Title: Preliminary Visualisation of Data
Description: Create preliminary exploratory data visualisations of an entire
dataset to identify problems or unexpected features using 'ggplot2'.
Author: Nicholas Tierney [aut, cre] ,
Sean Hughes [rev] ,
Mara Averick [rev] ,
Stuart Lee [ctb],
Earo Wang [ctb],
Nic Crane [ctb],
Christophe Regouby [ctb]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
Diff between visdat versions 0.5.3 dated 2019-02-15 and 0.6.0 dated 2023-02-01
visdat-0.5.3/visdat/man/add_vis_dat_pal.Rd |only visdat-0.5.3/visdat/man/all_numeric.Rd |only visdat-0.5.3/visdat/man/compare_print.Rd |only visdat-0.5.3/visdat/man/expect_frame.Rd |only visdat-0.5.3/visdat/man/expect_guide_label.Rd |only visdat-0.5.3/visdat/man/fingerprint.Rd |only visdat-0.5.3/visdat/man/gather_cor.Rd |only visdat-0.5.3/visdat/man/guess_type.Rd |only visdat-0.5.3/visdat/man/label_col_missing_pct.Rd |only visdat-0.5.3/visdat/man/miss_guide_label.Rd |only visdat-0.5.3/visdat/man/test_if_dataframe.Rd |only visdat-0.5.3/visdat/man/vis_create_.Rd |only visdat-0.5.3/visdat/man/vis_extract_value_.Rd |only visdat-0.5.3/visdat/man/vis_gather_.Rd |only visdat-0.5.3/visdat/tests/figs |only visdat-0.5.3/visdat/tests/testthat/fontconfig-helper.R |only visdat-0.6.0/visdat/DESCRIPTION | 24 visdat-0.6.0/visdat/MD5 | 211 ++- visdat-0.6.0/visdat/NAMESPACE | 17 visdat-0.6.0/visdat/NEWS.md | 30 visdat-0.6.0/visdat/R/abbreviate.R |only visdat-0.6.0/visdat/R/data-binary-data.R |only visdat-0.6.0/visdat/R/data-vis-cor.R |only visdat-0.6.0/visdat/R/data-vis-dat.R |only visdat-0.6.0/visdat/R/data-vis-miss.R |only visdat-0.6.0/visdat/R/internals.R | 350 ++++-- visdat-0.6.0/visdat/R/utils-pipe.R |only visdat-0.6.0/visdat/R/vis-binary.R |only visdat-0.6.0/visdat/R/vis-compare.R | 26 visdat-0.6.0/visdat/R/vis-cor.R | 101 - visdat-0.6.0/visdat/R/vis-dat.R | 60 - visdat-0.6.0/visdat/R/vis-expect.R | 38 visdat-0.6.0/visdat/R/vis-guess.R | 9 visdat-0.6.0/visdat/R/vis-miss.R | 195 +-- visdat-0.6.0/visdat/R/vis-value.R |only visdat-0.6.0/visdat/R/visdat-package.r | 7 visdat-0.6.0/visdat/README.md | 173 ++- visdat-0.6.0/visdat/build/vignette.rds |binary visdat-0.6.0/visdat/data/dat_bin.rda |only visdat-0.6.0/visdat/inst/WORDLIST | 68 - visdat-0.6.0/visdat/inst/doc/customising-colour-palettes.R |only visdat-0.6.0/visdat/inst/doc/customising-colour-palettes.Rmd |only visdat-0.6.0/visdat/inst/doc/customising-colour-palettes.html |only visdat-0.6.0/visdat/inst/doc/using_visdat.R | 67 - visdat-0.6.0/visdat/inst/doc/using_visdat.Rmd | 53 visdat-0.6.0/visdat/inst/doc/using_visdat.html | 574 ++++++---- visdat-0.6.0/visdat/man/abbreviate_vars.Rd |only visdat-0.6.0/visdat/man/dat_bin.Rd |only visdat-0.6.0/visdat/man/data-vis-cor.Rd |only visdat-0.6.0/visdat/man/data-vis-dat.Rd |only visdat-0.6.0/visdat/man/data-vis-miss.Rd |only visdat-0.6.0/visdat/man/figures/README-iris-error-fix-1.png |only visdat-0.6.0/visdat/man/figures/README-vis-bin-1.png |only visdat-0.6.0/visdat/man/figures/README-vis-compare-iris-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-cor-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-dat-aq-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-dat-month-1.png |only visdat-0.6.0/visdat/man/figures/README-vis-expect-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-guess-messy-df-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-guess-messy-df-2.png |binary visdat-0.6.0/visdat/man/figures/README-vis-miss-aq-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-miss-aq-cluster-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-miss-aq-sort-miss-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-miss-mtcars-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-miss-test-1.png |binary visdat-0.6.0/visdat/man/figures/README-vis-value-1.png |only visdat-0.6.0/visdat/man/figures/visdat-logo.svg |only visdat-0.6.0/visdat/man/pipe.Rd |only visdat-0.6.0/visdat/man/typical_data.Rd | 6 visdat-0.6.0/visdat/man/typical_data_large.Rd | 6 visdat-0.6.0/visdat/man/vis_binary.Rd |only visdat-0.6.0/visdat/man/vis_compare.Rd | 2 visdat-0.6.0/visdat/man/vis_cor.Rd | 17 visdat-0.6.0/visdat/man/vis_dat.Rd | 25 visdat-0.6.0/visdat/man/vis_expect.Rd | 14 visdat-0.6.0/visdat/man/vis_miss.Rd | 46 visdat-0.6.0/visdat/man/vis_value.Rd |only visdat-0.6.0/visdat/man/visdat.Rd | 17 visdat-0.6.0/visdat/tests/testthat/_snaps |only visdat-0.6.0/visdat/tests/testthat/test-gather_funs.R |only visdat-0.6.0/visdat/tests/testthat/test-guess-type.R | 17 visdat-0.6.0/visdat/tests/testthat/test-test-vis-miss-one-col.R | 5 visdat-0.6.0/visdat/tests/testthat/test-vis-binary.R |only visdat-0.6.0/visdat/tests/testthat/test-vis-compare.R | 24 visdat-0.6.0/visdat/tests/testthat/test-vis-cor.R | 38 visdat-0.6.0/visdat/tests/testthat/test-vis-dat.R | 45 visdat-0.6.0/visdat/tests/testthat/test-vis-expect.R | 10 visdat-0.6.0/visdat/tests/testthat/test-vis-guess.R | 22 visdat-0.6.0/visdat/tests/testthat/test-vis-large.R | 13 visdat-0.6.0/visdat/tests/testthat/test-vis-miss.R | 59 - visdat-0.6.0/visdat/tests/testthat/test-vis-value.R |only visdat-0.6.0/visdat/tests/testthat/test-visdat-internals.R | 34 visdat-0.6.0/visdat/tests/testthat/test-vismiss-legend.R | 7 visdat-0.6.0/visdat/tests/testthat/test_variable_spaces.R | 6 visdat-0.6.0/visdat/vignettes/customising-colour-palettes.Rmd |only visdat-0.6.0/visdat/vignettes/using_visdat.Rmd | 53 96 files changed, 1637 insertions(+), 832 deletions(-)
Title: Power Analysis to Detect Spatial Relative Risk Clusters
Description: Calculate the statistical power to detect clusters using kernel-based
spatial relative risk functions that are estimated using the 'sparr' package.
Details about the 'sparr' package methods can be found in the tutorial: Davies
et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation
can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More
information about relative risk functions using kernel density estimation can
be found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] ,
Derek W. Brown [aut, cph] ,
Mitchell J. Machiela [ctb] ,
Timothy A. Myers [ctb],
NCI [cph, fnd]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between sparrpowR versions 0.2.6 dated 2022-12-02 and 0.2.7 dated 2023-02-01
DESCRIPTION | 19 MD5 | 64 - NAMESPACE | 92 +- NEWS.md | 182 ++--- R/globals.R | 2 R/jitter_power.R | 606 +++++++++--------- R/package.R | 106 +-- R/pval_correct.R | 116 +-- R/spatial_data.R | 558 ++++++++--------- R/spatial_plots.R | 478 +++++++------- R/spatial_power.R | 968 ++++++++++++++--------------- R/utils.R | 36 - R/zzz.R | 6 README.md | 412 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 48 - inst/doc/vignette.html | 1012 ++++++++++++++++++++----------- inst/doc/vignette.html.asis | 6 man/jitter_power.Rd | 198 +++--- man/pval_correct.Rd | 72 +- man/sparrpowR-package.Rd | 83 +- man/spatial_data.Rd | 228 +++--- man/spatial_plots.Rd | 162 ++-- man/spatial_power.Rd | 316 ++++----- tests/spelling.R | 6 tests/testthat.R | 20 tests/testthat/test-jitter_power.R | 152 ++-- tests/testthat/test-test-spatial_data.R | 276 ++++---- tests/testthat/test-test-spatial_plots.R | 134 ++-- tests/testthat/test-test-spatial_power.R | 440 ++++++------- vignettes/vignette.Rmd | 477 +++++++------- vignettes/vignette.html.asis | 6 33 files changed, 3802 insertions(+), 3479 deletions(-)
Title: Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Description: Create production-ready Rich Text Format (RTF) table and figure
with flexible format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [ctb],
Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>
Diff between r2rtf versions 1.0.0 dated 2023-01-11 and 1.0.1 dated 2023-02-01
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 ++++++- R/dictionary.R | 6 +++--- R/rtf_convert_format.R | 2 +- tests/testthat/test-independent-testing-content_create.R | 8 ++++---- 6 files changed, 22 insertions(+), 17 deletions(-)
Title: Environmental Interpolation using Spatial Kernel Density
Estimation
Description: Estimates an ecological niche using occurrence data, covariates, and kernel
density-based estimation methods. For a single species with presence and absence data,
the 'envi' package uses the spatial relative risk function that is estimated using the
'sparr' package. Details about the 'sparr' package methods can be found in the tutorial:
Davies et al. (2018) <doi:10.1002/sim.7577>. Details about kernel density estimation can
be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>. More information about
relative risk functions using kernel density estimation can be found in J. F. Bithell
(1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] ,
Lance A. Waller [ctb, ths] ,
Emory University [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between envi versions 0.1.15 dated 2022-08-30 and 0.1.17 dated 2023-02-01
DESCRIPTION | 18 MD5 | 84 - NAMESPACE | 130 +- NEWS.md | 149 +-- R/div_plot.R | 204 ++-- R/globals.R | 2 R/lrren.R | 722 +++++++------- R/package.R | 117 +- R/perlrren.R | 550 +++++------ R/plot_cv.R | 226 ++-- R/plot_obs.R | 344 +++---- R/plot_perturb.R | 595 ++++++------ R/plot_predict.R | 389 +++----- R/pval_correct.R | 116 +- R/seq_plot.R | 139 +- R/utils.R | 117 +- R/zzz.R | 6 README.md | 620 ++++++------ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 38 inst/doc/vignette.html | 1798 ++++++++++++++++++------------------- inst/doc/vignette.html.asis | 6 man/div_plot.Rd | 86 - man/envi-package.Rd | 90 - man/lrren.Rd | 306 +++--- man/perlrren.Rd | 258 ++--- man/plot_cv.Rd | 134 +- man/plot_obs.Rd | 170 +-- man/plot_perturb.Rd | 190 +-- man/plot_predict.Rd | 189 +-- man/pval_correct.Rd | 72 - man/seq_plot.Rd | 64 - tests/spelling.R | 6 tests/testthat.R | 20 tests/testthat/test-lrren.R | 674 ++++++------- tests/testthat/test-perlrren.R | 339 +++--- tests/testthat/test-plot_cv.R | 273 ++--- tests/testthat/test-plot_obs.R | 211 ++-- tests/testthat/test-plot_perturb.R | 213 ++-- tests/testthat/test-plot_predict.R | 311 +++--- vignettes/vignette.Rmd | 843 ++++++++--------- vignettes/vignette.html.asis | 6 43 files changed, 5433 insertions(+), 5392 deletions(-)
Title: Narrowest-Over-Threshold Change-Point Detection
Description: Provides efficient implementation of the Narrowest-Over-Threshold methodology for detecting an unknown number of change-points occurring at unknown locations in one-dimensional data following 'deterministic signal + noise' model. Currently implemented scenarios are: piecewise-constant signal, piecewise-constant signal with a heavy-tailed noise, piecewise-linear signal, piecewise-quadratic signal, piecewise-constant signal and with piecewise-constant variance of the noise. For details, see Baranowski, Chen and Fryzlewicz (2019) <doi:10.1111/rssb.12322>.
Author: Rafal Baranowski, Yining Chen, Piotr Fryzlewicz
Maintainer: Yining Chen <Y.Chen101@lse.ac.uk>
Diff between not versions 1.4 dated 2022-10-06 and 1.5 dated 2023-02-01
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/contrasts.c | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Description: Estimates statistically significant marker combination values within
which one immunologically distinctive group (i.e., disease case) is more associated than
another group (i.e., healthy control), successively, using various combinations (i.e.,
"gates") of markers to examine features of cells that may be different between
groups. For a two-group comparison, the 'gateR' package uses the spatial relative risk
function estimated using the 'sparr' package. Details about the 'sparr' package
methods can be found in the tutorial: Davies et al. (2018) <doi:10.1002/sim.7577>. Details
about kernel density estimation can be found in J. F. Bithell (1990) <doi:10.1002/sim.4780090616>.
More information about relative risk functions using kernel density estimation can be
found in J. F. Bithell (1991) <doi:10.1002/sim.4780101112>.
Author: Ian D. Buller [aut, cre, cph] ,
Elena Hsieh [ctb] ,
Debashis Ghosh [ctb] ,
Lance A. Waller [ctb] ,
NCI [cph]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between gateR versions 0.1.12 dated 2022-12-01 and 0.1.13 dated 2023-02-01
DESCRIPTION | 14 MD5 | 68 - NAMESPACE | 77 - NEWS.md | 137 +-- R/gating.R | 582 +++++++-------- R/lotrrs.R | 646 ++++++++-------- R/lrr_plot.R | 210 ++--- R/package.R | 94 +- R/pval_correct.R | 296 +++---- R/pval_plot.R | 68 - R/randCyto.R | 38 R/rrs.R | 486 ++++++------ R/utils.R | 4 R/zzz.R | 6 README.md | 532 ++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 38 inst/doc/vignette.html | 1657 +++++++++++++++++++++---------------------- inst/doc/vignette.html.asis | 6 man/gateR-package.Rd | 78 +- man/gating.Rd | 234 +++--- man/lotrrs.Rd | 192 ++-- man/lrr_plot.Rd | 86 +- man/pval_correct.Rd | 86 +- man/pval_plot.Rd | 52 - man/randCyto.Rd | 64 - man/rrs.Rd | 174 ++-- tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/test-gating.R | 344 ++++---- tests/testthat/test-lotrrs.R | 148 +-- tests/testthat/test-rrs.R | 104 +- vignettes/vignette.Rmd | 804 ++++++++++---------- vignettes/vignette.html.asis | 6 35 files changed, 3680 insertions(+), 3665 deletions(-)
Title: Schedule R Scripts and Processes with the Windows Task Scheduler
Description: Schedule R scripts/processes with the Windows task scheduler. This
allows R users to automate R processes on specific time points from R itself.
Author: Jan Wijffels [aut, cre, cph],
BNOSAC [cph],
Oliver Belmans [cph, aut]
Maintainer: Jan Wijffels <jwijffels@bnosac.be>
Diff between taskscheduleR versions 1.6 dated 2022-03-16 and 1.7 dated 2023-02-01
DESCRIPTION | 8 - MD5 | 14 +-- R/taskscheduleR.R | 4 README.md | 5 - inst/NEWS | 3 inst/doc/taskscheduleR.html | 129 +++++++++++++++-------------- man/taskscheduler_create.Rd | 3 tests/testthat/test-taskscheduler_create.R | 6 - 8 files changed, 96 insertions(+), 76 deletions(-)
Title: Call 'EPANET' Functions to Simulate Pipe Networks
Description: Enables simulation of water piping networks using 'EPANET'.
The package provides functions from the 'EPANET' programmer's toolkit as R
functions so that basic or customized simulations can be carried out from R.
The package uses 'EPANET' version 2.2 from Open Water Analytics
<https://github.com/OpenWaterAnalytics/EPANET/releases/tag/v2.2>.
Author: Ernesto Arandia [aut],
Bradley Eck [aut, cre],
Lew Rossman [aut],
Michael Tryby [ctb],
Sam Hatchett [ctb],
Feng Shang [ctb],
James Uber [ctb],
Tom Taxon [ctb],
Hyoungmin Woo [ctb],
Jinduan Chen [ctb],
Yunier Soad [ctb],
Mike Kane [ctb],
Demetrios Eli [...truncated...]
Maintainer: Bradley Eck <brad@bradeck.net>
Diff between epanet2toolkit versions 0.5.1 dated 2021-04-22 and 0.6.2 dated 2023-02-01
epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/Net1-ld.rpt |only epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/Net1.rpt |only epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/Net2.rpt |only epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/Net3.bin |only epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/n3.rpt |only epanet2toolkit-0.5.1/epanet2toolkit/tests/testthat/net3.rpt |only epanet2toolkit-0.6.2/epanet2toolkit/DESCRIPTION | 8 epanet2toolkit-0.6.2/epanet2toolkit/MD5 | 48 +- epanet2toolkit-0.6.2/epanet2toolkit/README.md | 19 - epanet2toolkit-0.6.2/epanet2toolkit/src/Repanet2.c | 12 epanet2toolkit-0.6.2/epanet2toolkit/src/epanet.c | 12 epanet2toolkit-0.6.2/epanet2toolkit/src/epanet2.c | 26 - epanet2toolkit-0.6.2/epanet2toolkit/src/epanet2.h | 22 - epanet2toolkit-0.6.2/epanet2toolkit/src/filemanager.c | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/filemanager.h | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/hash.c | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/hydsolver.c | 8 epanet2toolkit-0.6.2/epanet2toolkit/src/inpfile.c | 42 +- epanet2toolkit-0.6.2/epanet2toolkit/src/input1.c | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/input2.c | 8 epanet2toolkit-0.6.2/epanet2toolkit/src/mempool.c | 4 epanet2toolkit-0.6.2/epanet2toolkit/src/mempool.h | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/project.c | 2 epanet2toolkit-0.6.2/epanet2toolkit/src/report.c | 178 +++++----- epanet2toolkit-0.6.2/epanet2toolkit/src/rules.c | 21 - epanet2toolkit-0.6.2/epanet2toolkit/src/toolkit.c | 16 epanet2toolkit-0.6.2/epanet2toolkit/src/toolkit.h | 16 epanet2toolkit-0.6.2/epanet2toolkit/tests/testthat/test_links.r | 31 + 28 files changed, 264 insertions(+), 219 deletions(-)
More information about epanet2toolkit at CRAN
Permanent link
Title: A Tidy API for Graph Manipulation
Description: A graph, while not "tidy" in itself, can be thought of as two tidy
data frames describing node and edge data respectively. 'tidygraph'
provides an approach to manipulate these two virtual data frames using the
API defined in the 'dplyr' package, as well as provides tidy interfaces to
a lot of common graph algorithms.
Author: Thomas Lin Pedersen [cre, aut]
Maintainer: Thomas Lin Pedersen <thomasp85@gmail.com>
Diff between tidygraph versions 1.2.2 dated 2022-08-22 and 1.2.3 dated 2023-02-01
DESCRIPTION | 11 +++++------ MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/centrality.R | 7 +++---- README.md | 24 ++++++++++++------------ man/bind_graphs.Rd | 2 +- man/centrality.Rd | 5 +---- man/graph_join.Rd | 41 ++++++++++++++++++++++++++--------------- man/reexports.Rd | 2 +- tests/testthat/test-group.R | 2 +- 10 files changed, 63 insertions(+), 53 deletions(-)
Title: Pipe-Friendly Framework for Basic Statistical Tests
Description: Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy,
for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses.
The output of each test is automatically transformed into a tidy data frame to facilitate visualization.
Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix.
Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs
(repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs.
It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and
'Cramer V' for the association between categorical variables.
The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances.
Author: Alboukadel Kassambara [aut, cre]
Maintainer: Alboukadel Kassambara <alboukadel.kassambara@gmail.com>
Diff between rstatix versions 0.7.1 dated 2022-11-09 and 0.7.2 dated 2023-02-01
DESCRIPTION | 10 +++--- MD5 | 57 ++++++++++++++++++------------------- NEWS.md | 12 +++++++ R/emmeans_test.R | 18 ++++++++++- man/anova_test.Rd | 6 +-- man/binom_test.Rd | 8 ++--- man/chisq_test.Rd | 18 +++++------ man/cor_mat.Rd | 8 ++--- man/cor_reshape.Rd | 6 +-- man/cor_test.Rd | 4 +- man/df_label_value.Rd | 6 +-- man/df_unite.Rd | 8 ++--- man/emmeans_test.Rd | 4 +- man/eta_squared.Rd | 6 +-- man/factors.Rd | 8 ++--- man/fisher_test.Rd | 8 ++--- man/get_pvalue_position.Rd | 10 +++--- man/get_test_label.Rd | 12 +++---- man/mcnemar_test.Rd | 6 +-- man/outliers.Rd | 8 ++--- man/p_value.Rd | 14 ++++----- man/prop_test.Rd | 8 ++--- man/pull_triangle.Rd | 8 ++--- man/replace_triangle.Rd | 8 ++--- man/shapiro_test.Rd | 6 +-- man/sign_test.Rd | 6 +-- man/t_test.Rd | 6 +-- man/tukey_hsd.Rd | 8 ++--- man/wilcox_test.Rd | 6 +-- tests/testthat/test-emmeans_test.R |only 30 files changed, 160 insertions(+), 133 deletions(-)
Title: Morphometric Maps, Bone Landmarking and Cross Sectional Geometry
Description: Extract cross sections from long bone meshes at specified intervals along the diaphysis. Calculate two and three-dimensional morphometric maps, cross-sectional geometric parameters, and semilandmarks on the periosteal and endosteal contours of each cross section.
Author: Antonio Profico [aut, cre],
Luca Bondioli [aut],
Pasquale Raia [aut],
Julien Claude [ctb],
Paul O'Higgins [aut],
Damiano Marchi [aut]
Maintainer: Antonio Profico <antonio.profico@gmail.com>
Diff between morphomap versions 1.3 dated 2020-12-16 and 1.4 dated 2023-02-01
DESCRIPTION | 10 +++++----- MD5 | 23 +++++++++++++++++------ NAMESPACE | 7 ++++++- R/Ex_mpShapeList.R |only R/morphomap.R | 4 ++-- R/morphomap2Dmap.R | 1 + R/morphomapCheck.R | 2 +- R/morphomapExport.R |only R/morphomapImport.R |only R/morphomapPCA.R |only R/morphomapVariations.R |only data/Ex_mpShapeList.rda |only data/datalist | 1 + man/Ex_mpShapeList.Rd |only man/morphomapExport.Rd |only man/morphomapImport.Rd |only man/morphomapPCA.Rd |only man/morphomapVariations.Rd |only 18 files changed, 33 insertions(+), 15 deletions(-)
Title: Handling an Inconsistently Coded Categorical Variable in a
Longitudinal Dataset
Description: Unifying an inconsistently coded categorical variable between two different time points in accordance with a mapping table.
The main rule is to replicate the observation if it could be assigned to a few categories.
Then using frequencies or statistical methods to approximate the probabilities of being assigned to each of them.
This procedure was invented and implemented in the paper by Nasinski, Majchrowska, and Broniatowska (2020) <doi:10.24425/cejeme.2020.134747>.
Author: Maciej Nasinski [aut, cre]
Maintainer: Maciej Nasinski <nasinski.maciej@gmail.com>
Diff between cat2cat versions 0.4.5 dated 2022-09-25 and 0.4.6 dated 2023-02-01
cat2cat-0.4.5/cat2cat/tests/testthat/test-utils.R |only cat2cat-0.4.6/cat2cat/DESCRIPTION | 27 cat2cat-0.4.6/cat2cat/LICENSE |only cat2cat-0.4.6/cat2cat/MD5 | 49 cat2cat-0.4.6/cat2cat/NEWS.md | 10 cat2cat-0.4.6/cat2cat/R/cat2cat.R | 10 cat2cat-0.4.6/cat2cat/R/cat2cat_agg.R | 73 - cat2cat-0.4.6/cat2cat/R/data.R | 15 cat2cat-0.4.6/cat2cat/R/mapping.R | 4 cat2cat-0.4.6/cat2cat/R/plot_cat2cat.R | 8 cat2cat-0.4.6/cat2cat/inst/doc/cat2cat.R | 141 +- cat2cat-0.4.6/cat2cat/inst/doc/cat2cat.Rmd | 145 +- cat2cat-0.4.6/cat2cat/inst/doc/cat2cat.html | 670 +++++----- cat2cat-0.4.6/cat2cat/man/cat2cat.Rd | 7 cat2cat-0.4.6/cat2cat/man/cat2cat_agg.Rd | 27 cat2cat-0.4.6/cat2cat/man/get_freqs.Rd | 4 cat2cat-0.4.6/cat2cat/man/verticals2.Rd | 15 cat2cat-0.4.6/cat2cat/tests/testthat.R | 10 cat2cat-0.4.6/cat2cat/tests/testthat/Rplots.pdf |binary cat2cat-0.4.6/cat2cat/tests/testthat/setup.R |only cat2cat-0.4.6/cat2cat/tests/testthat/test-cat2cat-internal-utils.R |only cat2cat-0.4.6/cat2cat/tests/testthat/test-cat2cat-utils.R |only cat2cat-0.4.6/cat2cat/tests/testthat/test-cat2cat.R | 455 +++--- cat2cat-0.4.6/cat2cat/tests/testthat/test-cat2cat_agg.R | 95 + cat2cat-0.4.6/cat2cat/tests/testthat/test-lms.R | 61 cat2cat-0.4.6/cat2cat/tests/testthat/test-multi-cat2cat.R | 7 cat2cat-0.4.6/cat2cat/tests/testthat/test-plot.R | 17 cat2cat-0.4.6/cat2cat/vignettes/cat2cat.Rmd | 145 +- 28 files changed, 1170 insertions(+), 825 deletions(-)
Title: Uniform Manifold Approximation and Projection
Description: Uniform manifold approximation and projection is a technique
for dimension reduction. The algorithm was described by McInnes and
Healy (2018) in <arXiv:1802.03426>. This package provides an interface
for two implementations. One is written from scratch, including components
for nearest-neighbor search and for embedding. The second implementation
is a wrapper for 'python' package 'umap-learn' (requires separate
installation, see vignette for more details).
Author: Tomasz Konopka [aut, cre]
Maintainer: Tomasz Konopka <tokonopka@gmail.com>
Diff between umap versions 0.2.9.0 dated 2022-08-25 and 0.2.10.0 dated 2023-02-01
DESCRIPTION | 6 - MD5 | 36 ++++---- R/umap.R | 14 +-- R/umap_checks.R | 10 +- R/umap_learn.R | 5 - R/umap_naive.R | 3 inst/doc/umap.R | 9 +- inst/doc/umap.Rmd | 193 ++++++++++++++++++++++++++++++++----------- inst/doc/umap.html | 49 +++++----- inst/doc/umap_learn.Rmd | 70 +++++++++++---- inst/doc/umap_learn.html | 8 - tests/testthat/test_checks.R | 50 +++++------ tests/testthat/test_config.R | 13 +- tests/testthat/test_knn.R | 4 tests/testthat/test_naive.R | 15 +++ tests/testthat/test_python.R | 17 +++ tests/testthat/test_rcpp.R | 2 vignettes/umap.Rmd | 193 ++++++++++++++++++++++++++++++++----------- vignettes/umap_learn.Rmd | 70 +++++++++++---- 19 files changed, 534 insertions(+), 233 deletions(-)
Title: Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
Description: Lp_solve is freely available (under LGPL 2) software for
solving linear, integer and mixed integer programs. In this
implementation we supply a "wrapper" function in C and some R
functions that solve general linear/integer problems,
assignment problems, and transportation problems. This version
calls lp_solve version 5.5.
Author: Michel Berkelaar and others
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between lpSolve versions 5.6.17 dated 2022-10-10 and 5.6.18 dated 2023-02-01
DESCRIPTION | 6 +++--- MD5 | 34 +++++++++++++++++----------------- R/lp.R | 9 ++++++--- man/lp.Rd | 4 +++- src/hbio.c | 20 ++++++++++---------- src/init.c | 4 ++-- src/lp_MPS.c | 20 ++++++++++---------- src/lp_lib.c | 12 ++++++------ src/lp_mipbb.c | 2 +- src/lp_params.c | 6 +++--- src/lp_presolve.c | 10 +++++----- src/lp_rlp.c | 4 ++-- src/lp_types.h | 1 - src/lpslink56.c | 8 ++++++-- src/lusol.c | 2 +- src/mmio.c | 3 ++- src/yacc_read.c | 28 ++++++++++++++-------------- src/yacc_read.h | 4 ++-- 18 files changed, 93 insertions(+), 84 deletions(-)
Title: 3D-Visualization of Geoelectric Resistivity Measurement Profiles
Description: Visualizes two-dimensional geoelectric resistivity measurement profiles in three dimensions.
Author: Anja Kleebaum <kleebaum@informatik.uni-heidelberg.de>
Maintainer: Anja Kleebaum <kleebaum@informatik.uni-heidelberg.de>
Diff between geoelectrics versions 0.2.0 dated 2018-08-28 and 0.2.2 dated 2023-02-01
DESCRIPTION | 8 MD5 | 37 - NAMESPACE | 2 NEWS.md |only R/geoelectrics.r | 15 R/geoelectricsGui.r |only R/levelplot.r | 41 + R/levelplotProcessedData.r | 4 R/levelplotRawData.r | 2 R/plot.r | 41 + R/plot3d.r | 11 data/sinkhole.RData |binary inst/gui/config | 6 inst/gui/gui.r | 859 ++++++++++++++++++++++++++-------------- man/geoelectrics-package.Rd |only man/geoelectricsGui.Rd |only man/levelplot.Rd | 17 man/plot.Rd | 5 man/sinkhole.Rd | 46 +- tests/testthat/test_gui.r |only tests/testthat/test_levelplot.r | 6 tests/testthat/test_plot.r | 6 22 files changed, 768 insertions(+), 338 deletions(-)
Title: Non Metric Space (Approximate) Library
Description: A Non-Metric Space Library ('NMSLIB' <https://github.com/nmslib/nmslib>) wrapper, which according to the authors "is an efficient cross-platform similarity search library and a toolkit for evaluation of similarity search methods. The goal of the 'NMSLIB' <https://github.com/nmslib/nmslib> Library is to create an effective and comprehensive toolkit for searching in generic non-metric spaces. Being comprehensive is important, because no single method is likely to be sufficient in all cases. Also note that exact solutions are hardly efficient in high dimensions and/or non-metric spaces. Hence, the main focus is on approximate methods". The wrapper also includes Approximate Kernel k-Nearest-Neighbor functions based on the 'NMSLIB' <https://github.com/nmslib/nmslib> 'Python' Library.
Author: Lampros Mouselimis [aut, cre] ,
B. Naidan [cph] ),
L. Boytsov [cph] ),
Yu. Malkov [cph] ),
B. Frederickson [cph] ),
D. Novak [cph] )
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between nmslibR versions 1.0.6 dated 2021-09-11 and 1.0.7 dated 2023-02-01
DESCRIPTION | 17 - MD5 | 28 +- NAMESPACE | 2 NEWS.md | 8 R/RcppModule.R | 1 R/nmslib.R | 256 ++++++++++++----------- R/package.R | 12 - README.md | 6 build/vignette.rds |binary inst/doc/the_nmslibR_package.html | 419 ++++++++++++++++++++++++++++++-------- man/KernelKnn_nmslib.Rd | 6 man/NMSlib.Rd | 33 ++ src/Makevars | 3 src/Makevars.win | 2 src/utils.cpp | 17 - 15 files changed, 561 insertions(+), 249 deletions(-)
Title: Wrapper for 'Visa Chart Components'
Description: Provides a set of wrapper functions for 'Visa Chart Components'.
'Visa Chart Components' <https://github.com/visa/visa-chart-components> is an accessibility focused,
framework agnostic set of data experience design systems components for the web.
Author: Christopher DeMartini [aut, cre],
Stephanie Modica [aut],
David Kutas [aut],
Jaime Tanner [aut],
Frank Elavsky [aut],
Wojtek Kostelecki [ctb],
Visa Data Experience Team [aut, fnd],
Visa, Inc. [cph]
Maintainer: Christopher DeMartini <chris.demartini.npm@gmail.com>
Diff between visachartR versions 2.2.0 dated 2023-01-20 and 3.0.0 dated 2023-02-01
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Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
RStudio, PBC [cph],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.43 dated 2022-12-13 and 0.44 dated 2023-02-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + R/install.R | 16 +++++++++------- R/latex.R | 2 +- R/package.R | 2 +- R/tlmgr.R | 2 +- inst/CITATION | 21 +++++++-------------- 8 files changed, 31 insertions(+), 35 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 3.6.0 dated 2022-09-05 and 3.6.1 dated 2023-02-01
DESCRIPTION | 16 MD5 | 44 NAMESPACE | 9 NEWS.md | 3 R/ModelFrame.R | 2 R/ModelSpecification.R | 8 R/fit.R | 4 R/plot.R | 85 R/recipe_roles.R | 59 R/resample.R | 4 R/rfe.R | 5 R/step_lincomp.R | 2 R/step_sbf.R | 2 R/utils.R | 2 build/vignette.rds |binary inst/doc/MLModels.html | 252 + inst/doc/UserGuide.html | 4838 +++++++++++++++++++++++--------------- man/ModelSpecification-methods.Rd | 6 man/fit-methods.Rd | 4 man/resample-methods.Rd | 4 man/rfe-methods.Rd | 4 tests/testthat/Rplots.pdf |binary tests/testthat/test-survival.txt | 3974 +++++++++++++++---------------- 23 files changed, 5222 insertions(+), 4105 deletions(-)
Title: Tools and Data for the International Soil Radiocarbon Database
Description: This is the central location for data and tools for the development,
maintenance, analysis, and deployment of the International Soil Radiocarbon Database
(ISRaD). ISRaD was developed as a collaboration between the U.S. Geological Survey
Powell Center and the Max Planck Institute for Biogeochemistry. This R package provides
tools for accessing and manipulating ISRaD data, compiling local data using the ISRaD
data structure, and simple query and reporting functions for ISRaD. For more detailed
information visit the ISRaD website at: <https://soilradiocarbon.org/>.
Author: Alison Hoyt [aut],
Jeffrey Beem-Miller [aut, cre],
Shane Stoner [aut],
J. Grey Monroe [aut],
Caitlin Hicks-Pries [aut],
Paul A. Levine [aut]
Maintainer: Jeffrey Beem-Miller <jbeem@bgc-jena.mpg.de>
Diff between ISRaD versions 1.7.8 dated 2021-01-06 and 2.4.7 dated 2023-02-01
ISRaD-1.7.8/ISRaD/NEWS.md |only ISRaD-1.7.8/ISRaD/R/ISRaD.extra.fill_14c.R |only ISRaD-1.7.8/ISRaD/R/ISRaD.extra.fill_fm.R |only ISRaD-1.7.8/ISRaD/man/ISRaD.extra.fill_14c.Rd |only ISRaD-1.7.8/ISRaD/man/ISRaD.extra.fill_fm.Rd |only ISRaD-2.4.7/ISRaD/DESCRIPTION | 12 - ISRaD-2.4.7/ISRaD/MD5 | 94 ++++---- ISRaD-2.4.7/ISRaD/NAMESPACE | 15 + ISRaD-2.4.7/ISRaD/R/Graven.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.extra.Cstocks.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.extra.R | 14 - ISRaD-2.4.7/ISRaD/R/ISRaD.extra.calc_atm14c.R |only ISRaD-2.4.7/ISRaD/R/ISRaD.extra.delta_delta.R | 113 ++-------- ISRaD-2.4.7/ISRaD/R/ISRaD.extra.fill_CN.R |only ISRaD-2.4.7/ISRaD/R/ISRaD.extra.fill_country.R |only ISRaD-2.4.7/ISRaD/R/ISRaD.extra.fill_dates.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.extra.fill_rc.R |only ISRaD-2.4.7/ISRaD/R/ISRaD.extra.geospatial.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.extra.geospatial.keys.R | 10 ISRaD-2.4.7/ISRaD/R/ISRaD.extra.norm14c_year.R |only ISRaD-2.4.7/ISRaD/R/ISRaD.flatten.R | 8 ISRaD-2.4.7/ISRaD/R/ISRaD.getdata.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.read.entry.R | 6 ISRaD-2.4.7/ISRaD/R/ISRaD.rep.count.all.R | 5 ISRaD-2.4.7/ISRaD/R/ISRaD.rep.site.map.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.report.R | 2 ISRaD-2.4.7/ISRaD/R/ISRaD.save.entry.R | 3 ISRaD-2.4.7/ISRaD/R/QAQC.R | 75 +++++- ISRaD-2.4.7/ISRaD/R/compile.R | 75 +++--- ISRaD-2.4.7/ISRaD/R/convert_fm_d14c.R | 6 ISRaD-2.4.7/ISRaD/R/future14C.R | 2 ISRaD-2.4.7/ISRaD/build |only ISRaD-2.4.7/ISRaD/inst/extdata/ISRaD_Master_Template.xlsx |binary ISRaD-2.4.7/ISRaD/inst/extdata/ISRaD_Template_Info.xlsx |binary ISRaD-2.4.7/ISRaD/inst/extdata/geodata_keys/landCover_0.5_x_x_deg_MODIS.csv | 2 ISRaD-2.4.7/ISRaD/inst/extdata/geodata_keys/soilOrder_0.5_x_x_deg_USDA.csv | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.extra.Cstocks.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.extra.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.extra.calc_atm14c.Rd |only ISRaD-2.4.7/ISRaD/man/ISRaD.extra.delta_delta.Rd | 21 - ISRaD-2.4.7/ISRaD/man/ISRaD.extra.fill_CN.Rd |only ISRaD-2.4.7/ISRaD/man/ISRaD.extra.fill_country.Rd |only ISRaD-2.4.7/ISRaD/man/ISRaD.extra.fill_dates.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.extra.fill_rc.Rd |only ISRaD-2.4.7/ISRaD/man/ISRaD.extra.geospatial.keys.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.extra.norm14c_year.Rd |only ISRaD-2.4.7/ISRaD/man/ISRaD.flatten.Rd | 6 ISRaD-2.4.7/ISRaD/man/ISRaD.read.entry.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.rep.count.all.Rd | 3 ISRaD-2.4.7/ISRaD/man/ISRaD.rep.site.map.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.report.Rd | 2 ISRaD-2.4.7/ISRaD/man/ISRaD.save.entry.Rd | 3 ISRaD-2.4.7/ISRaD/man/QAQC.Rd | 7 ISRaD-2.4.7/ISRaD/man/convert_fm_d14c.Rd | 4 ISRaD-2.4.7/ISRaD/man/future14C.Rd | 2 ISRaD-2.4.7/ISRaD/man/graven.Rd | 2 56 files changed, 266 insertions(+), 252 deletions(-)
Title: The Machine Learning and AI Modeling Companion to 'healthyR'
Description: Hospital machine learning and ai data analysis workflow tools, modeling, and automations.
This library provides many useful tools to review common administrative
hospital data. Some of these include predicting length of stay, and readmits.
The aim is to provide a simple and consistent verb framework that takes the
guesswork out of everything.
Author: Steven Sanderson [aut, cre, cph]
Maintainer: Steven Sanderson <spsanderson@gmail.com>
Diff between healthyR.ai versions 0.0.11 dated 2023-01-12 and 0.0.12 dated 2023-02-01
DESCRIPTION | 6 - MD5 | 16 +- NEWS.md | 12 ++ R/umap-list.R | 228 +++++++++++++++++++-------------------- inst/doc/auto-kmeans.html | 4 inst/doc/getting-started.html | 166 ++++++++++++++-------------- inst/doc/kmeans-umap.html | 34 ++--- man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary 9 files changed, 239 insertions(+), 227 deletions(-)
Title: Measuring Information Flow Between Time Series with Shannon and
Renyi Transfer Entropy
Description: Measuring information flow between time series with Shannon and Rényi transfer entropy. See also Dimpfl and Peter (2013) <doi:10.1515/snde-2012-0044> and Dimpfl and Peter (2014) <doi:10.1016/j.intfin.2014.03.004> for theory and applications to financial time series. Additional references can be found in the theory part of the vignette.
Author: David Zimmermann [aut, cre],
Simon Behrendt [aut],
Thomas Dimpfl [aut],
Franziska Peter [aut]
Maintainer: David Zimmermann <david_j_zimmermann@hotmail.com>
Diff between RTransferEntropy versions 0.2.14 dated 2021-04-02 and 0.2.21 dated 2023-02-01
DESCRIPTION | 8 MD5 | 40 R/RcppExports.R | 30 R/markov_boot_step.R | 81 - R/te_shannon.R | 148 +- R/transfer_entropy.R | 647 ++++----- README.md | 609 ++++----- build/vignette.rds |binary inst/CITATION | 30 inst/doc/transfer-entropy.R | 672 +++++----- inst/doc/transfer-entropy.Rmd | 1342 ++++++++++---------- inst/doc/transfer-entropy.html | 1940 ++++++++++++++++++----------- man/transfer_entropy.Rd | 3 src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 5 src/calculate_transition_probabilities.cpp | 9 src/cluster_gen.cpp | 2 src/freq_table.cpp | 4 tests/testthat/test.transfer_entropy.R | 422 +++--- vignettes/transfer-entropy.Rmd | 1342 ++++++++++---------- 21 files changed, 3987 insertions(+), 3351 deletions(-)
More information about RTransferEntropy at CRAN
Permanent link
Title: Client Library for SpatioTemporal Asset Catalog
Description: Provides functions to access, search and download spacetime earth
observation data via SpatioTemporal Asset Catalog (STAC). This package
supports the version 1.0.0 (and older) of the STAC specification
(<https://github.com/radiantearth/stac-spec>).
For further details see Simoes et al. (2021) <doi:10.1109/IGARSS47720.2021.9553518>.
Author: Rolf Simoes [aut],
Felipe Carvalho [aut, cre],
Brazil Data Cube Team [aut],
National Institute for Space Research [cph]
Maintainer: Felipe Carvalho <lipecaso@gmail.com>
Diff between rstac versions 0.9.2-1 dated 2023-01-21 and 0.9.2-2 dated 2023-02-01
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- R/collections-query.R | 20 ++++++++++++-------- R/conformance-query.R | 5 ++++- R/extensions.R | 21 ++++++--------------- R/items-query.R | 17 ++++++++++------- R/query-funs.R | 14 ++++++++++++-- R/queryables-query.R | 5 ++++- R/signatures.R | 6 +++--- R/stac-query.R | 7 ++++++- README.md | 3 +-- inst/CITATION | 17 ++++++++--------- inst/doc/rstac-01-intro.html | 12 ++++++------ inst/doc/rstac-03-cql2-mpc.html | 10 +++++----- man/extensions.Rd | 7 +------ tests/testthat/test-internals.R | 10 ++++++---- 16 files changed, 102 insertions(+), 88 deletions(-)
Title: Semantically Rich I/O for the 'NeXML' Format
Description: Provides access to phyloinformatic data in 'NeXML' format. The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.
Author: Carl Boettiger [cre, aut] ,
Scott Chamberlain [aut] ,
Hilmar Lapp [aut] ,
Kseniia Shumelchyk [aut],
Rutger Vos [aut]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between RNeXML versions 2.4.10 dated 2023-01-09 and 2.4.11 dated 2023-02-01
DESCRIPTION | 6 ++--- MD5 | 39 ++++++++++++++++++++++++++++++++------ NEWS.md | 6 +++++ R/nexml_validate.R | 25 ++++-------------------- inst/xsd |only man/nexml_validate.Rd | 6 ++++- tests/testthat/test_serializing.R | 10 +++++++-- tests/testthat/test_validate.R | 7 ------ 8 files changed, 61 insertions(+), 38 deletions(-)
Title: Robust Estimation in Very Small Samples
Description: Implements the estimation techniques described in Rousseeuw &
Verboven (2002) <doi:10.1016/S0167-9473(02)00078-6> for the location and
scale of very small samples.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between revss versions 1.0.4 dated 2022-04-04 and 1.0.5 dated 2023-02-01
DESCRIPTION | 8 +++---- MD5 | 18 ++++++++--------- README.md | 16 +++++++-------- build/partial.rdb |binary inst/CITATION | 23 ++++++++-------------- inst/NEWS.Rd | 20 ++++++++++++++++++- inst/tinytest/test_revss.R | 47 +++++++++++++++++++++++---------------------- man/adm.Rd | 6 ++--- man/robLoc.Rd | 4 +++ man/robScale.Rd | 4 +++ 10 files changed, 85 insertions(+), 61 deletions(-)
Title: Rare Variant Analysis and Genetic Simulations
Description: Rare variant association tests: burden tests (Bocher et al. 2019 <doi:10.1002/gepi.22210>) and the Sequence Kernel Association Test (Bocher et al. 2021 <doi:10.1038/s41431-020-00792-8>) in the whole genome; and genetic simulations.
Author: Ozvan Bocher and Herve Perdry
Maintainer: Ozvan Bocher <bocherozvan@gmail.com>
Diff between Ravages versions 1.1.1 dated 2022-11-11 and 1.1.2 dated 2023-02-01
Ravages-1.1.1/Ravages/NEWS.md |only Ravages-1.1.2/Ravages/DESCRIPTION | 10 ++-- Ravages-1.1.2/Ravages/MD5 | 22 +++++----- Ravages-1.1.2/Ravages/NEWS |only Ravages-1.1.2/Ravages/R/RAVA_FIRST.r | 2 Ravages-1.1.2/Ravages/R/filter_adjustedCADD.r | 4 - Ravages-1.1.2/Ravages/inst/doc/Ravages_Simulations_vignette.pdf |binary Ravages-1.1.2/Ravages/inst/doc/Ravages_vignette.pdf |binary Ravages-1.1.2/Ravages/man/RAVA_FIRST.Rd | 3 + Ravages-1.1.2/Ravages/man/filter_adjustedCADD.Rd | 4 + Ravages-1.1.2/Ravages/src/Makevars | 2 Ravages-1.1.2/Ravages/src/Makevars.win | 2 Ravages-1.1.2/Ravages/src/rbm_haplos_thresholds_filling.cpp | 8 +-- 13 files changed, 31 insertions(+), 26 deletions(-)
Title: Rapidly Estimates Phylogeny from Large Allele Frequency Data
Using Root Distances Method
Description: Rapidly estimates tree-topology from large allele frequency
data using Root Distances Method, under a Brownian Motion Model. See
Peng et al. (2021) <doi:10.1016/j.ympev.2021.107142>.
Author: Arindam RoyChoudhury [aut, cre, cph],
Jing Peng [aut],
Ying Li [aut],
Laura Kubatko [aut, ths]
Maintainer: Arindam RoyChoudhury <arr2014@med.cornell.edu>
Diff between rapidphylo versions 0.1.1 dated 2022-12-19 and 0.1.2 dated 2023-02-01
DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/RDM.R | 10 ++++++---- R/data.R | 6 +++--- data/Human_Allele_Frequencies.RData |binary man/Human_Allele_Frequencies.Rd | 8 ++++---- man/RDM.Rd | 10 ++++++---- 8 files changed, 38 insertions(+), 27 deletions(-)
Title: Power and Sample Size for Health Researchers via Shiny
Description: Power and Sample Size for Health Researchers is a Shiny application that brings together a
series of functions related to sample size and power calculations for common analysis in the healthcare
field. There are functionalities to calculate the power, sample size to estimate or test hypotheses for means and
proportions (including test for correlated groups, equivalence, non-inferiority and superiority), association, correlations coefficients,
regression coefficients (linear, logistic and Cox), linear mixed model,
Cronbach's alpha, interobserver agreement, intraclass correlation coefficients,
limit of agreement on Bland-Altman plots,
area under the curve, sensitivity and specificity incorporating the prevalence of disease.
You can also use the online version at <https://hcpa-unidade-bioestatistica.shinyapps.io/PSS_Health/>.
Author: Rogerio Boff Borges [aut, cre]
,
Guilherme Serpa Azambuja [aut]
,
Aline Castello Branco Mancuso [aut]
,
Vanessa Bielefeldt Leotti [aut]
,
Vânia Naomi Hirakata [aut] ,
Suzi Alves Camey [aut] ,
Stela Maris de Jezus Castro [aut]
,
Hospital de Clinicas d [...truncated...]
Maintainer: Rogerio Boff Borges <roborges@hcpa.edu.br>
Diff between PSS.Health versions 0.5.1 dated 2022-07-06 and 0.6.1 dated 2023-02-01
PSS.Health-0.5.1/PSS.Health/inst/PSS.Health/www/Delta_two_groups_independents.Rmd |only PSS.Health-0.6.1/PSS.Health/DESCRIPTION | 10 PSS.Health-0.6.1/PSS.Health/MD5 | 59 PSS.Health-0.6.1/PSS.Health/R/PSS_Health.R | 3 PSS.Health-0.6.1/PSS.Health/build/vignette.rds |binary PSS.Health-0.6.1/PSS.Health/inst/CITATION | 9 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/mod_desvio_padrao_agrupado.R | 141 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_1_media.R | 187 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_2_medias_dependentes.R | 135 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_2_medias_independentes.R | 287 - PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_2_proporcoes_independentes.R | 161 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_anova_uma_via.R | 151 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_auc.R | 223 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_correlacao.R |only PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_cox.R | 205 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_kappa.R | 65 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_mc_nemar.R | 95 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_medidas_repetidas.R | 518 + PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_nao_inferioridade.R | 140 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_qui_quadrado.R | 56 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_regressao_linear.R | 473 - PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/modulo_regressao_logistica.R | 240 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/R/translation.R | 723 -- PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/global.R | 23 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/server.R | 2837 ++++------ PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/ui.R | 20 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/www/Teste_Mcnemar.Rmd | 7 PSS.Health-0.6.1/PSS.Health/inst/PSS.Health/www/Teste_Mcnemar_en.Rmd |only PSS.Health-0.6.1/PSS.Health/inst/doc/Vignettes.Rmd | 2 PSS.Health-0.6.1/PSS.Health/inst/doc/Vignettes.html | 6 PSS.Health-0.6.1/PSS.Health/man/PSS_Health.Rd | 3 PSS.Health-0.6.1/PSS.Health/vignettes/Vignettes.Rmd | 2 32 files changed, 2974 insertions(+), 3807 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.6.2 dated 2022-12-19 and 1.6.3 dated 2023-02-01
DESCRIPTION | 6 +- MD5 | 68 ++++++++++++++++----------------- NEWS.md | 5 ++ R/gg_area.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_bar.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_bin2d.R | 2 R/gg_blank.R | 2 R/gg_boxplot.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_col.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_crossbar.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_density.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_errorbar.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_freqpoly.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_function.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_hex.R | 2 R/gg_histogram.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_jitter.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_label.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_line.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_linerange.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_path.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_point.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_pointrange.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_polygon.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_qq.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_raster.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_rect.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_ribbon.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_segment.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_smooth.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_step.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_text.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_tile.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- R/gg_violin.R | 97 +++++++++++++++++++++++++++++++++++++++++++++++- inst/doc/ggblanket.html | 24 +++++------ 35 files changed, 2745 insertions(+), 80 deletions(-)
Title: Simple Fisheries Stock Assessment Methods
Description: A variety of simple fish stock assessment methods.
Author: Derek H. Ogle [aut, cre] ,
Jason C. Doll [aut],
A. Powell Wheeler [aut],
Alexis Dinno [aut] )
Maintainer: Derek H. Ogle <DerekOgle51@gmail.com>
Diff between FSA versions 0.9.3 dated 2022-02-18 and 0.9.4 dated 2023-02-01
FSA-0.9.3/FSA/inst/extdata/bootCase1.RData |only FSA-0.9.3/FSA/inst/helpers |only FSA-0.9.4/FSA/DESCRIPTION | 33 - FSA-0.9.4/FSA/MD5 | 304 ++++++------ FSA-0.9.4/FSA/NEWS.md | 451 ++++++++++++------- FSA-0.9.4/FSA/R/BluegillJL.R | 2 FSA-0.9.4/FSA/R/BrookTroutTH.R | 2 FSA-0.9.4/FSA/R/CIDists.R | 6 FSA-0.9.4/FSA/R/ChinookArg.R | 2 FSA-0.9.4/FSA/R/CodNorwegian.R | 2 FSA-0.9.4/FSA/R/CutthroatAL.R | 2 FSA-0.9.4/FSA/R/Ecoli.R | 2 FSA-0.9.4/FSA/R/FSA.R | 6 FSA-0.9.4/FSA/R/FSAUtils.R | 58 +- FSA-0.9.4/FSA/R/Mirex.R | 2 FSA-0.9.4/FSA/R/PSDlit.R | 2 FSA-0.9.4/FSA/R/PikeNY.R | 2 FSA-0.9.4/FSA/R/PikeNYPartial1.R | 2 FSA-0.9.4/FSA/R/SMBassLS.R | 2 FSA-0.9.4/FSA/R/SMBassWB.R | 2 FSA-0.9.4/FSA/R/SpotVA1.R | 2 FSA-0.9.4/FSA/R/Summarize.R | 4 FSA-0.9.4/FSA/R/WR79.R | 2 FSA-0.9.4/FSA/R/WSlit.R | 24 - FSA-0.9.4/FSA/R/WhitefishLC.R | 2 FSA-0.9.4/FSA/R/addZeroCatch.R | 6 FSA-0.9.4/FSA/R/ageComparisons.R | 16 FSA-0.9.4/FSA/R/alkIndivAge.R | 13 FSA-0.9.4/FSA/R/alkPlot.R | 4 FSA-0.9.4/FSA/R/alkSummaries.R | 10 FSA-0.9.4/FSA/R/bootstrap.R | 9 FSA-0.9.4/FSA/R/capHistConvert.R | 4 FSA-0.9.4/FSA/R/capHistSum.R | 4 FSA-0.9.4/FSA/R/catchCurve.R | 6 FSA-0.9.4/FSA/R/chapmanRobson.R | 10 FSA-0.9.4/FSA/R/depletion.R | 6 FSA-0.9.4/FSA/R/dunnTest.R | 4 FSA-0.9.4/FSA/R/expandCounts.R | 2 FSA-0.9.4/FSA/R/expandLenFreq.R | 2 FSA-0.9.4/FSA/R/extraTests.R | 4 FSA-0.9.4/FSA/R/growthModels.R | 10 FSA-0.9.4/FSA/R/hist.formula.R | 4 FSA-0.9.4/FSA/R/histFromSum.R | 2 FSA-0.9.4/FSA/R/knitUtil.R | 2 FSA-0.9.4/FSA/R/ksTest.R | 2 FSA-0.9.4/FSA/R/lencat.R | 4 FSA-0.9.4/FSA/R/lwCompPreds.R | 4 FSA-0.9.4/FSA/R/metaM.R | 22 FSA-0.9.4/FSA/R/mrClosed.R | 4 FSA-0.9.4/FSA/R/mrOpen.R | 10 FSA-0.9.4/FSA/R/nlsTracePlot.R | 2 FSA-0.9.4/FSA/R/psdAdd.R | 4 FSA-0.9.4/FSA/R/psdCI.R | 8 FSA-0.9.4/FSA/R/psdCalc.R | 79 ++- FSA-0.9.4/FSA/R/psdPlot.R | 6 FSA-0.9.4/FSA/R/psdVal.R | 6 FSA-0.9.4/FSA/R/removal.R | 4 FSA-0.9.4/FSA/R/srStarts.R | 6 FSA-0.9.4/FSA/R/stockRecruitment.R | 4 FSA-0.9.4/FSA/R/sumTable.R | 2 FSA-0.9.4/FSA/R/tictactoe.R | 4 FSA-0.9.4/FSA/R/vbStarts.R | 6 FSA-0.9.4/FSA/R/wrAdd.R | 6 FSA-0.9.4/FSA/R/wsVal.R | 64 +- FSA-0.9.4/FSA/data/PSDlit.rdata |binary FSA-0.9.4/FSA/data/WSlit.rdata |binary FSA-0.9.4/FSA/inst/CITATION | 18 FSA-0.9.4/FSA/inst/extdata/Boot1.RData |only FSA-0.9.4/FSA/inst/extdata/nlsBoot1.RData |binary FSA-0.9.4/FSA/man/BluegillJL.Rd | 2 FSA-0.9.4/FSA/man/BrookTroutTH.Rd | 2 FSA-0.9.4/FSA/man/ChinookArg.Rd | 2 FSA-0.9.4/FSA/man/CodNorwegian.Rd | 2 FSA-0.9.4/FSA/man/CutthroatAL.Rd | 2 FSA-0.9.4/FSA/man/Ecoli.Rd | 2 FSA-0.9.4/FSA/man/FSA.Rd | 4 FSA-0.9.4/FSA/man/Mirex.Rd | 2 FSA-0.9.4/FSA/man/PSDlit.Rd | 2 FSA-0.9.4/FSA/man/PikeNY.Rd | 2 FSA-0.9.4/FSA/man/PikeNYPartial1.Rd | 2 FSA-0.9.4/FSA/man/SMBassLS.Rd | 2 FSA-0.9.4/FSA/man/SMBassWB.Rd | 2 FSA-0.9.4/FSA/man/Schnute.Rd | 2 FSA-0.9.4/FSA/man/SchnuteRichards.Rd | 2 FSA-0.9.4/FSA/man/SpotVA1.Rd | 2 FSA-0.9.4/FSA/man/Summarize.Rd | 2 FSA-0.9.4/FSA/man/WR79.Rd | 2 FSA-0.9.4/FSA/man/WSlit.Rd | 24 - FSA-0.9.4/FSA/man/WhitefishLC.Rd | 2 FSA-0.9.4/FSA/man/addZeroCatch.Rd | 4 FSA-0.9.4/FSA/man/ageBias.Rd | 8 FSA-0.9.4/FSA/man/agePrecision.Rd | 10 FSA-0.9.4/FSA/man/alkAgeDist.Rd | 4 FSA-0.9.4/FSA/man/alkIndivAge.Rd | 6 FSA-0.9.4/FSA/man/alkMeanVar.Rd | 4 FSA-0.9.4/FSA/man/alkPlot.Rd | 4 FSA-0.9.4/FSA/man/binCI.Rd | 2 FSA-0.9.4/FSA/man/boot.Rd | 2 FSA-0.9.4/FSA/man/capFirst.Rd | 2 FSA-0.9.4/FSA/man/capHistConvert.Rd | 4 FSA-0.9.4/FSA/man/capHistSum.Rd | 4 FSA-0.9.4/FSA/man/catchCurve.Rd | 4 FSA-0.9.4/FSA/man/chapmanRobson.Rd | 8 FSA-0.9.4/FSA/man/col2rgbt.Rd | 2 FSA-0.9.4/FSA/man/depletion.Rd | 4 FSA-0.9.4/FSA/man/dunnTest.Rd | 2 FSA-0.9.4/FSA/man/expandCounts.Rd | 2 FSA-0.9.4/FSA/man/expandLenFreq.Rd | 2 FSA-0.9.4/FSA/man/extraTests.Rd | 2 FSA-0.9.4/FSA/man/fact2num.Rd | 2 FSA-0.9.4/FSA/man/fishR.Rd | 13 FSA-0.9.4/FSA/man/growthModels.Rd | 6 FSA-0.9.4/FSA/man/headtail.Rd | 2 FSA-0.9.4/FSA/man/hist.formula.Rd | 4 FSA-0.9.4/FSA/man/histFromSum.Rd | 2 FSA-0.9.4/FSA/man/hyperCI.Rd | 2 FSA-0.9.4/FSA/man/is.odd.Rd | 2 FSA-0.9.4/FSA/man/knitUtil.Rd | 2 FSA-0.9.4/FSA/man/ksTest.Rd | 2 FSA-0.9.4/FSA/man/lagratio.Rd | 2 FSA-0.9.4/FSA/man/lencat.Rd | 4 FSA-0.9.4/FSA/man/logbtcf.Rd | 2 FSA-0.9.4/FSA/man/lwCompPreds.Rd | 4 FSA-0.9.4/FSA/man/metaM.Rd | 22 FSA-0.9.4/FSA/man/mrClosed.Rd | 4 FSA-0.9.4/FSA/man/mrOpen.Rd | 10 FSA-0.9.4/FSA/man/nlsBoot.Rd | 2 FSA-0.9.4/FSA/man/nlsTracePlot.Rd | 2 FSA-0.9.4/FSA/man/peek.Rd | 2 FSA-0.9.4/FSA/man/perc.Rd | 2 FSA-0.9.4/FSA/man/plotAB.Rd | 2 FSA-0.9.4/FSA/man/poiCI.Rd | 2 FSA-0.9.4/FSA/man/psdAdd.Rd | 4 FSA-0.9.4/FSA/man/psdCI.Rd | 8 FSA-0.9.4/FSA/man/psdCalc.Rd | 45 + FSA-0.9.4/FSA/man/psdPlot.Rd | 4 FSA-0.9.4/FSA/man/psdVal.Rd | 4 FSA-0.9.4/FSA/man/rcumsum.Rd | 2 FSA-0.9.4/FSA/man/removal.Rd | 4 FSA-0.9.4/FSA/man/repeatedRows2Keep.Rd | 2 FSA-0.9.4/FSA/man/se.Rd | 2 FSA-0.9.4/FSA/man/srFuns.Rd | 4 FSA-0.9.4/FSA/man/srStarts.Rd | 4 FSA-0.9.4/FSA/man/sumTable.Rd | 2 FSA-0.9.4/FSA/man/tictactoe.Rd | 4 FSA-0.9.4/FSA/man/validn.Rd | 2 FSA-0.9.4/FSA/man/vbStarts.Rd | 4 FSA-0.9.4/FSA/man/wrAdd.Rd | 4 FSA-0.9.4/FSA/man/wsVal.Rd | 4 FSA-0.9.4/FSA/tests/testthat/Rplots.pdf |only FSA-0.9.4/FSA/tests/testthat/testthat_AgeLengthKey.R | 4 FSA-0.9.4/FSA/tests/testthat/testthat_FSAUtils.R | 22 FSA-0.9.4/FSA/tests/testthat/testthat_PSD.R | 83 ++- FSA-0.9.4/FSA/tests/testthat/testthat_WSWR.R | 6 FSA-0.9.4/FSA/tests/testthat/testthat_bootstrap.R | 75 +-- 155 files changed, 1038 insertions(+), 795 deletions(-)
Title: Quality Control and Semantic Enrichment of Datasets
Description: A tool for the preparation and enrichment of health datasets for analysis. Provides functionality for assessing data quality and for improving the reliability and machine interpretability of a dataset.
'eHDPrep' also enables semantic enrichment of a dataset where metavariables are discovered from the relationships between input variables determined from user-provided ontologies.
Author: Tom Toner [aut] ,
Ian Overton [aut, cre]
Maintainer: Ian Overton <I.Overton@qub.ac.uk>
Diff between eHDPrep versions 1.2.1 dated 2022-09-07 and 1.3.2 dated 2023-02-01
DESCRIPTION | 12 +- MD5 | 51 +++++---- NAMESPACE | 3 NEWS.md |only R/QC_clean.R | 13 -- R/QC_completeness.R | 20 ++- R/QC_review.R | 2 R/data.R | 18 +++ R/high_level.R | 38 +++---- R/internal_consist.R | 4 R/semantic_enrich.R | 168 +++++++++++++++++++++++++++++-- build/vignette.rds |binary data/example_edge_tbl.rda |only data/example_ontology.rda |binary inst/doc/Introduction_to_eHDPrep.R | 62 +++++++---- inst/doc/Introduction_to_eHDPrep.Rmd | 100 ++++++++++++------ inst/doc/Introduction_to_eHDPrep.pdf |binary man/completeness_heatmap.Rd | 18 ++- man/eHDPrep-package.Rd | 8 + man/edge_tbl_to_graph.Rd |only man/example_edge_tbl.Rd |only man/example_mapping_file.Rd | 2 man/join_vars_to_ontol.Rd | 3 man/metavariable_agg.Rd | 3 man/metavariable_info.Rd | 8 + man/metavariable_variable_descendants.Rd |only man/semantic_enrichment.Rd | 35 +++--- tests/testthat/Rplots.pdf |binary vignettes/Introduction_to_eHDPrep.Rmd | 100 ++++++++++++------ 29 files changed, 488 insertions(+), 180 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate
generation, and method-of-moments parameter-estimation functions for the
Delaporte distribution with parameterization based on Vose (2008)
<isbn:9780470512845>. The Delaporte is a discrete probability distribution
which can be considered the convolution of a negative binomial distribution
with a Poisson distribution. Alternatively, it can be considered a counting
distribution with both Poisson and negative binomial components. It has been
studied in actuarial science as a frequency distribution which has more
variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 8.0.3 dated 2022-09-06 and 8.1.0 dated 2023-02-01
Delaporte-8.0.3/Delaporte/src/lgamma.f95 |only Delaporte-8.1.0/Delaporte/DESCRIPTION | 10 + Delaporte-8.1.0/Delaporte/MD5 | 39 +++--- Delaporte-8.1.0/Delaporte/R/Delaporte.R | 58 ++++------ Delaporte-8.1.0/Delaporte/README.md | 8 - Delaporte-8.1.0/Delaporte/build/partial.rdb |binary Delaporte-8.1.0/Delaporte/inst/CITATION | 24 +--- Delaporte-8.1.0/Delaporte/inst/NEWS.Rd | 21 +++ Delaporte-8.1.0/Delaporte/inst/tinytest/test-citation.r | 4 Delaporte-8.1.0/Delaporte/inst/tinytest/test-ddelap.r | 45 ++++--- Delaporte-8.1.0/Delaporte/inst/tinytest/test-momdelap.r | 66 +++++------ Delaporte-8.1.0/Delaporte/inst/tinytest/test-pdelap.r | 42 ++++--- Delaporte-8.1.0/Delaporte/inst/tinytest/test-qdelap.r | 52 +++++---- Delaporte-8.1.0/Delaporte/inst/tinytest/test-rdelap.r | 20 +-- Delaporte-8.1.0/Delaporte/man/Delaporte-internal.Rd | 3 Delaporte-8.1.0/Delaporte/man/Delaporte-package.Rd | 1 Delaporte-8.1.0/Delaporte/man/Delaporte.Rd | 24 ++-- Delaporte-8.1.0/Delaporte/src/Makevars | 7 - Delaporte-8.1.0/Delaporte/src/delaporte.f95 | 92 +++++++--------- Delaporte-8.1.0/Delaporte/src/utils.f95 | 26 ---- Delaporte-8.1.0/Delaporte/src/utils_and_wrappers.c | 8 - 21 files changed, 276 insertions(+), 274 deletions(-)
Title: Datasets of the CEO (Centre d'Estudis d'Opinio) for Opinion
Polls in Catalonia
Description: Easy and convenient access to the datasets of the
"Centre d'Estudis d'Opinio", the Catalan institution for polling and public
opinion. The package uses the data stored in the servers of the CEO and returns
it in a tidy format.
Author: Xavier Fernandez-i-Marin [aut, cre]
Maintainer: Xavier Fernandez-i-Marin <xavier.fim@gmail.com>
Diff between CEOdata versions 1.2.0.1 dated 2022-05-17 and 1.3.0.1 dated 2023-02-01
DESCRIPTION | 8 MD5 | 23 NEWS | 20 R/CEOdata.R | 16 README.md | 1 build/vignette.rds |binary inst/doc/cheatsheet.pdf |binary inst/doc/using_CEOdata.Rmd | 2 inst/doc/using_CEOdata.html | 782 +++++----- inst/doc/working_with_survey_data_using_the_CEOdata_package.html | 430 ++--- tests/testthat/test_conversion_factors.R |only tests/testthat/test_size_barometer.R | 4 vignettes/using_CEOdata.Rmd | 2 13 files changed, 706 insertions(+), 582 deletions(-)
Title: Landscape Visualizations in R and 'Unity'
Description: Functions for the retrieval, manipulation, and visualization
of 'geospatial' data, with an aim towards producing '3D' landscape
visualizations in the 'Unity' '3D' rendering engine. Functions are
also provided for retrieving elevation data and base map tiles from
the 'USGS' National Map <https://apps.nationalmap.gov/services/>.
Author: Michael Mahoney [aut, cre] ,
Mike Johnson [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>),
Sydney Foks [rev] for rOpenSci,
see <https://github.com/ropensci/software-review/issues/416>)
Maintainer: Michael Mahoney <mike.mahoney.218@gmail.com>
Diff between terrainr versions 0.7.2 dated 2022-12-07 and 0.7.3 dated 2023-02-01
terrainr-0.7.2/terrainr/tests/testthat/test-2-get_tiles_contours.R |only terrainr-0.7.3/terrainr/DESCRIPTION | 16 ++-- terrainr-0.7.3/terrainr/MD5 | 34 ++++++---- terrainr-0.7.3/terrainr/NEWS.md | 7 ++ terrainr-0.7.3/terrainr/R/add_bbox_buffer.R | 10 +- terrainr-0.7.3/terrainr/R/get_tiles.R | 23 ++++-- terrainr-0.7.3/terrainr/R/hit_api.R | 22 ++++-- terrainr-0.7.3/terrainr/README.md | 4 + terrainr-0.7.3/terrainr/inst/CITATION | 9 -- terrainr-0.7.3/terrainr/inst/doc/overview.html | 13 ++- terrainr-0.7.3/terrainr/inst/doc/unity_instructions.html | 13 ++- terrainr-0.7.3/terrainr/man/addbuff.Rd | 2 terrainr-0.7.3/terrainr/man/get_tiles.Rd | 8 +- terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_USGSHydroCached.R |only terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_USGSImageryOnly.R |only terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_USGSShadedReliefOnly.R |only terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_USGSTNMBlank.R |only terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_USGSTopo.R |only terrainr-0.7.3/terrainr/tests/testthat/test-2-get_tiles_contours.txt |only terrainr-0.7.3/terrainr/tests/testthat/testdata/USGSHydroCached.png |only terrainr-0.7.3/terrainr/tests/testthat/testdata/USGSImageryOnly.png |only terrainr-0.7.3/terrainr/tests/testthat/testdata/USGSShadedReliefOnly.png |only terrainr-0.7.3/terrainr/tests/testthat/testdata/USGSTNMBlank.png |only terrainr-0.7.3/terrainr/tests/testthat/testdata/USGSTopo.png |only 24 files changed, 105 insertions(+), 56 deletions(-)
Title: Identify Sudden Gains in Longitudinal Data
Description: Identify sudden gains based on the three criteria outlined by Tang and DeRubeis (1999) <doi:10.1037/0022-006X.67.6.894> to a selection of repeated measures. Sudden losses, defined as the opposite of sudden gains can also be identified. Two different datasets can be created, one including all sudden gains/losses and one including one selected sudden gain/loss for each case. It can extract scores around sudden gains/losses. It can plot the average change around sudden gains/losses and trajectories of individual cases.
Author: Milan Wiedemann [aut, cre] ,
Graham M Thew [aut] ,
Richard Stott [ctb] ,
Anke Ehlers [ctb, ths] ,
Mental Health Research UK [fnd],
Wellcome Trust [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between suddengains versions 0.6.0 dated 2023-01-31 and 0.6.1 dated 2023-02-01
DESCRIPTION | 8 ++++---- MD5 | 37 +++++++++++++++++++------------------ R/create_byperson.R | 2 +- R/create_bysg.R | 2 +- R/define_crit1_cutoff.R | 6 +++--- R/identify_sg.R | 4 ++-- R/identify_sl.R | 4 ++-- R/write_byperson.R | 2 +- R/write_bysg.R | 2 +- R/zzz.R | 13 ++++++++++--- build/partial.rdb |only inst/doc/shinygains.html | 2 +- inst/doc/suddengains-tutorial.html | 32 ++++++++++++++++---------------- man/create_byperson.Rd | 2 +- man/create_bysg.Rd | 2 +- man/define_crit1_cutoff.Rd | 6 +++--- man/identify_sg.Rd | 4 ++-- man/identify_sl.Rd | 4 ++-- man/write_byperson.Rd | 2 +- man/write_bysg.Rd | 2 +- 20 files changed, 72 insertions(+), 64 deletions(-)
Title: C++ Classes to Embed R in C++ (and C) Applications
Description: C++ classes to embed R in C++ (and C) applications
A C++ class providing the R interpreter is offered by this package
making it easier to have "R inside" your C++ application. As R itself
is embedded into your application, a shared library build of R is
required. This works on Linux, OS X and even on Windows provided you
use the same tools used to build R itself. Numerous examples are
provided in the nine subdirectories of the examples/ directory of
the installed package: standard, 'mpi' (for parallel computing), 'qt'
(showing how to embed 'RInside' inside a Qt GUI application), 'wt'
(showing how to build a "web-application" using the Wt toolkit),
'armadillo' (for 'RInside' use with 'RcppArmadillo'), 'eigen' (for
'RInside' use with 'RcppEigen'), and 'c_interface' for a basic C
interface and 'Ruby' illustration. The examples use 'GNUmakefile(s)'
with GNU extensions, so a GNU make is required (and will use the
'GNUmakefile' automatically). 'Doxygen'-generated documentation of
the C++ cl [...truncated...]
Author: Dirk Eddelbuettel, Romain Francois, and Lance Bachmeier
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RInside versions 0.2.17 dated 2022-04-01 and 0.2.18 dated 2023-02-01
ChangeLog | 21 +++++++++++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- README.md | 12 ++++++------ inst/NEWS.Rd | 8 ++++++++ inst/include/RInsideCommon.h | 14 +++++++------- src/Makevars | 14 +++++++++----- src/RInside.cpp | 18 +++++++++++++----- 8 files changed, 76 insertions(+), 35 deletions(-)
Title: Solver for Delay Differential Equations
Description: Functions for solving systems of delay differential equations by
interfacing with numerical routines written by Simon N. Wood, including
contributions from Benjamin J. Cairns. These numerical routines first
appeared in Simon Wood's 'solv95' program. This package includes a vignette
and a complete user's guide. 'PBSddesolve' originally appeared on CRAN under
the name 'ddesolve'. That version is no longer supported. The current name
emphasizes a close association with other 'PBS' packages, particularly
'PBSmodelling'.
Author: Alex Couture-Beil [aut],
Jon T. Schnute [aut],
Rowan Haigh [aut, cre],
Simon N. Wood [aut],
Benjamin J. Cairns [aut],
Nicholas Boers [ctb]
Maintainer: Rowan Haigh <rowan.haigh@dfo-mpo.gc.ca>
Diff between PBSddesolve versions 1.13.1 dated 2022-11-09 and 1.13.3 dated 2023-02-01
DESCRIPTION | 12 +-- MD5 | 18 ++-- R/zzz.r | 2 inst/doc/ChangeLog.txt | 12 +++ inst/doc/PBSddesolveIntro.pdf |binary man/PBSddesolve.Rd | 14 +-- man/dde.Rd | 149 ++++++++++++++++++++--------------------- man/pastvalue.Rd | 16 ++-- src/PBSddesolve.c | 6 - vignettes/PBSddesolveIntro.Rnw | 39 +++++----- 10 files changed, 138 insertions(+), 130 deletions(-)
Title: Padé Approximant Coefficients
Description: Given a vector of Taylor series coefficients of sufficient length
as input, the function returns the numerator and denominator coefficients
for the Padé approximant of appropriate order (Baker, 1975)
<ISBN:9780120748556>.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Pade versions 1.0.4 dated 2022-01-18 and 1.0.5 dated 2023-02-01
DESCRIPTION | 8 ++--- MD5 | 18 ++++++------- R/Pade.R | 22 ++++++++-------- README.md | 45 +++++++++++++++++++++++++-------- build/partial.rdb |binary inst/CITATION | 25 +++++++----------- inst/NEWS.Rd | 11 ++++++++ inst/tinytest/test_Pade.R | 62 +++++++++++++++++++++++++--------------------- man/Pade-package.Rd | 2 - man/Pade.Rd | 19 ++++++++------ 10 files changed, 125 insertions(+), 87 deletions(-)
Title: Neighborhood Deprivation Indices
Description: Computes various metrics of socio-economic deprivation and disparity in
the United States. Some metrics are considered "spatial" because they
consider the values of neighboring (i.e., adjacent) census geographies in
their computation, while other metrics are "aspatial" because they only
consider the value within each census geography. Two types of aspatial
neighborhood deprivation indices (NDI) are available: including:
(1) based on Messer et al. (2006) <doi:10.1007/s11524-006-9094-x>
and (2) based on Andrews et al. (2020) <doi:10.1080/17445647.2020.1750066>
and Slotman et al. (2022) <doi:10.1016/j.dib.2022.108002>
who use variables chosen by Roux and Mair (2010)
<doi:10.1111/j.1749-6632.2009.05333.x>. Both are a decomposition of multiple
demographic characteristics from the U.S. Census Bureau American Community
Survey 5-year estimates (ACS-5; 2006-2010 onward). Using data from the ACS-5
(2005-2009 onward), the package can also (1) compute the spatial Racial Iso [...truncated...]
Author: Ian D. Buller [aut, cre, cph] ,
NCI [cph, fnd]
Maintainer: Ian D. Buller <ian.buller@alumni.emory.edu>
Diff between ndi versions 0.1.3 dated 2022-12-01 and 0.1.4 dated 2023-02-01
DESCRIPTION | 49 MD5 | 97 NAMESPACE | 69 NEWS.md | 154 - R/DCtracts2020.R | 70 R/anthopolos.R | 424 +-- R/atkinson.R |only R/bell.R |only R/bemanian_beyer.R |only R/bravo.R | 440 +-- R/duncan.R | 516 +-- R/gini.R | 216 - R/globals.R | 86 R/krieger.R | 610 ++-- R/messer.R | 582 ++-- R/package.R | 115 R/powell_wiley.R | 728 ++--- R/sudano.R |only R/utils.R | 99 R/white.R |only R/zzz.R | 6 README.md | 1287 +++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 613 ++-- inst/doc/vignette.html | 4553 ++++++++++++++++++++--------------- inst/doc/vignette.html.asis | 6 man/DCtracts2020.Rd | 96 man/anthopolos.Rd | 156 - man/atkinson.Rd |only man/bell.Rd |only man/bemanian_beyer.Rd |only man/bravo.Rd | 128 man/duncan.Rd | 185 - man/gini.Rd | 106 man/krieger.Rd | 136 - man/messer.Rd | 178 - man/ndi-package.Rd | 100 man/powell_wiley.Rd | 188 - man/sudano.Rd |only man/white.Rd |only tests/spelling.R | 6 tests/testthat.R | 8 tests/testthat/test-anthopolos.R | 74 tests/testthat/test-atkinson.R |only tests/testthat/test-bell.R |only tests/testthat/test-bemanian_beyer.R |only tests/testthat/test-bravo.R | 76 tests/testthat/test-duncan.R | 96 tests/testthat/test-gini.R | 70 tests/testthat/test-krieger.R | 64 tests/testthat/test-messer.R | 92 tests/testthat/test-powell_wiley.R | 92 tests/testthat/test-sudano.R |only tests/testthat/test-white.R |only vignettes/vignette.Rmd | 1925 ++++++++------ vignettes/vignette.html.asis | 6 57 files changed, 8042 insertions(+), 6460 deletions(-)
Title: Structure for Organizing Monte Carlo Simulation Designs
Description: Provides tools to safely and efficiently organize and execute
Monte Carlo simulation experiments in R.
The package controls the structure and back-end of Monte Carlo simulation experiments
by utilizing a generate-analyse-summarise workflow. The workflow safeguards against
common simulation coding issues, such as automatically re-simulating non-convergent results,
prevents inadvertently overwriting simulation files, catches error and warning messages
during execution, and implicitly supports parallel processing.
For a pedagogical introduction to the package see
Sigal and Chalmers (2016) <doi:10.1080/10691898.2016.1246953>. For a more in-depth overview of
the package and its design philosophy see Chalmers and Adkins (2020) <doi:10.20982/tqmp.16.4.p248>.
Author: Phil Chalmers [aut, cre] ,
Matthew Sigal [ctb],
Ogreden Oguzhan [ctb]
Maintainer: Phil Chalmers <rphilip.chalmers@gmail.com>
Diff between SimDesign versions 2.10 dated 2023-01-24 and 2.10.1 dated 2023-02-01
DESCRIPTION | 10 +- MD5 | 38 +++++----- NAMESPACE | 3 NEWS.md | 16 ++-- R/SimDesign.R | 2 R/analysis.R | 38 ++++------ R/functions.R | 4 - R/runSimulation.R | 146 ++++++++++++++++++++++----------------- inst/CITATION | 12 ++- inst/doc/Catch_errors.html | 16 ++-- inst/doc/Fixed_obj_fun.html | 10 +- inst/doc/MultipleAnalyses.html | 4 - inst/doc/Parallel-computing.R | 27 +++++++ inst/doc/Parallel-computing.Rmd | 49 ++++++++++++- inst/doc/Parallel-computing.html | 36 ++++++++- inst/doc/Saving-results.html | 28 +++---- inst/doc/SimDesign-intro.html | 20 ++--- man/runSimulation.Rd | 85 ++++++++++++---------- tests/tests/test-SimDesign.R | 7 + vignettes/Parallel-computing.Rmd | 49 ++++++++++++- 20 files changed, 393 insertions(+), 207 deletions(-)
Title: Univariate and Bivariate Latent Change Score Modelling
Description: Helper functions to implement univariate and bivariate latent change score models in R using the 'lavaan' package.
For details about Latent Change Score Modeling (LCSM) see McArdle (2009) <doi:10.1146/annurev.psych.60.110707.163612> and Grimm, An, McArdle, Zonderman and Resnick (2012) <doi:10.1080/10705511.2012.659627>.
The package automatically generates 'lavaan' syntax for different model specifications and varying timepoints.
The 'lavaan' syntax generated by this package can be returned and further specifications can be added manually.
Longitudinal plots as well as simplified path diagrams can be created to visualise data and model specifications.
Estimated model parameters and fit statistics can be extracted as data frames.
Data for different univariate and bivariate LCSM can be simulated by specifying estimates for model parameters to explore their effects.
This package combines the strengths of other R packages like 'lavaan', 'broom', and 'semPlot' by generating 'lava [...truncated...]
Author: Milan Wiedemann [aut, cre] ,
Graham M Thew [ctb] ,
Urska Kosir [ctb] ,
Anke Ehlers [ths] ,
Mental Health Research UK [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between lcsm versions 0.1.2 dated 2020-07-24 and 0.3.1 dated 2023-02-01
lcsm-0.1.2/lcsm/vignettes/v3-lcsm-tutorial.R |only lcsm-0.1.2/lcsm/vignettes/v3-lcsm-tutorial.html |only lcsm-0.3.1/lcsm/DESCRIPTION | 23 lcsm-0.3.1/lcsm/LICENSE |only lcsm-0.3.1/lcsm/MD5 | 100 - lcsm-0.3.1/lcsm/NEWS.md | 2 lcsm-0.3.1/lcsm/R/data.R | 28 lcsm-0.3.1/lcsm/R/extract_fit.R | 2 lcsm-0.3.1/lcsm/R/extract_param.R | 2 lcsm-0.3.1/lcsm/R/fit_lcsm.R | 46 lcsm-0.3.1/lcsm/R/plot_lcsm.R | 335 ++- lcsm-0.3.1/lcsm/R/plot_trajectories.R | 2 lcsm-0.3.1/lcsm/R/sim_lcsm_data.R | 57 lcsm-0.3.1/lcsm/R/specify_lcsm_lavaan_syntax.R | 56 lcsm-0.3.1/lcsm/R/zzz.R |only lcsm-0.3.1/lcsm/README.md | 404 +--- lcsm-0.3.1/lcsm/build/partial.rdb |only lcsm-0.3.1/lcsm/build/vignette.rds |binary lcsm-0.3.1/lcsm/data/lcsm_data.rda |only lcsm-0.3.1/lcsm/inst/CITATION | 13 lcsm-0.3.1/lcsm/inst/doc/lcsm-parameters.R |only lcsm-0.3.1/lcsm/inst/doc/lcsm-parameters.Rmd |only lcsm-0.3.1/lcsm/inst/doc/lcsm-parameters.html |only lcsm-0.3.1/lcsm/inst/doc/v0-longitudinal-plots.html | 401 ++-- lcsm-0.3.1/lcsm/inst/doc/v1-lavaan-syntax.R | 38 lcsm-0.3.1/lcsm/inst/doc/v1-lavaan-syntax.Rmd | 48 lcsm-0.3.1/lcsm/inst/doc/v1-lavaan-syntax.html | 1267 ++++++++------ lcsm-0.3.1/lcsm/inst/doc/v2-path-diagrams.Rmd | 12 lcsm-0.3.1/lcsm/inst/doc/v2-path-diagrams.html | 321 +-- lcsm-0.3.1/lcsm/inst/doc/v3-extract-tutorial.Rmd | 6 lcsm-0.3.1/lcsm/inst/doc/v3-extract-tutorial.html | 286 +-- lcsm-0.3.1/lcsm/inst/doc/v4-simulate-data.Rmd | 2 lcsm-0.3.1/lcsm/inst/doc/v4-simulate-data.html | 632 +++--- lcsm-0.3.1/lcsm/man/data_bi_lcsm.Rd | 42 lcsm-0.3.1/lcsm/man/data_uni_lcsm.Rd | 22 lcsm-0.3.1/lcsm/man/extract_fit.Rd | 2 lcsm-0.3.1/lcsm/man/extract_param.Rd | 2 lcsm-0.3.1/lcsm/man/figures/README-unnamed-chunk-10-1.png |binary lcsm-0.3.1/lcsm/man/figures/README-unnamed-chunk-3-1.png |binary lcsm-0.3.1/lcsm/man/figures/README-unnamed-chunk-9-1.png |binary lcsm-0.3.1/lcsm/man/fit_bi_lcsm.Rd | 17 lcsm-0.3.1/lcsm/man/fit_uni_lcsm.Rd | 17 lcsm-0.3.1/lcsm/man/lcsm_data.Rd |only lcsm-0.3.1/lcsm/man/plot_lcsm.Rd | 101 - lcsm-0.3.1/lcsm/man/plot_trajectories.Rd | 2 lcsm-0.3.1/lcsm/man/sim_bi_lcsm.Rd | 21 lcsm-0.3.1/lcsm/man/sim_uni_lcsm.Rd | 16 lcsm-0.3.1/lcsm/man/specify_bi_lcsm.Rd | 11 lcsm-0.3.1/lcsm/man/specify_uni_lcsm.Rd | 14 lcsm-0.3.1/lcsm/tests |only lcsm-0.3.1/lcsm/vignettes/lcsm-parameters.Rmd |only lcsm-0.3.1/lcsm/vignettes/references.bib | 2 lcsm-0.3.1/lcsm/vignettes/v1-lavaan-syntax.Rmd | 48 lcsm-0.3.1/lcsm/vignettes/v2-path-diagrams.Rmd | 12 lcsm-0.3.1/lcsm/vignettes/v3-extract-tutorial.Rmd | 6 lcsm-0.3.1/lcsm/vignettes/v4-simulate-data.Rmd | 2 56 files changed, 2556 insertions(+), 1864 deletions(-)
Title: Visualizing Categorical Data
Description: Visualization techniques, data sets, summary and inference
procedures aimed particularly at categorical data. Special
emphasis is given to highly extensible grid graphics. The
package was package was originally inspired by the book
"Visualizing Categorical Data" by Michael Friendly and is
now the main support package for a new book,
"Discrete Data Analysis with R" by Michael Friendly and
David Meyer (2015).
Author: David Meyer [aut, cre] ,
Achim Zeileis [aut] ,
Kurt Hornik [aut] ,
Florian Gerber [ctb],
Michael Friendly [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between vcd versions 1.4-10 dated 2022-06-09 and 1.4-11 dated 2023-02-01
DESCRIPTION | 20 ++++++---- MD5 | 80 ++++++++++++++++++++--------------------- build/partial.rdb |binary build/vignette.rds |binary data/Arthritis.rda |binary data/Baseball.rda |binary data/BrokenMarriage.rda |binary data/Bundesliga.rda |binary data/Bundestag2005.rda |binary data/Butterfly.rda |binary data/CoalMiners.rda |binary data/DanishWelfare.rda |binary data/Employment.rda |binary data/Federalist.rda |binary data/Hitters.rda |binary data/HorseKicks.rda |binary data/Hospital.rda |binary data/JobSatisfaction.rda |binary data/JointSports.rda |binary data/Lifeboats.rda |binary data/MSPatients.rda |binary data/NonResponse.rda |binary data/OvaryCancer.rda |binary data/PreSex.rda |binary data/Punishment.rda |binary data/RepVict.rda |binary data/Rochdale.rda |binary data/Saxony.rda |binary data/SexualFun.rda |binary data/SpaceShuttle.rda |binary data/Suicide.rda |binary data/Trucks.rda |binary data/UKSoccer.rda |binary data/VisualAcuity.rda |binary data/VonBort.rda |binary data/WeldonDice.rda |binary data/WomenQueue.rda |binary inst/CITATION | 53 +++++++++++---------------- inst/NEWS.Rd | 4 ++ inst/doc/residual-shadings.pdf |binary inst/doc/strucplot.pdf |binary 41 files changed, 79 insertions(+), 78 deletions(-)
Title: Sets, Generalized Sets, Customizable Sets and Intervals
Description: Data structures and basic operations for ordinary sets,
generalizations such as fuzzy sets, multisets, and
fuzzy multisets, customizable sets, and intervals.
Author: David Meyer [aut, cre] ,
Kurt Hornik [aut] ,
Christian Buchta [ctb]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between sets versions 1.0-21 dated 2022-02-09 and 1.0-22 dated 2023-02-01
DESCRIPTION | 18 +++++++++++------- MD5 | 14 +++++++------- build/partial.rdb |binary build/vignette.rds |binary data/fuzzy_docs.rda |binary inst/CITATION | 11 ++++++----- inst/NEWS.Rd | 6 ++++++ inst/doc/sets.pdf |binary 8 files changed, 30 insertions(+), 19 deletions(-)
Title: Misc Functions of the Department of Statistics, Probability
Theory Group (Formerly: E1071), TU Wien
Description: Functions for latent class analysis, short time Fourier
transform, fuzzy clustering, support vector machines,
shortest path computation, bagged clustering, naive Bayes
classifier, generalized k-nearest neighbour ...
Author: David Meyer [aut, cre] ,
Evgenia Dimitriadou [aut, cph],
Kurt Hornik [aut] ,
Andreas Weingessel [aut],
Friedrich Leisch [aut],
Chih-Chung Chang [ctb, cph] ,
Chih-Chen Lin [ctb, cph]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between e1071 versions 1.7-12 dated 2022-10-24 and 1.7-13 dated 2023-02-01
DESCRIPTION | 18 +++++++++++------- MD5 | 10 +++++----- build/vignette.rds |binary inst/NEWS.Rd | 4 ++++ inst/doc/svmdoc.pdf |binary inst/doc/svminternals.pdf |binary 6 files changed, 20 insertions(+), 12 deletions(-)
Title: Code Analysis Tools for R
Description: Code analysis tools for R.
Author: Luke Tierney <luke-tierney@uiowa.edu>
Maintainer: Luke Tierney <luke-tierney@uiowa.edu>
Diff between codetools versions 0.2-18 dated 2020-11-04 and 0.2-19 dated 2023-02-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- man/codetools.Rd | 4 ++++ 3 files changed, 9 insertions(+), 5 deletions(-)
Title: Portable Native and Joint Stack Traces
Description: Obtain the native stack trace and fuse it with R's
stack trace for easier debugging of R packages with native code.
Author: Kirill Mueller [aut, cre] ,
R Consortium [fnd],
Ian Lance Taylor [aut] ,
Free Software Foundation [cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between winch versions 0.0.11 dated 2022-10-31 and 0.0.12 dated 2023-02-01
DESCRIPTION | 10 +-- MD5 | 16 ++--- NEWS.md | 7 ++ README.md | 2 build/vignette.rds |binary inst/doc/report.html | 106 +++++++++++++++++++-------------------- src/trace_back_backtrace.c | 3 - src/trace_back_unwind.c | 2 src/vendor/libbacktrace/pecoff.c | 6 +- 9 files changed, 80 insertions(+), 72 deletions(-)
Title: Read, Validate, Analyze, and Map GTFS Feeds
Description: Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <https://gtfs.org/>.
Author: Flavio Poletti [aut, cre],
Daniel Herszenhut [aut] ,
Mark Padgham [aut],
Tom Buckley [aut],
Danton Noriega-Goodwin [aut],
Angela Li [ctb],
Elaine McVey [ctb],
Charles Hans Thompson [ctb],
Michael Sumner [ctb],
Patrick Hausmann [ctb],
Bob Rudis [ctb], [...truncated...]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between tidytransit versions 1.4 dated 2022-08-26 and 1.4.1 dated 2023-02-01
DESCRIPTION | 16 +- MD5 | 30 ++--- R/io.R | 19 --- R/raptor.R | 238 ---------------------------------------- R/spatial.R | 4 R/tidygtfs.R |only R/time.R | 4 R/travel_times.R |only R/utils.R | 13 ++ inst/doc/frequency.html | 12 +- inst/doc/introduction.html | 56 ++++----- inst/doc/servicepatterns.html | 2 inst/doc/timetable.html | 2 man/filter_stop_times.Rd | 2 man/travel_times.Rd | 2 tests/testthat/test-raptor.R | 13 ++ tests/testthat/test-read-gtfs.R | 52 ++------ 17 files changed, 109 insertions(+), 356 deletions(-)
Title: Steve's Miscellaneous Functions
Description: These are miscellaneous functions that I find useful for my research and teaching.
The contents include themes for plots, functions for simulating
quantities of interest from regression models, functions for simulating various
forms of fake data for instructional/research purposes, and many more. All told, the functions
provided here are broadly useful for data organization, data presentation, data recoding,
and data simulation.
Author: Steve Miller [aut, cre],
Ben Bolker [ctb],
Dave Armstrong [ctb],
John Fox [ctb],
Winston Chang [ctb],
Brian Ripley [ctb],
Bill Venables [ctb],
Pascal van Kooten [ctb],
Gerko Vink [ctb],
Paul Williamson [ctb],
Andreas Beger [ctb] ,
Vincent Arel-Bundoc [...truncated...]
Maintainer: Steve Miller <steven.v.miller@gmail.com>
Diff between stevemisc versions 1.4.1 dated 2022-04-12 and 1.5.0 dated 2023-02-01
DESCRIPTION | 15 +++++++++------ MD5 | 24 ++++++++++++++---------- NAMESPACE | 6 +++++- NEWS.md | 8 ++++++++ R/at.R |only R/get_sims.R | 2 ++ R/ggplot-themes.R | 48 +++++++++++++++++++++++++++--------------------- R/misc.R | 7 ++++++- R/r2sd.R | 16 ---------------- R/wls.R |only man/at.Rd |only man/get_sims.Rd | 2 ++ man/ggplot-themes.Rd | 21 +++++++++++++-------- man/r2sd.Rd | 5 ----- man/wls.Rd |only 15 files changed, 86 insertions(+), 68 deletions(-)
More information about SampleSizeProportions at CRAN
Permanent link
Title: Data Analysis for Censored Environmental Data
Description: Contains methods described by Dennis Helsel in
his book "Statistics for Censored Environmental Data
using Minitab and R" (2011) and courses and videos at
<https://practicalstats.com>. This package adds new functions to
the `NADA` Package.
Author: Paul Julian [aut, cre],
Dennis Helsel [aut, cph]
Maintainer: Paul Julian <pauljulianphd@gmail.com>
Diff between NADA2 versions 1.1.2 dated 2023-01-27 and 1.1.3 dated 2023-02-01
DESCRIPTION | 8 MD5 | 12 - NEWS.md | 6 R/cencorreg.R | 21 - build/partial.rdb |binary inst/doc/DataAnalysis.html | 500 ++++++++++++++++++++++----------------------- man/cencorreg.Rd | 2 7 files changed, 274 insertions(+), 275 deletions(-)
Title: Mocking in R
Description: Provides a means to mock a package function, i.e.,
temporarily substitute it for testing. Designed as a drop-in
replacement for the now deprecated 'testthat::with_mock()' and
'testthat::local_mock()'.
Author: Kirill Mueller [aut, cre]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between mockr versions 0.2.0 dated 2022-04-02 and 0.2.1 dated 2023-02-01
DESCRIPTION | 14 - MD5 | 16 - NEWS.md | 11 + R/env.R | 13 + R/with-mock.R | 2 build/vignette.rds |binary inst/doc/mockr.html | 416 +++++++++++++++++++++++++++++++++++++++------------ man/local_mock.Rd | 2 man/mockr-package.Rd | 2 9 files changed, 366 insertions(+), 110 deletions(-)
Title: Analyzing Data Through of Percentage of Importance Indice
(Production Unknown) and Its Derivations
Description: The Importance Index (I.I.) can determine the loss and solution sources for a system in certain knowledge areas (e.g., agronomy), when production (e.g., fruits) is known (Demolin-Leite, 2021). Events (e.g., agricultural pest) can have different magnitudes (numerical measurements), frequencies, and distributions (aggregate, random, or regular) of event occurrence, and I.I. bases in this triplet (Demolin-Leite, 2021) <https://cjascience.com/index.php/CJAS/article/view/1009/1319>. Usually, the higher the magnitude and frequency of aggregated distribution, the greater the problem or the solution (e.g., natural enemies versus pests) for the system (Demolin-Leite, 2021). However, the final production of the system is not always known or is difficult to determine (e.g., degraded area recovery). A derivation of the I.I. is the percentage of Importance Index-Production Unknown (% I.I.-PU) that can detect the loss or solution sources, when production is unknown for the system (Demolin-Leit [...truncated...]
Author: Germano Leao Demolin-Leite [aut]
,
Alcinei Mistico Azevedo [aut, cre]
Maintainer: Alcinei Mistico Azevedo <alcineimistico@hotmail.com>
Diff between IIProductionUnknown versions 0.0.2 dated 2022-10-11 and 0.0.3 dated 2023-02-01
DESCRIPTION | 8 ++--- MD5 | 52 +++++++++++++++++------------------ NEWS.md | 3 ++ R/ChisqTest_Distribution.R | 6 ++-- R/DataDamage.R | 8 ++++- R/DataDefoliation.R | 7 +++- R/DataLossSource.R | 7 +++- R/DataSolutionSource.R | 7 +++- R/EffectivenessOfSolution.R | 16 ++++++---- R/IIProductionUnknown-package.R | 4 +- R/LossSource.R | 16 ++++++---- R/ReductionAbundance.R | 6 ++-- R/ReductionDamage.R | 4 ++ R/SelectEffectivenessOfSolution.R | 46 ++++++++++++++++++++++++++++++ R/SolutionSource.R | 9 +++--- man/ChisqTest_Distribution.Rd | 6 ++-- man/DataDamage.Rd | 7 ++++ man/DataDefoliation.Rd | 7 ++++ man/DataLossSource.Rd | 7 ++++ man/DataSolutionSource.Rd | 7 ++++ man/EffectivenessOfSolution.Rd | 10 ++++-- man/IIProductionUnknown-package.Rd | 4 +- man/LossSource.Rd | 12 ++++---- man/ReductionAbundance.Rd | 6 ++-- man/ReductionDamage.Rd | 3 +- man/SelectEffectivenessOfSolution.Rd | 43 ++++++++++++++++++++++++++++ man/SolutionSource.Rd | 7 ++-- 27 files changed, 234 insertions(+), 84 deletions(-)
More information about IIProductionUnknown at CRAN
Permanent link
Title: Flexible Parametric Survival and Multi-State Models
Description: Flexible parametric models for time-to-event data,
including the Royston-Parmar spline model, generalized gamma and
generalized F distributions. Any user-defined parametric
distribution can be fitted, given at least an R function defining
the probability density or hazard. There are also tools for
fitting and predicting from fully parametric multi-state models,
based on either cause-specific hazards or mixture models.
Author: Christopher Jackson [aut, cre],
Paul Metcalfe [ctb],
Jordan Amdahl [ctb],
Matthew T. Warkentin [ctb],
Michael Sweeting [ctb],
Kevin Kunzmann [ctb]
Maintainer: Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Diff between flexsurv versions 2.2.1 dated 2022-12-22 and 2.2.2 dated 2023-02-01
flexsurv-2.2.1/flexsurv/tests/testthat/test_residuals.R |only flexsurv-2.2.2/flexsurv/DESCRIPTION | 10 flexsurv-2.2.2/flexsurv/MD5 | 79 +- flexsurv-2.2.2/flexsurv/R/ajfit.R | 2 flexsurv-2.2.2/flexsurv/R/custom.R | 6 flexsurv-2.2.2/flexsurv/R/distributions.R | 423 +++++++------- flexsurv-2.2.2/flexsurv/R/flexsurvreg.R | 2 flexsurv-2.2.2/flexsurv/R/fmixmsm.R | 12 flexsurv-2.2.2/flexsurv/R/mstate.R | 8 flexsurv-2.2.2/flexsurv/R/plot.flexsurvreg.R | 8 flexsurv-2.2.2/flexsurv/R/simulate_flexsurvreg.R | 28 flexsurv-2.2.2/flexsurv/R/spline.R | 6 flexsurv-2.2.2/flexsurv/R/standsurv.R | 8 flexsurv-2.2.2/flexsurv/R/summary.flexsurvmix.R | 2 flexsurv-2.2.2/flexsurv/R/summary.flexsurvreg.R | 110 +-- flexsurv-2.2.2/flexsurv/R/utils.R | 18 flexsurv-2.2.2/flexsurv/build/partial.rdb |binary flexsurv-2.2.2/flexsurv/build/vignette.rds |binary flexsurv-2.2.2/flexsurv/inst/NEWS | 7 flexsurv-2.2.2/flexsurv/inst/doc/distributions.pdf |binary flexsurv-2.2.2/flexsurv/inst/doc/flexsurv-examples.pdf |binary flexsurv-2.2.2/flexsurv/inst/doc/flexsurv.pdf |binary flexsurv-2.2.2/flexsurv/inst/doc/multistate.Rnw | 1 flexsurv-2.2.2/flexsurv/inst/doc/multistate.pdf |binary flexsurv-2.2.2/flexsurv/man/hr_flexsurvreg.Rd | 2 flexsurv-2.2.2/flexsurv/man/normboot.flexsurvreg.Rd | 6 flexsurv-2.2.2/flexsurv/man/simulate.flexsurvreg.Rd | 140 ++-- flexsurv-2.2.2/flexsurv/man/standsurv.Rd | 6 flexsurv-2.2.2/flexsurv/man/summary.flexsurvreg.Rd | 2 flexsurv-2.2.2/flexsurv/tests/test_base.R | 9 flexsurv-2.2.2/flexsurv/tests/testthat/test_custom.R | 4 flexsurv-2.2.2/flexsurv/tests/testthat/test_flexsurvmix.R | 6 flexsurv-2.2.2/flexsurv/tests/testthat/test_flexsurvreg.R | 71 +- flexsurv-2.2.2/flexsurv/tests/testthat/test_fmsm.R | 4 flexsurv-2.2.2/flexsurv/tests/testthat/test_genf.R | 10 flexsurv-2.2.2/flexsurv/tests/testthat/test_gengamma.R | 2 flexsurv-2.2.2/flexsurv/tests/testthat/test_mstate.R | 26 flexsurv-2.2.2/flexsurv/tests/testthat/test_simulate.R | 2 flexsurv-2.2.2/flexsurv/tests/testthat/test_spline.R | 2 flexsurv-2.2.2/flexsurv/tests/testthat/test_utils.R | 4 flexsurv-2.2.2/flexsurv/vignettes/multistate.Rnw | 1 41 files changed, 529 insertions(+), 498 deletions(-)
Title: Geometric Morphometric Methods and Virtual Anthropology Tools
Description: Tools for geometric morphometric analysis. The package includes tools of virtual anthropology to align two not articulated parts belonging to the same specimen, to build virtual cavities as endocast (Profico et al, 2021 <doi:10.1002/ajpa.24340>).
Author: Antonio Profico, Costantino Buzi, Silvia Castiglione, Marina Melchionna, Paolo Piras, Pasquale Raia, Alessio Veneziano
Maintainer: Antonio Profico <antonio.profico@gmail.com>
Diff between Arothron versions 2.0.3 dated 2021-10-01 and 2.0.5 dated 2023-02-01
DESCRIPTION | 14 +-- MD5 | 23 ++++-- NAMESPACE | 130 ++++++++++++++++++------------------ R/Altapic.R |only R/dec.curve.R | 4 - R/image2palettes.r |only R/localmeshdiff.R | 178 ++++++++++++++++++++++++-------------------------- R/permutangle.r |only R/pov_selecter.R | 8 +- data/Altapic.rda |only data/datalist | 1 man/Altapic.Rd |only man/dec.curve.Rd | 4 - man/image2palettes.Rd |only man/localmeshdiff.Rd | 26 +++++++ man/permutangle.Rd |only 16 files changed, 210 insertions(+), 178 deletions(-)
Title: Tools for Reading, Tokenizing and Parsing R Code
Description: Tools for the reading and tokenization of R code. The
'sourcetools' package provides both an R and C++ interface for the tokenization
of R code, and helpers for interacting with the tokenized representation of R
code.
Author: Kevin Ushey
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between sourcetools versions 0.1.7 dated 2018-04-24 and 0.1.7-1 dated 2023-02-01
DESCRIPTION | 7 +++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ inst/include/sourcetools/core/macros.h | 4 ++-- inst/include/sourcetools/tokenization/Token.h | 11 ++++++----- 5 files changed, 20 insertions(+), 15 deletions(-)
Title: Fixed Rank Kriging
Description: A tool for spatial/spatio-temporal modelling and prediction with large datasets. The approach models the field, and hence the covariance function, using a set of basis functions. This fixed-rank basis-function representation facilitates the modelling of big data, and the method naturally allows for non-stationary, anisotropic covariance functions. Discretisation of the spatial domain into so-called basic areal units (BAUs) facilitates the use of observations with varying support (i.e., both point-referenced and areal supports, potentially simultaneously), and prediction over arbitrary user-specified regions. `FRK` also supports inference over various manifolds, including the 2D plane and 3D sphere, and it provides helper functions to model, fit, predict, and plot with relative ease. Version 2.0.0 and above also supports the modelling of non-Gaussian data (e.g., Poisson, binomial, negative-binomial, gamma, and inverse-Gaussian) by employing a generalised linear mixed model (GLMM) framew [...truncated...]
Author: Andrew Zammit-Mangion [aut, cre],
Matthew Sainsbury-Dale [aut]
Maintainer: Andrew Zammit-Mangion <andrewzm@gmail.com>
Diff between FRK versions 2.1.3 dated 2022-12-20 and 2.1.5 dated 2023-02-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- R/geometryfns.R | 31 +++++++++++++++++++++++++++---- inst/CITATION | 25 ++++++++++++------------- inst/doc/FRK_intro.pdf |binary inst/doc/FRK_non-Gaussian.pdf |binary tests/testthat/test_BAUs.R | 23 +++++++++++++++++++++-- tests/testthat/test_SRE.R | 8 ++++---- 8 files changed, 75 insertions(+), 34 deletions(-)
Title: Biased Urn Model Distributions
Description: Statistical models of biased sampling in the form of
univariate and multivariate noncentral hypergeometric distributions,
including Wallenius' noncentral hypergeometric distribution and
Fisher's noncentral hypergeometric distribution.
See vignette("UrnTheory") for explanation of these distributions.
Literature:
Fog, A. (2008a). Calculation Methods for Wallenius' Noncentral Hypergeometric Distribution, Communications in Statistics, Simulation and Computation, 37(2) <doi:10.1080/03610910701790269>.
Fog, A. (2008b). Sampling methods for Wallenius’ and Fisher’s noncentral hypergeometric distributions, Communications in Statistics—Simulation and Computation, 37(2)
<doi:10.1080/03610910701790236>.
Author: Agner Fog
Maintainer: Agner Fog <agner@agner.org>
Diff between BiasedUrn versions 2.0.8 dated 2022-10-22 and 2.0.9 dated 2023-02-01
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- inst/doc/UrnTheory.pdf |binary man/BiasedUrn-1-Package.Rd | 4 +- src/fnchyppr.cpp | 19 +++++----- src/stoc3.cpp | 10 +++-- src/stocc.h | 8 ++-- src/urn1.cpp | 78 +++++++++++++++++++++++++++------------------ src/wnchyppr.cpp | 53 ++++++++++++++++-------------- 9 files changed, 109 insertions(+), 87 deletions(-)
Title: Profile R Code and Visualize with 'Pprof'
Description: Like similar profiling tools,
the 'proffer' package automatically detects
sources of slowness in R code.
The distinguishing feature of 'proffer' is its utilization of
'pprof', which supplies interactive visualizations
that are efficient and easy to interpret.
Behind the scenes, the 'profile' package converts
native Rprof() data to a protocol buffer
that 'pprof' understands.
For the documentation of 'proffer',
visit <https://r-prof.github.io/proffer/>.
To learn about the implementations and methodologies of
'pprof', 'profile', and protocol buffers,
visit <https://github.com/google/pprof>.
<https://developers.google.com/protocol-buffers>,
and <https://github.com/r-prof/profile>, respectively.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between proffer versions 0.1.5 dated 2021-07-26 and 0.1.6 dated 2023-02-01
DESCRIPTION | 13 +++++++------ MD5 | 18 +++++++++--------- NAMESPACE | 1 + NEWS.md | 9 ++++++++- R/install.R | 6 +++--- R/package.R | 1 + R/pprof.R | 16 +++++++++------- inst/WORDLIST | 2 ++ man/install_go.Rd | 4 ++-- man/random_port.Rd | 12 ++++++++---- 10 files changed, 50 insertions(+), 32 deletions(-)
Title: Spatial Absorbing Markov Chains
Description: Implements functions for working with absorbing Markov chains. The
implementation is based on the framework described in "Toward a unified
framework for connectivity that disentangles movement and mortality in space
and time" by Fletcher et al. (2019) <doi:10.1111/ele.13333>, which applies
them to spatial ecology. This framework incorporates both resistance and
absorption with spatial absorbing Markov chains (SAMC) to provide several
short-term and long-term predictions for metrics related to connectivity in
landscapes. Despite the ecological context of the framework, this package
can be used in any application of absorbing Markov chains.
Author: Andrew Marx [aut, cre, cph] ,
Robert Fletcher [ctb] ,
Miguel Acevedo [ctb] ,
Jorge Sefair [ctb] ,
Chao Wang [ctb]
Maintainer: Andrew Marx <ajm.rpackages@gmail.com>
Diff between samc versions 2.0.1 dated 2022-06-11 and 3.0.2 dated 2023-02-01
samc-2.0.1/samc/data/ex_abs_data.rda |only samc-2.0.1/samc/data/ex_occ_data.rda |only samc-2.0.1/samc/data/ex_res_data.rda |only samc-2.0.1/samc/man/ex_abs_data.Rd |only samc-2.0.1/samc/man/ex_occ_data.Rd |only samc-2.0.1/samc/man/ex_res_data.Rd |only samc-3.0.2/samc/DESCRIPTION | 17 samc-3.0.2/samc/MD5 | 266 ++--- samc-3.0.2/samc/NAMESPACE | 5 samc-3.0.2/samc/NEWS.md | 48 samc-3.0.2/samc/R/RcppExports.R | 64 + samc-3.0.2/samc/R/absorption.R | 47 samc-3.0.2/samc/R/check.R | 103 +- samc-3.0.2/samc/R/cond_passage.R | 15 samc-3.0.2/samc/R/data.R | 31 samc-3.0.2/samc/R/dispersal.R | 85 - samc-3.0.2/samc/R/distribution.R | 24 samc-3.0.2/samc/R/generics.R | 29 samc-3.0.2/samc/R/internal-classes.R | 14 samc-3.0.2/samc/R/internal-functions.R | 355 ++++++ samc-3.0.2/samc/R/locate.R | 34 samc-3.0.2/samc/R/map.R | 44 samc-3.0.2/samc/R/mortality.R | 101 - samc-3.0.2/samc/R/pairwise.R | 2 samc-3.0.2/samc/R/rasterize.R |only samc-3.0.2/samc/R/samc-class.R | 15 samc-3.0.2/samc/R/samc.R | 405 +++---- samc-3.0.2/samc/R/survival.R | 27 samc-3.0.2/samc/R/visitation.R | 270 ++++- samc-3.0.2/samc/R/zzz.R | 8 samc-3.0.2/samc/build/vignette.rds |binary samc-3.0.2/samc/data/example_maze.rda |only samc-3.0.2/samc/data/example_split_corridor.rda |only samc-3.0.2/samc/inst/CITATION | 17 samc-3.0.2/samc/inst/doc/article-circuit-theory.R |only samc-3.0.2/samc/inst/doc/article-circuit-theory.Rmd |only samc-3.0.2/samc/inst/doc/article-circuit-theory.html |only samc-3.0.2/samc/inst/doc/code-snippets.html | 330 +++++- samc-3.0.2/samc/inst/doc/data-disconnected.Rmd | 2 samc-3.0.2/samc/inst/doc/data-disconnected.html | 357 +++++- samc-3.0.2/samc/inst/doc/example-coinflip.R | 4 samc-3.0.2/samc/inst/doc/example-coinflip.Rmd | 14 samc-3.0.2/samc/inst/doc/example-coinflip.html | 431 ++++++-- samc-3.0.2/samc/inst/doc/example-maze-part1.R | 81 - samc-3.0.2/samc/inst/doc/example-maze-part1.Rmd | 42 samc-3.0.2/samc/inst/doc/example-maze-part1.html | 665 +++++++++---- samc-3.0.2/samc/inst/doc/example-maze-part2.R | 74 - samc-3.0.2/samc/inst/doc/example-maze-part2.Rmd | 22 samc-3.0.2/samc/inst/doc/example-maze-part2.html | 641 +++++++++--- samc-3.0.2/samc/inst/doc/example-maze-part3.R | 79 - samc-3.0.2/samc/inst/doc/example-maze-part3.Rmd | 20 samc-3.0.2/samc/inst/doc/example-maze-part3.html | 506 +++++++-- samc-3.0.2/samc/inst/doc/overview.R | 20 samc-3.0.2/samc/inst/doc/overview.Rmd | 96 - samc-3.0.2/samc/inst/doc/overview.html | 620 +++++++++--- samc-3.0.2/samc/inst/doc/parallel.R | 10 samc-3.0.2/samc/inst/doc/parallel.Rmd | 16 samc-3.0.2/samc/inst/doc/parallel.html | 386 ++++++- samc-3.0.2/samc/inst/doc/performance.R | 6 samc-3.0.2/samc/inst/doc/performance.Rmd | 29 samc-3.0.2/samc/inst/doc/performance.html | 387 ++++++- samc-3.0.2/samc/inst/doc/troubleshooting.R | 26 samc-3.0.2/samc/inst/doc/troubleshooting.Rmd | 26 samc-3.0.2/samc/inst/doc/troubleshooting.html | 391 ++++++- samc-3.0.2/samc/inst/doc/tutorial-animations.R | 13 samc-3.0.2/samc/inst/doc/tutorial-animations.html | 379 +++++-- samc-3.0.2/samc/inst/doc/tutorial-basic.R | 46 samc-3.0.2/samc/inst/doc/tutorial-basic.Rmd | 46 samc-3.0.2/samc/inst/doc/tutorial-basic.html | 476 ++++++--- samc-3.0.2/samc/inst/doc/tutorial-ggplot.R | 68 - samc-3.0.2/samc/inst/doc/tutorial-ggplot.html | 465 ++++++--- samc-3.0.2/samc/inst/doc/tutorial-locations.R | 33 samc-3.0.2/samc/inst/doc/tutorial-locations.Rmd | 33 samc-3.0.2/samc/inst/doc/tutorial-locations.html | 495 +++++++-- samc-3.0.2/samc/inst/doc/tutorial-multiple-absorption.R | 51 samc-3.0.2/samc/inst/doc/tutorial-multiple-absorption.Rmd | 51 samc-3.0.2/samc/inst/doc/tutorial-multiple-absorption.html | 568 ++++++++--- samc-3.0.2/samc/inst/doc/tutorial-temporal.R | 27 samc-3.0.2/samc/inst/doc/tutorial-temporal.Rmd | 27 samc-3.0.2/samc/inst/doc/tutorial-temporal.html | 387 +++++-- samc-3.0.2/samc/inst/examples/example.R | 26 samc-3.0.2/samc/inst/examples/locate.R | 14 samc-3.0.2/samc/inst/examples/pairwise.R | 7 samc-3.0.2/samc/man/absorption.Rd | 45 samc-3.0.2/samc/man/char_null-class.Rd |only samc-3.0.2/samc/man/check.Rd | 58 - samc-3.0.2/samc/man/cond_passage.Rd | 38 samc-3.0.2/samc/man/dispersal.Rd | 48 samc-3.0.2/samc/man/distribution.Rd | 40 samc-3.0.2/samc/man/example_maze.Rd |only samc-3.0.2/samc/man/example_split_corridor.Rd |only samc-3.0.2/samc/man/locate.Rd | 24 samc-3.0.2/samc/man/map.Rd | 33 samc-3.0.2/samc/man/mortality.Rd | 46 samc-3.0.2/samc/man/pairwise.Rd | 9 samc-3.0.2/samc/man/rasterize.Rd |only samc-3.0.2/samc/man/samc-class.Rd | 13 samc-3.0.2/samc/man/samc.Rd | 110 -- samc-3.0.2/samc/man/samc_data-class.Rd | 2 samc-3.0.2/samc/man/survival.Rd | 40 samc-3.0.2/samc/man/visitation.Rd | 150 ++ samc-3.0.2/samc/src/Makevars | 2 samc-3.0.2/samc/src/Makevars.win | 2 samc-3.0.2/samc/src/RcppExports.cpp | 205 +++- samc-3.0.2/samc/src/cond_passage.cpp | 14 samc-3.0.2/samc/src/dispersal.cpp | 94 + samc-3.0.2/samc/src/mortality.cpp | 62 - samc-3.0.2/samc/src/samc_types.h |only samc-3.0.2/samc/src/solver-cache.cpp |only samc-3.0.2/samc/src/solver-cache.h |only samc-3.0.2/samc/src/survival.cpp | 19 samc-3.0.2/samc/src/visitation.cpp | 157 ++- samc-3.0.2/samc/tests/testthat/helper-data.R | 21 samc-3.0.2/samc/tests/testthat/test-check.R | 4 samc-3.0.2/samc/tests/testthat/test-cond_passage.R | 13 samc-3.0.2/samc/tests/testthat/test-dispersal.R | 26 samc-3.0.2/samc/tests/testthat/test-distribution.R | 10 samc-3.0.2/samc/tests/testthat/test-mortality.R | 14 samc-3.0.2/samc/tests/testthat/test-samc.R | 4 samc-3.0.2/samc/tests/testthat/test-survival.R | 8 samc-3.0.2/samc/tests/testthat/test-visitation.R | 59 + samc-3.0.2/samc/vignettes/article-circuit-theory.Rmd |only samc-3.0.2/samc/vignettes/data-disconnected.Rmd | 2 samc-3.0.2/samc/vignettes/example-coinflip.Rmd | 14 samc-3.0.2/samc/vignettes/example-maze-part1.Rmd | 42 samc-3.0.2/samc/vignettes/example-maze-part2.Rmd | 22 samc-3.0.2/samc/vignettes/example-maze-part3.Rmd | 20 samc-3.0.2/samc/vignettes/img/ggplot1.png |binary samc-3.0.2/samc/vignettes/img/ggplot2.png |binary samc-3.0.2/samc/vignettes/img/ggplot3.png |binary samc-3.0.2/samc/vignettes/img/ggplot4.png |binary samc-3.0.2/samc/vignettes/img/ggplot5.png |binary samc-3.0.2/samc/vignettes/overview.Rmd | 96 - samc-3.0.2/samc/vignettes/parallel.Rmd | 16 samc-3.0.2/samc/vignettes/performance.Rmd | 29 samc-3.0.2/samc/vignettes/scripts/example-coinflip.R | 4 samc-3.0.2/samc/vignettes/scripts/example-maze.R | 143 +- samc-3.0.2/samc/vignettes/scripts/tutorial-animations.R | 13 samc-3.0.2/samc/vignettes/scripts/tutorial-ggplot.R | 68 - samc-3.0.2/samc/vignettes/troubleshooting.Rmd | 26 samc-3.0.2/samc/vignettes/tutorial-basic.Rmd | 46 samc-3.0.2/samc/vignettes/tutorial-locations.Rmd | 33 samc-3.0.2/samc/vignettes/tutorial-multiple-absorption.Rmd | 51 samc-3.0.2/samc/vignettes/tutorial-temporal.Rmd | 27 144 files changed, 8823 insertions(+), 3718 deletions(-)
Title: Multivariate Synthetic Control Method Using Time Series
Description: Three generalizations of the synthetic control method (which has
already an implementation in package 'Synth') are implemented: first,
'MSCMT' allows for using multiple outcome variables, second, time series
can be supplied as economic predictors, and third, a well-defined
cross-validation approach can be used.
Much effort has been taken to make the implementation as stable as possible
(including edge cases) without losing computational efficiency.
A detailed description of the main algorithms is given in
Becker and Klößner (2018) <doi:10.1016/j.ecosta.2017.08.002>.
Author: Martin Becker [aut, cre] ,
Stefan Kloeßner [aut],
Karline Soetaert [com],
Jack Dongarra [cph],
R.J. Hanson [cph],
K.H. Haskell [cph],
Cleve Moler [cph],
LAPACK authors [cph]
Maintainer: Martin Becker <martin.becker@mx.uni-saarland.de>
Diff between MSCMT versions 1.3.4 dated 2019-11-14 and 1.3.5 dated 2023-02-01
DESCRIPTION | 11 - MD5 | 48 ++--- NEWS | 13 + R/DiD.r | 16 + R/Helpers.r | 135 +++++++++------ R/mscmt.r | 16 + R/ppratio.r | 16 + R/pvalue.r | 16 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/CheckingSynth.R | 10 - inst/doc/CheckingSynth.html | 235 ++++++++++++++------------ inst/doc/UsingTimeSeries.R | 12 - inst/doc/UsingTimeSeries.html | 273 ++++++++++++++++-------------- inst/doc/WorkingWithMSCMT.R | 32 +-- inst/doc/WorkingWithMSCMT.html | 364 +++++++++++++++++++++-------------------- man/MSCMTfunction.Rd | 62 +++++- man/MSCMTpackage.Rd | 1 man/did.Rd | 26 ++ man/ggplot.mscmt.Rd | 47 +++-- man/improveSynth.Rd | 11 + man/listFromLong.Rd | 9 - man/plot.mscmt.Rd | 21 +- man/ppratio.Rd | 26 ++ man/pvalue.Rd | 28 ++- 25 files changed, 852 insertions(+), 576 deletions(-)
Title: Predictions, Comparisons, Slopes, Marginal Means, and Hypothesis
Tests
Description: Compute and plot predictions, slopes, marginal means, and comparisons (contrasts, risk ratios, odds, etc.) for over 70 classes of statistical models in R. Conduct linear and non-linear hypothesis tests, or equivalence tests. Calculate uncertainty estimates using the delta method, bootstrapping, or simulation-based inference.
Author: Vincent Arel-Bundock [aut, cre, cph]
,
Marcio Augusto Diniz [ctb] ,
Noah Greifer [ctb]
Maintainer: Vincent Arel-Bundock <vincent.arel-bundock@umontreal.ca>
Diff between marginaleffects versions 0.8.1 dated 2022-11-23 and 0.9.0 dated 2023-02-01
marginaleffects-0.8.1/marginaleffects/R/align_J_V.R |only marginaleffects-0.8.1/marginaleffects/R/arg_name_change.R |only marginaleffects-0.8.1/marginaleffects/R/attributes.R |only marginaleffects-0.8.1/marginaleffects/R/deltamethod.R |only marginaleffects-0.8.1/marginaleffects/R/deprecate_arg.R |only marginaleffects-0.8.1/marginaleffects/R/find_categorical.R |only marginaleffects-0.8.1/marginaleffects/R/find_variable_class.R |only marginaleffects-0.8.1/marginaleffects/R/format_msg.R |only marginaleffects-0.8.1/marginaleffects/R/get_ci.R |only marginaleffects-0.8.1/marginaleffects/R/get_eti.R |only marginaleffects-0.8.1/marginaleffects/R/get_hdi.R |only marginaleffects-0.8.1/marginaleffects/R/glance.R |only marginaleffects-0.8.1/marginaleffects/R/marginaleffects.R |only marginaleffects-0.8.1/marginaleffects/R/plot_cap.R |only marginaleffects-0.8.1/marginaleffects/R/plot_cco.R |only marginaleffects-0.8.1/marginaleffects/R/plot_cme.R |only 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Title: Lookup for IP Address Information
Description: Enables the user to find the country, region, city, coordinates, zip code, time zone, ISP, domain name, connection type, area code, weather station code, weather station name, mobile, usage type, address type and IAB category that any IP address or hostname originates from. Supported IPv4 and IPv6.
Please visit <https://www.ip2location.com> to learn more. You may also want to visit <https://lite.ip2location.com> for free database download.
This package requires 'IP2Location Python' module. At the terminal, please run 'pip install IP2Location' to install the module.
Author: IP2Location
Maintainer: IP2Location <support@ip2location.com>
Diff between ip2location versions 8.1.1 dated 2023-01-23 and 8.1.2 dated 2023-02-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/IP2Location_plotmap.R | 7 ++++--- 3 files changed, 9 insertions(+), 8 deletions(-)
Title: A Toolkit for Sports Injury Data Analysis
Description: Sports Injury Data analysis aims to identify and describe the
magnitude of the injury problem, and to gain more insights (e.g. determine
potential risk factors) by statistical modelling approaches. The 'injurytools'
package provides standardized routines and utilities that simplify such
analyses. It offers functions for data preparation, informative visualizations
and descriptive and model-based analyses.
Author: Lore Zumeta Olaskoaga [aut, cre]
,
Dae-Jin Lee [aut]
Maintainer: Lore Zumeta Olaskoaga <lzumeta@bcamath.org>
Diff between injurytools versions 1.0.0 dated 2023-01-26 and 1.0.1 dated 2023-02-01
DESCRIPTION | 6 +-- MD5 | 41 +++++++++++----------- NEWS.md |only R/prepare_data.R | 2 - R/sysdata.rda |binary README.md | 19 ++++------ data/injd.rda |binary data/raw_df_exposures.rda |binary inst/doc/estimate-epi-measures.R | 32 ++++++++--------- inst/doc/estimate-epi-measures.Rmd | 46 +++++++++++-------------- inst/doc/estimate-epi-measures.html | 57 +++++++++++++++---------------- inst/doc/prepare-injury-data.html | 32 ++++++++--------- inst/doc/visualize-injury-data.R | 16 ++++---- inst/doc/visualize-injury-data.Rmd | 23 +++++------- inst/doc/visualize-injury-data.html | 21 ++++------- man/figures/README-unnamed-chunk-4-1.png |only tests/testthat/_snaps |only tests/testthat/test-injprev.R | 2 - tests/testthat/test-injsummary.R | 4 +- tests/testthat/test-prepare_data.R | 11 +++-- tests/testthat/test-utils.R | 1 vignettes/estimate-epi-measures.Rmd | 46 +++++++++++-------------- vignettes/visualize-injury-data.Rmd | 23 +++++------- 23 files changed, 184 insertions(+), 198 deletions(-)
Title: Parser for mzML, mzXML, and netCDF Files (Mass Spectrometry
Data)
Description: A tiny parser to extract mass spectra data and metadata table of mass spectrometry acquisition properties from mzML, mzXML and netCDF files introduced in <doi:10.1021/acs.jproteome.2c00120>.
Author: Sadjad Fakouri-Baygi [cre, aut]
,
Dinesh Barupal [aut]
Maintainer: Sadjad Fakouri-Baygi <sadjad.fakouri-baygi@mssm.edu>
Diff between IDSL.MXP versions 1.8 dated 2023-01-06 and 1.9 dated 2023-02-01
DESCRIPTION | 10 +++++----- LICENSE | 2 +- MD5 | 12 ++++++------ R/getScanTable.R | 14 ++++++++++++-- R/peak2list.R | 2 +- inst/CITATION | 13 +++++-------- man/peak2list.Rd | 5 +---- 7 files changed, 31 insertions(+), 27 deletions(-)
Title: Unified Parallel and Distributed Processing in R for Everyone
Description: The purpose of this package is to provide a lightweight and
unified Future API for sequential and parallel processing of R
expression via futures. The simplest way to evaluate an expression
in parallel is to use `x %<-% { expression }` with `plan(multisession)`.
This package implements sequential, multicore, multisession, and
cluster futures. With these, R expressions can be evaluated on the
local machine, in parallel a set of local machines, or distributed
on a mix of local and remote machines.
Extensions to this package implement additional backends for
processing futures via compute cluster schedulers, etc.
Because of its unified API, there is no need to modify any code in order
switch from sequential on the local machine to, say, distributed
processing on a remote compute cluster.
Another strength of this package is that global variables and functions
are automatically identified and exported as needed, making it
straightforward to tweak existing code to make use of futures.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between future versions 1.30.0 dated 2022-12-15 and 1.31.0 dated 2023-02-01
future-1.30.0/future/R/999.DEPRECATED.R |only future-1.30.0/future/R/remote.R |only future-1.30.0/future/man/pid_exists.Rd |only future-1.30.0/future/man/remote.Rd |only future-1.30.0/future/tests/remote.R |only future-1.30.0/future/tests/transparent.R |only future-1.31.0/future/DESCRIPTION | 8 future-1.31.0/future/MD5 | 107 future-1.31.0/future/NAMESPACE | 4 future-1.31.0/future/NEWS.md | 2429 +++++----- future-1.31.0/future/R/000.import.R |only future-1.31.0/future/R/ClusterFuture-class.R | 20 future-1.31.0/future/R/Future-class.R | 121 future-1.31.0/future/R/MulticoreFuture-class.R | 62 future-1.31.0/future/R/UniprocessFuture-class.R | 23 future-1.31.0/future/R/cluster.R | 4 future-1.31.0/future/R/expressions.R | 76 future-1.31.0/future/R/multiprocess.R | 37 future-1.31.0/future/R/resolve.R | 28 future-1.31.0/future/R/utils-immediateCondition.R | 69 future-1.31.0/future/R/utils.R | 539 -- future-1.31.0/future/R/zzz.R | 6 future-1.31.0/future/R/zzz.plan.R | 47 future-1.31.0/future/inst/CITATION | 8 future-1.31.0/future/inst/doc/future-1-overview.md.rsp | 44 future-1.31.0/future/inst/doc/future-2-output.md.rsp | 3 future-1.31.0/future/inst/doc/future-3-topologies.md.rsp | 15 future-1.31.0/future/inst/doc/future-4-issues.html | 29 future-1.31.0/future/inst/doc/future-4-issues.md.rsp | 88 future-1.31.0/future/inst/doc/future-4-non-exportable-objects.md.rsp | 22 future-1.31.0/future/inst/doc/future-5-startup.md.rsp | 10 future-1.31.0/future/man/ClusterFuture-class.Rd | 16 future-1.31.0/future/man/Future-class.Rd | 8 future-1.31.0/future/man/MulticoreFuture-class.Rd | 17 future-1.31.0/future/man/UniprocessFuture-class.Rd | 36 future-1.31.0/future/man/cluster.Rd | 10 future-1.31.0/future/man/multicore.Rd | 7 future-1.31.0/future/man/multiprocess.Rd | 52 future-1.31.0/future/man/multisession.Rd | 7 future-1.31.0/future/man/plan.Rd | 40 future-1.31.0/future/man/readImmediateConditions.Rd | 22 future-1.31.0/future/man/resolve.Rd | 3 future-1.31.0/future/tests/globals,locals.R | 10 future-1.31.0/future/tests/incl/start,load-only.R | 4 future-1.31.0/future/tests/multicore.R | 2 future-1.31.0/future/tests/multiprocess.R | 10 future-1.31.0/future/tests/multisession.R | 10 future-1.31.0/future/tests/plan.R | 1 future-1.31.0/future/tests/relaying.R | 13 future-1.31.0/future/tests/reserved-keyword-functions.R | 5 future-1.31.0/future/tests/rng.R | 21 future-1.31.0/future/tests/utils.R | 51 future-1.31.0/future/vignettes/future-1-overview.md.rsp | 44 future-1.31.0/future/vignettes/future-2-output.md.rsp | 3 future-1.31.0/future/vignettes/future-3-topologies.md.rsp | 15 future-1.31.0/future/vignettes/future-4-issues.md.rsp | 88 future-1.31.0/future/vignettes/future-4-non-exportable-objects.md.rsp | 22 future-1.31.0/future/vignettes/future-5-startup.md.rsp | 10 58 files changed, 2106 insertions(+), 2220 deletions(-)
Title: An Alternative Conflict Resolution Strategy
Description: R's default conflict management system gives the most
recently loaded package precedence. This can make it hard to detect
conflicts, particularly when they arise because a package update
creates ambiguity that did not previously exist. 'conflicted' takes a
different approach, making every conflict an error and forcing you to
choose which function to use.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between conflicted versions 1.1.0 dated 2021-11-26 and 1.2.0 dated 2023-02-01
DESCRIPTION | 23 +++++------ MD5 | 45 ++++++++++++--------- NAMESPACE | 1 NEWS.md | 14 ++++++ R/conflicts.R | 11 +++-- R/disambiguate.R | 62 +++++++++++++++++++++--------- R/favor.R |only R/find.R | 18 ++------ R/package.R | 17 +++++--- R/prefer.R | 57 +++++++++++++++++++-------- R/utils.R | 26 +++++++----- README.md | 29 +++++++------- man/conflict_prefer.Rd | 11 +---- man/conflicted-package.Rd | 4 - man/conflicts_prefer.Rd |only tests/testthat/_snaps/disambiguate.md | 70 ++++++++++++++++++++++++---------- tests/testthat/_snaps/favor.md |only tests/testthat/_snaps/find.md |only tests/testthat/_snaps/prefer.md |only tests/testthat/funmatch/NAMESPACE | 2 tests/testthat/funmatch/R/test.R | 2 tests/testthat/test-disambiguate.R | 21 ++++++++++ tests/testthat/test-favor.R |only tests/testthat/test-find.R | 9 +++- tests/testthat/test-package.R |only tests/testthat/test-prefer.R | 34 +++++++++++++--- tests/testthat/test-shim.R | 21 +++++----- 27 files changed, 318 insertions(+), 159 deletions(-)
Title: Alternative Factor Coding Matrices for Linear Model Formulae
Description: A collection of coding functions as alternatives to the standard
functions in the stats package, which have names starting with 'contr.'. Their
main advantage is that they provide a consistent method for defining marginal
effects in factorial models. In a simple one-way ANOVA model the
intercept term is always the simple average of the class means.
Author: Bill Venables
Maintainer: Bill Venables <Bill.Venables@gmail.com>
Diff between codingMatrices versions 0.3.4 dated 2022-05-03 and 0.4.0 dated 2023-02-01
DESCRIPTION | 9 MD5 | 16 R/code_extra.R | 883 +++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/codingMatrices.R | 5 inst/doc/codingMatrices.Rnw | 5 inst/doc/codingMatrices.pdf |binary man/Codings.Rd | 51 ++ vignettes/codingMatrices.Rnw | 5 9 files changed, 516 insertions(+), 458 deletions(-)
More information about codingMatrices at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-18 0.1.2
2021-06-11 0.1.1