kappa_mosquito_RM.Rd |only man/set_lambda_aqua_trace.Rd |only man/set_molt_aqua_BH.Rd |only man/set_nu_mosquito_RM.Rd |only man/set_p_mosquito_RM.Rd |only man/set_psi_mosquito_RM.Rd |only man/set_q_mosquito_RM.Rd |only man/set_surv_aqua_BH.Rd |only tests/testthat/test-api_mosquitoes_plumber.R | 6 + tests/testthat/test-aquatic_BH_API.R |only tests/testthat/test-aquatic_trace_API.R |only tests/testthat/test-mosquito_RM_API.R |only 45 files changed, 510 insertions(+), 408 deletions(-)
Title: Analysis of Continuous Glucose Monitor Data
Description: Reads in continuous glucose monitor data of many different formats, calculates a host of glycemic variability metrics, and plots glucose over time.
Author: Evan Olawsky [aut, cre],
Yuan Zhang [ctb],
Lynn Eberly [ctb]
Maintainer: Evan Olawsky <evanolawsky@gmail.com>
Diff between rGV versions 0.0.3 dated 2022-12-06 and 0.0.4 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++-- R/metrics.R | 3 +++ R/read_CGM.R | 4 ++-- tests/testthat/test_metric.R | 2 +- 6 files changed, 18 insertions(+), 14 deletions(-)
Title: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
Description: General purpose TIFF file I/O for R users. Currently the
only such package with read and write support for TIFF files with
floating point (real-numbered) pixels, and the only package that can
correctly import TIFF files that were saved from 'ImageJ' and write
TIFF files than can be correctly read by 'ImageJ'
<https://imagej.nih.gov/ij/>. Also supports text image I/O.
Author: Rory Nolan [aut, cre] ,
Kent Johnson [aut],
Simon Urbanek [ctb],
Sergi Padilla-Parra [ths] ,
Jeroen Ooms [rev, ctb] ,
Jon Clayden [rev]
Maintainer: Rory Nolan <rorynoolan@gmail.com>
Diff between ijtiff versions 2.2.9 dated 2022-11-06 and 2.3.0 dated 2023-01-16
DESCRIPTION | 15 - MD5 | 39 ++- NAMESPACE | 2 NEWS.md | 9 R/argument-checking.R | 50 ++-- R/class_constructors.R | 48 ++-- R/graphics.R | 22 -- R/ijtiff.R | 2 R/read.R | 56 ++--- R/text-io.R | 35 ++- R/utils.R | 209 ++++++++------------ R/write.R | 131 +++++++----- inst/doc/reading-and-writing-images.html | 133 ++++++------ inst/doc/text-images.html | 18 - inst/doc/the-imagej-problem.html | 117 +++++------ tests/testthat/_snaps/io.md |only tests/testthat/_snaps/linescan_to_stack-examples.md |only tests/testthat/_snaps/read_tags-examples.md |only tests/testthat/test-io.R | 159 +++------------ tests/testthat/test-linescan_to_stack-examples.R | 18 - tests/testthat/test-read_tags-examples.R | 8 tests/testthat/test-utils.R | 4 22 files changed, 492 insertions(+), 583 deletions(-)
Title: Fast and Robust Hierarchical Clustering with Noise Points
Detection
Description: A retake on the Genie algorithm
(Gagolewski, 2021 <DOI:10.1016/j.softx.2021.100722>) - a robust
hierarchical clustering method
(Gagolewski, Bartoszuk, Cena, 2016 <DOI:10.1016/j.ins.2016.05.003>).
Now faster and more memory efficient; determining the whole hierarchy
for datasets of 10M points in low dimensional Euclidean spaces or
100K points in high-dimensional ones takes only 1-2 minutes.
Allows clustering with respect to mutual reachability distances
so that it can act as a noise point detector or a robustified version of
'HDBSCAN*' (that is able to detect a predefined number of
clusters and hence it does not dependent on the somewhat
fragile 'eps' parameter).
The package also features an implementation of economic inequity indices
(the Gini, Bonferroni index), external cluster validity measures
(e.g., the adjusted asymmetric accuracy and partition similarity scores
such as the adjusted Rand, Fowlkes-Mallows, adjusted mutual information,
and pair sets indices),
and intern [...truncated...]
Author: Marek Gagolewski [aut, cre, cph]
,
Maciej Bartoszuk [ctb],
Anna Cena [ctb],
Peter M. Larsen [ctb]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between genieclust versions 1.1.0 dated 2022-09-05 and 1.1.3 dated 2023-01-16
genieclust-1.1.0/genieclust/man/cluster_validity_measures.Rd |only genieclust-1.1.0/genieclust/man/comparing_partitions.Rd |only genieclust-1.1.3/genieclust/DESCRIPTION | 8 genieclust-1.1.3/genieclust/MD5 | 92 ++-- genieclust-1.1.3/genieclust/NEWS | 87 ++-- genieclust-1.1.3/genieclust/R/RcppExports.R | 60 +- genieclust-1.1.3/genieclust/R/gclust.R | 12 genieclust-1.1.3/genieclust/R/genieclust-package.R | 2 genieclust-1.1.3/genieclust/R/mst.R | 12 genieclust-1.1.3/genieclust/man/cluster_validity.Rd |only genieclust-1.1.3/genieclust/man/compare_partitions.Rd |only genieclust-1.1.3/genieclust/man/gclust.Rd | 10 genieclust-1.1.3/genieclust/man/inequity.Rd | 3 genieclust-1.1.3/genieclust/man/mst.Rd | 10 genieclust-1.1.3/genieclust/src/c_argfuns.h | 22 - genieclust-1.1.3/genieclust/src/c_common.h | 11 genieclust-1.1.3/genieclust/src/c_compare_partitions.h | 185 ++++---- genieclust-1.1.3/genieclust/src/c_cvi.h | 76 +-- genieclust-1.1.3/genieclust/src/c_disjoint_sets.h | 18 genieclust-1.1.3/genieclust/src/c_distance.h | 98 ++-- genieclust-1.1.3/genieclust/src/c_genie.h | 206 +++++----- genieclust-1.1.3/genieclust/src/c_gini_disjoint_sets.h | 58 +- genieclust-1.1.3/genieclust/src/c_inequity.h | 14 genieclust-1.1.3/genieclust/src/c_int_dict.h | 72 +-- genieclust-1.1.3/genieclust/src/c_mst.h | 102 ++-- genieclust-1.1.3/genieclust/src/c_postprocess.h | 36 - genieclust-1.1.3/genieclust/src/c_preprocess.h | 16 genieclust-1.1.3/genieclust/src/c_scipy_rectangular_lsap.h | 66 +-- genieclust-1.1.3/genieclust/src/cvi.h | 26 - genieclust-1.1.3/genieclust/src/cvi_calinski_harabasz.h | 6 genieclust-1.1.3/genieclust/src/cvi_davies_bouldin.h | 4 genieclust-1.1.3/genieclust/src/cvi_dunnowa.h | 36 - genieclust-1.1.3/genieclust/src/cvi_generalized_dunn.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_delta.h | 16 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d1.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d2.h | 4 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d3.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d4.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d5.h | 20 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_lowercase_d6.h | 22 - genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_uppercase_d1.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_uppercase_d2.h | 8 genieclust-1.1.3/genieclust/src/cvi_generalized_dunn_uppercase_d3.h | 20 genieclust-1.1.3/genieclust/src/cvi_silhouette.h | 6 genieclust-1.1.3/genieclust/src/r_compare_partitions.cpp | 85 ++-- genieclust-1.1.3/genieclust/src/r_cvi.cpp | 82 +-- genieclust-1.1.3/genieclust/src/r_emst.cpp | 10 genieclust-1.1.3/genieclust/src/r_gclust.cpp | 102 ++-- genieclust-1.1.3/genieclust/src/r_inequity.cpp | 13 49 files changed, 920 insertions(+), 856 deletions(-)
Title: Toolbox for WELL Random Number Generators
Description: It is a dedicated package to WELL pseudo random generators,
which were introduced in Panneton et al. (2006), ``Improved Long-Period
Generators Based on Linear Recurrences Modulo 2'', see <doi:10.1145/1132973.1132974>.
But this package is not intended to be used directly, you are strongly __encouraged__
to use the 'randtoolbox' package, which depends on this package.
Author: C code by F. Panneton [aut], P. L'Ecuyer [aut], M. Matsumoto [aut]
and R port by Christophe Dutang [cre, aut], Petr Savicky [aut] <savicky@cs.cas.cz>
Maintainer: Christophe Dutang <dutangc@gmail.com>
Diff between rngWELL versions 0.10-8 dated 2022-11-05 and 0.10-9 dated 2023-01-16
rngWELL-0.10-8/rngWELL/src/Makevars |only rngWELL-0.10-9/rngWELL/DESCRIPTION | 6 rngWELL-0.10-9/rngWELL/MD5 | 17 rngWELL-0.10-9/rngWELL/configure | 804 +------------------------------- rngWELL-0.10-9/rngWELL/configure.ac | 343 ------------- rngWELL-0.10-9/rngWELL/inst/NEWS | 6 rngWELL-0.10-9/rngWELL/src/config.h | 22 rngWELL-0.10-9/rngWELL/src/config.h.in | 18 rngWELL-0.10-9/rngWELL/src/config.h.win | 14 rngWELL-0.10-9/rngWELL/src/version.c | 2 10 files changed, 85 insertions(+), 1147 deletions(-)
Title: Wrapper for SQL Server bcp Utility
Description: Provides functions to utilize a command line utility that does bulk inserts and exports from SQL Server databases.
Author: Thomas Roh [aut, cre]
Maintainer: Thomas Roh <thomas@roh.engineering>
Diff between bcputility versions 0.3.0 dated 2022-02-20 and 0.4.0 dated 2023-01-16
DESCRIPTION | 12 MD5 | 25 + NAMESPACE | 18 - NEWS.md | 43 ++ R/bcp.R | 730 +++++++++++++++++++++++++++++--------------- R/sysdata.rda |only README.md | 336 +++++++++++--------- man/SQLServerCLIVersions.Rd |only man/bcpExport.Rd | 121 +++---- man/bcpImport.Rd | 73 +--- man/createTable.Rd |only man/figures/benchmarks.png |binary man/makeConnectArgs.Rd |only man/mapDataTypes.Rd |only tests |only 15 files changed, 836 insertions(+), 522 deletions(-)
Title: A Modular Platform for Reproducible Modeling of Species Niches
and Distributions
Description: The 'shiny' application Wallace is a modular platform for
reproducible modeling of species niches and distributions. Wallace
guides users through a complete analysis, from the acquisition of species
occurrence and environmental data to visualizing model predictions on an
interactive map, thus bundling complex workflows into a single,
streamlined interface. An extensive vignette, which guides users through
most package functionality can be found on the package's GitHub Pages
website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.
Author: Jamie M. Kass [aut],
Gonzalo E. Pinilla-Buitrago [aut, cre],
Andrea Paz [aut],
Bethany A. Johnson [aut],
Valentina Grisales-Betancur [aut],
Dean Attali [aut],
Matthew E. Aiello-Lammens [aut],
Cory Merow [aut],
Mary E. Blair [aut],
Robert P. Anderson [...truncated...]
Maintainer: Gonzalo E. Pinilla-Buitrago <gpinillabuitrago@gradcenter.cuny.edu>
Diff between wallace versions 2.0.2 dated 2023-01-05 and 2.0.3 dated 2023-01-16
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 4 ++++ README.md | 4 ++-- inst/shiny/Rmd/text_about.Rmd | 2 +- inst/shiny/Rmd/text_intro_tab.Rmd | 2 +- inst/shiny/Rmd/userReport_intro.Rmd | 2 +- tests/testthat/test_occs_queryDb.R | 6 +++--- 8 files changed, 24 insertions(+), 20 deletions(-)
Title: Fast R and C++ Access to NIfTI Images
Description: Provides very fast read and write access to images stored in the
NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation
of in-memory image objects between compiled C and interpreted R code. Also
provides a simple image viewer, and a C/C++ API that can be used by other
packages. Not to be confused with 'RNiftyReg', which performs image
registration and applies spatial transformations.
Author: Jon Clayden [cre, aut] ,
Bob Cox [aut],
Mark Jenkinson [aut],
Matt Hall [ctb],
Rick Reynolds [ctb],
Kate Fissell [ctb],
Jean-loup Gailly [cph],
Mark Adler [cph]
Maintainer: Jon Clayden <code@clayden.org>
Diff between RNifti versions 1.4.3 dated 2022-11-07 and 1.4.4 dated 2023-01-16
RNifti-1.4.3/RNifti/inst/doxygen |only RNifti-1.4.4/RNifti/DESCRIPTION | 8 RNifti-1.4.4/RNifti/MD5 | 244 --------------------------- RNifti-1.4.4/RNifti/NEWS | 7 RNifti-1.4.4/RNifti/src/niftilib/nifti1_io.c | 5 RNifti-1.4.4/RNifti/src/znzlib/znzlib.c | 2 6 files changed, 21 insertions(+), 245 deletions(-)
Title: Fast Network Modularity and Roles Computation by Simulated
Annealing (Rgraph C Library Wrapper for R)
Description: Provides functions to compute the modularity and modularity-related roles in networks. It is a wrapper around the rgraph library (Guimera & Amaral, 2005, <doi:10.1038/nature03288>).
Author: Daniel B. Stouffer [cre, aut, ths] ,
Guilhem Doulcier [aut] ,
Roger Guimera [ctb]
Maintainer: Daniel B. Stouffer <daniel.stouffer@canterbury.ac.nz>
Diff between rnetcarto versions 0.2.5 dated 2022-05-11 and 0.2.6 dated 2023-01-16
rnetcarto-0.2.5/rnetcarto/src/rnetcarto-init.c |only rnetcarto-0.2.6/rnetcarto/DESCRIPTION | 8 rnetcarto-0.2.6/rnetcarto/MD5 | 16 rnetcarto-0.2.6/rnetcarto/NAMESPACE | 2 rnetcarto-0.2.6/rnetcarto/R/rnetcarto.R | 2 rnetcarto-0.2.6/rnetcarto/README.md | 2 rnetcarto-0.2.6/rnetcarto/configure | 1719 +++++++++------- rnetcarto-0.2.6/rnetcarto/configure.ac | 16 rnetcarto-0.2.6/rnetcarto/inst/doc/getting-started.html | 51 rnetcarto-0.2.6/rnetcarto/src/rnetcarto_init.c |only 10 files changed, 1049 insertions(+), 767 deletions(-)
Title: Data from all Seasons of Survivor (US) TV Series in Tidy Format
Description: Several datasets which detail the results and events of each season of Survivor. This includes
details on the cast, voting history, immunity and reward challenges, jury votes and viewers. This data is
useful for practicing data wrangling, graph analytics and analysing how each season of Survivor played out.
Includes 'ggplot2' scales and colour palettes for visualisation.
Author: Daniel Oehm [aut, cre],
Carly Levitz [ctb],
Dario Mavec [ctb]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between survivoR versions 2.0.4 dated 2022-12-17 and 2.0.7 dated 2023-01-16
DESCRIPTION | 11 ++-- MD5 | 42 ++++++++-------- NAMESPACE | 3 + NEWS.md | 6 ++ R/datasets.R | 6 +- R/helpers.R | 35 ++++++++++++- README.md | 118 ++++++++++++++++++++++----------------------- data/boot_mapping.rda |binary data/castaway_details.rda |binary data/castaways.rda |binary data/challenge_results.rda |binary data/season_palettes.rda |binary data/season_summary.rda |binary data/tribe_colours.rda |binary data/tribe_mapping.rda |binary data/viewers.rda |binary data/vote_history.rda |binary inst/version-git.txt |only man/check_version.Rd |only man/get_castaway_image.Rd | 2 man/season_summary.Rd | 2 man/viewers.Rd | 3 - man/vote_history.Rd | 1 23 files changed, 139 insertions(+), 90 deletions(-)
Title: Inference for Spatiotemporal Partially Observed Markov Processes
Description: Inference on panel data using spatiotemporal partially-observed Markov process (SpatPOMP) models. To do so, it relies on and extends a number of facilities that the 'pomp' package provides for inference on time series data using partially-observed Markov process (POMP) models. Implemented methods include filtering and inference methods in Park and Ionides (2020) <doi:10.1007/s11222-020-09957-3>, Rebeschini and van Handel (2015) <doi:10.1214/14-AAP1061>, Evensen and van Leeuwen (1996) <doi:10.1029/94JC00572> and Ionides et al. (2021) <doi:10.1080/01621459.2021.1974867>. Pre-print statistical software article: Asfaw et al. (2021) <arXiv:2101.01157>.
Author: Kidus Asfaw [aut],
Edward Ionides [cre, aut],
Aaron A. King [aut],
Allister Ho [ctb],
Joonha Park [ctb],
Jesse Wheeler [ctb],
Jifan Li [ctb]
Maintainer: Edward Ionides <ionides@umich.edu>
Diff between spatPomp versions 0.30.2.0 dated 2022-12-24 and 0.31.0.0 dated 2023-01-16
spatPomp-0.30.2.0/spatPomp/R/as_spatPomp.R |only spatPomp-0.30.2.0/spatPomp/R/rprocess_spec.R |only spatPomp-0.30.2.0/spatPomp/R/skeleton_spec.R |only spatPomp-0.30.2.0/spatPomp/README.md |only spatPomp-0.30.2.0/spatPomp/man/as_spatPomp.Rd |only spatPomp-0.30.2.0/spatPomp/tests/bm-01.png |only spatPomp-0.30.2.0/spatPomp/tests/bm-02.png |only spatPomp-0.30.2.0/spatPomp/tests/bm-03.png |only spatPomp-0.31.0.0/spatPomp/DESCRIPTION | 34 ++-- spatPomp-0.31.0.0/spatPomp/MD5 | 118 ++++++++--------- spatPomp-0.31.0.0/spatPomp/R/abf.R | 4 spatPomp-0.31.0.0/spatPomp/R/abfir.R | 3 spatPomp-0.31.0.0/spatPomp/R/bm.R | 2 spatPomp-0.31.0.0/spatPomp/R/bm2.R | 1 spatPomp-0.31.0.0/spatPomp/R/bpfilter.R | 3 spatPomp-0.31.0.0/spatPomp/R/enkf.R | 3 spatPomp-0.31.0.0/spatPomp/R/gbm.R | 6 spatPomp-0.31.0.0/spatPomp/R/girf.R | 3 spatPomp-0.31.0.0/spatPomp/R/he10.R | 45 ++++-- spatPomp-0.31.0.0/spatPomp/R/he10coordinates.R | 6 spatPomp-0.31.0.0/spatPomp/R/he10demography.R | 6 spatPomp-0.31.0.0/spatPomp/R/he10measles.R | 6 spatPomp-0.31.0.0/spatPomp/R/he10mle.R | 6 spatPomp-0.31.0.0/spatPomp/R/ibpf.R | 4 spatPomp-0.31.0.0/spatPomp/R/ienkf.R | 4 spatPomp-0.31.0.0/spatPomp/R/igirf.R | 6 spatPomp-0.31.0.0/spatPomp/R/iubf.R | 4 spatPomp-0.31.0.0/spatPomp/R/lorenz.R | 3 spatPomp-0.31.0.0/spatPomp/R/measles.R | 43 ++++-- spatPomp-0.31.0.0/spatPomp/R/spatPomp.R | 16 +- spatPomp-0.31.0.0/spatPomp/man/abf.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/abfir.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/bm.Rd | 6 spatPomp-0.31.0.0/spatPomp/man/bm2.Rd | 9 + spatPomp-0.31.0.0/spatPomp/man/bpfilter.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/city_data_UK.Rd | 1 spatPomp-0.31.0.0/spatPomp/man/enkf.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/gbm.Rd |only spatPomp-0.31.0.0/spatPomp/man/girf.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/he10.Rd | 85 ++++-------- spatPomp-0.31.0.0/spatPomp/man/he10coordinates.Rd |only spatPomp-0.31.0.0/spatPomp/man/he10demography.Rd |only spatPomp-0.31.0.0/spatPomp/man/he10measles.Rd |only spatPomp-0.31.0.0/spatPomp/man/he10mle.Rd |only spatPomp-0.31.0.0/spatPomp/man/ibpf.Rd | 12 - spatPomp-0.31.0.0/spatPomp/man/ienkf.Rd | 16 -- spatPomp-0.31.0.0/spatPomp/man/igirf.Rd | 18 -- spatPomp-0.31.0.0/spatPomp/man/iubf.Rd | 16 -- spatPomp-0.31.0.0/spatPomp/man/lorenz.Rd | 40 +---- spatPomp-0.31.0.0/spatPomp/man/macros/cite.Rd | 2 spatPomp-0.31.0.0/spatPomp/man/measles.Rd | 39 +++++ spatPomp-0.31.0.0/spatPomp/man/measlesUK.Rd | 3 spatPomp-0.31.0.0/spatPomp/tests/bm.R | 28 +++- spatPomp-0.31.0.0/spatPomp/tests/bm.Rout.save | 61 ++++++++ spatPomp-0.31.0.0/spatPomp/tests/bm2.R | 17 +- spatPomp-0.31.0.0/spatPomp/tests/bm2.Rout.save | 28 +++- spatPomp-0.31.0.0/spatPomp/tests/gbm.R | 2 spatPomp-0.31.0.0/spatPomp/tests/gbm.Rout.save | 12 + spatPomp-0.31.0.0/spatPomp/tests/he10.R | 2 spatPomp-0.31.0.0/spatPomp/tests/he10.Rout.save | 10 + spatPomp-0.31.0.0/spatPomp/tests/iter_filter.R | 2 spatPomp-0.31.0.0/spatPomp/tests/iter_filter.Rout.save | 12 + spatPomp-0.31.0.0/spatPomp/tests/lorenz.R | 2 spatPomp-0.31.0.0/spatPomp/tests/lorenz.Rout.save | 12 + spatPomp-0.31.0.0/spatPomp/tests/measles.R | 13 + spatPomp-0.31.0.0/spatPomp/tests/measles.Rout.save | 35 ++++- spatPomp-0.31.0.0/spatPomp/tests/spatPomp.R |only 67 files changed, 520 insertions(+), 349 deletions(-)
Title: An R Interface to the Onigmo Regular Expression Library
Description: Provides an alternative to R's built-in functionality for handling
regular expressions, based on the Onigmo library. Offers first-class
compiled regex objects, partial matching and function-based substitutions,
amongst other features.
Author: Jon Clayden, based on Onigmo by K. Kosako and K. Takata
Maintainer: Jon Clayden <code@clayden.org>
Diff between ore versions 1.7.2.1 dated 2022-10-31 and 1.7.3.1 dated 2023-01-16
DESCRIPTION | 8 ++++---- LICENCE | 2 +- MD5 | 14 +++++++------- NEWS | 17 +++++++++++++++++ R/zzz.R | 4 ++-- configure | 9 +++++++++ configure.ac | 9 +++++++++ src/print.c | 9 +++------ 8 files changed, 52 insertions(+), 20 deletions(-)
Title: Manipulation of Linear Systems of (in)Equalities
Description: Variable elimination (Gaussian elimination, Fourier-Motzkin elimination),
Moore-Penrose pseudoinverse, reduction to reduced row echelon form, value substitution,
projecting a vector on the convex polytope described by a system of (in)equations,
simplify systems by removing spurious columns and rows and collapse implied equalities,
test if a matrix is totally unimodular, compute variable ranges implied by linear
(in)equalities.
Author: Mark van der Loo [aut, cre],
Edwin de Jonge [aut]
Maintainer: Mark van der Loo <mark.vanderloo@gmail.com>
Diff between lintools versions 0.1.6 dated 2022-06-16 and 0.1.7 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 13 +++++++------ NEWS | 6 ++++++ R/unimodularity.R | 2 +- build/vignette.rds |binary inst/doc/project.html | 6 +++--- inst/tinytest/test_gh_issue_04.R |only src/R_sparseConstraints.c | 11 ++++++----- 8 files changed, 27 insertions(+), 19 deletions(-)
Title: Reproduce Statistical Analyses and Meta-Analyses
Description: Includes data analysis functions (e.g., to calculate effect
sizes and 95% Confidence Intervals (CI) on Standardised Effect Sizes
(d) for AB/BA cross-over repeated-measures experimental designs), data
presentation functions (e.g., density curve overlaid on histogram),
and the data sets analyzed in different research papers in software
engineering (e.g., related to software defect prediction or multi-site
experiment concerning the extent to which structured abstracts were
clearer and more complete than conventional abstracts) to streamline
reproducible research in software engineering.
Author: Lech Madeyski [cre, aut, ctb] ,
Barbara Kitchenham [ctb] ,
Tomasz Lewowski [ctb] ,
Marian Jureczko [ctb] ,
David Budgen [ctb] ,
Pearl Brereton [ctb] ,
Jacky Keung [ctb] ,
Stuart Charters [ctb] ,
Shirley Gibbs [ctb] ,
Amnart Pohthong [ctb] ,
Giuseppe [...truncated...]
Maintainer: Lech Madeyski <lech.madeyski@gmail.com>
Diff between reproducer versions 0.4.2 dated 2021-02-23 and 0.5.0 dated 2023-01-16
reproducer-0.4.2/reproducer/man/CalculateTheoreticalEffectSizes.Rd |only reproducer-0.4.2/reproducer/man/Cliffd.Rd |only reproducer-0.4.2/reproducer/man/Kendalltaupb.Rd |only reproducer-0.4.2/reproducer/man/NP2GroupMetaAnalysisSimulation.Rd |only reproducer-0.4.2/reproducer/man/NP4GroupMetaAnalysisSimulation.Rd |only reproducer-0.5.0/reproducer/DESCRIPTION | 77 reproducer-0.5.0/reproducer/MD5 | 213 reproducer-0.5.0/reproducer/NAMESPACE | 23 reproducer-0.5.0/reproducer/NEWS.md | 34 reproducer-0.5.0/reproducer/R/MadeyskiKitchenhamMetaAnalysis.R | 1114 - reproducer-0.5.0/reproducer/R/MetaAnalysisForFamiliesOfExperimentsSR.R | 1999 +-- reproducer-0.5.0/reproducer/R/NPSimulation.R | 5917 +++++----- reproducer-0.5.0/reproducer/R/data.R | 134 reproducer-0.5.0/reproducer/R/github.R | 428 reproducer-0.5.0/reproducer/R/rPaperData.R | 239 reproducer-0.5.0/reproducer/R/rPaperFunctions.R | 1079 - reproducer-0.5.0/reproducer/R/reproducer.R | 113 reproducer-0.5.0/reproducer/README.md | 2 reproducer-0.5.0/reproducer/man/AnalyseResiduals.Rd |only reproducer-0.5.0/reproducer/man/Calc4GroupNPStats.Rd | 77 reproducer-0.5.0/reproducer/man/CalculateLevel2ExperimentRData.Rd | 37 reproducer-0.5.0/reproducer/man/CalculateRLevel1.Rd | 33 reproducer-0.5.0/reproducer/man/CatchError.Rd |only reproducer-0.5.0/reproducer/man/Ciolkowski09ESEM.MetaAnalysis.PBRvsCBRorAR.Rd | 7 reproducer-0.5.0/reproducer/man/Cliffd.test.Rd |only reproducer-0.5.0/reproducer/man/ConstructLevel1ExperimentRData.Rd | 34 reproducer-0.5.0/reproducer/man/ExtractExperimentData.Rd | 25 reproducer-0.5.0/reproducer/man/ExtractGroupSizeData.Rd | 62 reproducer-0.5.0/reproducer/man/ExtractMAStatistics.Rd | 60 reproducer-0.5.0/reproducer/man/ExtractSummaryStatisticsRandomizedExp.Rd | 32 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Abrahao13TSE.Rd | 37 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Gravino15JVLC.Rd | 31 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Madeyski10.Rd | 25 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Reggio15SSM.Rd | 33 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Ricca10TSE.Rd | 38 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Ricca14TOSEM.Rd | 26 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Romano18ESEM.Rd | 35 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14EASE.Rd | 35 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14JVLC.Rd | 29 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello14TOSEM.Rd | 33 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello15EMSE.Rd | 28 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Scanniello17TOSEM.Rd | 34 reproducer-0.5.0/reproducer/man/KitchenhamEtAl.CorrelationsAmongParticipants.Torchiano17JVLC.Rd | 36 reproducer-0.5.0/reproducer/man/KitchenhamMadeyski.SimulatedCrossoverDataSets.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBrereton.ABBAReportedEffectSizes.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBrereton.DocData.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBrereton.ReportedEffectSizes.Rd | 10 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.COCOMO.Rd | 4 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.DiffInDiffData.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.FINNISH.Rd | 4 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.PolishData.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.PolishSubjects.Rd | 2 reproducer-0.5.0/reproducer/man/KitchenhamMadeyskiBudgen16.SubjectData.Rd | 6 reproducer-0.5.0/reproducer/man/LaplaceDist.Rd | 10 reproducer-0.5.0/reproducer/man/Madeyski15EISEJ.OpenProjects.Rd | 2 reproducer-0.5.0/reproducer/man/Madeyski15EISEJ.PropProjects.Rd | 2 reproducer-0.5.0/reproducer/man/Madeyski15EISEJ.StudProjects.Rd | 2 reproducer-0.5.0/reproducer/man/Madeyski15SQJ.NDC.Rd | 6 reproducer-0.5.0/reproducer/man/MadeyskiKitchenham.EUBASdata.Rd | 4 reproducer-0.5.0/reproducer/man/MadeyskiKitchenham.MetaAnalysis.PBRvsCBRorAR.Rd | 7 reproducer-0.5.0/reproducer/man/MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20190324.Rd | 28 reproducer-0.5.0/reproducer/man/MadeyskiLewowski.IndustryRelevantGitHubJavaProjects20191022.Rd | 32 reproducer-0.5.0/reproducer/man/MetaAnalysisSimulations.Rd | 154 reproducer-0.5.0/reproducer/man/NP2GMetaAnalysisSimulation.Rd |only reproducer-0.5.0/reproducer/man/NP4GMetaAnalysisSimulation.Rd |only reproducer-0.5.0/reproducer/man/PHat.test.Rd |only reproducer-0.5.0/reproducer/man/PrepareForMetaAnalysisGtoR.Rd | 4 reproducer-0.5.0/reproducer/man/RandomExperimentSimulations.Rd | 114 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Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support "Summary and Analysis of
Extension Program Evaluation in R" and "An R
Companion for the Handbook of Biological Statistics".
Vignettes are available at <http://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.4.18 dated 2022-08-06 and 2.4.21 dated 2023-01-16
DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/efronRSquared.r | 2 +- R/groupwiseGeometric.r | 6 ++++-- R/groupwiseHuber.r | 9 +++++---- R/mangiaficoD.r | 8 ++++++-- R/oneSampleDominance.r | 2 +- R/percentileTest.r | 6 +++++- man/efronRSquared.Rd | 2 +- man/groupwiseGeometric.Rd | 6 ++++-- man/groupwiseHuber.Rd | 3 +++ man/mangiaficoD.Rd | 6 +++++- man/oneSampleDominance.Rd | 2 +- man/percentileTest.Rd | 6 +++++- 14 files changed, 59 insertions(+), 35 deletions(-)
Title: Ensemble Platform for Species Distribution Modeling
Description: Functions for species distribution modeling, calibration and evaluation,
ensemble of models, ensemble forecasting and visualization. The package permits to run
consistently up to 10 single models on a presence/absences (resp presences/pseudo-absences)
dataset and to combine them in ensemble models and ensemble projections. Some bench of other
evaluation and visualisation tools are also available within the package.
Author: Wilfried Thuiller [aut],
Damien Georges [aut],
Maya Gueguen [aut, cre],
Robin Engler [aut],
Frank Breiner [aut],
Bruno Lafourcade [aut],
Remi Patin [aut]
Maintainer: Maya Gueguen <maya.gueguen@univ-grenoble-alpes.fr>
Diff between biomod2 versions 4.1-2 dated 2022-10-25 and 4.2-2 dated 2023-01-16
biomod2-4.1-2/biomod2/inst/HasBeenCustom.txt |only biomod2-4.1-2/biomod2/inst/external |only biomod2-4.2-2/biomod2/DESCRIPTION | 23 biomod2-4.2-2/biomod2/MD5 | 230 - biomod2-4.2-2/biomod2/NAMESPACE | 90 biomod2-4.2-2/biomod2/R/BIOMOD_CrossValidation.R | 124 biomod2-4.2-2/biomod2/R/BIOMOD_EnsembleForecasting.R | 477 +- biomod2-4.2-2/biomod2/R/BIOMOD_EnsembleModeling.R | 1144 +++--- biomod2-4.2-2/biomod2/R/BIOMOD_FormatingData.R | 486 +- biomod2-4.2-2/biomod2/R/BIOMOD_LoadModels.R | 171 biomod2-4.2-2/biomod2/R/BIOMOD_Modeling.R | 404 -- biomod2-4.2-2/biomod2/R/BIOMOD_ModelingOptions.R | 261 - biomod2-4.2-2/biomod2/R/BIOMOD_PresenceOnly.R | 317 + biomod2-4.2-2/biomod2/R/BIOMOD_Projection.R | 516 +- biomod2-4.2-2/biomod2/R/BIOMOD_RangeSize.R | 329 - biomod2-4.2-2/biomod2/R/BIOMOD_Tuning.R | 124 biomod2-4.2-2/biomod2/R/biomod2-package.R | 2 biomod2-4.2-2/biomod2/R/biomod2_classes_1.R | 1776 ++++++---- biomod2-4.2-2/biomod2/R/biomod2_classes_2.R | 109 biomod2-4.2-2/biomod2/R/biomod2_classes_3.R | 892 ++--- biomod2-4.2-2/biomod2/R/biomod2_classes_4.R | 473 +- biomod2-4.2-2/biomod2/R/biomod2_classes_5.R | 280 - biomod2-4.2-2/biomod2/R/biomod2_data.R |only biomod2-4.2-2/biomod2/R/biomod2_globalVariables.R | 76 biomod2-4.2-2/biomod2/R/biomod2_internal.R | 755 ++-- biomod2-4.2-2/biomod2/R/bm_BinaryTransformation.R | 181 - biomod2-4.2-2/biomod2/R/bm_CVnnet.R | 12 biomod2-4.2-2/biomod2/R/bm_FindOptimStat.R | 12 biomod2-4.2-2/biomod2/R/bm_MakeFormula.R | 30 biomod2-4.2-2/biomod2/R/bm_PlotEvalBoxplot.R | 57 biomod2-4.2-2/biomod2/R/bm_PlotEvalMean.R | 67 biomod2-4.2-2/biomod2/R/bm_PlotRangeSize.R | 132 biomod2-4.2-2/biomod2/R/bm_PlotResponseCurves.R | 136 biomod2-4.2-2/biomod2/R/bm_PlotVarImpBoxplot.R | 54 biomod2-4.2-2/biomod2/R/bm_PseudoAbsences.R | 257 - biomod2-4.2-2/biomod2/R/bm_RunModelsLoop.R | 393 +- biomod2-4.2-2/biomod2/R/bm_SRE.R | 189 - biomod2-4.2-2/biomod2/R/bm_SampleBinaryVector.R | 10 biomod2-4.2-2/biomod2/R/bm_SampleFactorLevels.R | 78 biomod2-4.2-2/biomod2/R/bm_VariablesImportance.R | 41 biomod2-4.2-2/biomod2/README.md | 20 biomod2-4.2-2/biomod2/build/vignette.rds |binary biomod2-4.2-2/biomod2/data |only biomod2-4.2-2/biomod2/inst/doc/examples_1_mainFunctions.Rmd | 19 biomod2-4.2-2/biomod2/inst/doc/examples_1_mainFunctions.html | 209 - biomod2-4.2-2/biomod2/inst/doc/examples_2_secundaryFunctions.Rmd | 17 biomod2-4.2-2/biomod2/inst/doc/examples_2_secundaryFunctions.html | 154 biomod2-4.2-2/biomod2/inst/doc/news.Rmd | 135 biomod2-4.2-2/biomod2/inst/doc/news.html | 257 - biomod2-4.2-2/biomod2/inst/doc/vignette_pseudoAbsences.html | 43 biomod2-4.2-2/biomod2/inst/doc/vignette_variability.html | 61 biomod2-4.2-2/biomod2/inst/doc/vignette_videos.html | 15 biomod2-4.2-2/biomod2/man/BIOMOD.ensemble.models.out.Rd | 35 biomod2-4.2-2/biomod2/man/BIOMOD.formated.data.PA.Rd | 99 biomod2-4.2-2/biomod2/man/BIOMOD.formated.data.Rd | 113 biomod2-4.2-2/biomod2/man/BIOMOD.models.options.Rd | 4 biomod2-4.2-2/biomod2/man/BIOMOD.models.out.Rd | 20 biomod2-4.2-2/biomod2/man/BIOMOD.projection.out.Rd | 53 biomod2-4.2-2/biomod2/man/BIOMOD.stored.data.Rd | 8 biomod2-4.2-2/biomod2/man/BIOMOD_CrossValidation.Rd | 40 biomod2-4.2-2/biomod2/man/BIOMOD_EnsembleForecasting.Rd | 60 biomod2-4.2-2/biomod2/man/BIOMOD_EnsembleModeling.Rd | 138 biomod2-4.2-2/biomod2/man/BIOMOD_FormatingData.Rd | 121 biomod2-4.2-2/biomod2/man/BIOMOD_LoadModels.Rd | 84 biomod2-4.2-2/biomod2/man/BIOMOD_Modeling.Rd | 59 biomod2-4.2-2/biomod2/man/BIOMOD_ModelingOptions.Rd | 152 biomod2-4.2-2/biomod2/man/BIOMOD_PresenceOnly.Rd | 38 biomod2-4.2-2/biomod2/man/BIOMOD_Projection.Rd | 53 biomod2-4.2-2/biomod2/man/BIOMOD_RangeSize.Rd | 156 biomod2-4.2-2/biomod2/man/BIOMOD_Tuning.Rd | 38 biomod2-4.2-2/biomod2/man/DataSpecies.Rd |only biomod2-4.2-2/biomod2/man/bioclim_current.Rd |only biomod2-4.2-2/biomod2/man/bioclim_future.Rd |only biomod2-4.2-2/biomod2/man/biomod2_ensemble_model.Rd | 4 biomod2-4.2-2/biomod2/man/biomod2_model.Rd | 18 biomod2-4.2-2/biomod2/man/bm_BinaryTransformation.Rd | 36 biomod2-4.2-2/biomod2/man/bm_CVnnet.Rd | 8 biomod2-4.2-2/biomod2/man/bm_FindOptimStat.Rd | 8 biomod2-4.2-2/biomod2/man/bm_MakeFormula.Rd | 20 biomod2-4.2-2/biomod2/man/bm_PlotEvalBoxplot.Rd | 29 biomod2-4.2-2/biomod2/man/bm_PlotEvalMean.Rd | 23 biomod2-4.2-2/biomod2/man/bm_PlotRangeSize.Rd | 57 biomod2-4.2-2/biomod2/man/bm_PlotResponseCurves.Rd | 48 biomod2-4.2-2/biomod2/man/bm_PlotVarImpBoxplot.Rd | 23 biomod2-4.2-2/biomod2/man/bm_PseudoAbsences.Rd | 34 biomod2-4.2-2/biomod2/man/bm_RunModelsLoop.Rd | 4 biomod2-4.2-2/biomod2/man/bm_SRE.Rd | 55 biomod2-4.2-2/biomod2/man/bm_SampleBinaryVector.Rd | 4 biomod2-4.2-2/biomod2/man/bm_SampleFactorLevels.Rd | 25 biomod2-4.2-2/biomod2/man/bm_VariablesImportance.Rd | 14 biomod2-4.2-2/biomod2/man/check_duplicated_cells.Rd |only biomod2-4.2-2/biomod2/man/dot-categorical2numeric.Rd |only biomod2-4.2-2/biomod2/man/dot-check_bytes_format.Rd |only biomod2-4.2-2/biomod2/man/dot-get_categorical_names.Rd |only biomod2-4.2-2/biomod2/man/dot-transform_model.as.col.Rd |only biomod2-4.2-2/biomod2/man/getters.out.Rd | 181 - biomod2-4.2-2/biomod2/man/load_stored_object.Rd | 12 biomod2-4.2-2/biomod2/man/plot.Rd |only biomod2-4.2-2/biomod2/man/predict.bm.Rd | 3 biomod2-4.2-2/biomod2/man/predict.em.Rd | 2 biomod2-4.2-2/biomod2/man/predict2.bm.Rd | 104 biomod2-4.2-2/biomod2/man/predict2.em.Rd | 68 biomod2-4.2-2/biomod2/man/rast.has.values.Rd |only biomod2-4.2-2/biomod2/man/summary.Rd |only biomod2-4.2-2/biomod2/vignettes/examples_1_mainFunctions.Rmd | 19 biomod2-4.2-2/biomod2/vignettes/examples_2_secundaryFunctions.Rmd | 17 biomod2-4.2-2/biomod2/vignettes/news.Rmd | 135 107 files changed, 7977 insertions(+), 5883 deletions(-)
Title: Explore Data with Plots and Tables
Description: Provides modular functions and applications for quickly generating
plots and tables. Each modular function opens a graphical user interface
providing the user with options to create and customise plots and tables.
Author: Joe Chelladurai [aut, cre]
Maintainer: Joe Chelladurai <joe.chelladurai@outlook.com>
Diff between starry versions 0.1.1 dated 2022-10-17 and 0.1.2 dated 2023-01-16
starry-0.1.1/starry/R/plot_boxplot.R |only starry-0.1.1/starry/man/plot_boxplot.Rd |only starry-0.1.2/starry/DESCRIPTION | 11 + starry-0.1.2/starry/MD5 | 36 ++++- starry-0.1.2/starry/NAMESPACE | 52 +++++--- starry-0.1.2/starry/R/plot_bar.R |only starry-0.1.2/starry/R/plot_box.R |only starry-0.1.2/starry/R/plot_density.R |only starry-0.1.2/starry/R/plot_histogram.R |only starry-0.1.2/starry/R/plot_line.R |only starry-0.1.2/starry/R/plot_scatter.R | 77 +++++++++--- starry-0.1.2/starry/R/stat_anova.R |only starry-0.1.2/starry/R/stat_correlation.R |only starry-0.1.2/starry/R/stat_frequency.R | 135 ++++++++++++++++++---- starry-0.1.2/starry/R/stat_regression_linear.R |only starry-0.1.2/starry/R/stat_ttest.R |only starry-0.1.2/starry/R/utils.R |only starry-0.1.2/starry/README.md |only starry-0.1.2/starry/man/pipe.Rd | 40 +++--- starry-0.1.2/starry/man/plot_bar.Rd |only starry-0.1.2/starry/man/plot_box.Rd |only starry-0.1.2/starry/man/plot_density.Rd |only starry-0.1.2/starry/man/plot_histogram.Rd |only starry-0.1.2/starry/man/plot_line.Rd |only starry-0.1.2/starry/man/plot_scatter.Rd | 87 ++++++++++---- starry-0.1.2/starry/man/stat_anova.Rd |only starry-0.1.2/starry/man/stat_correlation.Rd |only starry-0.1.2/starry/man/stat_frequency.Rd | 50 ++++---- starry-0.1.2/starry/man/stat_regression_linear.Rd |only starry-0.1.2/starry/man/stat_ttest.Rd |only 30 files changed, 355 insertions(+), 133 deletions(-)
Title: Spatial Sampling Design and Analysis
Description: A design-based approach to statistical inference, with a focus on spatial data. Spatially balanced samples are selected using the Generalized Random Tessellation Stratified (GRTS) algorithm. The GRTS algorithm can be applied to finite resources (point geometries) and infinite resources (linear / linestring and areal / polygon geometries) and flexibly accommodates a diverse set of sampling design features, including stratification, unequal inclusion probabilities, proportional (to size) inclusion probabilities, legacy (historical) sites, a minimum distance between sites, and two options for replacement sites (reverse hierarchical order and nearest neighbor). Data are analyzed using a wide range of analysis functions that perform categorical variable analysis, continuous variable analysis, attributable risk analysis, risk difference analysis, relative risk analysis, change analysis, and trend analysis. spsurvey can also be used to summarize objects, visualize objects, select samples that [...truncated...]
Author: Michael Dumelle [aut, cre] ,
Tom Kincaid [aut],
Tony Olsen [aut],
Marc Weber [aut],
Don Stevens [ctb],
Denis White [ctb]
Maintainer: Michael Dumelle <Dumelle.Michael@epa.gov>
Diff between spsurvey versions 5.4.0 dated 2022-11-22 and 5.4.1 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 6 ++++++ README.md | 20 ++++++++++++-------- inst/CITATION | 35 ++++++++++++++++++++++++----------- inst/doc/start-here.html | 22 +++++++++++++--------- 6 files changed, 64 insertions(+), 37 deletions(-)
Title: R Interface to the 'Yacas' Computer Algebra System
Description: Interface to the 'yacas' computer algebra system (<http://www.yacas.org/>).
Author: Mikkel Meyer Andersen [aut, cre, cph],
Rob Goedman [aut, cph],
Gabor Grothendieck [aut, cph],
Soeren Hoejsgaard [aut, cph],
Grzegorz Mazur [aut, cph],
Ayal Pinkus [aut, cph],
Nemanja Trifunovic [cph] )
Maintainer: Mikkel Meyer Andersen <mikl@math.aau.dk>
Diff between Ryacas versions 1.1.4 dated 2023-01-12 and 1.1.5 dated 2023-01-16
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- inst/NEWS | 4 ++++ inst/doc/arbitrary-precision.html | 4 ++-- inst/doc/getting-started.html | 4 ++-- inst/doc/high-level.html | 10 +++++----- inst/doc/latent-variable-model.html | 4 ++-- inst/doc/low-level.html | 6 +++--- inst/doc/ssm-matrix.html | 4 ++-- inst/doc/yacas-rules.html | 6 +++--- src/yacas/src/lispenvironment.cpp | 2 +- 11 files changed, 37 insertions(+), 33 deletions(-)
Title: Common Fragmentation and Connectivity Indices for Riverscapes
Description: Indices for assessing riverscape fragmentation, including the Dendritic Connectivity Index, the Population Connectivity Index, the River Fragmentation Index, the Probability of Connectivity, and the Integral Index of connectivity. For a review, see Jumani et al. (2020) <doi:10.1088/1748-9326/abcb37> and Baldan et al. (2022) <doi:10.1016/j.envsoft.2022.105470> Functions to calculate temporal indices improvement when fragmentation due to barriers is reduced are also included.
Author: Damiano Baldan [aut, cre] ,
David Cunillera-Montcusi [ctb]
,
Andrea Funk [ctb]
Maintainer: Damiano Baldan <damiano.baldan91@gmail.com>
Diff between riverconn versions 0.3.22 dated 2022-08-06 and 0.3.25 dated 2023-01-16
DESCRIPTION | 12 - MD5 | 34 +- NAMESPACE | 1 R/B_ij_fun.R | 53 +++- R/d_index_calculation.R | 7 R/index_calculation.R | 34 ++ R/inner_d_index_calculation.R | 18 + R/inner_t_index_calculation.R | 16 - R/t_index_calculation.R | 8 README.md | 12 + build/vignette.rds |binary inst/doc/Tutorial.html | 454 ++++++++++----------------------------- man/B_ij_fun.Rd | 20 + man/d_index_calculation.Rd | 5 man/index_calculation.Rd | 29 ++ man/inner_d_index_calculation.Rd | 3 man/inner_t_index_calculation.Rd | 5 man/t_index_calculation.Rd | 3 18 files changed, 322 insertions(+), 392 deletions(-)
Title: User-Friendly R Package for Supervised Machine Learning
Pipelines
Description: An interface to build machine learning models for
classification and regression problems. 'mikropml' implements the ML
pipeline described by Topçuoğlu et al. (2020)
<doi:10.1128/mBio.00434-20> with reasonable default options for data
preprocessing, hyperparameter tuning, cross-validation, testing, model
evaluation, and interpretation steps. See the website
<https://www.schlosslab.org/mikropml/> for more information,
documentation, and examples.
Author: Beguem Topcuoğlu [aut] ,
Zena Lapp [aut] ,
Kelly Sovacool [aut, cre] ,
Evan Snitkin [aut] ,
Jenna Wiens [aut] ,
Patrick Schloss [aut] ,
Nick Lesniak [ctb] ,
Courtney Armour [ctb] ,
Sarah Lucas [ctb]
Maintainer: Kelly Sovacool <sovacool@umich.edu>
Diff between mikropml versions 1.4.0 dated 2022-10-16 and 1.5.0 dated 2023-01-16
mikropml-1.4.0/mikropml/R/performance_metrics.R |only mikropml-1.4.0/mikropml/R/preprocess_data.R |only mikropml-1.4.0/mikropml/R/train_model.R |only mikropml-1.4.0/mikropml/tests/testthat/test-performance_metrics.R |only mikropml-1.4.0/mikropml/tests/testthat/test-preprocess_data.R |only mikropml-1.4.0/mikropml/tests/testthat/test-train_model.R |only mikropml-1.5.0/mikropml/DESCRIPTION | 8 mikropml-1.5.0/mikropml/MD5 | 110 +- mikropml-1.5.0/mikropml/NAMESPACE | 6 mikropml-1.5.0/mikropml/NEWS.md | 10 mikropml-1.5.0/mikropml/R/checks.R | 18 mikropml-1.5.0/mikropml/R/corr_feats.R | 9 mikropml-1.5.0/mikropml/R/cross_val.R | 9 mikropml-1.5.0/mikropml/R/data.R | 5 mikropml-1.5.0/mikropml/R/feature_importance.R | 6 mikropml-1.5.0/mikropml/R/hyperparameters.R | 1 mikropml-1.5.0/mikropml/R/performance.R |only mikropml-1.5.0/mikropml/R/plot.R | 117 +++ mikropml-1.5.0/mikropml/R/preprocess.R |only mikropml-1.5.0/mikropml/R/reexports.R |only mikropml-1.5.0/mikropml/R/run_ml.R | 4 mikropml-1.5.0/mikropml/R/train.R |only mikropml-1.5.0/mikropml/R/utils.R | 41 - mikropml-1.5.0/mikropml/README.md | 50 - mikropml-1.5.0/mikropml/build/partial.rdb |binary mikropml-1.5.0/mikropml/build/vignette.rds |binary mikropml-1.5.0/mikropml/data/otu_data_preproc.rda |only mikropml-1.5.0/mikropml/inst/doc/introduction.R | 193 ++--- mikropml-1.5.0/mikropml/inst/doc/introduction.Rmd | 204 +++-- mikropml-1.5.0/mikropml/inst/doc/introduction.html | 367 +++++----- mikropml-1.5.0/mikropml/inst/doc/paper.R | 4 mikropml-1.5.0/mikropml/inst/doc/paper.Rmd | 4 mikropml-1.5.0/mikropml/man/calc_baseline_precision.Rd |only mikropml-1.5.0/mikropml/man/calc_mean_perf.Rd |only mikropml-1.5.0/mikropml/man/calc_perf_metrics.Rd | 2 mikropml-1.5.0/mikropml/man/get_caret_processed_df.Rd | 2 mikropml-1.5.0/mikropml/man/get_feature_importance.Rd | 3 mikropml-1.5.0/mikropml/man/get_outcome_type.Rd | 2 mikropml-1.5.0/mikropml/man/get_perf_metric_fn.Rd | 2 mikropml-1.5.0/mikropml/man/get_perf_metric_name.Rd | 2 mikropml-1.5.0/mikropml/man/get_performance_tbl.Rd | 6 mikropml-1.5.0/mikropml/man/otu_data_preproc.Rd |only mikropml-1.5.0/mikropml/man/plot_curves.Rd |only mikropml-1.5.0/mikropml/man/preprocess_data.Rd | 2 mikropml-1.5.0/mikropml/man/reexports.Rd | 6 mikropml-1.5.0/mikropml/man/remove_singleton_columns.Rd | 2 mikropml-1.5.0/mikropml/man/sensspec.Rd |only mikropml-1.5.0/mikropml/man/shared_ggprotos.Rd |only mikropml-1.5.0/mikropml/man/train_model.Rd | 2 mikropml-1.5.0/mikropml/tests/testthat/fixtures |only mikropml-1.5.0/mikropml/tests/testthat/test-checks.R | 10 mikropml-1.5.0/mikropml/tests/testthat/test-compare_models.R | 63 - mikropml-1.5.0/mikropml/tests/testthat/test-corr_feats.R | 75 +- mikropml-1.5.0/mikropml/tests/testthat/test-cross_val.R | 1 mikropml-1.5.0/mikropml/tests/testthat/test-feature_importance.R | 77 -- mikropml-1.5.0/mikropml/tests/testthat/test-hyperparameters.R | 98 +- mikropml-1.5.0/mikropml/tests/testthat/test-partition.R | 1 mikropml-1.5.0/mikropml/tests/testthat/test-performance.R |only mikropml-1.5.0/mikropml/tests/testthat/test-plot.R | 38 + mikropml-1.5.0/mikropml/tests/testthat/test-preprocess.R |only mikropml-1.5.0/mikropml/tests/testthat/test-run_ml.R | 4 mikropml-1.5.0/mikropml/tests/testthat/test-train.R |only mikropml-1.5.0/mikropml/vignettes/introduction.Rmd | 204 +++-- mikropml-1.5.0/mikropml/vignettes/paper.Rmd | 4 64 files changed, 1007 insertions(+), 765 deletions(-)
Title: Light Gradient Boosting Machine
Description: Tree based algorithms can be improved by introducing boosting frameworks.
'LightGBM' is one such framework, based on Ke, Guolin et al. (2017) <https://papers.nips.cc/paper/6907-lightgbm-a-highly-efficient-gradient-boosting-decision>.
This package offers an R interface to work with it.
It is designed to be distributed and efficient with the following advantages:
1. Faster training speed and higher efficiency.
2. Lower memory usage.
3. Better accuracy.
4. Parallel learning supported.
5. Capable of handling large-scale data.
In recognition of these advantages, 'LightGBM' has been widely-used in many winning solutions of machine learning competitions.
Comparison experiments on public datasets suggest that 'LightGBM' can outperform existing boosting frameworks on both efficiency and accuracy, with significantly lower memory consumption. In addition, parallel experiments suggest that in certain circumstances, 'LightGBM' can achieve a linear speed-up in training time by using multiple m [...truncated...]
Author: Yu Shi [aut, cre],
Guolin Ke [aut],
Damien Soukhavong [aut],
James Lamb [aut],
Qi Meng [aut],
Thomas Finley [aut],
Taifeng Wang [aut],
Wei Chen [aut],
Weidong Ma [aut],
Qiwei Ye [aut],
Tie-Yan Liu [aut],
Nikita Titov [aut],
Yachen Yan [ctb],
Microsof [...truncated...]
Maintainer: Yu Shi <yushi2@microsoft.com>
Diff between lightgbm versions 3.3.4 dated 2022-12-16 and 3.3.5 dated 2023-01-16
lightgbm-3.3.4/lightgbm/tests/testthat/Rplots.pdf |only lightgbm-3.3.4/lightgbm/tests/testthat/lightgbm.model |only lightgbm-3.3.5/lightgbm/DESCRIPTION | 8 ++++---- lightgbm-3.3.5/lightgbm/MD5 | 10 ++++------ lightgbm-3.3.5/lightgbm/configure | 18 +++++++++--------- lightgbm-3.3.5/lightgbm/configure.ac | 2 +- lightgbm-3.3.5/lightgbm/src/io/json11.cpp | 17 ++++++++--------- 7 files changed, 26 insertions(+), 29 deletions(-)
Title: Landscape Epidemiology and Evolution
Description: A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution
of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies.
It is based on a spatial geometry for describing the landscape and allocation of different cultivars,
a dispersal kernel for the dissemination of the pathogen, and a SEIR
('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step.
It provides a useful tool to assess the performance of a wide range of deployment options with
respect to their epidemiological, evolutionary and economic outcomes.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut] ,
Julien Papaix [aut],
Jean-Francois Rey [aut, cre] ,
Marta Zaffaroni [ctb] ,
Jean-Loup Gaussen [ctb]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>
Diff between landsepi versions 1.2.3 dated 2023-01-16 and 1.2.4 dated 2023-01-16
DESCRIPTION | 8 MD5 | 22 R/landsepi.R | 2 data/dispP_a40_b7.rda |binary data/landscapesTEST.rda |binary inst/doc/O1-run_simple_simul.html | 1195 +++++++++++++++++++---------------- inst/doc/O2-run_exp_design.html | 501 +++++++------- inst/doc/O3-landscape_dispersal.html | 355 ++++++---- inst/doc/O4-run_sex_repro.html | 570 +++++++++------- inst/doc/landsepi_poster.pdf |binary inst/doc/list_of_parameters.pdf |binary man/landsepi-package.Rd | 4 12 files changed, 1496 insertions(+), 1161 deletions(-)
Title: Make Materials Data FAIR
Description: We provide here tools used by the Solar Durability and Lifetime Extension Center (SDLE)
for FAIRifying data from materials science projects. Functions have been created for numerous tools common
in the field in order to make the metadata more Findable, Accessible, Interoperable, and Reproducible.
Author: Will Oltjen [aut] ,
Mingjian Lu [aut],
Liangyi Huang [aut] ,
Xuanji Yu [aut],
Arafath Nihar [aut],
Tommy Ciardi [aut],
Erika Barcelos [aut],
Pawan Tripathi [aut],
Abhishek Daundkar [aut],
Deepa Bhuvanagiri [aut],
Hope Omodolor [aut],
Hein Htet-Aung [ [...truncated...]
Maintainer: Roger French <roger.french@case.edu>
Diff between FAIRmaterials versions 0.1.0 dated 2023-01-06 and 0.2.0 dated 2023-01-16
FAIRmaterials-0.1.0/FAIRmaterials/data/GeospatialWell.rda |only FAIRmaterials-0.1.0/FAIRmaterials/man/GeospatialWell.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/DESCRIPTION | 17 + FAIRmaterials-0.2.0/FAIRmaterials/MD5 | 110 ++++++++-- FAIRmaterials-0.2.0/FAIRmaterials/NAMESPACE | 4 FAIRmaterials-0.2.0/FAIRmaterials/R/external_functions.R |only FAIRmaterials-0.2.0/FAIRmaterials/R/fairify_data.R | 107 ++++++++- FAIRmaterials-0.2.0/FAIRmaterials/build |only FAIRmaterials-0.2.0/FAIRmaterials/data/Buildings.rda |only FAIRmaterials-0.2.0/FAIRmaterials/data/CapillaryElectrophoresis.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/MaterialsProcessing.rda |only FAIRmaterials-0.2.0/FAIRmaterials/data/MetalAM.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/OpticalProfilometry.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/OpticalSpectroscopy.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/PVCell.rda |only FAIRmaterials-0.2.0/FAIRmaterials/data/PVInverter.rda |only FAIRmaterials-0.2.0/FAIRmaterials/data/PVModule.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/PVSystem.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/PolymerAM.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/PolymerBacksheets.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/PolymerFormulations.rda |only FAIRmaterials-0.2.0/FAIRmaterials/data/XCT.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/data/XRD.rda |binary FAIRmaterials-0.2.0/FAIRmaterials/inst |only FAIRmaterials-0.2.0/FAIRmaterials/man/Buildings.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/MaterialsProcessing.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/PVCell.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/PVInverter.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/PolymerFormulations.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/fair_expand.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/fairify_data.Rd | 16 + FAIRmaterials-0.2.0/FAIRmaterials/man/json_conversion.Rd | 6 FAIRmaterials-0.2.0/FAIRmaterials/man/plot_json_graph.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/man/validate_jsonld.Rd |only FAIRmaterials-0.2.0/FAIRmaterials/tests/testthat/test-fairify_data.R | 2 FAIRmaterials-0.2.0/FAIRmaterials/vignettes |only 36 files changed, 220 insertions(+), 42 deletions(-)
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with
remote database tables as if they are in-memory data frames. Basic
features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 2.2.1 dated 2022-06-27 and 2.3.0 dated 2023-01-16
DESCRIPTION | 43 - MD5 | 344 +++++------ NAMESPACE | 40 + NEWS.md | 149 +++++ R/backend-.R | 25 R/backend-hana.R | 9 R/backend-hive.R | 2 R/backend-mssql.R | 30 - R/backend-mysql.R | 17 R/backend-oracle.R | 18 R/backend-postgres.R | 24 R/backend-redshift.R | 28 R/backend-snowflake.R | 233 +++++++ R/backend-sqlite.R | 4 R/backend-teradata.R | 102 +++ R/db-escape.R | 13 R/db-io.R | 55 + R/db-sql.R | 148 ++++ R/lazy-join-query.R | 166 ++++- R/lazy-ops.R | 2 R/lazy-select-query.R | 85 +- R/lazy-set-op-query.R | 6 R/optimise-utils.R |only R/query-join.R | 245 +++++++- R/query-semi-join.R | 5 R/remote.R | 54 + R/rows.R | 99 ++- R/sql-build.R | 27 R/sql-clause.R | 8 R/sql.R | 6 R/src_dbi.R | 2 R/tbl-lazy.R | 24 R/tbl-sql.R | 7 R/testthat.R | 22 R/tidyeval-across.R | 175 ++++- R/tidyeval.R | 67 +- R/translate-sql-conditional.R | 92 +++ R/translate-sql-helpers.R | 4 R/translate-sql-window.R | 40 + R/translate-sql.R | 6 R/utils-format.R | 32 - R/utils.R | 7 R/verb-arrange.R | 1 R/verb-compute.R | 13 R/verb-copy-to.R | 137 +++- R/verb-count.R | 33 - R/verb-distinct.R | 50 + R/verb-fill.R | 38 - R/verb-filter.R | 80 ++ R/verb-group_by.R | 7 R/verb-head.R | 12 R/verb-joins.R | 386 +++++++++++-- R/verb-mutate.R | 171 +++-- R/verb-pivot-longer.R | 2 R/verb-pivot-wider.R | 14 R/verb-select.R | 138 ++-- R/verb-set-ops.R | 2 R/verb-slice.R | 47 + R/verb-summarise.R | 167 +++++ R/verb-uncount.R | 7 R/verb-window.R | 15 README.md | 2 build/dbplyr.pdf |binary build/vignette.rds |binary inst/doc/backend-2.html | 124 ++-- inst/doc/dbplyr.R | 2 inst/doc/dbplyr.Rmd | 2 inst/doc/dbplyr.html | 278 ++++----- inst/doc/new-backend.html | 126 ++-- inst/doc/reprex.html | 128 ++-- inst/doc/sql.html | 124 ++-- inst/doc/translation-function.html | 138 ++-- inst/doc/translation-verb.html | 124 ++-- man/args_by.Rd |only man/backend-hana.Rd | 2 man/backend-hive.Rd | 2 man/backend-mssql.Rd | 2 man/backend-mysql.Rd | 2 man/backend-snowflake.Rd | 2 man/complete.tbl_lazy.Rd | 2 man/copy_inline.Rd | 7 man/db-sql.Rd | 7 man/dbplyr-slice.Rd | 11 man/expand.tbl_lazy.Rd | 2 man/fill.tbl_lazy.Rd | 2 man/filter.tbl_lazy.Rd | 7 man/join.tbl_sql.Rd | 24 man/mutate.tbl_lazy.Rd | 10 man/partial_eval.Rd | 2 man/pivot_longer.tbl_lazy.Rd | 2 man/pivot_wider.tbl_lazy.Rd | 2 man/replace_na.tbl_lazy.Rd | 2 man/sql_build.Rd | 26 man/summarise.tbl_lazy.Rd | 7 man/win_over.Rd | 5 man/window_order.Rd | 2 tests/testthat/_snaps/backend-.md | 8 tests/testthat/_snaps/backend-hana.md | 41 + tests/testthat/_snaps/backend-mssql.md | 6 tests/testthat/_snaps/backend-mysql.md | 10 tests/testthat/_snaps/backend-oracle.md | 62 +- tests/testthat/_snaps/backend-postgres.md | 22 tests/testthat/_snaps/backend-redshift.md |only tests/testthat/_snaps/backend-sqlite.md | 55 + tests/testthat/_snaps/backend-teradata.md | 49 + tests/testthat/_snaps/db-io.md |only tests/testthat/_snaps/db-sql.md | 43 + tests/testthat/_snaps/escape.md | 4 tests/testthat/_snaps/lazy-join-query.md | 141 ---- tests/testthat/_snaps/lazy-select-query.md | 6 tests/testthat/_snaps/query-join.md | 82 +- tests/testthat/_snaps/query-semi-join.md | 14 tests/testthat/_snaps/rows.md | 119 ++-- tests/testthat/_snaps/sql.md | 2 tests/testthat/_snaps/tidyeval-across.md | 153 ++++- tests/testthat/_snaps/translate-sql-conditional.md | 86 ++ tests/testthat/_snaps/verb-arrange.md | 37 - tests/testthat/_snaps/verb-compute.md |only tests/testthat/_snaps/verb-copy-to.md | 17 tests/testthat/_snaps/verb-count.md | 10 tests/testthat/_snaps/verb-distinct.md | 13 tests/testthat/_snaps/verb-expand.md | 14 tests/testthat/_snaps/verb-fill.md | 60 +- tests/testthat/_snaps/verb-filter.md | 122 ++++ tests/testthat/_snaps/verb-group_by.md | 34 + tests/testthat/_snaps/verb-joins.md | 113 +++ tests/testthat/_snaps/verb-mutate.md | 26 tests/testthat/_snaps/verb-pivot-longer.md | 9 tests/testthat/_snaps/verb-pivot-wider.md | 16 tests/testthat/_snaps/verb-pull.md |only tests/testthat/_snaps/verb-select.md | 149 ++++- tests/testthat/_snaps/verb-slice.md | 22 tests/testthat/_snaps/verb-summarise.md | 57 + tests/testthat/_snaps/verb-uncount.md | 45 + tests/testthat/_snaps/verb-window.md |only tests/testthat/helper-src.R | 8 tests/testthat/test-backend-.R | 12 tests/testthat/test-backend-hana.R | 15 tests/testthat/test-backend-mssql.R | 17 tests/testthat/test-backend-mysql.R | 13 tests/testthat/test-backend-oracle.R | 17 tests/testthat/test-backend-postgres.R | 56 + tests/testthat/test-backend-redshift.R | 16 tests/testthat/test-backend-sqlite.R | 5 tests/testthat/test-backend-teradata.R | 44 + tests/testthat/test-db-escape.R |only tests/testthat/test-db-io.R |only tests/testthat/test-db-sql.R | 16 tests/testthat/test-lazy-join-query.R | 65 -- tests/testthat/test-lazy-select-query.R | 1 tests/testthat/test-query-join.R | 49 + tests/testthat/test-remote.R | 1 tests/testthat/test-rows.R | 33 + tests/testthat/test-tbl-lazy.R | 4 tests/testthat/test-test-backend-snowflake.R | 96 +++ tests/testthat/test-tidyeval-across.R | 207 +++++- tests/testthat/test-tidyeval.R | 1 tests/testthat/test-translate-sql-conditional.R | 146 ++++ tests/testthat/test-translate-sql-window.R | 26 tests/testthat/test-translate-sql.R | 12 tests/testthat/test-verb-arrange.R | 2 tests/testthat/test-verb-compute.R | 26 tests/testthat/test-verb-copy-to.R | 22 tests/testthat/test-verb-count.R | 23 tests/testthat/test-verb-distinct.R | 114 +++ tests/testthat/test-verb-do.R | 4 tests/testthat/test-verb-fill.R | 21 tests/testthat/test-verb-filter.R | 218 +++++++ tests/testthat/test-verb-group_by.R | 19 tests/testthat/test-verb-joins.R | 623 ++++++++++++++++++++- tests/testthat/test-verb-mutate.R | 49 + tests/testthat/test-verb-pull.R | 8 tests/testthat/test-verb-select.R | 145 ++++ tests/testthat/test-verb-slice.R | 29 tests/testthat/test-verb-summarise.R | 58 + tests/testthat/test-verb-uncount.R | 12 tests/testthat/test-verb-window.R |only vignettes/dbplyr.Rmd | 2 178 files changed, 6886 insertions(+), 1959 deletions(-)
Title: Animation of Multiple Trajectories with Uncertainty
Description: Animation of observed trajectories using spline-based interpolation (see for example, Buderman, F. E., Hooten, M. B., Ivan, J. S. and Shenk, T. M. (2016), <doi:10.1111/2041-210X.12465> "A functional model for characterizing long-distance movement behaviour". Methods Ecol Evol). Intended to be used exploratory data analysis, and perhaps for preparation of presentations.
Author: Henry Scharf [aut, cre],
Kristine Dinh [aut],
Rosales Hugo [aut],
Rivera Angelica [aut]
Maintainer: Henry Scharf <hscharf@sdsu.edu>
Diff between anipaths versions 0.10.1 dated 2021-05-17 and 0.10.2 dated 2023-01-16
anipaths-0.10.1/anipaths/inst/logo/IMG-0272.PNG |only anipaths-0.10.1/anipaths/inst/logo/IMG-0274.PNG |only anipaths-0.10.1/anipaths/inst/logo/IMG-0275.PNG |only anipaths-0.10.1/anipaths/inst/logo/IMG-0276.PNG |only anipaths-0.10.1/anipaths/inst/logo/IMG-0277.png |only anipaths-0.10.2/anipaths/DESCRIPTION | 28 anipaths-0.10.2/anipaths/MD5 | 61 - anipaths-0.10.2/anipaths/NAMESPACE | 9 anipaths-0.10.2/anipaths/NEWS | 17 anipaths-0.10.2/anipaths/R/animate_paths.R | 209 ++- anipaths-0.10.2/anipaths/R/animation_expression.R | 305 +++-- anipaths-0.10.2/anipaths/R/blur.R |only anipaths-0.10.2/anipaths/R/check_overwrite.R |only anipaths-0.10.2/anipaths/R/data.R | 23 anipaths-0.10.2/anipaths/R/gam_interpolation.R | 68 - anipaths-0.10.2/anipaths/R/mapping.R |only anipaths-0.10.2/anipaths/R/plot.R | 22 anipaths-0.10.2/anipaths/build/vignette.rds |binary anipaths-0.10.2/anipaths/data/whales.rda |only anipaths-0.10.2/anipaths/inst/doc/anipaths.R | 101 - anipaths-0.10.2/anipaths/inst/doc/anipaths.Rmd | 124 +- anipaths-0.10.2/anipaths/inst/doc/anipaths.html | 587 +++++++---- anipaths-0.10.2/anipaths/inst/doc/anipaths_crawl.html | 433 ++++++-- anipaths-0.10.2/anipaths/inst/doc/anipaths_gam.R |only anipaths-0.10.2/anipaths/inst/doc/anipaths_gam.Rmd |only anipaths-0.10.2/anipaths/inst/doc/anipaths_gam.html |only anipaths-0.10.2/anipaths/man/animate_paths.Rd | 9 anipaths-0.10.2/anipaths/man/animation_expression.Rd | 7 anipaths-0.10.2/anipaths/man/blur_point.Rd |only anipaths-0.10.2/anipaths/man/check_overwrite.Rd |only anipaths-0.10.2/anipaths/man/gam_interp.Rd | 15 anipaths-0.10.2/anipaths/man/get_googlemap_min_scale.Rd |only anipaths-0.10.2/anipaths/man/googlemap_proj.Rd |only anipaths-0.10.2/anipaths/man/new_alpha.Rd |only anipaths-0.10.2/anipaths/man/paths_gam_interp.Rd | 16 anipaths-0.10.2/anipaths/man/plot.Rd | 13 anipaths-0.10.2/anipaths/man/vultures.Rd | 4 anipaths-0.10.2/anipaths/man/whales.Rd |only anipaths-0.10.2/anipaths/tests/testthat/test-animate_paths.R | 9 anipaths-0.10.2/anipaths/vignettes/anipaths.Rmd | 124 +- anipaths-0.10.2/anipaths/vignettes/anipaths_gam.Rmd |only 41 files changed, 1424 insertions(+), 760 deletions(-)
Title: R MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] ,
Richard M. Heiberger [ctb] , *Bin, *Dec),
John C. Nash [ctb] , origin of unirootR),
Hans W. Borchers [ctb] ; origin of
hjkMpfr)
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 0.8-9 dated 2022-06-03 and 0.9-0 dated 2023-01-16
Rmpfr-0.8-9/Rmpfr/vignettes/jsslogo.jpg |only Rmpfr-0.9-0/Rmpfr/DESCRIPTION | 19 - Rmpfr-0.9-0/Rmpfr/MD5 | 54 +-- Rmpfr-0.9-0/Rmpfr/NAMESPACE | 2 Rmpfr-0.9-0/Rmpfr/R/mpfr.R | 13 Rmpfr-0.9-0/Rmpfr/R/special-fun.R | 17 - Rmpfr-0.9-0/Rmpfr/R/unirootR.R | 249 +++++++++++++--- Rmpfr-0.9-0/Rmpfr/TODO | 12 Rmpfr-0.9-0/Rmpfr/build/partial.rdb |binary Rmpfr-0.9-0/Rmpfr/build/vignette.rds |binary Rmpfr-0.9-0/Rmpfr/inst/NEWS.Rd | 36 ++ Rmpfr-0.9-0/Rmpfr/inst/check-tools.R | 35 +- Rmpfr-0.9-0/Rmpfr/inst/doc/Maechler_useR_2011-abstr.pdf |binary Rmpfr-0.9-0/Rmpfr/inst/doc/Rmpfr-pkg.R | 52 +++ Rmpfr-0.9-0/Rmpfr/inst/doc/Rmpfr-pkg.Rnw | 60 +++ Rmpfr-0.9-0/Rmpfr/inst/doc/Rmpfr-pkg.pdf |binary Rmpfr-0.9-0/Rmpfr/inst/doc/log1mexp-note.Rnw | 4 Rmpfr-0.9-0/Rmpfr/inst/doc/log1mexp-note.pdf |binary Rmpfr-0.9-0/Rmpfr/man/distr-etc.Rd | 15 Rmpfr-0.9-0/Rmpfr/man/fr_ld_expMpfr.Rd | 6 Rmpfr-0.9-0/Rmpfr/man/mpfr-utils.Rd | 13 Rmpfr-0.9-0/Rmpfr/man/mpfr.Rd | 4 Rmpfr-0.9-0/Rmpfr/man/qnormI.Rd |only Rmpfr-0.9-0/Rmpfr/man/sapplyMpfr.Rd | 76 +++- Rmpfr-0.9-0/Rmpfr/man/unirootR.Rd | 64 +++- Rmpfr-0.9-0/Rmpfr/tests/functionals.R | 6 Rmpfr-0.9-0/Rmpfr/tests/matrix-ex.R | 25 - Rmpfr-0.9-0/Rmpfr/vignettes/Rmpfr-pkg.Rnw | 60 +++ Rmpfr-0.9-0/Rmpfr/vignettes/log1mexp-note.Rnw | 4 29 files changed, 674 insertions(+), 152 deletions(-)
Title: Methods for Visualization of Computer Experiments Design and
Surrogate
Description: View 2D/3D sections, contour plots, mesh of excursion sets for computer experiments designs, surrogates or test functions.
Author: Yann Richet [aut, cre] ,
Yves Deville [aut],
Clement Chevalier [ctb]
Maintainer: Yann Richet <yann.richet@irsn.fr>
Diff between DiceView versions 2.0-2 dated 2022-09-22 and 2.1-0 dated 2023-01-16
DiceView-2.0-2/DiceView/R/contourview.fun.R |only DiceView-2.0-2/DiceView/R/contourview.km.R |only DiceView-2.0-2/DiceView/R/contourview.list.R |only DiceView-2.0-2/DiceView/R/sectionview.fun.R |only DiceView-2.0-2/DiceView/R/sectionview.km.R |only DiceView-2.0-2/DiceView/R/sectionview.list.R |only DiceView-2.0-2/DiceView/R/sectionview3d.fun.R |only DiceView-2.0-2/DiceView/R/sectionview3d.km.R |only DiceView-2.0-2/DiceView/R/sectionview3d.list.R |only DiceView-2.0-2/DiceView/R/wrapper.R |only DiceView-2.0-2/DiceView/man/contourview.function.Rd |only DiceView-2.0-2/DiceView/man/contourview.km.Rd |only DiceView-2.0-2/DiceView/man/contourview.list.Rd |only DiceView-2.0-2/DiceView/man/sectionview.function.Rd |only DiceView-2.0-2/DiceView/man/sectionview.km.Rd |only DiceView-2.0-2/DiceView/man/sectionview.list.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.function.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.km.Rd |only DiceView-2.0-2/DiceView/man/sectionview3d.list.Rd |only DiceView-2.1-0/DiceView/DESCRIPTION | 16 DiceView-2.1-0/DiceView/MD5 | 47 -- DiceView-2.1-0/DiceView/NAMESPACE | 26 - DiceView-2.1-0/DiceView/R/Utils.R | 14 DiceView-2.1-0/DiceView/R/contourview.R |only DiceView-2.1-0/DiceView/R/function.R | 18 DiceView-2.1-0/DiceView/R/mesh_set.R | 146 +++++- DiceView-2.1-0/DiceView/R/sectionview.R |only DiceView-2.1-0/DiceView/R/sectionview3d.R |only DiceView-2.1-0/DiceView/R/wrapper3d.R | 22 DiceView-2.1-0/DiceView/man/Vectorize.function.Rd | 12 DiceView-2.1-0/DiceView/man/branin.Rd |only DiceView-2.1-0/DiceView/man/contourview.Rd | 377 ++++++++++++++++- DiceView-2.1-0/DiceView/man/mesh_exsets.Rd | 4 DiceView-2.1-0/DiceView/man/mesh_roots.Rd | 4 DiceView-2.1-0/DiceView/man/sectionview.Rd | 388 +++++++++++++++++ DiceView-2.1-0/DiceView/man/sectionview3d.Rd | 398 +++++++++++++++++- 36 files changed, 1331 insertions(+), 141 deletions(-)
Title: Sparsity by Worst-Case Quadratic Penalties
Description: Fits classical sparse regression models with
efficient active set algorithms by solving quadratic problems as described by
Grandvalet, Chiquet and Ambroise (2017) <arXiv:1210.2077>. Also provides a few
methods for model selection purpose (cross-validation, stability selection).
Author: Julien Chiquet [aut, cre]
Maintainer: Julien Chiquet <julien.chiquet@inrae.fr>
Diff between quadrupen versions 0.2-9 dated 2022-08-25 and 0.2-10 dated 2023-01-16
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/init.R | 2 +- R/quadrupen-package.R | 11 ++++------- R/quadrupen.R | 33 ++++++++++++--------------------- README.md | 2 -- inst/WORDLIST | 1 + man/bounded.reg.Rd | 19 +++++++------------ man/elastic.net.Rd | 18 +++++++----------- man/quadrupen-package.Rd | 11 ++++------- src/bounded_reg.cpp | 2 +- src/elastic_net.cpp | 2 +- 13 files changed, 59 insertions(+), 80 deletions(-)
Title: Mediation Analysis for Generalized Linear Models Using the
Difference Method
Description: Causal mediation analysis for a single exposure/treatment and a
single mediator, both allowed to be either continuous or binary. The package
implements the difference method and provides point and interval estimates as
well as testing for the natural direct and indirect effects and the mediation
proportion. Nevo, Xiao and Spiegelman (2017) <doi:10.1515/ijb-2017-0006>.
Author: Daniel Nevo [aut, cre]
Maintainer: Daniel Nevo <danielnevo@gmail.com>
Diff between GEEmediate versions 1.1.3 dated 2019-07-18 and 1.1.4 dated 2023-01-16
DESCRIPTION | 15 +- MD5 | 6 - R/GEEmediate.R | 278 +++++++++++++++++++++++++++--------------------------- man/GEEmediate.Rd | 18 ++- 4 files changed, 163 insertions(+), 154 deletions(-)
Title: An Implementation of Matrix Mathematics
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>
Diff between matsbyname versions 0.5.0 dated 2022-04-01 and 0.5.1 dated 2023-01-16
matsbyname-0.5.0/matsbyname/man/make_list.Rd |only matsbyname-0.5.1/matsbyname/DESCRIPTION | 14 matsbyname-0.5.1/matsbyname/LICENSE | 2 matsbyname-0.5.1/matsbyname/MD5 | 124 - matsbyname-0.5.1/matsbyname/NAMESPACE | 8 matsbyname-0.5.1/matsbyname/NEWS.md | 44 matsbyname-0.5.1/matsbyname/R/Apply.R | 12 matsbyname-0.5.1/matsbyname/R/CompletingMatrices.R | 163 - matsbyname-0.5.1/matsbyname/R/Unary.R | 445 +++- matsbyname-0.5.1/matsbyname/R/Utilities.R | 485 ++++ matsbyname-0.5.1/matsbyname/R/agg_helpers.R | 6 matsbyname-0.5.1/matsbyname/R/trim.R | 10 matsbyname-0.5.1/matsbyname/build/vignette.rds |binary matsbyname-0.5.1/matsbyname/inst/CITATION | 8 matsbyname-0.5.1/matsbyname/inst/doc/about-vector-arguments.html | 443 +++- matsbyname-0.5.1/matsbyname/inst/doc/aggregation-vignette.R | 32 matsbyname-0.5.1/matsbyname/inst/doc/aggregation-vignette.Rmd | 79 matsbyname-0.5.1/matsbyname/inst/doc/aggregation-vignette.html | 972 ++++++---- matsbyname-0.5.1/matsbyname/inst/doc/applybyname-vignette.html | 444 +++- matsbyname-0.5.1/matsbyname/inst/doc/matsbyname.R | 2 matsbyname-0.5.1/matsbyname/inst/doc/matsbyname.Rmd | 6 matsbyname-0.5.1/matsbyname/inst/doc/matsbyname.html | 514 ++++- matsbyname-0.5.1/matsbyname/inst/doc/using-summarise-in-matsbyname.html | 353 ++- matsbyname-0.5.1/matsbyname/man/abs_byname.Rd | 1 matsbyname-0.5.1/matsbyname/man/aggregate_byname.Rd | 11 matsbyname-0.5.1/matsbyname/man/aggregate_pieces_byname.Rd | 12 matsbyname-0.5.1/matsbyname/man/aggregate_to_pref_suff_byname.Rd | 4 matsbyname-0.5.1/matsbyname/man/clean_byname.Rd | 23 matsbyname-0.5.1/matsbyname/man/colprods_byname.Rd | 4 matsbyname-0.5.1/matsbyname/man/colsums_byname.Rd | 7 matsbyname-0.5.1/matsbyname/man/coltype.Rd | 4 matsbyname-0.5.1/matsbyname/man/complete_rows_cols.Rd | 61 matsbyname-0.5.1/matsbyname/man/eigenvalues_byname.Rd |only matsbyname-0.5.1/matsbyname/man/eigenvectors_byname.Rd |only matsbyname-0.5.1/matsbyname/man/exp_byname.Rd | 1 matsbyname-0.5.1/matsbyname/man/fractionize_byname.Rd | 4 matsbyname-0.5.1/matsbyname/man/getzerorowcolnames_byname.Rd |only matsbyname-0.5.1/matsbyname/man/hatinv_byname.Rd | 4 matsbyname-0.5.1/matsbyname/man/hatize_byname.Rd | 3 matsbyname-0.5.1/matsbyname/man/invert_byname.Rd | 26 matsbyname-0.5.1/matsbyname/man/iszero_byname.Rd | 7 matsbyname-0.5.1/matsbyname/man/log_byname.Rd | 1 matsbyname-0.5.1/matsbyname/man/prep_vector_arg.Rd | 13 matsbyname-0.5.1/matsbyname/man/prodall_byname.Rd | 6 matsbyname-0.5.1/matsbyname/man/rename_to_piece_byname.Rd | 25 matsbyname-0.5.1/matsbyname/man/rowprods_byname.Rd | 6 matsbyname-0.5.1/matsbyname/man/rowsums_byname.Rd | 3 matsbyname-0.5.1/matsbyname/man/rowtype.Rd | 4 matsbyname-0.5.1/matsbyname/man/select_cols_byname.Rd | 14 matsbyname-0.5.1/matsbyname/man/select_rowcol_piece_byname.Rd |only matsbyname-0.5.1/matsbyname/man/select_rows_byname.Rd | 30 matsbyname-0.5.1/matsbyname/man/selectzerocols_byname.Rd |only matsbyname-0.5.1/matsbyname/man/selectzerorows_byname.Rd |only matsbyname-0.5.1/matsbyname/man/setcoltype.Rd | 10 matsbyname-0.5.1/matsbyname/man/setrowtype.Rd | 10 matsbyname-0.5.1/matsbyname/man/sumall_byname.Rd | 9 matsbyname-0.5.1/matsbyname/man/svd_byname.Rd |only matsbyname-0.5.1/matsbyname/man/transpose_byname.Rd | 7 matsbyname-0.5.1/matsbyname/man/trim_rows_cols.Rd | 4 matsbyname-0.5.1/matsbyname/man/unaryapply_byname.Rd | 2 matsbyname-0.5.1/matsbyname/man/vec_from_store_byname.Rd | 16 matsbyname-0.5.1/matsbyname/tests/testthat/test_Binary.R | 4 matsbyname-0.5.1/matsbyname/tests/testthat/test_CompletingMatrices.R | 36 matsbyname-0.5.1/matsbyname/tests/testthat/test_Unary.R | 276 ++ matsbyname-0.5.1/matsbyname/tests/testthat/test_Utilities.R | 444 ++++ matsbyname-0.5.1/matsbyname/vignettes/aggregation-vignette.Rmd | 79 matsbyname-0.5.1/matsbyname/vignettes/matsbyname.Rmd | 6 67 files changed, 4126 insertions(+), 1217 deletions(-)
Title: Statistics Norway's Miscellaneous Tools
Description: Functions used by other packages from Statistics Norway are gathered. General data manipulation functions, and functions for hierarchical computations are included (Langsrud, 2020) <doi:10.13140/RG.2.2.27313.61283>. The hierarchy specification functions are useful within statistical disclosure control.
Author: Oyvind Langsrud [aut, cre],
Daniel Lupp [aut],
Bjoern-Helge Mevik [ctb]
Maintainer: Oyvind Langsrud <oyl@ssb.no>
Diff between SSBtools versions 1.3.8 dated 2022-12-08 and 1.4.0 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 21 +++++++++++++++++---- NAMESPACE | 9 +++++++++ R/FormulaSelection.R | 5 +++++ R/aggregate_multiple_fun.R |only R/dummy_aggregate.R |only R/model_aggregate.R |only R/quantile_weighted.R |only man/FormulaSelection.Rd | 6 ++++++ man/aggregate_multiple_fun.Rd |only man/dummy_aggregate.Rd |only man/fix_fun_amf.Rd |only man/fix_vars_amf.Rd |only man/model_aggregate.Rd |only man/quantile_weighted.Rd |only man/unmatrix.Rd |only tests/testthat/helper-aggregate_multiple_fun.R |only tests/testthat/test-aggregate_multiple_fun.R |only 18 files changed, 41 insertions(+), 8 deletions(-)
Title: Identify Rogue Taxa in Sets of Phylogenetic Trees
Description: Rogue ("wildcard") taxa are leaves with uncertain phylogenetic
position.
Their position may vary from tree to tree under inference methods that yield a
tree set (e.g. bootstrapping, Bayesian tree searches, maximum parsimony).
The presence of rogue taxa in a tree set can potentially remove all
information from a consensus tree. The information content of a consensus
tree - a function of its resolution and branch support values - can often be
increased by removing rogue taxa.
'Rogue' provides an explicitly information-theoretic approach to rogue
detection (Smith 2022) <doi:10.1093/sysbio/syab099>,
and an interface to 'RogueNaRok' (Aberer et al. 2013)
<doi:10.1093/sysbio/sys078>.
Author: Martin R. Smith [aut, cre, cph]
,
Andre J. Aberer [aut, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Rogue versions 2.1.3 dated 2022-09-26 and 2.1.4 dated 2023-01-16
DESCRIPTION | 8 MD5 | 22 - NEWS.md | 6 build/partial.rdb |binary inst/doc/Bayesian.html | 146 +++++----- src/graph_geodesic.c | 2 src/rnr/BitVector.c | 4 src/rnr/BitVector.h | 4 src/rnr/RogueNaRok.c | 8 src/rnr/Tree.c | 687 +++++++++++++++++++------------------------------ src/rnr/common.c | 6 src/rnr/common.h | 4 12 files changed, 392 insertions(+), 505 deletions(-)
Title: Correlated Trait Locus Mapping
Description: Identification and network inference of genetic loci associated
with correlation changes in quantitative traits (called correlated trait loci, CTLs).
Arends et al. (2016) <doi:10.21105/joss.00087>.
Author: Danny Arends <Danny.Arends@gmail.com>, Yang Li, Gudrun A Brockmann,
Ritsert C Jansen, Robert W Williams, and Pjotr Prins
Maintainer: Danny Arends <Danny.Arends@gmail.com>
Diff between ctl versions 1.0.0-7 dated 2022-02-09 and 1.0.0-8 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/manual.pdf |binary src/ctlio.c | 2 +- src/structs.h | 2 +- src/vector.c | 2 +- 7 files changed, 13 insertions(+), 13 deletions(-)
Title: Geographic Data Analysis and Modeling
Description: Reading, writing, manipulating, analyzing and modeling of spatial data. This package has been superseded by the "terra" package <https://CRAN.R-project.org/package=terra>.
Author: Robert J. Hijmans [cre, aut] ,
Jacob van Etten [ctb],
Michael Sumner [ctb],
Joe Cheng [ctb],
Dan Baston [ctb],
Andrew Bevan [ctb],
Roger Bivand [ctb],
Lorenzo Busetto [ctb],
Mort Canty [ctb],
Ben Fasoli [ctb],
David Forrest [ctb],
Aniruddha Ghosh [ct [...truncated...]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between raster versions 3.6-13 dated 2023-01-07 and 3.6-14 dated 2023-01-16
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/AAAClasses.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Landscape Epidemiology and Evolution
Description: A stochastic, spatially-explicit, demo-genetic model simulating the spread and evolution
of a plant pathogen in a heterogeneous landscape to assess resistance deployment strategies.
It is based on a spatial geometry for describing the landscape and allocation of different cultivars,
a dispersal kernel for the dissemination of the pathogen, and a SEIR
('Susceptible-Exposed-Infectious-Removed’) structure with a discrete time step.
It provides a useful tool to assess the performance of a wide range of deployment options with
respect to their epidemiological, evolutionary and economic outcomes.
Loup Rimbaud, Julien Papaïx, Jean-François Rey, Luke G Barrett,
Peter H Thrall (2018) <doi:10.1371/journal.pcbi.1006067>.
Author: Loup Rimbaud [aut] ,
Julien Papaix [aut],
Jean-Francois Rey [aut, cre] ,
Marta Zaffaroni [ctb] ,
Jean-Loup Gaussen [ctb]
Maintainer: Jean-Francois Rey <jean-francois.rey@inrae.fr>
Diff between landsepi versions 1.2.2 dated 2022-10-06 and 1.2.3 dated 2023-01-16
DESCRIPTION | 8 MD5 | 34 R/landsepi.R | 4 build/vignette.rds |binary configure | 53 + data/dispP_a40_b7.rda |binary data/landscapesTEST.rda |binary inst/doc/O1-run_simple_simul.html | 1195 +++++++++++++++-------------------- inst/doc/O2-run_exp_design.html | 501 ++++++-------- inst/doc/O3-landscape_dispersal.html | 355 ++++------ inst/doc/O4-run_sex_repro.html | 570 +++++++--------- inst/doc/landsepi_poster.pdf |binary inst/doc/list_of_parameters.Rnw | 4 inst/doc/list_of_parameters.pdf |binary src/Makevars.in | 6 src/Makevars.win | 7 src/Model.cpp | 14 vignettes/list_of_parameters.Rnw | 4 18 files changed, 1235 insertions(+), 1520 deletions(-)
Title: Design and Analysis of Hierarchical Composite Endpoints
Description: Simulate and analyze hierarchical composite endpoints. Win odds is the main analysis method. See Gasparyan SB et al (2022) <doi:10.1007/s43441-022-00420-1>.
Author: Samvel B. Gasparyan [aut, cre]
Maintainer: Samvel B. Gasparyan <gasparyan.co@gmail.com>
Diff between hce versions 0.4.0 dated 2023-01-05 and 0.5.0 dated 2023-01-16
DESCRIPTION | 8 +- MD5 | 81 +++++++++++++++++------------ NAMESPACE | 4 + R/calcWINS.R | 2 R/calcWINS_data_frame.R | 6 +- R/calcWINS_formula.R | 2 R/calcWINS_hce.R | 2 R/calcWO_data_frame.R | 4 - R/calcWO_formula.R | 2 R/data.R | 8 +- R/minWO.R | 23 +++++--- R/plot_results.R | 1 R/powerWO.R | 25 +++++---- R/print_results.R | 4 - R/propWINS.R |only R/regWO.R |only R/regWO_data_frame.R |only R/sizeWO.R | 18 ++++-- R/sizeWR.R |only R/summaryWO_formula.R | 7 +- build/vignette.rds |binary data/COVID19.rda |binary data/COVID19b.rda |binary inst/doc/Introduction.Rmd | 15 ++--- inst/doc/Introduction.html | 51 ++++++++++-------- inst/doc/Wins.R |only inst/doc/Wins.Rmd |only inst/doc/Wins.html |only man/COVID19.Rd | 2 man/COVID19b.Rd | 6 +- man/calcWINS.Rd | 2 man/calcWINS.data.frame.Rd | 2 man/calcWINS.formula.Rd | 2 man/calcWINS.hce.Rd | 2 man/calcWO.formula.Rd | 2 man/figures |only man/minWO.Rd | 5 + man/powerWO.Rd | 8 ++ man/propWINS.Rd |only man/regWO.Rd |only man/regWO.data.frame.Rd |only man/sizeWO.Rd | 5 + man/sizeWR.Rd |only man/summaryWO.formula.Rd | 2 tests/testthat/test-sizeWo.R | 5 + vignettes/Introduction.Rmd | 15 ++--- vignettes/REFERENCES.bib | 118 ++++++++++++++++++++++++++++++++++++++++++- vignettes/Wins.Rmd |only 48 files changed, 307 insertions(+), 132 deletions(-)
Title: Fit Models Derived from Point Processes to Species Distributions
using 'inlabru'
Description: Integrated species distribution modeling is a rising field in quantitative ecology thanks to significant rises in the quantity of data available, increases in computational speed and the proven benefits of using such models.
Despite this, the general software to help ecologists construct such models in an easy-to-use framework is lacking.
We therefore introduce the R package 'PointedSDMs': which provides the tools to help ecologists set up integrated models and perform inference on them.
There are also functions within the package to help run spatial cross-validation for model selection, as well as generic plotting and predicting functions.
An introduction to these methods is discussed in Issac, Jarzyna, Keil, Dambly, Boersch-Supan, Browning, Freeman, Golding, Guillera-Arroita, Henrys, Jarvis, Lahoz-Monfort, Pagel, Pescott, Schmucki, Simmonds and O’Hara (2020) <doi:10.1016/j.tree.2019.08.006>.
Author: Philip Mostert [aut, cre],
Bob O'hara [aut]
Maintainer: Philip Mostert <philip.s.mostert@ntnu.no>
Diff between PointedSDMs versions 1.1.1 dated 2022-09-05 and 1.2.0 dated 2023-01-16
DESCRIPTION | 6 - MD5 | 77 +++++++------ NEWS.md | 9 + R/bruSDM_predict.R | 57 ++++++++-- R/data.Koala.R |only R/dataOrganize.R | 23 +++- R/dataSDM.R | 86 ++++++++++++--- R/datasetOut.R | 2 R/fitISDM.R | 12 +- R/intModel.R | 30 +++-- R/makeLhoods.R | 14 ++ README.md | 4 build/vignette.rds |binary data/Koala.rda |only inst/References.bib | 24 ++++ inst/doc/Marked_Point_Process.R |only inst/doc/Marked_Point_Process.Rmd |only inst/doc/Marked_Point_Process.html |only inst/doc/Setophaga.Rmd | 9 - inst/doc/Setophaga.html | 145 ++++++++++++-------------- inst/doc/Solitary_tinamou.R | 14 ++ inst/doc/Solitary_tinamou.Rmd | 22 +++ inst/doc/Solitary_tinamou.html | 167 ++++++++++++++++-------------- inst/doc/Spatiotemporal_example.Rmd | 2 inst/doc/Spatiotemporal_example.html | 117 ++++++++++----------- man/Koala.Rd |only man/dataOrganize.Rd | 3 man/dataSDM.Rd | 4 man/figures/README-predict_and_plot-1.png |binary man/intModel.Rd | 13 +- man/makeLhoods.Rd | 5 man/predict.Rd | 5 tests/testthat/testthat_blockedCV.R | 3 tests/testthat/testthat_dataOrganize.R | 46 +++++++- tests/testthat/testthat_dataSDM.R | 10 + tests/testthat/testthat_datasetOut.R | 4 tests/testthat/testthat_fitISDM.R | 3 tests/testthat/testthat_intModel.R | 3 tests/testthat/testthat_makeLhoods.R | 4 vignettes/Marked_Point_Process.Rmd |only vignettes/Setophaga.Rmd | 9 - vignettes/Solitary_tinamou.Rmd | 22 +++ vignettes/Spatiotemporal_example.Rmd | 2 43 files changed, 624 insertions(+), 332 deletions(-)
Title: Retrieve and Plot Google n-Gram Data
Description: Retrieve and plot word frequencies through time from the "Google
Ngram Viewer" <https://books.google.com/ngrams>.
Author: Sean Carmody [aut, cre, cph]
Maintainer: Sean Carmody <seancarmody@gmail.com>
Diff between ngramr versions 1.9.1 dated 2022-11-10 and 1.9.3 dated 2023-01-16
DESCRIPTION | 12 ++++++------ LICENSE |only MD5 | 7 ++++--- NEWS.md | 2 +- R/ngram.R | 24 +++++++++++++----------- 5 files changed, 24 insertions(+), 21 deletions(-)
Title: Geometric Morphometric Analyses of 2D and 3D Landmark Data
Description: Read, manipulate, and digitize landmark data, generate shape
variables via Procrustes analysis for points, curves and surfaces, perform
shape analyses, and provide graphical depictions of shapes and patterns of
shape variation.
Author: Dean Adams [aut, cre],
Michael Collyer [aut],
Antigoni Kaliontzopoulou [aut],
Erica Baken [aut]
Maintainer: Dean Adams <dcadams@iastate.edu>
Diff between geomorph versions 4.0.4 dated 2022-06-23 and 4.0.5 dated 2023-01-16
DESCRIPTION | 12 MD5 | 97 - NAMESPACE | 62 NEWS.md | 10 R/bilat.symmetry.r | 70 - R/combine.subsets.R | 78 - R/compare.CR.R | 15 R/compare.physign.z.r |only R/compare.pls.r | 1 R/digit.curves.r | 11 R/geomorph.support.code.r | 206 ++- R/geomorph.utils.r | 2422 +++++++++++++++++++------------------ R/gm.prcomp.R | 6 R/gpagen.r | 3 R/integration.test.r | 2 R/make_ggplot.r | 43 R/modularity.test.r | 16 R/morphol.disparity.r | 121 - R/phylo.modularity.r | 17 R/physignal.r | 20 R/physignal.z.r |only R/picknplot.shape.r | 2 R/plotRefToTarget.r | 13 R/plotspec.r | 10 R/readland.nts.r | 6 R/readland.tps.r | 18 R/rotate.coords.R | 4 R/shape.predictor.r | 204 +-- R/shapeHulls.r | 3 R/shared.support.code.R | 60 R/two.b.pls.r | 2 build/vignette.rds |binary inst/doc/geomorph.PCA.html | 128 + inst/doc/geomorph.assistance.html | 170 +- inst/doc/geomorph.digitize3D.html | 128 + inst/doc/geomorph.functions.html | 18 man/bilat.symmetry.Rd | 70 - man/combine.subsets.Rd | 77 - man/compare.CR.Rd | 2 man/compare.physignal.z.Rd |only man/make_ggplot.Rd | 43 man/modularity.test.Rd | 16 man/morphol.disparity.Rd | 121 - man/phylo.modularity.Rd | 17 man/physignal.Rd | 17 man/physignal.z.Rd |only man/plot.gm.prcomp.Rd | 10 man/plot.physignal.z.Rd |only man/plotRefToTarget.Rd | 11 man/print.compare.physignal.z.Rd |only man/print.physignal.z.Rd |only man/shape.predictor.Rd | 196 +- man/summary.compare.physignal.z.Rd |only man/summary.physignal.z.Rd |only 54 files changed, 2504 insertions(+), 2054 deletions(-)
Title: Shiny Applications Internationalization
Description: It provides easy internationalization of Shiny
applications. It can be used as standalone translation package
to translate reports, interactive visualizations or
graphical elements as well.
Author: Jakub Nowicki [cre, aut],
Dominik Krzeminski [aut],
Krystian Igras [aut],
Jakub Sobolewski [aut],
Appsilon Sp. z o.o. [cph]
Maintainer: Jakub Nowicki <opensource+kuba@appsilon.com>
Diff between shiny.i18n versions 0.2.0 dated 2020-10-02 and 0.3.0 dated 2023-01-16
DESCRIPTION | 39 +++++++++-------- MD5 | 65 ++++++++++++++-------------- NAMESPACE | 2 NEWS.md |only R/automatic.R | 4 - R/preproc.R | 34 ++++++++------ R/translator.R | 20 +++++--- R/ui.R | 14 ++++-- R/utils.R | 22 +++++++-- R/zzz.R | 3 + README.md | 74 ++++++++++++++++---------------- inst/WORDLIST |only man/Translator.Rd | 89 +++++++++++++++++++++------------------ man/check_value_presence.Rd | 1 man/column_to_row.Rd | 1 man/create_translation_addin.Rd | 1 man/create_translation_file.Rd | 2 man/dot-i18_config.Rd | 2 man/dot-onLoad.Rd | 1 man/dot-translator_options.Rd | 2 man/extract_key_expressions.Rd | 1 man/figures/demo.gif |only man/get_i18n_config.Rd | 1 man/i18n_state.Rd | 1 man/load_local_config.Rd | 1 man/multmerge.Rd | 3 - man/read_and_merge_csvs.Rd | 1 man/save_to_csv.Rd | 1 man/save_to_json.Rd | 1 man/update_lang.Rd | 6 +- man/validate_names.Rd | 1 tests/testthat/test_preproc.R | 7 +-- tests/testthat/test_translator.R | 70 +++++++++++++++++++++++++----- tests/testthat/test_utils.R | 4 - tests/testthat/test_zzz.R | 1 35 files changed, 295 insertions(+), 180 deletions(-)
Title: Generic Reproducible Parallel Backend for 'foreach' Loops
Description: Provides functions to perform
reproducible parallel foreach loops, using independent
random streams as generated by L'Ecuyer's combined
multiple-recursive generator [L'Ecuyer (1999), <DOI:10.1287/opre.47.1.159>].
It enables to easily convert standard '%dopar%' loops into
fully reproducible loops, independently of the number
of workers, the task scheduling strategy, or the chosen
parallel environment and associated foreach backend.
Author: Renaud Gaujoux [aut, cre]
Maintainer: Renaud Gaujoux <renozao@protonmail.com>
Diff between doRNG versions 1.8.3 dated 2022-12-19 and 1.8.6 dated 2023-01-16
doRNG-1.8.3/doRNG/NEWS |only doRNG-1.8.6/doRNG/DESCRIPTION | 19 +++++---- doRNG-1.8.6/doRNG/MD5 | 27 ++++++++------ doRNG-1.8.6/doRNG/NEWS.md |only doRNG-1.8.6/doRNG/R/doRNG-package.R | 8 ++-- doRNG-1.8.6/doRNG/R/doRNG.R | 26 +++++++------ doRNG-1.8.6/doRNG/build |only doRNG-1.8.6/doRNG/inst/REFERENCES.bib | 11 +++-- doRNG-1.8.6/doRNG/inst/doc/doRNG.R |only doRNG-1.8.6/doRNG/inst/doc/doRNG.Rnw |only doRNG-1.8.6/doRNG/inst/doc/doRNG.pdf |binary doRNG-1.8.6/doRNG/man/doRNG-package.Rd | 17 +++----- doRNG-1.8.6/doRNG/man/doRNGversion.Rd | 22 +++++------ doRNG-1.8.6/doRNG/man/grapes-dorng-grapes.Rd | 21 +++++----- doRNG-1.8.6/doRNG/man/infoDoRNG.Rd | 14 +++---- doRNG-1.8.6/doRNG/man/registerDoRNG.Rd | 17 +++++--- doRNG-1.8.6/doRNG/tests/testthat/test-dorng-nonattached.r |only doRNG-1.8.6/doRNG/vignettes |only 18 files changed, 97 insertions(+), 85 deletions(-)
Title: Get Executing Script's Path, from 'Rgui', 'RStudio', 'VSCode',
'source()', and 'Rscript' (Shells Including Windows Command
Line / / Unix Terminal)
Description: Determine the path of the executing script. Works when
running a line or selection in 'Rgui', 'RStudio', and 'VSCode',
when using 'source()', 'sys.source()', 'debugSource()' in 'RStudio',
'testthat::source_file()', and 'knitr::knit()', and when running
from a shell.
Author: Andrew Simmons
Maintainer: Andrew Simmons <akwsimmo@gmail.com>
Diff between this.path versions 1.1.0 dated 2022-12-01 and 1.2.0 dated 2023-01-16
this.path-1.1.0/this.path/README |only this.path-1.1.0/this.path/inst/extdata/r-editor_not-ucrt.txt |only this.path-1.1.0/this.path/inst/extdata/untitled_not-ucrt.txt |only this.path-1.1.0/this.path/man/this.path.in.VSCode.Rd |only this.path-1.2.0/this.path/DESCRIPTION | 21 this.path-1.2.0/this.path/LICENSE | 2 this.path-1.2.0/this.path/MD5 | 111 this.path-1.2.0/this.path/NAMESPACE | 8 this.path-1.2.0/this.path/NEWS | 76 this.path-1.2.0/this.path/R/Args.R | 4 this.path-1.2.0/this.path/R/LINENO.R | 2 this.path-1.2.0/this.path/R/all.char.R | 39 this.path-1.2.0/this.path/R/as.relative.path.R | 111 this.path-1.2.0/this.path/R/check.path.R | 60 this.path-1.2.0/this.path/R/debuginfo.R |only this.path-1.2.0/this.path/R/from.shell.R | 11 this.path-1.2.0/this.path/R/hooks-for-namespace-events.R | 23 this.path-1.2.0/this.path/R/promises.R | 359 ++- this.path-1.2.0/this.path/R/requirethispathhelper.R |only this.path-1.2.0/this.path/R/rprojroot.R | 6 this.path-1.2.0/this.path/R/this.path.R | 1257 ----------- this.path-1.2.0/this.path/R/utils.R | 156 + this.path-1.2.0/this.path/R/wrapsource.R | 5 this.path-1.2.0/this.path/R/zzz.R |only this.path-1.2.0/this.path/README.md |only this.path-1.2.0/this.path/build/partial.rdb |binary this.path-1.2.0/this.path/build/this.path.pdf |binary this.path-1.2.0/this.path/inst/NEWS.Rd | 255 +- this.path-1.2.0/this.path/inst/extdata/README |only this.path-1.2.0/this.path/inst/extdata/main.R |only this.path-1.2.0/this.path/inst/extdata/r-editor_msvcrt.txt |only this.path-1.2.0/this.path/inst/extdata/r-editor_ucrt.txt | 45 this.path-1.2.0/this.path/inst/extdata/untitled_msvcrt.txt |only this.path-1.2.0/this.path/inst/extdata/untitled_ucrt.txt | 51 this.path-1.2.0/this.path/man/LINENO.Rd | 14 this.path-1.2.0/this.path/man/R.from.shell.Rd | 4 this.path-1.2.0/this.path/man/Sys.putenv.Rd |only this.path-1.2.0/this.path/man/as.relative.path.Rd | 2 this.path-1.2.0/this.path/man/shFILE.Rd | 15 this.path-1.2.0/this.path/man/this.path-package.Rd | 11 this.path-1.2.0/this.path/man/this.path.Rd | 204 + this.path-1.2.0/this.path/man/tryCatch2.Rd | 2 this.path-1.2.0/this.path/man/wrap.source.Rd | 30 this.path-1.2.0/this.path/src/args.c | 24 this.path-1.2.0/this.path/src/basename2.c | 7 this.path-1.2.0/this.path/src/drivewidth.c | 6 this.path-1.2.0/this.path/src/drivewidth.h | 16 this.path-1.2.0/this.path/src/ext.c | 20 this.path-1.2.0/this.path/src/hooks-for-namespace-events.c | 124 - this.path-1.2.0/this.path/src/init.c | 20 this.path-1.2.0/this.path/src/isabspath.c | 2 this.path-1.2.0/this.path/src/pathjoin.c | 28 this.path-1.2.0/this.path/src/promises.c | 51 this.path-1.2.0/this.path/src/requirethispathhelper.h | 10 this.path-1.2.0/this.path/src/shfile.c | 531 ++++ this.path-1.2.0/this.path/src/symbols.h | 15 this.path-1.2.0/this.path/src/this.path.h | 35 this.path-1.2.0/this.path/src/thispath.c | 161 + this.path-1.2.0/this.path/src/thispathdefn.c | 193 + this.path-1.2.0/this.path/src/thispathdefn.h | 24 this.path-1.2.0/this.path/src/thispathversion.h | 4 this.path-1.2.0/this.path/src/wrapsource.c | 91 this.path-1.2.0/this.path/tests/this.path.tests.R | 4 63 files changed, 2381 insertions(+), 1869 deletions(-)
Title: Mining Frequent Sequences
Description: Add-on for arules to handle and mine frequent sequences.
Provides interfaces to the C++ implementation of cSPADE by
Mohammed J. Zaki.
Author: Christian Buchta and Michael Hahsler, with contributions from
Daniel Diaz
Maintainer: Christian Buchta <christian.buchta@wu.ac.at>
Diff between arulesSequences versions 0.2-27 dated 2022-12-07 and 0.2-28 dated 2023-01-16
CHANGELOG | 4 ++++ DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ src/TPOSE/exttpose.cc | 26 +++++++++++++------------- src/TPOSE/getconf.cc | 4 ++-- src/cSPADE/partition.cc | 8 ++++---- src/cSPADE/sequence.cc | 12 ++++++------ 7 files changed, 38 insertions(+), 34 deletions(-)
More information about arulesSequences at CRAN
Permanent link
Title: Filtering and Assessing the Sample Size of Tracking Data
Description: Functions to filter GPS/Argos locations, as well as assessing the sample size for the analysis of animal distributions. The filters remove temporal and spatial duplicates, fixes located at a given height from estimated high tide line, and locations with high error as described in Shimada et al. (2012) <doi:10.3354/meps09747> and Shimada et al. (2016) <doi:10.1007/s00227-015-2771-0>. Sample size for the analysis of animal distributions can be assessed by the conventional area-based approach or the alternative probability-based approach as described in Shimada et al. (2021) <doi:10.1111/2041-210X.13506>.
Author: Takahiro Shimada
Maintainer: Takahiro Shimada <taka.shimada@gmail.com>
Diff between SDLfilter versions 2.3.0 dated 2022-10-14 and 2.3.1 dated 2023-01-16
DESCRIPTION | 10 MD5 | 50 +- NEWS | 8 NEWS.md | 7 R/ddfilter.R | 235 +++++------ R/ddfilter_loop.R | 332 +++++++-------- R/ddfilter_speed.R | 310 +++++++------- R/depthfilter.R | 776 ++++++++++++++++++------------------- R/distfilter.R | 385 ++++++++++-------- R/dupfilter.R | 6 R/dupfilter_qi.R | 312 +++++++------- R/dupfilter_space.R | 646 +++++++++++++++--------------- R/dupfilter_time.R | 532 ++++++++++++------------- R/to_map.R | 442 ++++++++++----------- R/ud_raster.R | 2 R/vmax.R | 257 +++++------- R/vmaxlp.R | 580 +++++++++++++-------------- README.md | 2 build/partial.rdb |binary man/ddfilter.Rd | 2 man/distfilter.Rd | 18 man/figures/unnamed-chunk-13-1.png |binary man/figures/unnamed-chunk-7-1.png |binary man/ud_raster.Rd | 2 man/vmax.Rd | 20 man/vmaxlp.Rd | 12 26 files changed, 2504 insertions(+), 2442 deletions(-)
Title: Schloss Lab Tools for Reproducible Microbiome Research
Description: A collection of useful functions and example code created and
used by the Schloss Lab for reproducible microbiome research. Perform
common tasks like read files created by mothur <https://mothur.org/>,
tidy up your microbiome data, and format R Markdown documents for
publication. See the website <http://www.schlosslab.org/schtools/>
for more information, documentation, and examples.
Author: Kelly Sovacool [aut, cre] ,
Nick Lesniak [aut] ,
Patrick Schloss [aut],
Sarah Lucas [ctb] ,
Courtney Armour [ctb] ,
Jacqueline Moltzau [ctb] ,
Andrew Hannah [ctb],
Nielson Baxter [ctb],
Alyxandria Schubert [ctb],
Kathryn Iverson [ctb]
Maintainer: Kelly Sovacool <sovacool@umich.edu>
Diff between schtools versions 0.3.1 dated 2022-11-16 and 0.4.0 dated 2023-01-16
DESCRIPTION | 8 +- MD5 | 27 ++++---- NAMESPACE | 1 NEWS.md | 5 + R/calculate.R | 1 R/rmd_helpers.R | 1 R/shared.R | 1 R/snakemake.R |only R/utils.R | 47 --------------- README.md | 4 - inst/doc/introduction.html | 116 +++++++++++++++----------------------- man/get_wildcards_tbl.Rd |only man/log_snakemake.Rd | 2 tests/testthat/test-rmd_helpers.R | 1 tests/testthat/test-snakemake.R |only tests/testthat/test-utils.R | 41 ------------- 16 files changed, 76 insertions(+), 179 deletions(-)
Title: Interface to 'MLflow'
Description: R interface to 'MLflow', open source platform for
the complete machine learning life cycle, see <https://mlflow.org/>.
This package supports installing 'MLflow', tracking experiments,
creating and running projects, and saving and serving models.
Author: Matei Zaharia [aut, cre],
Javier Luraschi [aut],
Kevin Kuo [aut] ,
RStudio [cph]
Maintainer: Matei Zaharia <matei@databricks.com>
Diff between mlflow versions 2.0.1 dated 2022-11-21 and 2.1.1 dated 2023-01-16
mlflow-2.0.1/mlflow/tests/testthat/test |only mlflow-2.1.1/mlflow/DESCRIPTION | 6 mlflow-2.1.1/mlflow/MD5 | 22 +- mlflow-2.1.1/mlflow/NAMESPACE | 1 mlflow-2.1.1/mlflow/R/databricks-utils.R | 16 ++ mlflow-2.1.1/mlflow/R/model-registry.R | 51 ++++++ mlflow-2.1.1/mlflow/R/tracking-runs.R | 74 +++++++--- mlflow-2.1.1/mlflow/README.md | 61 ++++---- mlflow-2.1.1/mlflow/man/build_context_tags_from_databricks_job_info.Rd |only mlflow-2.1.1/mlflow/man/build_context_tags_from_databricks_notebook_info.Rd |only mlflow-2.1.1/mlflow/man/mlflow_search_runs.Rd | 5 mlflow-2.1.1/mlflow/man/mlflow_set_model_version_tag.Rd |only mlflow-2.1.1/mlflow/tests/testthat/test-model-registry.R | 22 ++ mlflow-2.1.1/mlflow/tests/testthat/test-tracking-runs.R | 37 ++++- 14 files changed, 226 insertions(+), 69 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data
management system with support for the Structured Query Language (SQL). This package includes all of
DuckDB and a R Database Interface (DBI) connector.
Author: Hannes Muehleisen [aut, cre] ,
Mark Raasveldt [aut] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrochers [cph],
Victor Z [...truncated...]
Maintainer: Hannes Muehleisen <hannes@cwi.nl>
Diff between duckdb versions 0.6.1 dated 2022-12-08 and 0.6.2 dated 2023-01-16
duckdb-0.6.1/duckdb/src/duckdb/src/common/limits.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/common/progress_bar.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/function/table/system/pragma_functions.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/common/progress_bar.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/cardinality_estimator.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/estimated_properties.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/join_node.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order_optimizer.hpp |only duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/cardinality_estimator.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/estimated_properties.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/join_node.cpp |only duckdb-0.6.1/duckdb/src/duckdb/src/optimizer/join_order_optimizer.cpp |only duckdb-0.6.2/duckdb/DESCRIPTION | 8 duckdb-0.6.2/duckdb/MD5 | 2197 duckdb-0.6.2/duckdb/NAMESPACE | 1 duckdb-0.6.2/duckdb/R/Connection.R | 2 duckdb-0.6.2/duckdb/R/Driver.R | 4 duckdb-0.6.2/duckdb/R/Viewer.R | 1 duckdb-0.6.2/duckdb/R/backend-dbplyr__duckdb_connection.R | 11 duckdb-0.6.2/duckdb/R/cpp11.R | 12 duckdb-0.6.2/duckdb/R/dbConnect__duckdb_driver.R | 2 duckdb-0.6.2/duckdb/R/register.R | 5 duckdb-0.6.2/duckdb/R/relational.R | 49 duckdb-0.6.2/duckdb/R/substrait.R | 21 duckdb-0.6.2/duckdb/man/backend-duckdb.Rd | 5 duckdb-0.6.2/duckdb/man/duckdb_prepare_substrait_json.Rd |only duckdb-0.6.2/duckdb/man/duckdb_register.Rd | 4 duckdb-0.6.2/duckdb/src/Makevars | 4 duckdb-0.6.2/duckdb/src/Makevars.win | 4 duckdb-0.6.2/duckdb/src/connection.cpp | 1 duckdb-0.6.2/duckdb/src/cpp11.cpp | 24 duckdb-0.6.2/duckdb/src/database.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/column_reader.cpp | 275 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/column_writer.cpp | 267 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/boolean_column_reader.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/callback_column_reader.hpp | 9 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/column_reader.hpp | 32 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/column_writer.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/generated_column_reader.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/parquet_dbp_decoder.hpp | 13 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/parquet_reader.hpp | 19 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/parquet_writer.hpp | 18 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/resizable_buffer.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/string_column_reader.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/include/templated_column_reader.hpp | 32 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/parquet-extension.cpp | 316 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/parquet_metadata.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/parquet_reader.cpp | 86 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/parquet_statistics.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/parquet_writer.cpp | 29 duckdb-0.6.2/duckdb/src/duckdb/extension/parquet/zstd_file_system.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog.cpp | 699 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/column_dependency_manager.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/index_catalog_entry.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/pragma_function_catalog_entry.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/scalar_function_catalog_entry.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/scalar_macro_catalog_entry.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/schema_catalog_entry.cpp | 153 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/table_catalog_entry.cpp | 101 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/table_function_catalog_entry.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_entry/view_catalog_entry.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_search_path.cpp | 207 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_set.cpp | 247 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/catalog_transaction.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/catalog/default/default_functions.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/default/default_types.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/default/default_views.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/catalog/dependency_list.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/catalog/dependency_manager.cpp | 32 duckdb-0.6.2/duckdb/src/duckdb/src/common/allocator.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/common/arrow/arrow_appender.cpp | 34 duckdb-0.6.2/duckdb/src/duckdb/src/common/arrow/arrow_converter.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/common/arrow/arrow_wrapper.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/box_renderer.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/compressed_file_system.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/constants.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/catalog_type.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/compression_type.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/expression_type.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/logical_operator_type.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/physical_operator_type.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/enums/statement_type.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/exception_format_value.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/file_system.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/gzip_file_system.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/local_file_system.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/common/operator/cast_operators.cpp | 161 duckdb-0.6.2/duckdb/src/duckdb/src/common/pipe_file_system.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/preserved_error.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/common/printer.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/progress_bar |only duckdb-0.6.2/duckdb/src/duckdb/src/common/radix_partitioning.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/row_operations/row_gather.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/common/row_operations/row_match.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/common/row_operations/row_scatter.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/serializer/buffered_serializer.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/sort/comparators.cpp | 34 duckdb-0.6.2/duckdb/src/duckdb/src/common/sort/merge_sorter.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/common/sort/sort_state.cpp | 28 duckdb-0.6.2/duckdb/src/duckdb/src/common/sort/sorted_block.cpp | 36 duckdb-0.6.2/duckdb/src/duckdb/src/common/string_util.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/common/tree_renderer.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/common/types.cpp | 144 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/batched_data_collection.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/chunk_collection.cpp | 329 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/column_data_allocator.cpp | 88 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/column_data_collection.cpp | 168 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/column_data_collection_segment.cpp | 39 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/column_data_consumer.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/data_chunk.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/date.cpp | 61 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/hash.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/partitioned_column_data.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/row_data_collection.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/row_data_collection_scanner.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/row_layout.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/timestamp.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/validity_mask.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/value.cpp | 54 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/vector.cpp | 138 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/vector_buffer.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/common/types/vector_cache.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/common/vector_operations/comparison_operators.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/common/vector_operations/is_distinct_from.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/vector_operations/vector_hash.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/common/virtual_file_system.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/aggregate_hashtable.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/execution/base_aggregate_hashtable.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/expression_executor.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/expression_executor/execute_case.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/expression_executor/execute_comparison.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/execution/expression_executor/execute_conjunction.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/expression_executor/execute_function.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/art.cpp | 80 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/leaf.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/node.cpp | 81 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/node16.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/node256.cpp | 27 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/node4.cpp | 29 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/node48.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/execution/index/art/prefix.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/join_hashtable.cpp | 96 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/aggregate_object.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/distinct_aggregate_data.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/grouped_aggregate_data.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/physical_hash_aggregate.cpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/physical_perfecthash_aggregate.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/physical_streaming_window.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/physical_ungrouped_aggregate.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/aggregate/physical_window.cpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/filter/physical_filter.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_batch_collector.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_limit.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_materialized_collector.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_reset.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_set.cpp | 29 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_limit.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_streaming_sample.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_transaction.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/helper/physical_vacuum.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/perfect_hash_join_executor.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_blockwise_nl_join.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_cross_product.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_delim_join.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_hash_join.cpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_iejoin.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_index_join.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_nested_loop_join.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_piecewise_merge_join.cpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/join/physical_range_join.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/order/physical_order.cpp | 123 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/order/physical_top_n.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/base_csv_reader.cpp | 83 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/buffered_csv_reader.cpp | 119 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/csv_buffer.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/csv_reader_options.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/parallel_csv_reader.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_batch_insert.cpp | 43 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_copy_to_file.cpp | 71 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_delete.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_export.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_insert.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/persistent/physical_update.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/projection/physical_projection.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/projection/physical_tableinout_function.cpp | 64 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/projection/physical_unnest.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/scan/physical_table_scan.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_alter.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_attach.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_function.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_index.cpp | 115 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_schema.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_sequence.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_table.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_type.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_create_view.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/schema/physical_drop.cpp | 34 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/set/physical_recursive_cte.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/execution/operator/set/physical_union.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/partitionable_hashtable.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/execution/perfect_aggregate_hashtable.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_operator.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_aggregate.cpp | 39 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_any_join.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_column_data_get.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_comparison_join.cpp | 47 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_copy_to_file.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_create.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_create_index.cpp | 81 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_create_table.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_cross_product.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_delete.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_get.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_delim_join.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_distinct.cpp | 27 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_execute.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_explain.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_export.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_expression_get.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_filter.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_get.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_insert.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_limit.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_limit_percent.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_order.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_prepare.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_projection.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_recursive_cte.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_reset.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_sample.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_set_operation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_show_select.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_simple.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_top_n.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_unnest.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_update.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan/plan_window.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/execution/physical_plan_generator.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/execution/radix_partitioned_hashtable.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/reservoir_sample.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/execution/window_segment_tree.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/approx_count.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/arg_min_max.cpp | 307 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/count.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/first.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/minmax.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/distributive/string_agg.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/holistic/approximate_quantile.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/holistic/quantile.cpp | 154 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/holistic/reservoir_quantile.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/nested/histogram.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/function/aggregate/sorted_aggregate_function.cpp | 261 duckdb-0.6.2/duckdb/src/duckdb/src/function/built_in_functions.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/cast_function_set.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/decimal_cast.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/default_casts.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/enum_casts.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/list_casts.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/map_cast.cpp | 79 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/struct_cast.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/union_casts.cpp | 38 duckdb-0.6.2/duckdb/src/duckdb/src/function/cast/vector_cast_helpers.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/function/function.cpp | 79 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duckdb-0.6.2/duckdb/src/duckdb/src/function/table/pragma_detailed_profiling_output.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/pragma_last_profiling_output.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/range.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/read_csv.cpp | 350 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/repeat.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_columns.cpp | 59 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_constraints.cpp | 50 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_dependencies.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_extensions.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_functions.cpp | 67 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_indexes.cpp | 45 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_keywords.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_schemas.cpp | 26 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_sequences.cpp | 47 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_settings.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_tables.cpp | 43 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_types.cpp | 53 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/duckdb_views.cpp | 35 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/pragma_collations.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/pragma_database_list.cpp | 32 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/pragma_database_size.cpp | 63 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/pragma_storage_info.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/pragma_table_info.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/test_all_types.cpp | 50 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system/test_vector_types.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/system_functions.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/table_scan.cpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/unnest.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/function/table/version/pragma_version.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/function/table_function.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/function/table_macro_function.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/function/udf_function.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb.h | 143 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog.hpp | 185 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/aggregate_function_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/collate_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/copy_function_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/index_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/pragma_function_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_function_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/scalar_macro_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/schema_catalog_entry.hpp | 38 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/sequence_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_function_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/table_macro_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/type_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_entry/view_catalog_entry.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_search_path.hpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_set.hpp | 57 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/catalog_transaction.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_list.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/dependency_manager.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/catalog/mapping_value.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/allocator.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/constants.hpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/catalog_type.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/compression_type.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/expression_type.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/logical_operator_type.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/physical_operator_type.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/set_type.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/enums/statement_type.hpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/field_writer.hpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/file_opener.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/file_system.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/helper.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/http_stats.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/index_vector.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/limits.hpp | 101 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/preserved_error.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/progress_bar |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/serializer.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/sort/comparators.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/sort/sorted_block.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/string_util.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/tree_renderer.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types.hpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/chunk_collection.hpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_allocator.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/column_data_collection_segment.hpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/hugeint.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/selection_vector.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/string_heap.hpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/string_type.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/timestamp.hpp | 25 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/value.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/vector.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/types/vector_buffer.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/union_by_name.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/vector_operations/generic_executor.hpp | 139 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/virtual_file_system.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/common/windows.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/art.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node16.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node256.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node4.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/node48.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/index/art/prefix.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/join_hashtable.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_explain_analyze.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_limit_percent.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_load.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_pragma.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_prepare.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reservoir_sample.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_reset.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_set.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/helper/physical_transaction.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/order/physical_order.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/base_csv_reader.hpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/buffered_csv_reader.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_file_handle.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/csv_reader_options.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/parallel_csv_reader.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_copy_to_file.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_delete.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/persistent/physical_export.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/projection/physical_tableinout_function.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_column_data_scan.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_dummy_scan.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_empty_result.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/scan/physical_expression_scan.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_alter.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_attach.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_function.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_index.hpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_schema.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_sequence.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_create_view.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/operator/schema/physical_drop.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/physical_operator.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/execution/physical_plan_generator.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate/algebraic_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate/distributive_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate/holistic_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate/nested_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/aggregate/regression_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/built_in_functions.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/cast/default_casts.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/compression_function.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/copy_function.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/function.hpp | 61 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/function_serialization.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/function_set.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/pragma/pragma_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/replacement_scan.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/blob_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/date_functions.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/enum_functions.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/generic_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/math_functions.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/nested_functions.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/operators.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/regexp.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/sequence_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/string_functions.hpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/trigonometric_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar/uuid_functions.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/scalar_function.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/arrow.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/range.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/read_csv.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/summary.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/system_functions.hpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table/table_scan.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/table_function.hpp | 46 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/function/udf_function.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/attached_database.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/capi/capi_internal.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/client_config.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/client_context.hpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/client_context_file_opener.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/client_data.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/config.hpp | 29 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/connection.hpp | 18 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/connection_manager.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/database.hpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/database_manager.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/extension_functions.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/extension_helper.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/loadable_extension.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/prepared_statement.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/query_profiler.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/query_result.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/relation.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/settings.hpp | 76 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/main/valid_checker.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_combiner.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/filter_pushdown.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/cardinality_estimator.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/estimated_properties.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_node.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_order_optimizer.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/join_order/join_relation.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/expression_type_matcher.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/optimizer/matcher/function_matcher.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parallel/task_counter.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/between_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/case_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/cast_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/collate_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/columnref_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/comparison_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/conjunction_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/constant_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/function_expression.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/lambda_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/operator_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/parameter_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/positional_reference_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/star_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/subquery_expression.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/expression/window_expression.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_function_info.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_info.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/alter_table_info.hpp | 109 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/attach_info.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/copy_info.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_aggregate_function_info.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_collation_info.hpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_copy_function_info.hpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_index_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_info.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_macro_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_pragma_function_info.hpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_schema_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_sequence_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_function_info.hpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_table_info.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_type_info.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/create_view_info.hpp | 41 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/drop_info.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parsed_data/exported_table_data.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/parser_extension.hpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/qualified_name.hpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/query_error_context.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/result_modifier.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/sql_statement.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/attach_statement.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/export_statement.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/insert_statement.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/list.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/logical_plan_statement.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/statement/set_statement.hpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/tableref/basetableref.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/tokens.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/parser/transformer.hpp | 35 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/bind_context.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/binder.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/bound_result_modifier.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/bound_statement.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_foreign_key_constraint.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/constraints/bound_unique_constraint.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_lambdaref_expression.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/expression/bound_parameter_data.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder.hpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/expression_binder/lateral_binder.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/joinside.hpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/logical_operator.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/logical_tokens.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/list.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_comparison_join.hpp | 23 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_copy_to_file.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_index.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_create_table.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_distinct.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_execute.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_explain.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_export.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_expression_get.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_extension_operator.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_get.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_limit_percent.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_order.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_pragma.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_prepare.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_recursive_cte.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_reset.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_set_operation.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_show.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_simple.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/operator/logical_top_n.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_function_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/parsed_data/bound_create_table_info.hpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/subquery/flatten_dependent_join.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/subquery/has_correlated_expressions.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/table_binding.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_basetableref.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_crossproductref.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_joinref.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_subqueryref.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/planner/tableref/bound_table_function.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/arena_allocator.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/block_manager.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/buffer/block_handle.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/buffer_manager.hpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/checkpoint_manager.hpp | 19 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/bitpacking.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/chimp/chimp_compress.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_analyze.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/compression/patas/patas_compress.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/data_table.hpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/index.hpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/object_cache.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/partial_block_manager.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/single_file_block_manager.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/statistics/base_statistics.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/storage_info.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/storage_manager.hpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/string_uncompressed.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/table/data_table_info.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/table/row_group.hpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/table/segment_base.hpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/storage/write_ahead_log.hpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/local_storage.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/meta_transaction.hpp |only duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/transaction.hpp | 37 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_context.hpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/transaction_manager.hpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/include/duckdb/transaction/undo_buffer.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/appender.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/main/attached_database.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/arrow-c.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/data_chunk-c.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/duckdb-c.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/duckdb_value-c.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/logical_types-c.cpp | 136 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/pending-c.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/prepared-c.cpp | 66 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/replacement_scan-c.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/result-c.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/capi/table_function-c.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/main/client_context.cpp | 175 duckdb-0.6.2/duckdb/src/duckdb/src/main/client_data.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/main/client_verify.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/main/config.cpp | 92 duckdb-0.6.2/duckdb/src/duckdb/src/main/connection.cpp | 63 duckdb-0.6.2/duckdb/src/duckdb/src/main/database.cpp | 120 duckdb-0.6.2/duckdb/src/duckdb/src/main/database_manager.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/main/db_instance_cache.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/main/error_manager.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/extension/extension_install.cpp | 38 duckdb-0.6.2/duckdb/src/duckdb/src/main/extension/extension_load.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/main/extension_prefix_opener.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/main/materialized_query_result.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/main/pending_query_result.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/main/prepared_statement.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/main/prepared_statement_data.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/main/query_profiler.cpp | 45 duckdb-0.6.2/duckdb/src/duckdb/src/main/query_result.cpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation.cpp | 47 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/aggregate_relation.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/create_table_relation.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/create_view_relation.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/cross_product_relation.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/delete_relation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/distinct_relation.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/explain_relation.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/filter_relation.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/insert_relation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/join_relation.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/limit_relation.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/order_relation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/projection_relation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/query_relation.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/read_csv_relation.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/setop_relation.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/subquery_relation.cpp | 3 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/table_function_relation.cpp | 25 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/table_relation.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/update_relation.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/value_relation.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/view_relation.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/main/relation/write_csv_relation.cpp | 5 duckdb-0.6.2/duckdb/src/duckdb/src/main/settings/settings.cpp | 308 duckdb-0.6.2/duckdb/src/duckdb/src/main/stream_query_result.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/main/valid_checker.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/cse_optimizer.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/deliminator.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/expression_heuristics.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/expression_rewriter.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/filter_combiner.cpp | 71 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/filter_pullup.cpp | 38 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/filter_pushdown.cpp | 48 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/in_clause_rewriter.cpp | 28 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/cardinality_estimator.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/estimated_properties.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/join_node.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/join_order_optimizer.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/join_relation_set.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/join_order/query_graph.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/optimizer.cpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pullup/pullup_both_side.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pullup/pullup_filter.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pullup/pullup_from_left.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pullup/pullup_projection.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pullup/pullup_set_operation.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_aggregate.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_cross_product.cpp | 27 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_filter.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_get.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_inner_join.cpp | 18 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_left_join.cpp | 34 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_limit.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_mark_join.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_projection.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_set_operation.cpp | 18 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/pushdown/pushdown_single_join.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/regex_range_filter.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/remove_unused_columns.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/arithmetic_simplification.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/case_simplification.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/comparison_simplification.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/conjunction_simplification.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/constant_folding.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/date_part_simplification.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/distributivity.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/empty_needle_removal.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/enum_comparison.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/equal_or_null_simplification.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/in_clause_simplification_rule.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/optimizer/rule/like_optimizations.cpp | 16 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duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/collate_expression.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/columnref_expression.cpp | 30 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/comparison_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/conjunction_expression.cpp | 18 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/constant_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/default_expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/function_expression.cpp | 35 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/lambda_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/operator_expression.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/parameter_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/positional_reference_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/parser/expression/star_expression.cpp | 10 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duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_lambda.cpp | 68 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_macro_expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_operator_expression.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_parameter_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_subquery_expression.cpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_unnest_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/expression/bind_window_expression.cpp | 43 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_recursive_cte_node.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_select_node.cpp | 68 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_setop_node.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/bind_table_macro_node.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_query_node.cpp | 28 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_recursive_cte_node.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_select_node.cpp | 62 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_setop.cpp | 41 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/query_node/plan_subquery.cpp | 173 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_attach.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_call.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_copy.cpp | 49 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_create.cpp | 205 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_create_table.cpp | 32 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_delete.cpp | 26 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_drop.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_execute.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_explain.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_export.cpp | 25 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_extension.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_insert.cpp | 19 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_load.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_logical_plan.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_pragma.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_prepare.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_set.cpp | 28 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_show.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_simple.cpp | 21 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_summarize.cpp | 60 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_update.cpp | 26 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/statement/bind_vacuum.cpp | 18 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_basetableref.cpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_crossproductref.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_expressionlistref.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_joinref.cpp | 32 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_subqueryref.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/bind_table_function.cpp | 66 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/plan_basetableref.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/plan_crossproductref.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/plan_expressionlistref.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/plan_joinref.cpp | 140 duckdb-0.6.2/duckdb/src/duckdb/src/planner/binder/tableref/plan_table_function.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/bound_result_modifier.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_aggregate_expression.cpp | 13 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_between_expression.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_case_expression.cpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_cast_expression.cpp | 17 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_columnref_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_comparison_expression.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_conjunction_expression.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_constant_expression.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_function_expression.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_lambda_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_lambdaref_expression.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_operator_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_parameter_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_reference_expression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_subquery_expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_unnest_expression.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression/bound_window_expression.cpp | 15 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder.cpp | 22 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/alter_binder.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/check_binder.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/constant_binder.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/group_binder.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/having_binder.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/lateral_binder.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/order_binder.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/relation_binder.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_binder/select_binder.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/planner/expression_iterator.cpp | 1 duckdb-0.6.2/duckdb/src/duckdb/src/planner/filter/conjunction_filter.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/filter/constant_filter.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/joinside.cpp | 31 duckdb-0.6.2/duckdb/src/duckdb/src/planner/logical_operator.cpp | 26 duckdb-0.6.2/duckdb/src/duckdb/src/planner/logical_operator_visitor.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_aggregate.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_any_join.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_column_data_get.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_comparison_join.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_copy_to_file.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_create.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_create_index.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_create_table.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_cross_product.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_delete.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_delim_join.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_distinct.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_empty_result.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_explain.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_expression_get.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_filter.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_get.cpp | 41 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_insert.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_limit.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_limit_percent.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_order.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_projection.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_reset.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_sample.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_show.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_top_n.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_unnest.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_update.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/operator/logical_window.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/planner/parsed_data/bound_create_table_info.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/planner/planner.cpp | 19 duckdb-0.6.2/duckdb/src/duckdb/src/planner/pragma_handler.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/planner/subquery/flatten_dependent_join.cpp | 153 duckdb-0.6.2/duckdb/src/duckdb/src/planner/subquery/has_correlated_expressions.cpp | 11 duckdb-0.6.2/duckdb/src/duckdb/src/planner/subquery/rewrite_correlated_expressions.cpp | 7 duckdb-0.6.2/duckdb/src/duckdb/src/planner/table_binding.cpp | 28 duckdb-0.6.2/duckdb/src/duckdb/src/planner/table_filter.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/src/storage/arena_allocator.cpp | 14 duckdb-0.6.2/duckdb/src/duckdb/src/storage/buffer/buffer_handle.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/buffer_manager.cpp | 90 duckdb-0.6.2/duckdb/src/duckdb/src/storage/checkpoint/row_group_writer.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/checkpoint/table_data_reader.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/checkpoint/table_data_writer.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/checkpoint_manager.cpp | 33 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/bitpacking.cpp | 728 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/dictionary_compression.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/fixed_size_uncompressed.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/fsst.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/rle.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/string_uncompressed.cpp | 16 duckdb-0.6.2/duckdb/src/duckdb/src/storage/compression/validity_uncompressed.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/data_table.cpp | 65 duckdb-0.6.2/duckdb/src/duckdb/src/storage/index.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/local_storage.cpp | 39 duckdb-0.6.2/duckdb/src/duckdb/src/storage/meta_block_reader.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/partial_block_manager.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/single_file_block_manager.cpp | 46 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/base_statistics.cpp | 25 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/column_statistics.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/distinct_statistics.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/list_statistics.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/numeric_statistics.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/segment_statistics.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/string_statistics.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/statistics/struct_statistics.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/storage/storage_info.cpp | 33 duckdb-0.6.2/duckdb/src/duckdb/src/storage/storage_manager.cpp | 71 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/chunk_info.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/column_checkpoint_state.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/column_data.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/column_data_checkpointer.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/column_segment.cpp | 26 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/list_column_data.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/row_group.cpp | 40 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/row_group_collection.cpp | 29 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/scan_state.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/segment_tree.cpp | 10 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/standard_column_data.cpp | 20 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/struct_column_data.cpp | 34 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/table_statistics.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table/update_segment.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/src/storage/table_index_list.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/storage/wal_replay.cpp | 32 duckdb-0.6.2/duckdb/src/duckdb/src/storage/write_ahead_log.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/transaction/commit_state.cpp | 6 duckdb-0.6.2/duckdb/src/duckdb/src/transaction/meta_transaction.cpp |only duckdb-0.6.2/duckdb/src/duckdb/src/transaction/transaction.cpp | 42 duckdb-0.6.2/duckdb/src/duckdb/src/transaction/transaction_context.cpp | 52 duckdb-0.6.2/duckdb/src/duckdb/src/transaction/transaction_manager.cpp | 54 duckdb-0.6.2/duckdb/src/duckdb/src/transaction/undo_buffer.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/verification/copied_statement_verifier.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/verification/deserialized_statement_verifier.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/verification/external_statement_verifier.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/src/verification/parsed_statement_verifier.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/src/verification/prepared_statement_verifier.cpp | 24 duckdb-0.6.2/duckdb/src/duckdb/src/verification/statement_verifier.cpp | 9 duckdb-0.6.2/duckdb/src/duckdb/src/verification/unoptimized_statement_verifier.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/third_party/fmt/include/fmt/core.h | 6 duckdb-0.6.2/duckdb/src/duckdb/third_party/fmt/include/fmt/format.h | 20 duckdb-0.6.2/duckdb/src/duckdb/third_party/fsst/libfsst.cpp | 21 duckdb-0.6.2/duckdb/src/duckdb/third_party/httplib/httplib.hpp | 4 duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/include/nodes/nodes.hpp | 2 duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/include/nodes/parsenodes.hpp | 29 duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/include/parser/gram.hpp | 196 duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/include/parser/kwlist.hpp | 1 duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_gram.cpp |30776 +++++----- duckdb-0.6.2/duckdb/src/duckdb/third_party/libpg_query/src_backend_parser_scan.cpp | 70 duckdb-0.6.2/duckdb/src/duckdb/third_party/mbedtls/library/bignum.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/third_party/re2/re2/prog.cc | 12 duckdb-0.6.2/duckdb/src/duckdb/third_party/thrift/thrift/TApplicationException.h | 3 duckdb-0.6.2/duckdb/src/duckdb/third_party/zstd/decompress/huf_decompress.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/ub_src_catalog.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/ub_src_common.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/ub_src_common_progress_bar.cpp |only duckdb-0.6.2/duckdb/src/duckdb/ub_src_execution_operator_helper.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_execution_operator_schema.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_execution_physical_plan.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_function.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_function_scalar_date.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_function_scalar_string.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/ub_src_function_table_system.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_main.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/ub_src_optimizer.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/ub_src_optimizer_join_order.cpp | 8 duckdb-0.6.2/duckdb/src/duckdb/ub_src_parser_parsed_data.cpp | 12 duckdb-0.6.2/duckdb/src/duckdb/ub_src_parser_statement.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_parser_transform_statement.cpp | 4 duckdb-0.6.2/duckdb/src/duckdb/ub_src_planner_binder_statement.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_planner_expression.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_planner_expression_binder.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_planner_operator.cpp | 2 duckdb-0.6.2/duckdb/src/duckdb/ub_src_transaction.cpp | 2 duckdb-0.6.2/duckdb/src/include/rapi.hpp | 8 duckdb-0.6.2/duckdb/src/register.cpp | 6 duckdb-0.6.2/duckdb/src/relational.cpp | 46 duckdb-0.6.2/duckdb/src/scan.cpp | 14 duckdb-0.6.2/duckdb/src/statement.cpp | 34 duckdb-0.6.2/duckdb/src/transform.cpp | 50 duckdb-0.6.2/duckdb/src/types.cpp | 5 duckdb-0.6.2/duckdb/src/utils.cpp | 8 duckdb-0.6.2/duckdb/tests/testthat/test-DBItest.R | 1 duckdb-0.6.2/duckdb/tests/testthat/test_arrow.R | 2 duckdb-0.6.2/duckdb/tests/testthat/test_arrow_stream.R | 16 duckdb-0.6.2/duckdb/tests/testthat/test_backend-dbplyr__duckdb_connection.R | 4 duckdb-0.6.2/duckdb/tests/testthat/test_config_keyvalue.R | 1 duckdb-0.6.2/duckdb/tests/testthat/test_extensions.R | 49 duckdb-0.6.2/duckdb/tests/testthat/test_factor.R | 2 duckdb-0.6.2/duckdb/tests/testthat/test_fetch.R | 2 duckdb-0.6.2/duckdb/tests/testthat/test_fetch_arrow.R | 4 duckdb-0.6.2/duckdb/tests/testthat/test_integer64.R | 2 duckdb-0.6.2/duckdb/tests/testthat/test_interval.R | 29 duckdb-0.6.2/duckdb/tests/testthat/test_register.R | 15 duckdb-0.6.2/duckdb/tests/testthat/test_register_arrow.R | 24 duckdb-0.6.2/duckdb/tests/testthat/test_relational.R | 125 duckdb-0.6.2/duckdb/tests/testthat/test_struct.R | 1 1131 files changed, 29623 insertions(+), 24322 deletions(-)