Title: Fisherian and Neymanian Methods for Detecting and Measuring
Treatment Effect Variation
Description: Implements methods developed by Ding, Feller, and Miratrix (2016) <doi:10.1111/rssb.12124> <arXiv:1412.5000>,
and Ding, Feller, and Miratrix (2018) <doi:10.1080/01621459.2017.1407322> <arXiv:1605.06566>
for testing whether there is unexplained variation in treatment effects across observations, and for characterizing
the extent of the explained and unexplained variation in treatment effects. The package includes wrapper functions
implementing the proposed methods, as well as helper functions for analyzing and visualizing the results of the test.
Author: Peng Ding [aut],
Avi Feller [aut],
Ben Fifield [aut, cre],
Luke Miratrix [aut]
Maintainer: Ben Fifield <benfifield@gmail.com>
Diff between hettx versions 0.1.1 dated 2019-03-06 and 0.1.2 dated 2023-02-15
hettx-0.1.1/hettx/tests/testthat/Rplots.pdf |only hettx-0.1.2/hettx/DESCRIPTION | 15 hettx-0.1.2/hettx/MD5 | 39 hettx-0.1.2/hettx/NAMESPACE | 9 hettx-0.1.2/hettx/R/detect_idiosyncratic.R | 4 hettx-0.1.2/hettx/R/helper_stat_calc.R | 6 hettx-0.1.2/hettx/build/vignette.rds |binary hettx-0.1.2/hettx/data/Penn46_ascii.rda |binary hettx-0.1.2/hettx/data/ToyData.rda |binary hettx-0.1.2/hettx/inst/doc/detect_idiosyncratic_vignette.R | 51 hettx-0.1.2/hettx/inst/doc/detect_idiosyncratic_vignette.Rmd | 25 hettx-0.1.2/hettx/inst/doc/detect_idiosyncratic_vignette.html | 612 ++++++-- hettx-0.1.2/hettx/inst/doc/estimate_systematic_vignette.R | 54 hettx-0.1.2/hettx/inst/doc/estimate_systematic_vignette.html | 723 ++++++---- hettx-0.1.2/hettx/man/Penn46_ascii.Rd | 4 hettx-0.1.2/hettx/man/ToyData.Rd | 4 hettx-0.1.2/hettx/man/make.linear.data.Rd | 13 hettx-0.1.2/hettx/man/make.randomized.compliance.dat.Rd | 9 hettx-0.1.2/hettx/man/make.randomized.dat.Rd | 11 hettx-0.1.2/hettx/man/plot.RI.R2.result.Rd | 8 hettx-0.1.2/hettx/vignettes/detect_idiosyncratic_vignette.Rmd | 25 21 files changed, 1085 insertions(+), 527 deletions(-)
Title: Flexible Forest Plots
Description: Simplifies the creation and customization of forest plots (alternatively called dot-and-whisker plots). Input classes accepted by 'forplo' are data.frame, matrix, lm, glm, and coxph. 'forplo' was written in base R and does not depend on other packages.
Author: Vincent ten Cate, PhD [cre, aut]
Maintainer: "Vincent ten Cate, PhD" <vincent10kd@gmail.com>
Diff between forplo versions 0.2.0 dated 2022-04-28 and 0.2.5 dated 2023-02-15
DESCRIPTION | 6 ++-- MD5 | 10 ++++---- NEWS.md | 10 ++++++-- R/forplo.R | 52 ++++++++++++++++++++++++++++++++---------- inst/doc/forplo_vignette.html | 2 - man/forplo.Rd | 3 ++ 6 files changed, 60 insertions(+), 23 deletions(-)
Title: Propensity to Cycle Tool
Description: Functions and example data to teach and
increase the reproducibility of the methods and code underlying
the Propensity to Cycle Tool (PCT), a research project and web application
hosted at <https://www.pct.bike/>.
For an academic paper on the methods,
see Lovelace et al (2017) <doi:10.5198/jtlu.2016.862>.
Author: Robin Lovelace [aut, cre] ,
Layik Hama [aut] ,
Nathanael Sheehan [ctb]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between pct versions 0.9.7 dated 2022-12-06 and 0.9.8 dated 2023-02-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/pct-international.html | 4 ++-- inst/doc/pct.html | 4 ++-- 5 files changed, 16 insertions(+), 12 deletions(-)
Title: Data Sets from "Forecasting: Methods and Applications" by
Makridakis, Wheelwright & Hyndman (1998)
Description: All data sets from "Forecasting: methods and applications" by Makridakis, Wheelwright & Hyndman (Wiley, 3rd ed., 1998) <https://robjhyndman.com/forecasting/>.
Author: Rob Hyndman [aut, cre, cph] ,
Justin Carmody [ctb]
Maintainer: Rob Hyndman <Rob.Hyndman@monash.edu>
Diff between fma versions 2.4 dated 2020-01-14 and 2.5 dated 2023-02-15
DESCRIPTION | 13 - MD5 | 392 ++++++++++++++++++------------ NAMESPACE | 66 ----- NEWS.md | 40 +-- R/advert.R | 30 -- R/advsales.R | 42 --- R/airpass.R | 50 +-- R/beer.R | 9 R/bicoal.R | 10 R/bricksq.R | 18 - R/canadian.R | 5 R/chicken.R | 13 - R/condmilk.R | 18 - R/copper.R | 39 --- R/copper1.R | 7 R/copper2.R | 8 R/copper3.R | 14 - R/cowtemp.R | 12 R/cpimel.R | 12 R/data.R | 3 R/dj.R | 34 -- R/dole.R | 58 ---- R/dowjones.R | 18 - R/eggs.R | 20 - R/eknives.R | 8 R/elco.R | 8 R/elec.R | 58 ---- R/expenditure.R | 10 R/fancy.R | 23 - R/fma-package.R | 2 R/french.R | 8 R/housing.R | 91 ------- R/hsales.R | 26 -- R/hsales2.R | 17 - R/huron.R | 19 - R/ibmclose.R | 38 -- R/input.R | 12 R/internet.R | 16 - R/invent15.R | 11 R/jcars.R | 14 - R/labour.R | 35 -- R/lynx.R | 20 - R/milk.R | 20 - R/mink.R | 16 - R/motion.R | 31 -- R/nail.R | 30 -- R/oilprice.R | 22 - R/paris.R | 8 R/petrol.R | 260 -------------------- R/pigs.R | 29 -- R/plastics.R | 18 - R/pollution.R | 27 -- R/productC.R | 10 R/qelec.R | 10 R/qsales.R | 11 R/sales.R | 8 R/schizo.R | 15 - R/shampoo.R | 12 R/sheep.R | 15 - R/ship.R | 9 R/shipex.R | 7 R/strikes.R | 11 R/telephone.R | 16 - R/ukdeaths.R | 18 - R/usdeaths.R | 15 - R/uselec.R | 25 - R/ustreas.R | 18 - R/wagesuk.R | 78 ------ R/wheat.R | 99 ------- R/wn.R | 12 R/wnoise.R | 8 R/writing.R | 24 - README.md | 4 build/vignette.rds |binary data/advert.rda |only data/advsales.rda |only data/airpass.rda |only data/beer.rda |only data/bicoal.rda |only data/bricksq.rda |only data/canadian.rda |only data/chicken.rda |only data/condmilk.rda |only data/copper.rda |only data/copper1.rda |only data/copper2.rda |only data/copper3.rda |only data/cowtemp.rda |only data/cpimel.rda |only data/dj.rda |only data/dole.rda |only data/dowjones.rda |only data/eggs.rda |only data/eknives.rda |only data/elco.rda |only data/elec.rda |only data/expenditure.rda |only data/fancy.rda |only data/french.rda |only data/housing.rda |only data/hsales.rda |only data/hsales2.rda |only data/huron.rda |only data/ibmclose.rda |only data/input.rda |only data/internet.rda |only data/invent15.rda |only data/jcars.rda |only data/labour.rda |only data/lynx.rda |only data/milk.rda |only data/mink.rda |only data/motion.rda |only data/nail.rda |only data/oilprice.rda |only data/paris.rda |only data/petrol.rda |only data/pigs.rda |only data/plastics.rda |only data/pollution.rda |only data/productC.rda |only data/qelec.rda |only data/qsales.rda |only data/sales.rda |only data/schizo.rda |only data/shampoo.rda |only data/sheep.rda |only data/ship.rda |only data/shipex.rda |only data/strikes.rda |only data/telephone.rda |only data/ukdeaths.rda |only data/usdeaths.rda |only data/uselec.rda |only data/ustreas.rda |only data/wagesuk.rda |only data/wheat.rda |only data/wn.rda |only data/wnoise.rda |only data/writing.rda |only inst/CITATION | 2 inst/doc/fma-vignette.R | 3 inst/doc/fma-vignette.Rmd | 7 inst/doc/fma-vignette.html | 571 ++++++++++++++++++++++++++++----------------- man/advert.Rd | 7 man/advsales.Rd | 5 man/airpass.Rd | 5 man/auto.Rd | 6 man/bank.Rd | 6 man/beer.Rd | 5 man/bicoal.Rd | 5 man/books.Rd | 6 man/boston.Rd | 6 man/bricksq.Rd | 5 man/canadian.Rd | 5 man/capital.Rd | 6 man/cement.Rd | 6 man/chicken.Rd | 5 man/condmilk.Rd | 5 man/copper.Rd | 5 man/copper1.Rd | 5 man/copper2.Rd | 5 man/copper3.Rd | 5 man/cowtemp.Rd | 5 man/cpimel.Rd | 5 man/dexter.Rd | 6 man/dj.Rd | 5 man/dole.Rd | 5 man/dowjones.Rd | 5 man/econsumption.Rd | 6 man/eggs.Rd | 5 man/eknives.Rd | 5 man/elco.Rd | 5 man/elec.Rd | 5 man/expenditure.Rd | 5 man/fancy.Rd | 5 man/fma-package.Rd | 2 man/french.Rd | 5 man/housing.Rd | 7 man/hsales.Rd | 5 man/hsales2.Rd | 5 man/huron.Rd | 5 man/ibm.Rd | 6 man/ibmclose.Rd | 5 man/input.Rd | 5 man/internet.Rd | 5 man/invent15.Rd | 5 man/jcars.Rd | 5 man/kkong.Rd | 6 man/labour.Rd | 5 man/lynx.Rd | 5 man/milk.Rd | 5 man/mink.Rd | 5 man/mortal.Rd | 6 man/motel.Rd | 7 man/motion.Rd | 5 man/nail.Rd | 5 man/oilprice.Rd | 5 man/olympic.Rd | 6 man/ozone.Rd | 6 man/paris.Rd | 5 man/pcv.Rd | 6 man/petrol.Rd | 7 man/pigs.Rd | 5 man/plastics.Rd | 5 man/pollution.Rd | 5 man/productC.Rd | 5 man/pulpprice.Rd | 6 man/qelec.Rd | 5 man/qsales.Rd | 5 man/running.Rd | 4 man/sales.Rd | 5 man/schizo.Rd | 5 man/shampoo.Rd | 5 man/sheep.Rd | 5 man/ship.Rd | 5 man/shipex.Rd | 5 man/strikes.Rd | 5 man/telephone.Rd | 5 man/texasgas.Rd | 6 man/ukdeaths.Rd | 5 man/usdeaths.Rd | 5 man/uselec.Rd | 5 man/ustreas.Rd | 5 man/wagesuk.Rd | 7 man/wheat.Rd | 5 man/wn.Rd | 5 man/wnoise.Rd | 5 man/writing.Rd | 5 vignettes/fma-vignette.Rmd | 7 230 files changed, 1123 insertions(+), 2147 deletions(-)
Title: A Rainclouds Geom for 'ggplot2'
Description: The 'geom_rain()' function adds different geoms together using 'ggplot2' to create raincloud plots.
Author: Nicholas Judd [aut, cre] ,
Jordy van Langen [aut] ,
Micah Allen [ctb] ,
Rogier Kievit [aut]
Maintainer: Nicholas Judd <nickkjudd@gmail.com>
Diff between ggrain versions 0.0.1 dated 2023-02-14 and 0.0.2 dated 2023-02-15
DESCRIPTION | 11 +++++++---- MD5 | 8 ++++---- NEWS.md | 5 +++++ README.md | 17 +++++++++++++---- inst/doc/ggrain.html | 16 ++++++++-------- 5 files changed, 37 insertions(+), 20 deletions(-)
Title: Forest Mensuration and Management
Description: Processing forest inventory data with methods such as simple random sampling, stratified random sampling and systematic sampling. There are also functions for yield and growth predictions and model fitting, linear and nonlinear grouped data fitting, and statistical tests. References: Kershaw Jr., Ducey, Beers and Husch (2016). <doi:10.1002/9781118902028>.
Author: Sollano Rabelo Braga [aut, cre, cph],
Marcio Leles Romarco de Oliveira [aut],
Eric Bastos Gorgens [aut]
Maintainer: Sollano Rabelo Braga <sollanorb@gmail.com>
Diff between forestmangr versions 0.9.4 dated 2021-08-16 and 0.9.5 dated 2023-02-15
forestmangr-0.9.4/forestmangr/man/graybill_f.Rd |only forestmangr-0.9.5/forestmangr/DESCRIPTION | 12 forestmangr-0.9.5/forestmangr/MD5 | 107 - forestmangr-0.9.5/forestmangr/NAMESPACE | 1 forestmangr-0.9.5/forestmangr/NEWS.md | 12 forestmangr-0.9.5/forestmangr/R/classify_site.R | 17 forestmangr-0.9.5/forestmangr/R/exfm1.R | 1 forestmangr-0.9.5/forestmangr/R/exfm2.R | 1 forestmangr-0.9.5/forestmangr/R/exfm3.R | 1 forestmangr-0.9.5/forestmangr/R/exfm5.R | 1 forestmangr-0.9.5/forestmangr/R/exfm6.R | 1 forestmangr-0.9.5/forestmangr/R/lm_resid.R | 47 forestmangr-0.9.5/forestmangr/R/lm_resid_group.R | 25 forestmangr-0.9.5/forestmangr/R/lm_table.R | 109 + forestmangr-0.9.5/forestmangr/R/na_to_0.R |only forestmangr-0.9.5/forestmangr/R/npv_irr.R | 2 forestmangr-0.9.5/forestmangr/R/outliersiqr.R |only forestmangr-0.9.5/forestmangr/R/plot_summarise.R | 2 forestmangr-0.9.5/forestmangr/R/smalianwob.R | 2 forestmangr-0.9.5/forestmangr/R/sprs.R | 34 forestmangr-0.9.5/forestmangr/R/ss_diffs.R | 32 forestmangr-0.9.5/forestmangr/R/strs.R | 32 forestmangr-0.9.5/forestmangr/R/tree_summarise.R | 2 forestmangr-0.9.5/forestmangr/R/vol_summarise.R | 6 forestmangr-0.9.5/forestmangr/README.md | 2 forestmangr-0.9.5/forestmangr/build/vignette.rds |binary forestmangr-0.9.5/forestmangr/data/exfm1.rda |binary forestmangr-0.9.5/forestmangr/data/exfm2.rda |binary forestmangr-0.9.5/forestmangr/data/exfm3.rda |binary forestmangr-0.9.5/forestmangr/data/exfm5.rda |binary forestmangr-0.9.5/forestmangr/data/exfm6.rda |binary forestmangr-0.9.5/forestmangr/inst/doc/eq_group_fit_en.html | 400 +++- forestmangr-0.9.5/forestmangr/inst/doc/eq_group_fit_ptbr.html | 401 +++- forestmangr-0.9.5/forestmangr/inst/doc/invent_vol_plot_en.html | 403 +++- forestmangr-0.9.5/forestmangr/inst/doc/invent_vol_plot_ptbr.html | 402 +++- forestmangr-0.9.5/forestmangr/inst/doc/phyto_ana_en.html | 437 +++-- forestmangr-0.9.5/forestmangr/inst/doc/phyto_ana_ptbr.html | 433 +++-- forestmangr-0.9.5/forestmangr/inst/doc/sampling_en.html | 823 ++++++---- forestmangr-0.9.5/forestmangr/inst/doc/sampling_ptbr.html | 695 +++++--- forestmangr-0.9.5/forestmangr/inst/doc/volume_est_en.html | 403 +++- forestmangr-0.9.5/forestmangr/inst/doc/volume_est_ptbr.html | 374 +++- forestmangr-0.9.5/forestmangr/inst/doc/yield_growth_en.html | 371 +++- forestmangr-0.9.5/forestmangr/inst/doc/yield_growth_ptbr.html | 369 +++- forestmangr-0.9.5/forestmangr/man/Graybill_F.Rd |only forestmangr-0.9.5/forestmangr/man/exfm1.Rd | 57 forestmangr-0.9.5/forestmangr/man/exfm2.Rd | 57 forestmangr-0.9.5/forestmangr/man/exfm3.Rd | 55 forestmangr-0.9.5/forestmangr/man/exfm5.Rd | 55 forestmangr-0.9.5/forestmangr/man/exfm6.Rd | 71 forestmangr-0.9.5/forestmangr/man/lm_resid.Rd | 129 - forestmangr-0.9.5/forestmangr/man/lm_resid_group.Rd | 23 forestmangr-0.9.5/forestmangr/man/lm_table.Rd | 24 forestmangr-0.9.5/forestmangr/man/outliersiqr.Rd |only forestmangr-0.9.5/forestmangr/man/smalianwob.Rd | 2 forestmangr-0.9.5/forestmangr/man/sprs.Rd | 6 forestmangr-0.9.5/forestmangr/man/ss_diffs.Rd | 3 forestmangr-0.9.5/forestmangr/man/strs.Rd | 3 57 files changed, 4675 insertions(+), 1770 deletions(-)
Title: Matching on Generalized Propensity Scores with Continuous
Exposures
Description: Provides a framework for estimating causal effects of a continuous
exposure using observational data, and implementing matching and weighting
on the generalized propensity score.
Wu, X., Mealli, F., Kioumourtzoglou, M.A., Dominici, F. and Braun, D., 2022.
Matching on generalized propensity scores with continuous exposures. Journal
of the American Statistical Association, pp.1-29.
Author: Naeem Khoshnevis [aut, cre] ,
Xiao Wu [aut] ,
Danielle Braun [aut]
Maintainer: Naeem Khoshnevis <nkhoshnevis@g.harvard.edu>
Diff between CausalGPS versions 0.2.9 dated 2022-12-16 and 0.3.0 dated 2023-02-15
DESCRIPTION | 18 - MD5 | 140 +++++++------- NEWS.md | 14 + R/absolute_corr_fun.R | 27 +- R/absolute_weighted_corr_fun.R | 19 -- R/causalgps_package.R | 6 R/causalgps_smooth.R | 24 +- R/check_arguments.R | 25 -- R/check_covar_balance.R | 40 +--- R/check_kolmogorov_smirnov.R | 22 -- R/compile_pseudo_pop.R | 22 +- R/compute_closest_wgps.R | 18 - R/compute_density.R | 2 R/compute_minmax.R | 8 R/compute_outer.R | 6 R/compute_resid.R | 9 R/compute_risk.R | 13 - R/create_matching.R | 25 -- R/create_weighting.R | 2 R/data.R | 2 R/estimate_gps.R | 19 -- R/estimate_hat_vals.R | 7 R/estimate_npmetric_erf.R | 19 -- R/estimate_pmetric_erf.R | 6 R/estimate_semipmetric_erf.R | 4 R/generate_pseudo_pop.R | 135 ++++++-------- R/generate_synthetic_data.R | 20 +- R/generate_wrap_sl_lib.R | 51 ++--- R/matching_l1.R | 41 +--- R/plot.R | 40 ++-- R/print.R | 32 +-- R/set_logger.R | 11 - R/smooth_erf.R | 6 R/train_it.R | 15 - R/utils.R | 8 README.md | 17 - inst/CITATION | 41 ++-- inst/doc/CausalGPS.Rmd | 2 inst/doc/CausalGPS.html | 25 +- inst/doc/Synthetic-Medicare.R | 5 inst/doc/Synthetic-Medicare.Rmd | 6 inst/doc/Synthetic-Medicare.html | 218 ++++++++++------------- man/CausalGPS-package.Rd | 6 man/absolute_corr_fun.Rd | 2 man/check_args.Rd | 3 man/check_args_compile_pseudo_pop.Rd | 2 man/check_covar_balance.Rd | 18 - man/check_kolmogorov_smirnov.Rd | 11 - man/compile_pseudo_pop.Rd | 16 - man/compute_outer.Rd | 4 man/compute_resid.Rd | 2 man/create_matching.Rd | 3 man/estimate_gps.Rd | 2 man/estimate_npmetric_erf.Rd | 3 man/estimate_semipmetric_erf.Rd | 2 man/generate_kernel.Rd | 4 man/generate_pseudo_pop.Rd | 8 man/generate_syn_data.Rd | 2 man/matching_l1.Rd | 5 man/synthetic_us_2010.Rd | 2 tests/testthat/test-absolute_weighted_corr_fun.R | 6 tests/testthat/test-check_arguments.R | 5 tests/testthat/test-check_covar_balance.R | 209 ++++++++++++---------- tests/testthat/test-check_kolmogorov_smirnov.R | 4 tests/testthat/test-compile_pseudo_pop.R | 7 tests/testthat/test-create_weighting.R | 14 - tests/testthat/test-estimate_npmetric_erf.R | 10 - tests/testthat/test-generate_pseudo_pop.R | 44 ---- tests/testthat/test-matching_l1.R | 57 +++--- vignettes/CausalGPS.Rmd | 2 vignettes/Synthetic-Medicare.Rmd | 6 71 files changed, 740 insertions(+), 889 deletions(-)
Title: Summarises Package & Function Usage
Description: Consistent with 'knitr' syntax highlighting, 'usedthese' adds a
summary table of R package & function usage to a Quarto document and
enables aggregation of usage across a Quarto website. Learn more about
'usedthese' at <https://cgoo4.github.io/usedthese/>.
Author: Carl Goodwin [aut, cre]
Maintainer: Carl Goodwin <carl.goodwin@quantumjitter.com>
Diff between usedthese versions 0.2.0 dated 2023-01-21 and 0.3.0 dated 2023-02-15
DESCRIPTION | 14 ++++----- MD5 | 27 +++++++++--------- NEWS.md | 6 ++++ R/used_here.R | 31 +++++++-------------- R/used_there.R | 2 - README.md | 3 +- inst/CITATION | 16 ++++------- inst/WORDLIST | 4 ++ inst/doc/multipage.html | 4 +- inst/doc/usedthese.R | 10 ++++--- inst/doc/usedthese.Rmd | 14 ++++++--- inst/doc/usedthese.html | 50 ++++++++++++++++++++--------------- tests/testthat/test-used_here.R | 14 ++++----- tests/testthat/testthat-problems.rds |only vignettes/usedthese.Rmd | 14 ++++++--- 15 files changed, 114 insertions(+), 95 deletions(-)
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.1-2 dated 2023-01-26 and 3.2-1 dated 2023-02-15
DESCRIPTION | 8 +-- MD5 | 44 +++++++++--------- NAMESPACE | 6 ++ NEWS | 40 ++++++++++++++++ R/Gcom.R | 7 ++ R/Kcom.R | 7 ++ R/kppm.R | 19 +++++-- R/ppmclass.R | 24 ++++++---- R/psst.R | 7 ++ R/psstA.R | 14 +++-- R/psstG.R | 11 ++-- R/residppm.R | 7 +- R/rppm.R | 26 ++++++++++ R/slrm.R | 6 ++ R/summary.ppm.R | 12 +++-- R/update.ppm.R | 44 +++++++++++++----- inst/CITATION | 98 ++++++++++++++++------------------------- inst/doc/packagesizes.txt | 2 man/methods.dppm.Rd | 12 ++--- man/rppm.Rd | 1 man/spatstat.model-internal.Rd | 2 man/update.dppm.Rd |only man/update.kppm.Rd | 2 man/update.rppm.Rd |only 24 files changed, 257 insertions(+), 142 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Identifying Patient Social Risk from Administrative Health Care
Data
Description: Social risks are increasingly becoming a critical component of health
care research. One of the most common ways to identify social needs is by using
ICD-10-CM "Z-codes." This package identifies social risks using varying taxonomies
of ICD-10-CM Z-codes from administrative health care data. The conceptual
taxonomies come from:
Centers for Medicare and Medicaid Services (2021) <https://www.cms.gov/files/document/zcodes-infographic.pdf>,
Reidhead (2018) <https://web.mhanet.com/>,
A Arons, S DeSilvey, C Fichtenberg, L Gottlieb (2018) <https://sirenetwork.ucsf.edu/tools-resources/resources/compendium-medical-terminology-codes-social-risk-factors>.
Author: Wyatt Bensken [aut, cre]
Maintainer: Wyatt Bensken <wpb27@case.edu>
Diff between socialrisk versions 0.5.0 dated 2022-03-11 and 0.5.1 dated 2023-02-15
DESCRIPTION | 11 +++--- MD5 | 16 ++++----- NEWS.md | 4 ++ R/util-checks.R | 2 - README.md | 9 ++++- inst/doc/socialrisk.R | 4 -- inst/doc/socialrisk.Rmd | 4 -- inst/doc/socialrisk.html | 78 +++++++++++++++++++++++++++++++++++++---------- vignettes/socialrisk.Rmd | 4 -- 9 files changed, 91 insertions(+), 41 deletions(-)
Title: Visualization of Restricted Cubic Splines
Description: Restricted Cubic Splines were performed to explore the shape of association form of "U, inverted U,
L" shape and test linearity or non-linearity base on "Cox,Logistic,linear,quasipoisson" regression, and auto output Restricted Cubic Splines figures.
rcssci package could automatically draw RCS graphics with Y-axis "OR,HR,RR,beta".
The Restricted Cubic Splines method were based on
Suli Huang (2022) <doi:10.1016/j.ecoenv.2022.113183>,Amit Kaura (2019) <doi:10.1136/bmj.l6055>,
and Harrell Jr (2015, ISBN:978-3-319-19424-0 (Print) 978-3-319-19425-7 (Online)).
Author: Zhiqiang Nie [aut, cre, cph] ,
JunZhang [ctb],
Chaolei Chen [ctb]
Maintainer: Zhiqiang Nie <niezhiqiang@gdph.org.cn>
Diff between rcssci versions 0.2.0 dated 2022-11-07 and 0.4.0 dated 2023-02-15
DESCRIPTION | 9 ++++---- MD5 | 44 +++++++++++++++++++++++++----------------- NAMESPACE | 5 ++++ R/rcs_cox.lshap.R | 4 +-- R/rcs_cox.nshap.R | 4 +-- R/rcs_cox.prob.R | 4 +-- R/rcs_cox.ushap.R | 4 +-- R/rcs_linear.lshap.R | 4 +-- R/rcs_linear.nshap.R | 4 +-- R/rcs_linear.prob.R | 4 +-- R/rcs_linear.ushap.R | 4 +-- R/rcs_logistic.lshap.R | 4 +-- R/rcs_logistic.nshap.R | 4 +-- R/rcs_logistic.prob.R | 4 +-- R/rcs_logistic.ushap.R | 4 +-- R/rcs_quasipoisson.lshap.R |only R/rcs_quasipoisson.nshap.R |only R/rcs_quasipoisson.prob.R |only R/rcs_quasipoisson.ushap.R |only R/rcssci_cox.R | 9 ++++---- R/rcssci_linear.R | 9 ++++---- R/rcssci_logistic.R | 9 ++++---- R/rcssci_quasipoisson.R |only man/rcs_quasipoisson.lshap.Rd |only man/rcs_quasipoisson.nshap.Rd |only man/rcs_quasipoisson.prob.Rd |only man/rcs_quasipoisson.ushap.Rd |only man/rcssci_quasipoisson.Rd |only 28 files changed, 76 insertions(+), 57 deletions(-)
Title: Filter Based Feature Selection for 'mlr3'
Description: Extends 'mlr3' with filter methods for feature selection.
Besides standalone filter methods built-in methods of any
machine-learning algorithm are supported. Partial scoring of
multivariate filter methods is supported.
Author: Patrick Schratz [aut] ,
Michel Lang [cre, aut] ,
Bernd Bischl [aut] ,
Martin Binder [aut]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between mlr3filters versions 0.7.0 dated 2023-01-06 and 0.7.1 dated 2023-02-15
DESCRIPTION | 6 ++--- MD5 | 33 ++++++++++++++++------------ NEWS.md | 8 +++++- R/Filter.R | 4 +-- R/FilterCarScore.R | 4 +-- R/FilterCorrelation.R | 16 ++++++++++++- R/FilterInformationGain.R | 4 +++ R/FilterKruskalTest.R | 25 +++++++++++++++++++-- R/FilterPermutation.R | 2 - R/FilterRelief.R | 11 +++++++++ R/helper.R | 27 ++++++++++++++++++++++ man/mlr_filters_correlation.Rd | 8 ++++++ man/mlr_filters_kruskal_test.Rd | 8 ++++++ man/mlr_filters_permutation.Rd | 2 - man/mlr_filters_relief.Rd | 7 +++++ tests/testthat/test_FilterCorreltation.R |only tests/testthat/test_FilterInformationGain.R |only tests/testthat/test_FilterKruskalTest.R |only tests/testthat/test_FilterRelief.R |only tests/testthat/test_mlr3spatiotempcv.R |only 20 files changed, 138 insertions(+), 27 deletions(-)
Title: Miscellaneous Helper Tools for Epidemiologists
Description: Contains tools for formatting inline code, renaming redundant
columns, aggregating age categories, adding survey weights, finding the earliest
date of an event, plotting z-curves, generating population counts and
calculating proportions with confidence intervals. This is part of the
'R4Epis' project <https://r4epis.netlify.app/>.
Author: Alexander Spina [aut] ,
Zhian N. Kamvar [aut, cre] ,
Dirk Schumacher [aut],
Kate Doyle [ctb]
Maintainer: Zhian N. Kamvar <zkamvar@gmail.com>
Diff between epikit versions 0.1.2 dated 2020-09-07 and 0.1.5 dated 2023-02-15
DESCRIPTION | 39 + MD5 | 52 +- NAMESPACE | 28 + NEWS.md | 19 R/add_weights_cluster.R |only R/add_weights_strata.R |only R/age-categories.R | 6 R/epikit-package.R | 10 R/find_date_cause.R |only R/gen_polygon.R |only R/gen_population.R |only R/inline_fun.R | 24 - R/unite_ci.R | 24 - R/zcurve.R |only README.md | 363 ++++++++++-------- build/vignette.rds |binary inst/doc/intro.R | 74 ++- inst/doc/intro.html | 605 ++++++++++++------------------ inst/extdata |only man/add_weights_cluster.Rd |only man/add_weights_strata.Rd |only man/epikit-package.Rd | 13 man/find_date_cause.Rd |only man/fmt_ci.Rd | 37 + man/gen_polygon.Rd |only man/gen_population.Rd |only man/rmdhunks/introduction.Rmd | 141 ++++-- man/unite_ci.Rd | 10 man/zcurve.Rd |only tests/testthat/test-add_weights_cluster.R |only tests/testthat/test-gen_polygon.R |only tests/testthat/test-inline_fun.R | 20 tests/testthat/test-proportion.R | 46 +- tests/testthat/test-unite_ci.R | 10 tests/testthat/test-zcurve.R |only 35 files changed, 795 insertions(+), 726 deletions(-)
Title: Fitting Differential Equations to Time Series Data
Description: Use numerical optimization to fit ordinary differential equations (ODEs) to time series data to examine the dynamic relationships between variables or the characteristics of a dynamical system. It can now be used to estimate the parameters of ODEs up to second order. See <https://github.com/yueqinhu/defit> for details.
Author: Yueqin Hu [aut, cre],
Qingshan Liu [aut]
Maintainer: Yueqin Hu <yueqinhu@bnu.edu.cn>
Diff between deFit versions 0.1.0 dated 2023-02-06 and 0.1.2 dated 2023-02-15
deFit-0.1.0/deFit/tests/testthat/Rplots.pdf |only deFit-0.1.2/deFit/DESCRIPTION | 6 deFit-0.1.2/deFit/MD5 | 13 - deFit-0.1.2/deFit/R/Slover_BinFirst_func.R | 22 +- deFit-0.1.2/deFit/R/Solver_UniSec_func.R | 20 + deFit-0.1.2/deFit/R/deFit.R | 271 +++++++++++++------------- deFit-0.1.2/deFit/man/defit.Rd | 3 deFit-0.1.2/deFit/tests/testthat/test-defit.R | 29 ++ 8 files changed, 200 insertions(+), 164 deletions(-)
Title: Datasets and Code Examples from P. J. Aphalo's "Learn R" Book
Description: Data, scripts and code from chunks used as examples in the book
"Learn R: As a Language" by Pedro J. Aphalo.
ISBN 9780367182533 (pbk); ISBN 9780367182557 (hbk); ISBN 9780429060342 (ebk).
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between learnrbook versions 1.0.2 dated 2021-07-04 and 1.0.2-1 dated 2023-02-15
DESCRIPTION | 10 MD5 | 20 - README.md | 26 + build/vignette.rds |binary data/pkgs-in-book.rda |binary data/volcano-example.rda |binary data/weather-wk-25-2019-tb.rda |binary data/wind-data.rda |binary inst/CITATION | 2 inst/doc/user-guide.html | 539 +++++++++++++++++++++++++++++++++-------- man/learnrbook-package.Rd | 4 11 files changed, 477 insertions(+), 124 deletions(-)
Title: Generates Incidence Matrices and Bipartite Graphs
Description: Functions to generate incidence matrices and bipartite graphs that have (1) a fixed fill rate, (2) given marginal sums, (3) marginal sums that follow given distributions, or (4) represent bill sponsorships in the US Congress <doi:10.31219/osf.io/ectms>. It can also generate an incidence matrix from an adjacency matrix, or bipartite graph from a unipartite graph, via a social process mirroring team, group, or organization formation <doi:10.48550/arXiv.2204.13670>.
Author: Zachary Neal [aut, cre]
Maintainer: Zachary Neal <zpneal@msu.edu>
Diff between incidentally versions 1.0.1 dated 2022-08-05 and 1.0.2 dated 2023-02-15
DESCRIPTION | 6 - MD5 | 36 +++--- NEWS.md | 9 + R/incidence.from.adjacency.R | 3 R/incidence.from.congress.R | 70 +++++++++---- README.md | 4 build/partial.rdb |binary inst/CITATION | 46 ++++++-- inst/doc/congress.R | 6 - inst/doc/congress.Rmd | 19 ++- inst/doc/congress.html | 209 ++++++++++++++++++++-------------------- inst/doc/incidentally.R | 6 - inst/doc/incidentally.Rmd | 10 - inst/doc/incidentally.html | 162 +++++++++++++++---------------- man/incidence.from.adjacency.Rd | 4 man/incidence.from.congress.Rd | 17 ++- vignettes/congress.Rmd | 19 ++- vignettes/incidentally.Rmd | 10 - vignettes/incidentally.bib | 16 ++- 19 files changed, 369 insertions(+), 283 deletions(-)
Title: Command Line Optional and Positional Argument Parser
Description: A command line parser to
be used with 'Rscript' to write "#!" shebang scripts that gracefully
accept positional and optional arguments and automatically generate usage.
Author: Trevor L Davis [aut, cre] ,
Allen Day [ctb] ,
Python Software Foundation [ctb] ,
Paul Newell [ctb]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between argparse versions 2.2.1 dated 2022-12-08 and 2.2.2 dated 2023-02-15
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 +++++++- R/argparse.R | 15 +++++++++++---- inst/doc/argparse.html | 38 +++++++++++++++++++------------------- tests/testthat/test-argparse.R | 7 ++++++- 6 files changed, 52 insertions(+), 34 deletions(-)
Title: Stable Isotope Bayesian Ellipses in R
Description: Fits bi-variate ellipses to stable isotope data using Bayesian
inference with the aim being to describe and compare their isotopic
niche.
Author: Andrew Jackson [aut, cre] ,
Andrew Parnell [aut]
Maintainer: Andrew Jackson <jacksoan@tcd.ie>
Diff between SIBER versions 2.1.6 dated 2021-04-13 and 2.1.7 dated 2023-02-15
SIBER-2.1.6/SIBER/R/siberDensityplot.R |only SIBER-2.1.6/SIBER/inst/CITATION |only SIBER-2.1.7/SIBER/DESCRIPTION | 22 SIBER-2.1.7/SIBER/MD5 | 71 - SIBER-2.1.7/SIBER/NEWS.md | 9 SIBER-2.1.7/SIBER/R/createSiberObject.R | 2 SIBER-2.1.7/SIBER/R/datalist.R | 25 SIBER-2.1.7/SIBER/R/siberKapow.R | 6 SIBER-2.1.7/SIBER/R/siberdensityplot.R |only SIBER-2.1.7/SIBER/build/vignette.rds |binary SIBER-2.1.7/SIBER/data/mongoose.rda |only SIBER-2.1.7/SIBER/inst/doc/Centroid-Vectors.html | 489 +++++--- SIBER-2.1.7/SIBER/inst/doc/Customising-Plots-Manually.html | 357 ++++- SIBER-2.1.7/SIBER/inst/doc/Ellipse-Overlap.html | 365 ++++-- SIBER-2.1.7/SIBER/inst/doc/Introduction-to-SIBER.html | 476 ++++++- SIBER-2.1.7/SIBER/inst/doc/Plot-SIA-ggplot2.R | 3 SIBER-2.1.7/SIBER/inst/doc/Plot-SIA-ggplot2.Rmd | 4 SIBER-2.1.7/SIBER/inst/doc/Plot-SIA-ggplot2.html | 606 +++++++--- SIBER-2.1.7/SIBER/inst/doc/Plot-posterior-ellipses.R | 3 SIBER-2.1.7/SIBER/inst/doc/Plot-posterior-ellipses.Rmd | 5 SIBER-2.1.7/SIBER/inst/doc/Plot-posterior-ellipses.html | 349 ++++- SIBER-2.1.7/SIBER/inst/doc/Points-Inside-Outside-Ellipse.R | 5 SIBER-2.1.7/SIBER/inst/doc/Points-Inside-Outside-Ellipse.Rmd | 7 SIBER-2.1.7/SIBER/inst/doc/Points-Inside-Outside-Ellipse.html | 443 +++++-- SIBER-2.1.7/SIBER/inst/doc/Test-convergence.html | 373 ++++-- SIBER-2.1.7/SIBER/inst/doc/kapow-example.R |only SIBER-2.1.7/SIBER/inst/doc/kapow-example.Rmd |only SIBER-2.1.7/SIBER/inst/doc/kapow-example.html |only SIBER-2.1.7/SIBER/inst/doc/siber-comparing-communities.html | 392 +++++- SIBER-2.1.7/SIBER/inst/doc/siber-comparing-populations.html | 514 ++++++-- SIBER-2.1.7/SIBER/man/allCentroidVectors.Rd | 2 SIBER-2.1.7/SIBER/man/correctionsdemo.Rd | 4 SIBER-2.1.7/SIBER/man/extractPosteriorMeans.Rd | 2 SIBER-2.1.7/SIBER/man/geese2demo.Rd | 2 SIBER-2.1.7/SIBER/man/mongoose.Rd |only SIBER-2.1.7/SIBER/man/siberDensityPlot.Rd | 4 SIBER-2.1.7/SIBER/man/siberEllipses.Rd | 2 SIBER-2.1.7/SIBER/vignettes/Plot-SIA-ggplot2.Rmd | 4 SIBER-2.1.7/SIBER/vignettes/Plot-posterior-ellipses.Rmd | 5 SIBER-2.1.7/SIBER/vignettes/Points-Inside-Outside-Ellipse.Rmd | 7 SIBER-2.1.7/SIBER/vignettes/kapow-example.Rmd |only 41 files changed, 3516 insertions(+), 1042 deletions(-)
Title: Grammar of Graphics for Linear Model Diagnostic Plots
Description: Allows for easy creation of diagnostic plots for a variety of model objects using the Grammar of Graphics.
Provides functionality for both individual diagnostic plots and an array of four standard diagnostic plots.
Author: Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between gglm versions 1.0.0 dated 2022-11-23 and 1.0.1 dated 2023-02-15
DESCRIPTION | 10 +++++----- MD5 | 6 +++++- man/figures |only 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Cluster Wild Bootstrapping for Meta-Analysis
Description: Conducts single coefficient tests and multiple-contrast hypothesis tests of meta-regression models using cluster wild bootstrapping, based on methods examined in Joshi, Pustejovsky, and Beretvas (2022) <DOI:10.1002/jrsm.1554>.
Author: Megha Joshi [aut, cre] ,
James Pustejovsky [aut] ,
Pierce Cappelli [aut]
Maintainer: Megha Joshi <megha.j456@gmail.com>
Diff between wildmeta versions 0.3.0 dated 2022-10-07 and 0.3.1 dated 2023-02-15
DESCRIPTION | 14 +- MD5 | 29 ++--- NAMESPACE | 5 NEWS.md | 6 + R/S3_methods.R | 7 + R/Wald_test_wildmeta.R | 26 +++- R/globals.R | 2 R/plot_wildmeta.R | 2 R/rma.R | 59 +++++++--- R/robu.R | 24 +++- inst/doc/cwbmeta.html | 137 ++++++++++++------------- tests/testthat/test-parallelization.R | 58 ++++++++++ tests/testthat/test-rma-mv-methods.R | 186 ++++++++++++++++++---------------- tests/testthat/test-rma-uni-methods.R | 134 +++++++++++++++++++++--- tests/testthat/test-robu-methods.R | 142 +++++++++++++++++++++++-- tests/testthat/testdata |only 16 files changed, 594 insertions(+), 237 deletions(-)
Title: Tools for 2D and 3D Plots of Single and Multi-Objective
Linear/Integer Programming Models
Description: Make 2D and 3D plots of linear programming (LP),
integer linear programming (ILP), or mixed integer linear programming (MILP) models
with up to three objectives. Plots of both the solution and criterion space are possible.
For instance the non-dominated (Pareto) set for bi-objective LP/ILP/MILP programming models
(see vignettes for an overview). The package also contains an function for checking if a point
is inside the convex hull.
Author: Lars Relund Nielsen [aut, cre]
Maintainer: Lars Relund Nielsen <lars@relund.dk>
Diff between gMOIP versions 1.4.8 dated 2023-01-26 and 1.4.9 dated 2023-02-15
DESCRIPTION | 10 +++++----- MD5 | 28 ++++++++++++++-------------- NEWS.md | 4 ++++ inst/WORDLIST | 1 + inst/doc/bi-objective_2x.html | 32 ++++++++++++++++---------------- inst/doc/bi-objective_3x_ex1.html | 36 ++++++++++++++++++------------------ inst/doc/intro.R | 1 - inst/doc/intro.Rmd | 1 - inst/doc/intro.html | 16 ++++++++-------- inst/doc/polytope_2d.html | 4 ++-- inst/doc/tri-objective.R | 1 - inst/doc/tri-objective.Rmd | 1 - inst/doc/tri-objective.html | 12 ++++++------ vignettes/intro.Rmd | 1 - vignettes/tri-objective.Rmd | 1 - 15 files changed, 74 insertions(+), 75 deletions(-)
Title: 'ggplot2' Based Plots with Statistical Details
Description: Extension of 'ggplot2', 'ggstatsplot' creates graphics with
details from statistical tests included in the plots themselves. It
provides an easier syntax to generate information-rich plots for
statistical analysis of continuous (violin plots, scatterplots,
histograms, dot plots, dot-and-whisker plots) or categorical (pie and
bar charts) data. Currently, it supports the most common types of
statistical approaches and tests: parametric, nonparametric, robust,
and Bayesian versions of t-test/ANOVA, correlation analyses,
contingency table analysis, meta-analysis, and regression analyses.
References: Patil (2021) <doi:10.21105/joss.03236>.
Author: Indrajeet Patil [cre, aut, cph]
,
Chuck Powell [ctb]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between ggstatsplot versions 0.10.0 dated 2022-11-27 and 0.11.0 dated 2023-02-15
ggstatsplot-0.10.0/ggstatsplot/tests/spelling.R |only ggstatsplot-0.10.0/ggstatsplot/vignettes/web_only/reporting.Rmd |only ggstatsplot-0.11.0/ggstatsplot/DESCRIPTION | 27 - ggstatsplot-0.11.0/ggstatsplot/MD5 | 254 +++++----- ggstatsplot-0.11.0/ggstatsplot/NEWS.md | 14 ggstatsplot-0.11.0/ggstatsplot/R/combine_plots.R | 6 ggstatsplot-0.11.0/ggstatsplot/R/extract_stats.R | 36 - ggstatsplot-0.11.0/ggstatsplot/R/ggbarstats.R | 30 - ggstatsplot-0.11.0/ggstatsplot/R/ggbetweenstats.R | 35 - ggstatsplot-0.11.0/ggstatsplot/R/ggbetweenstats_helpers.R | 12 ggstatsplot-0.11.0/ggstatsplot/R/ggcoefstats.R | 6 ggstatsplot-0.11.0/ggstatsplot/R/ggcorrmat.R | 101 --- ggstatsplot-0.11.0/ggstatsplot/R/ggdotplotstats.R | 30 - ggstatsplot-0.11.0/ggstatsplot/R/gghistostats.R | 33 - ggstatsplot-0.11.0/ggstatsplot/R/gghistostats_helpers.R | 10 ggstatsplot-0.11.0/ggstatsplot/R/ggpiestats.R | 38 - ggstatsplot-0.11.0/ggstatsplot/R/ggpiestats_ggbarstats_helpers.R | 4 ggstatsplot-0.11.0/ggstatsplot/R/ggscatterstats.R | 31 - ggstatsplot-0.11.0/ggstatsplot/R/ggwithinstats.R | 50 - ggstatsplot-0.11.0/ggstatsplot/R/theme_ggstatsplot.R | 1 ggstatsplot-0.11.0/ggstatsplot/R/utils.R | 10 ggstatsplot-0.11.0/ggstatsplot/README.md | 141 ----- ggstatsplot-0.11.0/ggstatsplot/inst/WORDLIST | 5 ggstatsplot-0.11.0/ggstatsplot/inst/doc/additional.html | 4 ggstatsplot-0.11.0/ggstatsplot/inst/doc/ggstatsplot.Rmd | 1 ggstatsplot-0.11.0/ggstatsplot/inst/doc/ggstatsplot.html | 51 -- ggstatsplot-0.11.0/ggstatsplot/man/combine_plots.Rd | 6 ggstatsplot-0.11.0/ggstatsplot/man/dot-grouped_list.Rd | 4 ggstatsplot-0.11.0/ggstatsplot/man/extract_stats.Rd | 34 - ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggbetweenstats1-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggbetweenstats2-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggcoefstats1-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggpiestats2-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggscatterstats2-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggwithinstats1-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/figures/README-ggwithinstats2-1.png |binary ggstatsplot-0.11.0/ggstatsplot/man/ggbarstats.Rd | 4 ggstatsplot-0.11.0/ggstatsplot/man/ggbetweenstats.Rd | 10 ggstatsplot-0.11.0/ggstatsplot/man/ggcoefstats.Rd | 6 ggstatsplot-0.11.0/ggstatsplot/man/ggcorrmat.Rd | 31 - ggstatsplot-0.11.0/ggstatsplot/man/ggdotplotstats.Rd | 6 ggstatsplot-0.11.0/ggstatsplot/man/gghistostats.Rd | 6 ggstatsplot-0.11.0/ggstatsplot/man/ggpiestats.Rd | 4 ggstatsplot-0.11.0/ggstatsplot/man/ggscatterstats.Rd | 11 ggstatsplot-0.11.0/ggstatsplot/man/ggwithinstats.Rd | 12 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggbarstats.Rd | 13 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggbetweenstats.Rd | 8 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggcorrmat.Rd | 35 - ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggdotplotstats.Rd | 10 ggstatsplot-0.11.0/ggstatsplot/man/grouped_gghistostats.Rd | 10 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggpiestats.Rd | 10 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggscatterstats.Rd | 12 ggstatsplot-0.11.0/ggstatsplot/man/grouped_ggwithinstats.Rd | 8 ggstatsplot-0.11.0/ggstatsplot/man/md-fragments |only ggstatsplot-0.11.0/ggstatsplot/man/theme_ggstatsplot.Rd | 1 ggstatsplot-0.11.0/ggstatsplot/tests/testthat.R | 13 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/box-plot.svg | 10 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/default-plot-as-expected.svg | 12 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/mean-shown-with-scarce-data.svg | 2 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/modification-with-ggplot2-works-as-expected.svg | 14 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/outlier-tagging-works.svg | 58 +- ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggbetweenstats/violin-plot.svg | 4 ggstatsplot-0.11.0/ggstatsplot/tests/testthat/_snaps/ggcoefstats/chi2-statistic.svg | 40 - 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Title: Recording Synchronisation, Call Detection and Assignment, Audio
Analysis
Description: Intended to analyse recordings from multiple microphones (e.g., backpack
microphones in captive setting). It allows users to align recordings even if there is non-linear
drift of several minutes between them. A call detection and assignment pipeline can be used
to find vocalisations and assign them to the vocalising individuals (even if the vocalisation
is picked up on multiple microphones). The tracing and measurement functions allow for detailed
analysis of the vocalisations and filtering of noise. Finally, the package includes a function
to run spectrographic cross correlation, which can be used to compare vocalisations. It also
includes multiple other functions related to analysis of vocal behaviour.
Author: Simeon Q. Smeele [cre, aut],
Stephen A. Tyndel [ctb]
Maintainer: Simeon Q. Smeele <simeonqs@hotmail.com>
Diff between callsync versions 0.0.3 dated 2023-01-20 and 0.0.6 dated 2023-02-15
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 16 +++++++++++++++- R/align.R | 11 ++++++++--- R/call.assign.R | 7 ++++--- inst |only man/align.Rd | 6 ++++-- tests/testthat/Rplots.pdf |binary 8 files changed, 41 insertions(+), 18 deletions(-)
Title: Estimate Univariate Gaussian and Student's t Mixture
Autoregressive Models
Description: Maximum likelihood estimation of univariate Gaussian Mixture Autoregressive (GMAR),
Student's t Mixture Autoregressive (StMAR), and Gaussian and Student's t Mixture Autoregressive (G-StMAR) models,
quantile residual tests, graphical diagnostics, forecast and simulate from GMAR, StMAR and G-StMAR processes.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2015) <doi:10.1111/jtsa.12108>,
Mika Meitz, Daniel Preve, Pentti Saikkonen (2023) <doi:10.1080/03610926.2021.1916531>,
Savi Virolainen (2022) <doi:10.1515/snde-2020-0060>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between uGMAR versions 3.4.3 dated 2022-06-07 and 3.4.4 dated 2023-02-15
DESCRIPTION | 12 ++-- MD5 | 110 ++++++++++++++++++++--------------------- NEWS.md | 4 + R/MAINest.R | 10 +-- R/argumentChecks.R | 10 +-- R/geneticAlgorithm.R | 12 ++-- R/loglikelihood.R | 10 +-- R/quantileResiduals.R | 10 +-- R/uncondMoments.R | 10 +-- README.md | 23 ++++---- inst/doc/uGMARpaper.pdf |binary man/GAfit.Rd | 12 ++-- man/GSMAR.Rd | 24 ++++---- man/LR_test.Rd | 10 +-- man/Wald_test.Rd | 10 +-- man/add_data.Rd | 10 +-- man/alt_gsmar.Rd | 10 +-- man/change_parametrization.Rd | 10 +-- man/condMoments.Rd | 10 +-- man/cond_moment_plot.Rd | 10 +-- man/cond_moments.Rd | 10 +-- man/condmomentPlot.Rd | 10 +-- man/diagnosticPlot.Rd | 10 +-- man/diagnostic_plot.Rd | 10 +-- man/fitGSMAR.Rd | 10 +-- man/get_alpha_mt.Rd | 10 +-- man/get_ar_roots.Rd | 10 +-- man/get_regime_autocovs.Rd | 10 +-- man/get_regime_means.Rd | 10 +-- man/get_regime_vars.Rd | 10 +-- man/get_test_Omega.Rd | 10 +-- man/isStationary.Rd | 10 +-- man/is_stationary.Rd | 10 +-- man/is_stationary_int.Rd | 10 +-- man/iterate_more.Rd | 10 +-- man/loglikelihood.Rd | 10 +-- man/loglikelihood_int.Rd | 15 ++--- man/mixingWeights.Rd | 10 +-- man/mixing_weights.Rd | 10 +-- man/mixing_weights_int.Rd | 10 +-- man/predict.gsmar.Rd | 10 +-- man/profile_logliks.Rd | 10 +-- man/quantileResidualPlot.Rd | 10 +-- man/quantileResidualTests.Rd | 10 +-- man/quantileResiduals.Rd | 10 +-- man/quantile_residual_plot.Rd | 10 +-- man/quantile_residual_tests.Rd | 18 +++--- man/quantile_residuals.Rd | 10 +-- man/quantile_residuals_int.Rd | 10 +-- man/simulate.gsmar.Rd | 10 +-- man/simulateGSMAR.Rd | 10 +-- man/stmar_to_gstmar.Rd | 10 +-- man/swap_parametrization.Rd | 10 +-- man/uncond_moments.Rd | 10 +-- man/uncond_moments_int.Rd | 10 +-- vignettes/refs.bib | 46 +++++++++-------- 56 files changed, 368 insertions(+), 358 deletions(-)
Title: Non-Negative Tensor Decomposition
Description: Some functions for performing non-negative matrix factorization, non-negative CANDECOMP/PARAFAC (CP) decomposition, non-negative Tucker decomposition, and generating toy model data. See Andrzej Cichock et al (2009) and the reference section of GitHub README.md <https://github.com/rikenbit/nnTensor>, for details of the methods.
Author: Koki Tsuyuzaki [aut, cre],
Itoshi Nikaido [aut]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between nnTensor versions 1.1.10 dated 2022-11-15 and 1.1.12 dated 2023-02-15
DESCRIPTION | 12 ++--- MD5 | 56 ++++++++++++++++---------- NAMESPACE | 5 -- R/NMF.R | 22 +++------- R/NMTF.R | 4 - R/NTD.R | 22 ++++------ R/NTF.R | 24 ++++++----- R/jNMF.R | 8 +-- R/plotTensor2D.R | 2 R/plotTensor3D.R | 2 R/recTensor.R | 2 R/siNMF.R | 8 +-- build/partial.rdb |binary build/vignette.rds |only inst/NEWS | 9 ++++ inst/doc |only man/NTD.Rd | 24 +++++------ man/NTF.Rd | 17 +++----- man/plot.NMF.Rd | 18 -------- man/recTensor.Rd | 9 ++-- tests/testthat/test_NTF.R | 6 +- tests/testthat/test_mask_NMF.R | 84 ++++++++++++++++++++-------------------- tests/testthat/test_mask_NTD.R | 22 +++++----- tests/testthat/test_recTensor.R | 11 ++--- vignettes |only 25 files changed, 183 insertions(+), 184 deletions(-)
Title: Harmonizing Various Comorbidity, Multimorbidity, and Frailty
Measures
Description: Identifying comorbidities, frailty, and multimorbidity in claims
and administrative data is often a duplicative process.
The functions contained in this package are meant to first prepare the data to a format
acceptable by all other packages, then provide a uniform and simple approach to
generate comorbidity and multimorbidity metrics based on these claims data. The package
is ever evolving to include new metrics, and is always looking for new measures to include.
The citations used in this package include the following publications:
Anne Elixhauser, Claudia Steiner, D. Robert Harris, Rosanna M. Coffey (1998) <doi:10.1097/00005650-199801000-00004>,
Brian J Moore, Susan White, Raynard Washington, et al. (2017) <doi:10.1097/MLR.0000000000000735>,
Mary E. Charlson, Peter Pompei, Kathy L. Ales, C. Ronald MacKenzie (1987) <doi:10.1016/0021-9681(87)90171-8>,
Richard A. Deyo, Daniel C. Cherkin, Marcia A. Ciol (1992) <doi:10.1016/0895-4356(92)90133-8>,
Hude Quan, Vijaya [...truncated...]
Author: Wyatt Bensken [aut, cre]
Maintainer: Wyatt Bensken <wpb27@case.edu>
Diff between multimorbidity versions 0.5.0 dated 2021-08-20 and 0.5.1 dated 2023-02-15
DESCRIPTION | 10 ++-- MD5 | 22 ++++----- NEWS.md | 11 ++++ R/i9-i10-wide-data.R | 2 R/prepare-data.R | 1 R/util-checks.R | 2 README.md | 6 ++ build/vignette.rds |binary inst/doc/multimorbidity.R | 7 +- inst/doc/multimorbidity.Rmd | 9 +-- inst/doc/multimorbidity.html | 102 +++++++++++++++++++++++-------------------- vignettes/multimorbidity.Rmd | 9 +-- 12 files changed, 100 insertions(+), 81 deletions(-)
More information about multimorbidity at CRAN
Permanent link
Title: Information Matrices for 'lmeStruct' and 'glsStruct' Objects
Description: Provides analytic derivatives and information matrices for
fitted linear mixed effects (lme) models and generalized least squares (gls) models
estimated using lme() (from package 'nlme') and gls() (from package 'nlme'), respectively.
The package includes functions for estimating the sampling variance-covariance of variance
component parameters using the inverse Fisher information. The variance components include
the parameters of the random effects structure (for lme models), the variance structure,
and the correlation structure. The expected and average forms of the Fisher information matrix
are used in the calculations, and models estimated by full maximum likelihood or
restricted maximum likelihood are supported. The package also includes a function for estimating
standardized mean difference effect sizes (Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>)
based on fitted lme or gls models.
Author: James Pustejovsky [aut] ,
Man Chen [aut, cre]
Maintainer: Man Chen <manchen9005@gmail.com>
Diff between lmeInfo versions 0.3.0 dated 2022-10-24 and 0.3.1 dated 2023-02-15
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 4 build/partial.rdb |binary build/vignette.rds |binary inst/doc/Information-matrices-for-fitted-LME-models.html | 146 +++++++-------- tests/testthat/test-dfs-sensitivity.R | 1 tests/testthat/test-separate-random-effects.R | 23 +- tests/testthat/test-three-level-models.R | 1 9 files changed, 107 insertions(+), 92 deletions(-)
Title: Genesys PGR Client
Description: Access data on plant genetic resources from genebanks around the world published on Genesys (<https://www.genesys-pgr.org>).
Your use of data is subject to terms and conditions available at <https://www.genesys-pgr.org/content/legal/terms>.
Author: Global Crop Diversity Trust [cph],
Matija Obreza [aut, cre],
Nora Castaneda [ctb]
Maintainer: Matija Obreza <matija.obreza@croptrust.org>
Diff between genesysr versions 1.0.1 dated 2022-12-04 and 1.1.0 dated 2023-02-15
DESCRIPTION | 18 ++- MD5 | 27 +++-- NAMESPACE | 5 + NEWS.md | 5 + R/api-client.R | 26 +++-- R/filters.R | 18 +++ R/genesys.R | 185 +++++++++++++++++++++++++++++++++++++++- inst/doc/tutorial.html | 115 ++++++++++++------------ inst/doc/validation.html | 18 +-- man/dot-fetch_csv_page.Rd |only man/dot-list_accessions_page.Rd | 1 man/filter_INSTCODE.Rd |only man/get_accessions.Rd | 3 man/list_crops.Rd |only man/list_institutes.Rd |only man/list_species.Rd |only man/mcpd_filter.Rd | 3 17 files changed, 322 insertions(+), 102 deletions(-)
Title: Sparse Vector Field Consensus for Vector Field Learning
Description: The sparse vector field consensus
(SparseVFC) algorithm (Ma et al., 2013 <doi:10.1016/j.patcog.2013.05.017>) for robust vector
field learning. Largely translated from the Matlab functions in <https://github.com/jiayi-ma/VFC>.
Author: Jingmeng Cui [aut, cre]
Maintainer: Jingmeng Cui <jingmeng.cui@outlook.com>
Diff between SparseVFC versions 0.1.0 dated 2022-05-27 and 0.1.1 dated 2023-02-15
DESCRIPTION | 10 +-- MD5 | 22 +++---- NEWS.md | 8 ++ R/SparseVFC.R | 9 +-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/demo.R | 4 + inst/doc/demo.Rmd | 4 + inst/doc/demo.html | 149 ++++++++++++++++++++++++++++------------------------- man/norm_vecs.Rd | 6 +- man/predict.VFC.Rd | 2 vignettes/demo.Rmd | 4 + 12 files changed, 121 insertions(+), 97 deletions(-)
Title: Visualization and Tools for Ichimoku Kinko Hyo Strategies
Description: An implementation of 'Ichimoku Kinko Hyo', also commonly known as
'cloud charts'. Static and interactive visualizations with tools for
creating, backtesting and development of quantitative 'ichimoku' strategies.
As described in Sasaki (1996, ISBN:4925152009), the technique is a refinement
on candlestick charting, originating from Japan and now in widespread use in
technical analysis worldwide. Translating as 'one-glance equilibrium chart',
it allows the price action and market structure of financial securities to
be determined 'at-a-glance'. Incorporates an interface with the OANDA
fxTrade API <https://developer.oanda.com/> for retrieving historical and
live streaming price data for major currencies, metals, commodities,
government bonds and stock indices.
Author: Charlie Gao [aut, cre] ,
Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>
Diff between ichimoku versions 1.4.4 dated 2023-01-09 and 1.4.5 dated 2023-02-15
DESCRIPTION | 10 ++++----- MD5 | 22 ++++++++++---------- NAMESPACE | 2 - NEWS.md | 9 +++++++- R/ichimoku-package.R | 4 ++- R/methods.R | 46 +++++++++++++++++------------------------- R/mltools.R | 33 ++++++++++++++++++------------ R/oanda.R | 20 ++++++------------ R/switch.R | 8 ++----- man/mlgrid.Rd | 16 +++++++++----- src/shikokuchuo.c | 4 +-- tests/testthat/test-mltools.R | 2 - 12 files changed, 90 insertions(+), 86 deletions(-)
Title: Estimate Gaussian and Student's t Mixture Vector Autoregressive
Models
Description: Unconstrained and constrained maximum likelihood estimation of structural and reduced form
Gaussian mixture vector autoregressive, Student's t mixture vector autoregressive, and Gaussian and Student's t
mixture vector autoregressive models, quantile residual tests, graphical diagnostics,
simulations, forecasting, and estimation of generalized impulse response function and generalized
forecast error variance decomposition.
Leena Kalliovirta, Mika Meitz, Pentti Saikkonen (2016) <doi:10.1016/j.jeconom.2016.02.012>,
Savi Virolainen (2022) <arXiv:2007.04713>,
Savi Virolainen (2022) <arXiv:2109.13648>.
Author: Savi Virolainen [aut, cre]
Maintainer: Savi Virolainen <savi.virolainen@helsinki.fi>
Diff between gmvarkit versions 2.0.5 dated 2022-08-19 and 2.0.6 dated 2023-02-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/doc/gmvarkit-vignette.pdf |binary tests/testthat/test_argumentChecks.R | 26 +++++++++++++++----------- 5 files changed, 27 insertions(+), 19 deletions(-)
Title: Fast and Cached Import of Data from 'Quandl' Using the 'json
API'
Description: Imports time series data from the 'Quandl' database <https://data.nasdaq.com/>. The package uses the 'json api' at <https://data.nasdaq.com/search>, local caching ('memoise' package) and the tidy format by default.
Also allows queries of databases, allowing the user to see which time series are available for each database id. In short, it is an alternative to package 'Quandl', with faster data importation in the tidy/long format.
Author: Marcelo S. Perlin
Maintainer: Marcelo S. Perlin <marceloperlin@gmail.com>
Diff between GetQuandlData versions 0.1.0 dated 2019-10-20 and 1.0.0 dated 2023-02-15
GetQuandlData-0.1.0/GetQuandlData/R/db_fcts.R |only GetQuandlData-0.1.0/GetQuandlData/R/fcts.R |only GetQuandlData-1.0.0/GetQuandlData/DESCRIPTION | 17 GetQuandlData-1.0.0/GetQuandlData/MD5 | 35 - GetQuandlData-1.0.0/GetQuandlData/NAMESPACE | 1 GetQuandlData-1.0.0/GetQuandlData/NEWS.md | 7 GetQuandlData-1.0.0/GetQuandlData/R/database.R |only GetQuandlData-1.0.0/GetQuandlData/R/get_guandl_series.R |only GetQuandlData-1.0.0/GetQuandlData/R/utils.R | 13 GetQuandlData-1.0.0/GetQuandlData/README.md | 16 GetQuandlData-1.0.0/GetQuandlData/build/vignette.rds |binary GetQuandlData-1.0.0/GetQuandlData/inst/doc/getquandldata-vignette-introduction.R | 20 GetQuandlData-1.0.0/GetQuandlData/inst/doc/getquandldata-vignette-introduction.Rmd | 6 GetQuandlData-1.0.0/GetQuandlData/inst/doc/getquandldata-vignette-introduction.html | 323 +++++----- GetQuandlData-1.0.0/GetQuandlData/man/get_Quandl_series.Rd | 21 GetQuandlData-1.0.0/GetQuandlData/man/get_cache_folder.Rd |only GetQuandlData-1.0.0/GetQuandlData/man/get_database_info.Rd | 2 GetQuandlData-1.0.0/GetQuandlData/man/get_single_Quandl.Rd | 16 GetQuandlData-1.0.0/GetQuandlData/tests |only GetQuandlData-1.0.0/GetQuandlData/vignettes/getquandldata-vignette-introduction.Rmd | 6 20 files changed, 285 insertions(+), 198 deletions(-)
Title: Secure in-Browser Storage for 'Shiny' Inputs and Variables
Description: Store persistent and synchronized data from 'Shiny' inputs within the browser in a secure format. Refresh 'Shiny' applications and preserve user-inputs over multiple sessions. A database-like storage format is implemented using 'Dexie.js' <https://dexie.org>, a minimal wrapper for 'IndexedDB'. Transfer browser link parameters to 'Shiny' input or output values.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between shinyStorePlus versions 0.8 dated 2022-11-21 and 0.9 dated 2023-02-15
DESCRIPTION | 8 ++--- MD5 | 24 ++++++++--------- NEWS.md | 13 +++++++-- R/seeex.R | 2 - R/setup.R | 9 +++--- README.md | 37 ++++++++++++++++++++++----- inst/doc/introduction_to_shinystoreplus.html | 4 +- inst/doc/shinystoreplus_v08.html | 4 +- inst/doc/using_shinystoreplus.html | 4 +- inst/example/browserLinkToInput/ui.R | 5 ++- man/seeexample.Rd | 2 - man/setupStorage.Rd | 13 ++++++++- man/shinyStorePlus-package.Rd | 2 - 13 files changed, 86 insertions(+), 41 deletions(-)
More information about shinyStorePlus at CRAN
Permanent link
More information about moderate.mediation at CRAN
Permanent link
Title: Automated Generation of Data-Informed GLM Models in Task-Based
fMRI Data Analysis
Description: Analysis of task-related functional magnetic resonance imaging (fMRI) activity at the level of individual participants is commonly based on general linear modelling (GLM) that allows us to estimate to what extent the blood oxygenation level dependent (BOLD) signal can be explained by task response predictors specified in the GLM model. The predictors are constructed by convolving the hypothesised timecourse of neural activity with an assumed hemodynamic response function (HRF). To get valid and precise estimates of task response, it is important to construct a model of neural activity that best matches actual neuronal activity. The construction of models is most often driven by predefined assumptions on the components of brain activity and their duration based on the task design and specific aims of the study. However, our assumptions about the onset and duration of component processes might be wrong and can also differ across brain regions. This can result in inappropriate or suboptim [...truncated...]
Author: Jure Demsar [cre, aut],
Nina Purg [aut],
Grega Repovs [aut]
Maintainer: Jure Demsar <jure.demsar@fri.uni-lj.si>
Diff between autohrf versions 1.1.0 dated 2022-11-19 and 1.1.2 dated 2023-02-15
DESCRIPTION | 8 MD5 | 100 - NAMESPACE | 72 - NEWS.md | 58 - R/data.R | 174 +-- R/events.R | 244 ++-- R/hrf.R | 150 +- R/modelling.R | 2246 ++++++++++++++++++++-------------------- R/signal.R | 64 - README.md | 22 build/vignette.rds |binary inst/doc/automated_search.R | 90 - inst/doc/automated_search.Rmd | 160 +- inst/doc/automated_search.html | 919 ++++++++-------- inst/doc/flanker_analysis.R | 198 +-- inst/doc/flanker_analysis.Rmd | 274 ++-- inst/doc/flanker_analysis.html | 1181 ++++++++++----------- inst/doc/manual_evaluation.R | 80 - inst/doc/manual_evaluation.Rmd | 142 +- inst/doc/manual_evaluation.html | 915 ++++++++-------- inst/doc/swm_analysis.R | 356 +++--- inst/doc/swm_analysis.Rmd | 424 +++---- inst/doc/swm_analysis.html | 1529 +++++++++++++-------------- man/autohrf-datasets.Rd | 196 +-- man/autohrf.Rd | 204 +-- man/convolve_events.Rd | 84 - man/convolve_hrf.Rd | 38 man/create_boynton_hrf.Rd | 42 man/create_child.Rd | 86 - man/create_first_generation.Rd | 46 man/create_new_generation.Rd | 96 - man/create_spm_hrf.Rd | 42 man/downsample.Rd | 38 man/evaluate_model.Rd | 124 +- man/fit_to_constraints.Rd | 154 +- man/get_best_models.Rd | 96 - man/get_parents.Rd | 34 man/plot_best_models.Rd | 94 - man/plot_events.Rd | 38 man/plot_fitness.Rd | 86 - man/plot_model.Rd | 84 - man/run_model.Rd | 56 tests/testthat.R | 16 tests/testthat/test_events.R | 104 - tests/testthat/test_hrf.R | 56 tests/testthat/test_modelling.R | 234 ++-- tests/testthat/test_signal.R | 30 vignettes/automated_search.Rmd | 160 +- vignettes/flanker_analysis.Rmd | 274 ++-- vignettes/manual_evaluation.Rmd | 142 +- vignettes/swm_analysis.Rmd | 424 +++---- 51 files changed, 6238 insertions(+), 6246 deletions(-)
Title: Glide Component for Shiny Applications
Description: Insert Glide JavaScript component into Shiny applications for
carousel or assistant-like user interfaces.
Author: Julien Barnier [aut, cre]
Maintainer: Julien Barnier <julien.barnier@cnrs.fr>
Diff between shinyglide versions 0.1.3 dated 2021-06-11 and 0.1.4 dated 2023-02-15
shinyglide-0.1.3/shinyglide/R/dependencies.R |only shinyglide-0.1.3/shinyglide/R/onLoad.R |only shinyglide-0.1.3/shinyglide/inst/www |only shinyglide-0.1.4/shinyglide/DESCRIPTION | 10 shinyglide-0.1.4/shinyglide/MD5 | 109 -- shinyglide-0.1.4/shinyglide/NAMESPACE | 3 shinyglide-0.1.4/shinyglide/NEWS.md | 16 shinyglide-0.1.4/shinyglide/R/elements.R | 11 shinyglide-0.1.4/shinyglide/README.md | 31 shinyglide-0.1.4/shinyglide/build/vignette.rds |binary shinyglide-0.1.4/shinyglide/inst/doc/a_introduction.html | 246 +++--- shinyglide-0.1.4/shinyglide/inst/doc/b_conditionals.html | 268 ++++--- shinyglide-0.1.4/shinyglide/inst/doc/c_custom_controls.html | 366 +++++----- shinyglide-0.1.4/shinyglide/inst/examples/04_custom_controls/app.R | 1 shinyglide-0.1.4/shinyglide/inst/packer |only shinyglide-0.1.4/shinyglide/man/glide.Rd | 3 16 files changed, 565 insertions(+), 499 deletions(-)
Title: R Functions for Generalized Simulated Annealing
Description: Performs search for global minimum of a very complex non-linear
objective function with a very large number of optima.
Author: Sylvain Gubian, Yang Xiang, Brian Suomela, Julia Hoeng, PMP SA.
Maintainer: Sylvain Gubian <DL.RSupport@pmi.com>
Diff between GenSA versions 1.1.7 dated 2018-01-17 and 1.1.8 dated 2023-02-15
GenSA-1.1.7/GenSA/man/GenSA-package.Rd |only GenSA-1.1.7/GenSA/src/init.c |only GenSA-1.1.8/GenSA/DESCRIPTION | 12 GenSA-1.1.8/GenSA/MD5 | 20 - GenSA-1.1.8/GenSA/NAMESPACE | 10 GenSA-1.1.8/GenSA/NEWS | 111 +++-- GenSA-1.1.8/GenSA/R/GenSA.R | 622 ++++++++++++++++++++------------- GenSA-1.1.8/GenSA/inst/CITATION | 30 - GenSA-1.1.8/GenSA/man/GenSA.Rd | 337 +++++++++-------- GenSA-1.1.8/GenSA/src/Caller.cpp | 15 GenSA-1.1.8/GenSA/src/Caller.h | 2 GenSA-1.1.8/GenSA/src/Utils.h | 3 12 files changed, 670 insertions(+), 492 deletions(-)
Title: Client for the 'DHIS2' Web API
Description: Connect and pull data from a 'DHIS2 (District Health Information Software 2)' instance into R.
Author: Robinson Amanyiraho [cre, aut, cph]
Maintainer: Robinson Amanyiraho <amanyiraho@gmail.com>
Diff between dhis2r versions 0.1.0 dated 2023-02-11 and 0.1.1 dated 2023-02-15
DESCRIPTION | 7 LICENSE | 4 MD5 | 48 - NAMESPACE | 18 NEWS.md | 3 R/connect.R | 514 +++++++++---------- R/data.R | 26 R/dhis2r-package.R | 24 R/get_analytics.R | 64 +- R/get_metadata.R | 236 ++++---- R/get_user_info.R | 40 - R/utils.R | 16 README.md | 225 ++++---- build/vignette.rds |binary data/relative_periods.rda |binary inst/doc/dhis2r.R | 141 ++--- inst/doc/dhis2r.Rmd | 268 +++++----- inst/doc/dhis2r.html | 1115 ++++++++++++++++++++---------------------- inst/logo/logo.R | 24 man/Dhis2r.Rd | 412 +++++++-------- man/dhis2r-package.Rd | 50 - man/relative_periods.Rd | 46 - tests/testthat.R | 8 tests/testthat/test-connect.R | 97 +-- vignettes/dhis2r.Rmd | 268 +++++----- 25 files changed, 1837 insertions(+), 1817 deletions(-)
Title: Headers for the 'xtensor' Library
Description: The 'xtensor' C++ library for numerical analysis with
multi-dimensional array expressions is provided as a header-only
C++14 library. It offers an extensible expression system enabling
lazy broadcasting; an API following the idioms of the C++ standard
library; and tools to manipulate array expressions and build upon 'xtensor'.
Author: Johan Mabille, Sylvain Corlay and Wolf Vollprecht
Maintainer: Sylvain Corlay <sylvain.corlay@gmail.com>
Diff between xtensor versions 0.13.2-0 dated 2021-03-01 and 0.14.1-0 dated 2023-02-15
xtensor-0.13.2-0/xtensor/inst/include/xsimd |only xtensor-0.13.2-0/xtensor/inst/include/xtensor |only xtensor-0.13.2-0/xtensor/inst/include/xtensor-r |only xtensor-0.13.2-0/xtensor/inst/include/xtl |only xtensor-0.14.1-0/xtensor/DESCRIPTION | 7 xtensor-0.14.1-0/xtensor/MD5 | 194 ------------------------ xtensor-0.14.1-0/xtensor/README.md | 71 ++------ xtensor-0.14.1-0/xtensor/tools/vendor | 10 - 8 files changed, 36 insertions(+), 246 deletions(-)
Title: Extract Remote Sensing Vegetation Phenology
Description: The merits of 'TIMESAT' and 'phenopix' are adopted. Besides, a simple and
growing season dividing method and a practical snow elimination method
based on Whittaker were proposed. 7 curve fitting methods and 4 phenology
extraction methods were provided. Parameters boundary are considered for
every curve fitting methods according to their ecological meaning.
And 'optimx' is used to select best optimization method for different
curve fitting methods.
Reference:
Kong, D., (2020). R package: A state-of-the-art Vegetation Phenology extraction
package, phenofit version 0.3.1, <doi:10.5281/zenodo.5150204>;
Kong, D., Zhang, Y., Wang, D., Chen, J., & Gu, X. (2020). Photoperiod Explains
the Asynchronization Between Vegetation Carbon Phenology and Vegetation Greenness
Phenology. Journal of Geophysical Research: Biogeosciences, 125(8), e2020JG005636.
<doi:10.1029/2020JG005636>;
Kong, D., Zhang, Y., Gu, X., & Wang, D. (2019). A robust method for reconstructing
global MODIS EVI ti [...truncated...]
Author: Dongdong Kong [aut, cre],
Mingzhong Xiao [aut],
Yongqiang Zhang [aut],
Xihui Gu [aut],
Jianjian Cui [aut]
Maintainer: Dongdong Kong <kongdd.sysu@gmail.com>
Diff between phenofit versions 0.3.7 dated 2022-11-07 and 0.3.8 dated 2023-02-15
DESCRIPTION | 14 - MD5 | 56 ++-- NAMESPACE | 2 NEWS.md | 4 R/D.R | 340 ++++++++++++------------- R/PhenoDeriv.R | 216 +++++++-------- R/PhenoTrs.R | 316 +++++++++++------------ R/curvefit.R | 216 +++++++-------- R/doubleLogistics-init_param.R | 500 ++++++++++++++++++------------------- R/optim_pheno.R | 320 +++++++++++------------ R/phenofit-package.R | 12 R/roughFit.R | 330 ++++++++++++------------ R/season_input.R | 306 +++++++++++----------- R/tools.R | 296 ++++++++++----------- R/tools_plyr.R | 22 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/phenofit-procedures.html | 3 man/PhenoDeriv.Rd | 92 +++--- man/PhenoGu.Rd | 146 +++++----- man/PhenoKl.Rd | 128 ++++----- man/PhenoTrs.Rd | 140 +++++----- man/brks2rfit.Rd | 56 ++-- man/curvefit0.Rd | 38 +- man/cutoff.Rd | 52 +-- man/roughFit.Rd | 390 ++++++++++++++-------------- src/Makevars | 2 src/Makevars.win | 2 tests/testthat/test-PhenoExtract.R | 134 ++++----- 29 files changed, 2072 insertions(+), 2061 deletions(-)
Title: Methods for Checking the Markov Condition in Multi-State
Survival Data
Description: The inference in multi-state models is traditionally performed under
a Markov assumption that claims that past and future of the process
are independent given the present state. In this package, we
consider tests of the Markov assumption that are applicable to
general multi-state models. Three approaches using existing
methodology are considered: a simple method based on including
covariates depending on the history in Cox models for the transition
intensities; methods based on measuring the discrepancy of the
non-Markov estimators of the transition probabilities to the
Markov Aalen-Johansen estimators; and, finally, methods that were
developed by considering summaries from families of log-rank
statistics where patients are grouped by the state occupied of the
process at a particular time point (see Soutinho G, Meira-Machado L
(2021) <doi:10.1007/s00180-021-01139-7> and Titman AC, Putter H
(2020) <doi:10.1093/biostatistics/kxaa030>).
Author: Gustavo Soutinho [aut, cre] ,
Luis Meira-Machado [aut]
Maintainer: Gustavo Soutinho <gustavosoutinho@sapo.pt>
Diff between markovMSM versions 0.1.2 dated 2023-01-05 and 0.1.3 dated 2023-02-15
DESCRIPTION | 10 +-- MD5 | 10 +-- NAMESPACE | 2 R/AUC.test.R | 109 ++++++++++++++++++++++++++++++++------- inst/NEWS.Rd | 15 ++++- inst/doc/Vignette-markovMSM.html | 35 +++++------- 6 files changed, 130 insertions(+), 51 deletions(-)
Title: Easily Extracting Information About Your Data
Description: Makes it easy to display descriptive information on a data
set. Getting an easy overview of a data set by displaying and
visualizing sample information in different tables (e.g., time and
scope conditions). The package also provides publishable 'LaTeX' code
to present the sample information.
Author: Cosima Meyer [cre, aut],
Dennis Hammerschmidt [aut]
Maintainer: Cosima Meyer <cosima.meyer@gmail.com>
Diff between overviewR versions 0.0.11 dated 2022-08-06 and 0.0.13 dated 2023-02-15
overviewR-0.0.11/overviewR/R/overview_print.R |only overviewR-0.0.11/overviewR/man/overview_print.Rd |only overviewR-0.0.13/overviewR/DESCRIPTION | 8 overviewR-0.0.13/overviewR/MD5 | 68 - overviewR-0.0.13/overviewR/NAMESPACE | 2 overviewR-0.0.13/overviewR/NEWS.md | 11 overviewR-0.0.13/overviewR/R/overview_crossplot.R | 28 overviewR-0.0.13/overviewR/R/overview_crosstab.R | 2 overviewR-0.0.13/overviewR/R/overview_latex.R |only overviewR-0.0.13/overviewR/R/overview_na.R | 4 overviewR-0.0.13/overviewR/R/overview_overlap.R | 8 overviewR-0.0.13/overviewR/R/overview_tab.R | 2 overviewR-0.0.13/overviewR/README.md | 317 +++++--- overviewR-0.0.13/overviewR/inst/doc/getting-started.Rmd | 2 overviewR-0.0.13/overviewR/inst/doc/getting-started.html | 120 +-- overviewR-0.0.13/overviewR/inst/doc/overviewR_vignette.R | 52 - overviewR-0.0.13/overviewR/inst/doc/overviewR_vignette.Rmd | 56 - overviewR-0.0.13/overviewR/inst/doc/overviewR_vignette.html | 363 +++++----- overviewR-0.0.13/overviewR/man/figures/CheatSheet_overviewR.pdf |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-22-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-23-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-24-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-26-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-28-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-30-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-31-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-32-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-33-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-37-1.png |binary overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-38-1.png |only overviewR-0.0.13/overviewR/man/figures/unnamed-chunk-39-1.png |only overviewR-0.0.13/overviewR/man/overview_crossplot.Rd | 8 overviewR-0.0.13/overviewR/man/overview_crosstab.Rd | 2 overviewR-0.0.13/overviewR/man/overview_latex.Rd |only overviewR-0.0.13/overviewR/man/overview_tab.Rd | 2 overviewR-0.0.13/overviewR/tests/testthat/test-check_output.R | 34 overviewR-0.0.13/overviewR/vignettes/getting-started.Rmd | 2 overviewR-0.0.13/overviewR/vignettes/overviewR_vignette.Rmd | 56 - 38 files changed, 663 insertions(+), 484 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-27 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-28 0.1.0
Title: R2 Statistic
Description: R2 statistic for significance test. Variance and covariance of R2 values used to assess the 95% CI and p-value of the R2 difference.
Author: Hong Lee [aut, cph],
Moksedul Momin [aut, cre, cph]
Maintainer: Moksedul Momin <cvasu.momin@gmail.com>
Diff between r2redux versions 1.0.12 dated 2022-10-09 and 1.0.13 dated 2023-02-15
DESCRIPTION | 7 ++++--- MD5 | 6 +++--- R/r2_var2.r | 31 ++++++++++++++++++++++++++++--- man/r2_var.Rd | 28 +++++++++++++++++++++++++++- 4 files changed, 62 insertions(+), 10 deletions(-)