Sat, 25 Feb 2023

Package MPV updated to version 1.62 with previous version 1.61 dated 2023-02-17

Title: Data Sets from Montgomery, Peck and Vining
Description: Most of this package consists of data sets from the textbook Introduction to Linear Regression Analysis (3rd ed), by Montgomery, Peck and Vining. Some additional data sets and functions are also included.
Author: W.J. Braun and S. MacQueen
Maintainer: W.J. Braun <john.braun@ubc.ca>

Diff between MPV versions 1.61 dated 2023-02-17 and 1.62 dated 2023-02-25

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Package LSX updated to version 1.3.1 with previous version 1.3.0 dated 2023-01-21

Title: Semi-Supervised Algorithm for Document Scaling
Description: A word embeddings-based semi-supervised model for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>. LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove). It can generate word vectors on a users-provided corpus or incorporate a pre-trained word vectors.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>

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Package gmmsslm updated to version 1.1.2 with previous version 1.1.1 dated 2023-02-16

Title: Semi-Supervised Gaussian Mixture Model with a Missing-Data Mechanism
Description: The algorithm of semi-supervised learning is based on finite Gaussian mixture models and includes a mechanism for handling missing data. It aims to fit a g-class Gaussian mixture model using maximum likelihood. The algorithm treats the labels of unclassified features as missing data, building on the framework introduced by Rubin (1976) <doi:10.2307/2335739> for missing data analysis. By taking into account the dependencies in the missing pattern, the algorithm provides more information for determining the optimal classifier, as specified by Bayes' rule.
Author: Ziyang Lyu [aut, cre], Daniel Ahfock [aut], Ryan Thompson [aut], Geoffrey J. McLachlan [aut]
Maintainer: Ziyang Lyu <ziyang.lyu@unsw.edu.au>

Diff between gmmsslm versions 1.1.1 dated 2023-02-16 and 1.1.2 dated 2023-02-25

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Package dietr updated to version 1.1.4 with previous version 1.1.3 dated 2021-12-14

Title: Diet Estimated Trophic Levels
Description: Estimates fractional trophic level from quantitative and qualitative diet data and calculates electivity indices in R. Borstein (2020) <doi:10.1007/s10750-020-04417-5>.
Author: Samuel R. Borstein <sam@borstein.com>
Maintainer: Samuel R. Borstein <sam@borstein.com>

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Package slackr updated to version 3.3.1 with previous version 3.3.0 dated 2023-02-20

Title: Send Messages, Images, R Objects and Files to 'Slack' Channels/Users
Description: 'Slack' <https://slack.com/> provides a service for teams to collaborate by sharing messages, images, links, files and more. Functions are provided that make it possible to interact with the 'Slack' platform 'API'. When you need to share information or data from R, rather than resort to copy/ paste in e-mails or other services like 'Skype' <https://www.skype.com/en/>, you can use this package to send well-formatted output from multiple R objects and expressions to all teammates at the same time with little effort. You can also send images from the current graphics device, R objects, and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb], Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb], Gregory Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb], Jonathan Sidi [aut, ctb], Matt Kaye [aut, ctb], Xinye Li [ctb], A [...truncated...]
Maintainer: Matt Kaye <mrkaye97@gmail.com>

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Package hpfilter updated to version 1.0.1 with previous version 1.0.0 dated 2023-02-24

Title: The One- And Two-Sided Hodrick-Prescott Filter
Description: Provides two functions that implement the one-sided and two-sided versions of the Hodrick-Prescott filter. The one-sided version is a Kalman filter-based implementation, whereas the two- sided version uses sparse matrices for improved efficiency. References: Hodrick, R. J., and Prescott, E. C. (1997) <doi:10.2307/2953682> Mcelroy, T. (2008) <doi:10.1111/j.1368-423X.2008.00230.x> Meyer-Gohde, A. (2010) <https://ideas.repec.org/c/dge/qmrbcd/181.html> For more references, see the vignette.
Author: Alexandru Monahov
Maintainer: Alexandru Monahov <alexandru.monahov@proton.me>

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Package FedData updated to version 3.0.2 with previous version 3.0.1 dated 2022-11-28

Title: Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Description: Functions to automate downloading geospatial data available from several federated data sources (mainly sources maintained by the US Federal government). Currently, the package enables extraction from seven datasets: The National Elevation Dataset digital elevation models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset (USGS); The Soil Survey Geographic (SSURGO) database from the National Cooperative Soil Survey (NCSS), which is led by the Natural Resources Conservation Service (NRCS) under the USDA; the Global Historical Climatology Network (GHCN), coordinated by National Climatic Data Center at NOAA; the Daymet gridded estimates of daily weather parameters for North America, version 3, available from the Oak Ridge National Laboratory's Distributed Active Archive Center (DAAC); the International Tree Ring Data Bank; and the National Land Cover Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre, cph], Dylan Beaudette [ctb], Scott Chamberlain [ctb, rev], Jeffrey Hollister [ctb], Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>

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Package xmpdf updated to version 0.1.3 with previous version 0.1.1 dated 2023-02-22

Title: Edit 'XMP' Metadata and 'PDF' Bookmarks and Documentation Info
Description: Edit 'XMP' metadata <https://en.wikipedia.org/wiki/Extensible_Metadata_Platform> in a variety of media file formats as well as edit bookmarks (aka outline aka table of contents) and documentation info entries in 'pdf' files. Can detect and use a variety of command-line tools to perform these operations such as 'exiftool' <https://exiftool.org/>, 'ghostscript' <https://www.ghostscript.com/>, and/or 'pdftk' <https://gitlab.com/pdftk-java/pdftk>.
Author: Trevor L Davis [aut, cre] , W. Trevor King Some pdf code adapted from 'pdf-merge.py' [ctb], Linux Foundation [dtc]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>

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Package lingtypology updated to version 1.1.12 with previous version 1.1.11 dated 2022-12-20

Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] , Kirill Koncha [ctb] , Mikhail Leonov [ctb], Anna Smirnova [ctb], Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>

Diff between lingtypology versions 1.1.11 dated 2022-12-20 and 1.1.12 dated 2023-02-25

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Package kernelshap updated to version 0.3.4 with previous version 0.3.3 dated 2023-01-11

Title: Kernel SHAP
Description: Efficient implementation of Kernel SHAP, see Lundberg and Lee (2017) <https://dl.acm.org/doi/10.5555/3295222.3295230>, and Covert and Lee (2021) <http://proceedings.mlr.press/v130/covert21a>. For models with up to eight features, the results are exact regarding the selected background data. Otherwise, an almost exact hybrid algorithm involving iterative sampling is used. The package plays well together with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'. Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre], David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>

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Package ICD10gm updated to version 1.2.5 with previous version 1.2.4 dated 2021-12-05

Title: Metadata Processing for the German Modification of the ICD-10 Coding System
Description: Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Author: Ewan Donnachie [aut, cre]
Maintainer: Ewan Donnachie <ewan@donnachie.net>

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Package fwildclusterboot updated to version 0.13.0 with previous version 0.12.1 dated 2023-01-23

Title: Fast Wild Cluster Bootstrap Inference for Linear Models
Description: Implementation of fast algorithms for wild cluster bootstrap inference developed in 'Roodman et al' (2019, 'STATA' Journal, <doi:10.1177/1536867X19830877>) and 'MacKinnon et al' (2022), which makes it feasible to quickly calculate bootstrap test statistics based on a large number of bootstrap draws even for large samples. Multiple bootstrap types as described in 'MacKinnon, Nielsen & Webb' (2022) are supported. Further, 'multiway' clustering, regression weights, bootstrap weights, fixed effects and 'subcluster' bootstrapping are supported. Further, both restricted ('WCR') and unrestricted ('WCU') bootstrap are supported. Methods are provided for a variety of fitted models, including 'lm()', 'feols()' (from package 'fixest') and 'felm()' (from package 'lfe'). Additionally implements a 'heteroskedasticity-robust' ('HC1') wild bootstrap. Last, the package provides an R binding to 'WildBootTests.jl', which provides additional speed gains and functionality, including the 'WRE' boo [...truncated...]
Author: Alexander Fischer [aut, cre], David Roodman [aut], Achim Zeileis [ctb] , Nathaniel Graham [ctb] , Susanne Koell [ctb] , Laurent Berge [ctb] , Sebastian Krantz [ctb]
Maintainer: Alexander Fischer <alexander-fischer1801@t-online.de>

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Package lcsm updated to version 0.3.2 with previous version 0.3.1 dated 2023-02-01

Title: Univariate and Bivariate Latent Change Score Modelling
Description: Helper functions to implement univariate and bivariate latent change score models in R using the 'lavaan' package. For details about Latent Change Score Modeling (LCSM) see McArdle (2009) <doi:10.1146/annurev.psych.60.110707.163612> and Grimm, An, McArdle, Zonderman and Resnick (2012) <doi:10.1080/10705511.2012.659627>. The package automatically generates 'lavaan' syntax for different model specifications and varying timepoints. The 'lavaan' syntax generated by this package can be returned and further specifications can be added manually. Longitudinal plots as well as simplified path diagrams can be created to visualise data and model specifications. Estimated model parameters and fit statistics can be extracted as data frames. Data for different univariate and bivariate LCSM can be simulated by specifying estimates for model parameters to explore their effects. This package combines the strengths of other R packages like 'lavaan', 'broom', and 'semPlot' by generating 'lava [...truncated...]
Author: Milan Wiedemann [aut, cre] , Graham M Thew [ctb] , Urska Kosir [ctb] , Anke Ehlers [ths] , Mental Health Research UK [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>

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Package xpose updated to version 0.4.15 with previous version 0.4.14 dated 2022-11-07

Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population) models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>. 'xpose' facilitates data import, creation of numerical run summary and provide 'ggplot2'-based graphics for data exploration and model diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph], Andrew C. Hooker [aut, cph], Sebastian Ueckert [aut, cph], Mike K. Smith [ctb], Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>

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Package tidyseurat updated to version 0.5.9 with previous version 0.5.3 dated 2022-05-20

Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre], Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>

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Package nasapower updated to version 4.0.10 with previous version 4.0.9 dated 2023-01-05

Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy Resource) data are freely available for download with varying spatial resolutions dependent on the original data and with several temporal resolutions depending on the POWER parameter and community. This work is funded through the 'NASA' Earth Science Directorate Applied Science Program. For more on the data themselves, the methodologies used in creating, a web- based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] , Scott Chamberlain [rev] , Hazel Kavili [rev] , Alison Boyer [rev] , Fernando Miguez [ctb] , Maelle Salmon [ctb] , Phillip D. Alderman [ctb] ` must use `I` for literal data as of vroom 1.5.0.', see <https://github.com/ropen [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>

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Package GSODR updated to version 3.1.8 with previous version 3.1.7 dated 2023-01-05

Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion and formatting of Global Surface Summary of the Day ('GSOD') weather data from the from the USA National Centers for Environmental Information ('NCEI'). Units are converted from from United States Customary System ('USCS') units to International System of Units ('SI'). Stations may be individually checked for number of missing days defined by the user, where stations with too many missing observations are omitted. Only stations with valid reported latitude and longitude values are permitted in the final data. Additional useful elements, saturation vapour pressure ('es'), actual vapour pressure ('ea') and relative humidity ('RH') are calculated from the original data using the improved August-Roche-Magnus approximation (Alduchov & Eskridge 1996) and included in the final data set. The resulting metadata include station identification information, country, state, latitude, longitude, elevation, weather observatio [...truncated...]
Author: Adam H. Sparks [aut, cre] , Tomislav Hengl [aut] , Andrew Nelson [aut] , Hugh Parsonage [cph, ctb] , Taras Kaduk [ctb] , Gwenael Giboire [ctb] , Lukasz Pawlik [ctb] , Ross Darnell [ctb] , Tyler Widdison [ctb] ` did not return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>

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Package BayesVarSel (with last version 2.2.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-11-24 2.2.3
2020-02-18 2.0.1
2017-12-04 1.8.0
2017-09-19 1.7.1
2016-11-18 1.7.0
2016-03-02 1.6.2
2015-01-26 1.6.1
2014-03-25 1.5.1
2014-03-20 1.5
2014-01-23 1.4
2013-07-31 1.3
2013-05-07 1.1
2012-12-12 1.0

Permanent link
Package TapeR updated to version 0.5.2 with previous version 0.5.1 dated 2023-02-10

Title: Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Description: Implementation of functions for fitting taper curves (a semiparametric linear mixed effects taper model) to diameter measurements along stems. Further functions are provided to estimate the uncertainty around the predicted curves, to calculate timber volume (also by sections) and marginal (e.g., upper) diameters. For cases where tree heights are not measured, methods for estimating additional variance in volume predictions resulting from uncertainties in tree height models (tariffs) are provided. The example data include the taper curve parameters for Norway spruce used in the 3rd German NFI fitted to 380 trees and a subset of section-wise diameter measurements of these trees. The functions implemented here are detailed in Kublin, E., Breidenbach, J., Kaendler, G. (2013) <doi:10.1007/s10342-013-0715-0>.
Author: Edgar Kublin [aut], Johannes Breidenbach [ctb], Christian Vonderach [ctb, cre]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>

Diff between TapeR versions 0.5.1 dated 2023-02-10 and 0.5.2 dated 2023-02-25

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Package remoter (with last version 0.4-0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-01-05 0.4-0
2016-04-29 0.3-2
2016-02-04 0.2-0

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Package VedicDateTime (with last version 0.1.1) was removed from CRAN

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2022-09-15 0.1.1

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Package icensBKL (with last version 1.4) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-19 1.4
2022-04-18 1.3
2020-02-13 1.2

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Package MasterBayes (with last version 2.58) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-06-22 2.58

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Package VARMER (with last version 1.0.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-02-07 1.0.0
2021-02-05 0.1.1
2021-01-07 0.1.0

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Package smoothSurv (with last version 2.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-10-10 2.5
2022-04-18 2.4
2020-06-01 2.3
2020-05-18 2.2
2020-02-10 2.1

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Package bayesSurv (with last version 3.6) was removed from CRAN

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2022-12-05 3.6

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Package RFmerge (with last version 0.1-10) was removed from CRAN

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2020-05-22 0.1-10

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Package argon2 (with last version 0.4-0) was removed from CRAN

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2021-10-30 0.4-0
2017-06-12 0.2-0

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New package simaerep with initial version 0.4.2
Package: simaerep
Title: Find Clinical Trial Sites Under-Reporting Adverse Events
Version: 0.4.2
Description: Monitoring of Adverse Event (AE) reporting in clinical trials is important for patient safety. Sites that are under-reporting AEs can be detected using Bootstrap-based simulations that simulate overall AE reporting. Based on the simulation an AE under-reporting probability is assigned to each site in a given trial (Koneswarakantha 2021 <doi:10.1007/s40264-020-01011-5>).
URL: https://openpharma.github.io/simaerep/, https://github.com/openpharma/simaerep
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.0), ggplot2
Imports: dplyr (>= 1.0.0), tidyr (>= 1.1.0), magrittr, purrr, rlang, stringr, forcats, cowplot, RColorBrewer, furrr (>= 0.2.1), progressr, knitr, tibble
Suggests: testthat, devtools, pkgdown, spelling, haven, vdiffr, lintr
Language: en-US
NeedsCompilation: no
Packaged: 2023-02-24 16:59:55 UTC; koneswab
Author: Bjoern Koneswarakantha [aut, cre, cph] , F. Hoffmann-La Roche Ltd [cph]
Maintainer: Bjoern Koneswarakantha <bjoern.koneswarakantha@roche.com>
Repository: CRAN
Date/Publication: 2023-02-25 06:50:02 UTC

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New package geoAr with initial version 0.0.1.4.2
Package: geoAr
Title: Argentina's Spatial Data Toolbox
Version: 0.0.1.4.2
Description: Collection of tools that facilitates data access and workflow for spatial analysis of Argentina. Includes historical information from censuses, administrative limits at different levels of aggregation, location of human settlements, among others. Since it is expected that the majority of users will be Spanish-speaking, the documentation of the package prioritizes this language, although an effort is made to also offer annotations in English.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: testthat, gt, knitr, rmarkdown, geofacet, ggplot2
Depends: R (>= 2.10)
Imports: dplyr, sf, httr, assertthat, attempt, tidyr, stringr, magrittr, curl, glue, leaflet
URL: https://github.com/PoliticaArgentina/geoAr
BugReports: https://github.com/PoliticaArgentina/geoAr/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-02-24 22:13:21 UTC; jruiznicolini
Author: Juan Pablo Ruiz Nicolini [aut, cre, cph]
Maintainer: Juan Pablo Ruiz Nicolini <juanpabloruiznicolini@gmail.com>
Repository: CRAN
Date/Publication: 2023-02-25 07:00:02 UTC

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