Title: Data Sets from Montgomery, Peck and Vining
Description: Most of this package consists of data sets from the
textbook Introduction
to Linear Regression Analysis (3rd ed), by Montgomery, Peck
and Vining.
Some additional data sets and functions are also included.
Author: W.J. Braun and S. MacQueen
Maintainer: W.J. Braun <john.braun@ubc.ca>
Diff between MPV versions 1.61 dated 2023-02-17 and 1.62 dated 2023-02-25
DESCRIPTION | 6 +++--- MD5 | 6 +++--- data/rectangles.rda |binary man/rectangles.Rd | 13 ++++++++++++- 4 files changed, 18 insertions(+), 7 deletions(-)
Title: Semi-Supervised Algorithm for Document Scaling
Description: A word embeddings-based semi-supervised model for document scaling Watanabe (2020) <doi:10.1080/19312458.2020.1832976>.
LSS allows users to analyze large and complex corpora on arbitrary dimensions with seed words exploiting efficiency of word embeddings (SVD, Glove).
It can generate word vectors on a users-provided corpus or incorporate a pre-trained word vectors.
Author: Kohei Watanabe [aut, cre, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between LSX versions 1.3.0 dated 2023-01-21 and 1.3.1 dated 2023-02-25
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++++------ NAMESPACE | 1 + NEWS.md | 8 +++++++- R/bootstrap.R |only R/predict.R | 4 ++-- man/bootstrap_lss.Rd |only tests/data/lss_test.RDS |only tests/testthat/test-bootstrap.R |only tests/testthat/test-textmodel.R | 25 +++++++++++++++++++++++++ tests/testthat/test-utils.R | 13 ++++++++----- 11 files changed, 56 insertions(+), 17 deletions(-)
Title: Semi-Supervised Gaussian Mixture Model with a Missing-Data
Mechanism
Description: The algorithm of semi-supervised learning is based on finite Gaussian mixture models and includes a mechanism for handling missing data. It aims to fit a g-class Gaussian mixture model using maximum likelihood. The algorithm treats the labels of unclassified features as missing data, building on the framework introduced by Rubin (1976) <doi:10.2307/2335739> for missing data analysis. By taking into account the dependencies in the missing pattern, the algorithm provides more information for determining the optimal classifier, as specified by Bayes' rule.
Author: Ziyang Lyu [aut, cre],
Daniel Ahfock [aut],
Ryan Thompson [aut],
Geoffrey J. McLachlan [aut]
Maintainer: Ziyang Lyu <ziyang.lyu@unsw.edu.au>
Diff between gmmsslm versions 1.1.1 dated 2023-02-16 and 1.1.2 dated 2023-02-25
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- R/erate.R | 7 ++++--- R/gmmsslm.R | 2 +- man/erate.Rd | 3 ++- man/gmmsslm.Rd | 4 ++-- 6 files changed, 17 insertions(+), 15 deletions(-)
Title: Diet Estimated Trophic Levels
Description: Estimates fractional trophic level from quantitative and qualitative diet data and calculates electivity indices in R. Borstein (2020) <doi:10.1007/s10750-020-04417-5>.
Author: Samuel R. Borstein <sam@borstein.com>
Maintainer: Samuel R. Borstein <sam@borstein.com>
Diff between dietr versions 1.1.3 dated 2021-12-14 and 1.1.4 dated 2023-02-25
DESCRIPTION | 14 MD5 | 92 - NAMESPACE | 22 NEWS.md | 13 R/CompositeIndices.R | 288 ++-- R/ConvertFishbaseDiet.R | 98 - R/ConvertFishbaseFood.R | 84 - R/DataDoc.R | 206 +-- R/DietTroph.R | 258 +-- R/Electivity.R | 258 +-- R/FoodTroph.R | 220 +-- R/FullnessIndex.R | 76 - R/PlotElectivity.R | 102 - R/VacuityIndex.R | 56 R/pkgname.R | 70 - build/vignette.rds |binary inst/CITATION | 28 inst/doc/dietr-vignette.R | 308 ++-- inst/doc/dietr-vignette.Rmd | 670 +++++----- inst/doc/dietr-vignette.pdf |binary man/Casaux1998.Rd | 66 man/CompositeIndices.Rd | 164 +- man/ConvertFishbaseDiet.Rd | 72 - man/ConvertFishbaseFood.Rd | 66 man/CortesPreyVals.Rd | 62 man/DietTroph.Rd | 208 +-- man/Electivity.Rd | 170 +- man/FishBasePreyVals.Rd | 66 man/FoodTroph.Rd | 120 - man/GastrosomaticIndex.Rd | 82 - man/Herichthys.Rd | 46 man/Horn1982.Rd | 60 man/PlotElectivity.Rd | 134 +- man/SebastesStomachs.Rd | 64 man/VacuityIndex.Rd | 82 - man/dietr.Rd | 76 - tests/testthat.R | 2 tests/testthat/test_ConvertFishbaseDiet.R | 24 tests/testthat/test_ConvertFishbaseFood.R | 28 tests/testthat/test_DietTroph.R | 92 - tests/testthat/test_FoodTroph.R | 24 vignettes/dietr-vignette.Rmd | 670 +++++----- vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-18-1.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-19-1.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-19-2.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-19-3.pdf |binary vignettes/dietr-vignette_files/figure-latex/unnamed-chunk-19-4.pdf |binary 47 files changed, 2623 insertions(+), 2618 deletions(-)
Title: Send Messages, Images, R Objects and Files to 'Slack'
Channels/Users
Description: 'Slack' <https://slack.com/> provides a service for teams to
collaborate by sharing messages, images, links, files and more.
Functions are provided that make it possible to interact with the
'Slack' platform 'API'. When you need to share information or data
from R, rather than resort to copy/ paste in e-mails or other services
like 'Skype' <https://www.skype.com/en/>, you can use this package to
send well-formatted output from multiple R objects and expressions to
all teammates at the same time with little effort. You can also send
images from the current graphics device, R objects, and upload files.
Author: Bob Rudis [aut, cre], Jay Jacobs [ctb], David Severski [ctb],
Quinn Weber [ctb], Konrad Karczewski [ctb], Shinya Uryu [ctb], Gregory
Jefferis [ctb], Ed Niles [ctb], Rick Saporta [ctb], Jonathan Sidi
[aut, ctb], Matt Kaye [aut, ctb], Xinye Li [ctb], A [...truncated...]
Maintainer: Matt Kaye <mrkaye97@gmail.com>
Diff between slackr versions 3.3.0 dated 2023-02-20 and 3.3.1 dated 2023-02-25
DESCRIPTION | 12 ++++++------ MD5 | 15 ++++++++------- NEWS.md | 5 +++++ R/slackr_history.R | 6 +++--- man/slackr_history.Rd | 4 ++-- tests/testthat/test-dev-tex.R | 16 +++++++++++++++- tests/testthat/test-history.R | 39 ++++++++++++++++++++++++++++++++++++++- tests/testthat/test-internals.R | 29 +++++++++++++++++++++++++++++ tests/testthat/test-onexit.R |only 9 files changed, 106 insertions(+), 20 deletions(-)
Title: The One- And Two-Sided Hodrick-Prescott Filter
Description: Provides two functions that implement the one-sided and
two-sided versions of the Hodrick-Prescott filter. The one-sided
version is a Kalman filter-based implementation, whereas the two-
sided version uses sparse matrices for improved efficiency.
References:
Hodrick, R. J., and Prescott, E. C. (1997) <doi:10.2307/2953682>
Mcelroy, T. (2008) <doi:10.1111/j.1368-423X.2008.00230.x>
Meyer-Gohde, A. (2010) <https://ideas.repec.org/c/dge/qmrbcd/181.html>
For more references, see the vignette.
Author: Alexandru Monahov
Maintainer: Alexandru Monahov <alexandru.monahov@proton.me>
Diff between hpfilter versions 1.0.0 dated 2023-02-24 and 1.0.1 dated 2023-02-25
DESCRIPTION | 6 +-- MD5 | 14 ++++---- NEWS.md | 8 ++++ README.md | 6 +-- inst/doc/hpfilter_guide.R | 9 +---- inst/doc/hpfilter_guide.Rmd | 12 +------ inst/doc/hpfilter_guide.html | 72 ++++++++++++++++++++----------------------- vignettes/hpfilter_guide.Rmd | 12 +------ 8 files changed, 63 insertions(+), 76 deletions(-)
Title: Functions to Automate Downloading Geospatial Data Available from
Several Federated Data Sources
Description: Functions to automate downloading geospatial data available
from several federated data sources (mainly sources maintained by the
US Federal government). Currently, the package enables extraction from
seven datasets: The National Elevation Dataset digital elevation
models (1 and 1/3 arc-second; USGS); The National Hydrography Dataset
(USGS); The Soil Survey Geographic (SSURGO) database from the National
Cooperative Soil Survey (NCSS), which is led by the Natural Resources
Conservation Service (NRCS) under the USDA; the Global Historical
Climatology Network (GHCN), coordinated by National Climatic Data
Center at NOAA; the Daymet gridded estimates of daily weather
parameters for North America, version 3, available from the Oak Ridge
National Laboratory's Distributed Active Archive Center (DAAC); the
International Tree Ring Data Bank; and the National Land Cover
Database (NLCD).
Author: R. Kyle Bocinsky [aut, cre, cph],
Dylan Beaudette [ctb],
Scott Chamberlain [ctb, rev],
Jeffrey Hollister [ctb],
Julia Gustavsen [rev]
Maintainer: R. Kyle Bocinsky <bocinsky@gmail.com>
Diff between FedData versions 3.0.1 dated 2022-11-28 and 3.0.2 dated 2023-02-25
DESCRIPTION | 19 - MD5 | 36 +-- NEWS.md | 5 R/GHCN_FUNCTIONS.R | 139 +++++++----- R/NASS_FUNCTIONS.R | 26 -- R/NHD_FUNCTIONS.R | 1 R/NLCD_FUNCTIONS.R | 230 ++++++++++---------- R/UTILITY_FUNCTIONS.R | 23 +- R/esri.R | 8 README.md | 312 ++++++++++++++++++++++++---- man/figures/README-GHCN-precipitation-1.png |binary man/figures/README-GHCN-temperature-1.png |binary man/figures/README-NASS-CDL-1.png |binary man/figures/README-NASS-CDL-2.png |binary man/figures/README-NHD-1.png |binary man/figures/README-NLCD-1.png |binary man/figures/README-SSURGO-1.png |binary man/get_nlcd.Rd | 10 tests/testthat/test.NLCD.R | 108 ++++----- 19 files changed, 579 insertions(+), 338 deletions(-)
Title: Edit 'XMP' Metadata and 'PDF' Bookmarks and Documentation Info
Description: Edit 'XMP' metadata <https://en.wikipedia.org/wiki/Extensible_Metadata_Platform>
in a variety of media file formats as well as
edit bookmarks (aka outline aka table of contents) and documentation info entries in 'pdf' files.
Can detect and use a variety of command-line tools to perform these operations such as
'exiftool' <https://exiftool.org/>, 'ghostscript' <https://www.ghostscript.com/>,
and/or 'pdftk' <https://gitlab.com/pdftk-java/pdftk>.
Author: Trevor L Davis [aut, cre] ,
W. Trevor King Some pdf code adapted from 'pdf-merge.py' [ctb],
Linux Foundation [dtc]
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between xmpdf versions 0.1.1 dated 2023-02-22 and 0.1.3 dated 2023-02-25
DESCRIPTION | 6 +++--- MD5 | 30 +++++++++++++++--------------- NEWS.md | 16 ++++++++++++++++ R/docinfo.R | 7 ++----- R/edit_docinfo.R | 13 ++++++------- R/supports.R | 5 ----- README.md | 4 +--- inst/doc/xmpdf.Rmd | 3 +-- inst/doc/xmpdf.html | 3 +-- man/edit_docinfo.Rd | 3 +-- tests/testthat/test-bookmarks.R | 3 ++- tests/testthat/test-cat_pages.R | 2 +- tests/testthat/test-docinfo.R | 12 +++++++----- tests/testthat/test-n_pages.R | 11 ++++++----- tests/testthat/test-xmp.R | 1 + vignettes/xmpdf.Rmd | 3 +-- 16 files changed, 64 insertions(+), 58 deletions(-)
Title: Linguistic Typology and Mapping
Description: Provides R with the Glottolog database <https://glottolog.org/> and some more abilities for purposes of linguistic mapping. The Glottolog database contains the catalogue of languages of the world. This package helps researchers to make a linguistic maps, using philosophy of the Cross-Linguistic Linked Data project <https://clld.org/>, which allows for while at the same time facilitating uniform access to the data across publications. A tutorial for this package is available on GitHub pages <https://docs.ropensci.org/lingtypology/> and package vignette. Maps created by this package can be used both for the investigation and linguistic teaching. In addition, package provides an ability to download data from typological databases such as WALS, AUTOTYP and some others and to create your own database website.
Author: George Moroz [aut, cre] ,
Kirill Koncha [ctb] ,
Mikhail Leonov [ctb],
Anna Smirnova [ctb],
Ekaterina Zalivina [ctb]
Maintainer: George Moroz <agricolamz@gmail.com>
Diff between lingtypology versions 1.1.11 dated 2022-12-20 and 1.1.12 dated 2023-02-25
lingtypology-1.1.11/lingtypology/tests/testthat/test-ids-feature.R |only lingtypology-1.1.12/lingtypology/DESCRIPTION | 6 +- lingtypology-1.1.12/lingtypology/MD5 | 23 ++++------ lingtypology-1.1.12/lingtypology/NEWS | 3 + lingtypology-1.1.12/lingtypology/R/wals.feature.R | 2 lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_creating_maps.html | 4 - lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_db_API.html | 4 - lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_dplyr.html | 4 - lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_glottolog_functions.html | 4 - lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_intro.R | 4 - lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_intro.Rmd | 8 ++- lingtypology-1.1.12/lingtypology/inst/doc/lingtypology_intro.html | 10 ++-- lingtypology-1.1.12/lingtypology/vignettes/lingtypology_intro.Rmd | 8 ++- 13 files changed, 43 insertions(+), 37 deletions(-)
Title: Kernel SHAP
Description: Efficient implementation of Kernel SHAP, see Lundberg and Lee
(2017) <https://dl.acm.org/doi/10.5555/3295222.3295230>, and Covert
and Lee (2021) <http://proceedings.mlr.press/v130/covert21a>. For
models with up to eight features, the results are exact regarding the
selected background data. Otherwise, an almost exact hybrid algorithm
involving iterative sampling is used. The package plays well together
with meta-learning packages like 'tidymodels', 'caret' or 'mlr3'.
Visualizations can be done using the R package 'shapviz'.
Author: Michael Mayer [aut, cre],
David Watson [ctb]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between kernelshap versions 0.3.3 dated 2023-01-11 and 0.3.4 dated 2023-02-25
DESCRIPTION | 25 +++----- MD5 | 12 +-- NEWS.md | 8 ++ R/kernelshap.R | 22 ++----- README.md | 157 +++++++-------------------------------------------- man/figures/logo.png |binary man/kernelshap.Rd | 20 ++---- 7 files changed, 62 insertions(+), 182 deletions(-)
Title: Metadata Processing for the German Modification of the ICD-10
Coding System
Description: Provides convenient access to the German modification of the International Classification of Diagnoses, 10th revision (ICD-10-GM). It provides functionality to aid in the identification, specification and historisation of ICD-10 codes. Its intended use is the analysis of routinely collected data in the context of epidemiology, medical research and health services research. The underlying metadata are released by the German Institute for Medical Documentation and Information <https://www.dimdi.de>, and are redistributed in accordance with their license.
Author: Ewan Donnachie [aut, cre]
Maintainer: Ewan Donnachie <ewan@donnachie.net>
Diff between ICD10gm versions 1.2.4 dated 2021-12-05 and 1.2.5 dated 2023-02-25
DESCRIPTION | 10 MD5 | 45 +- NAMESPACE | 3 NEWS.md | 8 R/icd_lookup.R |only R/icd_showchanges.R | 8 build/partial.rdb |binary build/vignette.rds |binary data/icd_meta_blocks.rda |binary data/icd_meta_chapters.rda |binary data/icd_meta_codes.rda |binary data/icd_meta_transition.rda |binary inst/doc/coding_covid-19.Rmd | 22 - inst/doc/coding_covid-19.html | 360 ++++++++++++++++-- inst/doc/icd10gm_intro.R | 6 inst/doc/icd10gm_intro.Rmd | 21 - inst/doc/icd10gm_intro.html | 759 +++++++++++++++++++++++++++------------ man/icd_browse.Rd |only man/icd_lookup.Rd |only man/icd_meta_blocks.Rd | 2 man/icd_meta_chapters.Rd | 2 man/icd_meta_transition.Rd | 2 man/icd_search.Rd |only tests/testthat/test-icd_lookup.R |only vignettes/coding_covid-19.Rmd | 22 - vignettes/icd10gm_intro.Rmd | 21 - 26 files changed, 948 insertions(+), 343 deletions(-)
Title: Fast Wild Cluster Bootstrap Inference for Linear Models
Description: Implementation of fast algorithms for wild cluster bootstrap
inference developed in 'Roodman et al' (2019, 'STATA' Journal,
<doi:10.1177/1536867X19830877>) and 'MacKinnon et al' (2022),
which makes it feasible to quickly calculate bootstrap test
statistics based on a large number of bootstrap draws even for
large samples. Multiple bootstrap types as described in 'MacKinnon,
Nielsen & Webb' (2022) are supported.
Further, 'multiway' clustering, regression weights,
bootstrap weights, fixed effects and 'subcluster' bootstrapping
are supported. Further, both restricted ('WCR') and unrestricted
('WCU') bootstrap are supported. Methods are provided for a variety
of fitted models, including 'lm()', 'feols()'
(from package 'fixest') and 'felm()' (from package 'lfe').
Additionally implements a 'heteroskedasticity-robust' ('HC1') wild
bootstrap.
Last, the package provides an R binding to 'WildBootTests.jl',
which provides additional speed gains and functionality,
including the 'WRE' boo [...truncated...]
Author: Alexander Fischer [aut, cre],
David Roodman [aut],
Achim Zeileis [ctb] ,
Nathaniel Graham [ctb] ,
Susanne Koell [ctb] ,
Laurent Berge [ctb] ,
Sebastian Krantz [ctb]
Maintainer: Alexander Fischer <alexander-fischer1801@t-online.de>
Diff between fwildclusterboot versions 0.12.1 dated 2023-01-23 and 0.13.0 dated 2023-02-25
fwildclusterboot-0.12.1/fwildclusterboot/R/boot_algo1.R |only fwildclusterboot-0.12.1/fwildclusterboot/R/boot_algo2.R |only fwildclusterboot-0.12.1/fwildclusterboot/R/boot_algo3.R |only fwildclusterboot-0.12.1/fwildclusterboot/R/format_message.R |only fwildclusterboot-0.12.1/fwildclusterboot/R/helper-testthat.R |only fwildclusterboot-0.12.1/fwildclusterboot/man/format_message.Rd |only fwildclusterboot-0.13.0/fwildclusterboot/DESCRIPTION | 14 fwildclusterboot-0.13.0/fwildclusterboot/MD5 | 106 +-- fwildclusterboot-0.13.0/fwildclusterboot/NAMESPACE | 7 fwildclusterboot-0.13.0/fwildclusterboot/NEWS.md | 43 + fwildclusterboot-0.13.0/fwildclusterboot/R/arg_checks.R | 95 +- fwildclusterboot-0.13.0/fwildclusterboot/R/boot_aggregate.R | 31 fwildclusterboot-0.13.0/fwildclusterboot/R/boot_algo_fastnreliable.R |only fwildclusterboot-0.13.0/fwildclusterboot/R/boot_algo_fastnwild.R |only fwildclusterboot-0.13.0/fwildclusterboot/R/boot_algo_julia.R | 25 fwildclusterboot-0.13.0/fwildclusterboot/R/boot_algo_textbook_cpp.R |only fwildclusterboot-0.13.0/fwildclusterboot/R/boottest_felm.R | 232 ++----- fwildclusterboot-0.13.0/fwildclusterboot/R/boottest_fixest.R | 234 ++----- fwildclusterboot-0.13.0/fwildclusterboot/R/boottest_ivreg.R | 47 - fwildclusterboot-0.13.0/fwildclusterboot/R/boottest_lm.R | 228 ++---- fwildclusterboot-0.13.0/fwildclusterboot/R/get_weights.R | 113 ++- fwildclusterboot-0.13.0/fwildclusterboot/R/invert_p_val.R | 9 fwildclusterboot-0.13.0/fwildclusterboot/R/mboottest_felm.R | 34 - fwildclusterboot-0.13.0/fwildclusterboot/R/mboottest_fixest.R | 46 - fwildclusterboot-0.13.0/fwildclusterboot/R/mboottest_lm.R | 37 - fwildclusterboot-0.13.0/fwildclusterboot/R/methods.R | 36 + fwildclusterboot-0.13.0/fwildclusterboot/R/preprocess2.R | 66 +- fwildclusterboot-0.13.0/fwildclusterboot/R/run_bootstrap.R |only fwildclusterboot-0.13.0/fwildclusterboot/R/srr-stats-standards.R | 165 ++++- fwildclusterboot-0.13.0/fwildclusterboot/R/utils.R | 107 +-- fwildclusterboot-0.13.0/fwildclusterboot/README.md | 25 fwildclusterboot-0.13.0/fwildclusterboot/inst/doc/fwildclusterboot.Rmd | 10 fwildclusterboot-0.13.0/fwildclusterboot/inst/doc/fwildclusterboot.html | 41 + fwildclusterboot-0.13.0/fwildclusterboot/man/boot_aggregate.Rd | 11 fwildclusterboot-0.13.0/fwildclusterboot/man/boottest.Rd | 11 fwildclusterboot-0.13.0/fwildclusterboot/man/boottest.felm.Rd | 30 fwildclusterboot-0.13.0/fwildclusterboot/man/boottest.fixest.Rd | 33 - fwildclusterboot-0.13.0/fwildclusterboot/man/boottest.ivreg.Rd | 22 fwildclusterboot-0.13.0/fwildclusterboot/man/boottest.lm.Rd | 32 fwildclusterboot-0.13.0/fwildclusterboot/man/find_proglang.Rd |only fwildclusterboot-0.13.0/fwildclusterboot/man/mboottest.felm.Rd | 9 fwildclusterboot-0.13.0/fwildclusterboot/man/mboottest.fixest.Rd | 9 fwildclusterboot-0.13.0/fwildclusterboot/man/mboottest.lm.Rd | 10 fwildclusterboot-0.13.0/fwildclusterboot/src/Makevars | 2 fwildclusterboot-0.13.0/fwildclusterboot/src/Makevars.win | 2 fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-convergence.R | 7 fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-error_warning.R | 107 --- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-full-enumeration.R | 133 +--- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-global_vars.R | 9 fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-method_equivalence.R | 327 +++++++--- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-new-bootstrap-variants.R | 132 ++-- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-r-lean.R | 42 - fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-r-vs-julia.R | 5 fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-seed.R | 154 ---- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-tstat_equivalence.R | 93 -- fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test-uncategorized.R | 33 - fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test_samplers.R |only fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test_sunab.R | 5 fwildclusterboot-0.13.0/fwildclusterboot/tests/testthat/test_tidy.R | 27 fwildclusterboot-0.13.0/fwildclusterboot/vignettes/fwildclusterboot.Rmd | 10 60 files changed, 1519 insertions(+), 1487 deletions(-)
More information about fwildclusterboot at CRAN
Permanent link
Title: Univariate and Bivariate Latent Change Score Modelling
Description: Helper functions to implement univariate and bivariate latent change score models in R using the 'lavaan' package.
For details about Latent Change Score Modeling (LCSM) see McArdle (2009) <doi:10.1146/annurev.psych.60.110707.163612> and Grimm, An, McArdle, Zonderman and Resnick (2012) <doi:10.1080/10705511.2012.659627>.
The package automatically generates 'lavaan' syntax for different model specifications and varying timepoints.
The 'lavaan' syntax generated by this package can be returned and further specifications can be added manually.
Longitudinal plots as well as simplified path diagrams can be created to visualise data and model specifications.
Estimated model parameters and fit statistics can be extracted as data frames.
Data for different univariate and bivariate LCSM can be simulated by specifying estimates for model parameters to explore their effects.
This package combines the strengths of other R packages like 'lavaan', 'broom', and 'semPlot' by generating 'lava [...truncated...]
Author: Milan Wiedemann [aut, cre] ,
Graham M Thew [ctb] ,
Urska Kosir [ctb] ,
Anke Ehlers [ths] ,
Mental Health Research UK [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between lcsm versions 0.3.1 dated 2023-02-01 and 0.3.2 dated 2023-02-25
DESCRIPTION | 10 MD5 | 36 - R/fit_lcsm.R | 19 R/select_cases.R | 74 +- R/zzz.R | 7 inst/CITATION | 12 inst/doc/lcsm-parameters.html | 11 inst/doc/v0-longitudinal-plots.html | 127 +-- inst/doc/v1-lavaan-syntax.html | 1286 ++++++++++++++++++------------------ inst/doc/v2-path-diagrams.html | 116 +-- inst/doc/v3-extract-tutorial.html | 90 +- inst/doc/v4-simulate-data.html | 458 ++++++------ man/fit_bi_lcsm.Rd | 6 man/fit_uni_lcsm.Rd | 13 man/select_bi_cases.Rd | 13 man/select_uni_cases.Rd | 9 tests/testthat/test-extract_fit.R |only tests/testthat/test-extract_param.R |only tests/testthat/test-rename_vars.R |only tests/testthat/test-select_cases.R |only tests/testthat/test-sim-data.R | 95 +- 21 files changed, 1196 insertions(+), 1186 deletions(-)
Title: Diagnostics for Pharmacometric Models
Description: Diagnostics for non-linear mixed-effects (population)
models from 'NONMEM' <https://www.iconplc.com/innovation/nonmem/>.
'xpose' facilitates data import, creation of numerical run summary
and provide 'ggplot2'-based graphics for data exploration and model
diagnostics.
Author: Benjamin Guiastrennec [aut, cre, cph],
Andrew C. Hooker [aut, cph],
Sebastian Ueckert [aut, cph],
Mike K. Smith [ctb],
Mats O. Karlsson [aut, cph]
Maintainer: Benjamin Guiastrennec <guiastrennec@gmail.com>
Diff between xpose versions 0.4.14 dated 2022-11-07 and 0.4.15 dated 2023-02-25
DESCRIPTION | 12 - MD5 | 90 +++---- NEWS.md | 9 R/plot_minimization.R | 10 R/read_nm_files.R | 6 R/read_nm_tables.R | 3 R/summarise_nm_model.R | 4 R/themes_xp.R | 306 +++++++++++++------------- data/xpdb_ex_pk.rda |binary inst/doc/access_xpdb_data.html | 4 inst/doc/customize_plots.R | 4 inst/doc/customize_plots.Rmd | 4 inst/doc/customize_plots.html | 40 +-- inst/doc/import_model_outputs.html | 2 inst/doc/introduction.html | 4 inst/doc/multiple_pages.html | 2 inst/doc/vpc.Rmd | 2 inst/doc/vpc.html | 4 tests/testthat/data/ctrl_special.RData |binary tests/testthat/data/get_prm_ctrl_no_se.Rdata |binary tests/testthat/data/get_prm_ctrl_ntr.Rdata |binary tests/testthat/data/get_prm_ctrl_tr.Rdata |binary tests/testthat/test-console_outputs.R | 6 tests/testthat/test-edits.R | 2 tests/testthat/test-fetch_data.R | 2 tests/testthat/test-list_nm_tables.R | 2 tests/testthat/test-manual_import.R | 2 tests/testthat/test-model-summary.R | 2 tests/testthat/test-plots.R | 2 tests/testthat/test-print_xpose_plots.R | 2 tests/testthat/test-read_nm_files.R | 2 tests/testthat/test-read_nm_model.R | 2 tests/testthat/test-read_nm_tables.R | 2 tests/testthat/test-set_vars.R | 2 tests/testthat/test-theme-objects.R | 2 tests/testthat/test-update_themes.R | 3 tests/testthat/test-variable_transformation.R | 2 tests/testthat/test-vpc.R | 2 tests/testthat/test-xpdb_access.R | 8 tests/testthat/test-xplot_helpers.R | 4 tests/testthat/test-xpose-default-plots.R | 3 tests/testthat/test-xpose_data.R | 2 tests/testthat/test-xpose_geom.R | 2 tests/testthat/test-xpose_save.R | 11 vignettes/customize_plots.Rmd | 4 vignettes/vpc.Rmd | 2 46 files changed, 285 insertions(+), 294 deletions(-)
Title: Brings Seurat to the Tidyverse
Description: It creates an invisible layer that allow to see the 'Seurat' object
as tibble and interact seamlessly with the tidyverse.
Author: Stefano Mangiola [aut, cre],
Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Diff between tidyseurat versions 0.5.3 dated 2022-05-20 and 0.5.9 dated 2023-02-25
tidyseurat-0.5.3/tidyseurat/man/count.Rd |only tidyseurat-0.5.9/tidyseurat/DESCRIPTION | 12 tidyseurat-0.5.9/tidyseurat/MD5 | 42 tidyseurat-0.5.9/tidyseurat/NAMESPACE | 7 tidyseurat-0.5.9/tidyseurat/R/dplyr_methods.R | 114 - tidyseurat-0.5.9/tidyseurat/R/pillar_utilities.R | 52 tidyseurat-0.5.9/tidyseurat/R/print_method.R | 308 +-- tidyseurat-0.5.9/tidyseurat/R/tibble_methods.R | 35 tidyseurat-0.5.9/tidyseurat/R/tidyr_methods.R | 1100 +++++------ tidyseurat-0.5.9/tidyseurat/R/utilities.R | 790 +++---- tidyseurat-0.5.9/tidyseurat/README.md | 984 ++++----- tidyseurat-0.5.9/tidyseurat/build/tidyseurat.pdf |binary tidyseurat-0.5.9/tidyseurat/build/vignette.rds |binary tidyseurat-0.5.9/tidyseurat/inst/CITATION | 30 tidyseurat-0.5.9/tidyseurat/inst/NEWS.rd | 16 tidyseurat-0.5.9/tidyseurat/inst/doc/figures_article.html | 276 -- tidyseurat-0.5.9/tidyseurat/inst/doc/introduction.html | 629 ++---- tidyseurat-0.5.9/tidyseurat/man/dplyr-methods.Rd | 47 tidyseurat-0.5.9/tidyseurat/man/fragments/intro.Rmd | 790 +++---- tidyseurat-0.5.9/tidyseurat/man/tbl_format_header-methods.Rd | 38 tidyseurat-0.5.9/tidyseurat/man/tibble-methods.Rd | 4 tidyseurat-0.5.9/tidyseurat/man/unnest_seurat.Rd |only tidyseurat-0.5.9/tidyseurat/tests/testthat/test-dplyr.R | 321 +-- 23 files changed, 2744 insertions(+), 2851 deletions(-)
Title: NASA POWER API Client
Description: Client for 'NASA' 'POWER' global meteorology, surface solar
energy and climatology data 'API'. 'POWER' (Prediction Of Worldwide Energy
Resource) data are freely available for download with varying spatial
resolutions dependent on the original data and with several temporal
resolutions depending on the POWER parameter and community. This work is
funded through the 'NASA' Earth Science Directorate Applied Science Program.
For more on the data themselves, the methodologies used in creating, a web-
based data viewer and web access, please see <https://power.larc.nasa.gov/>.
Author: Adam H. Sparks [aut, cre] ,
Scott Chamberlain [rev] ,
Hazel Kavili [rev] ,
Alison Boyer [rev] ,
Fernando Miguez [ctb] ,
Maelle Salmon [ctb] ,
Phillip D. Alderman [ctb] ` must use `I` for literal data as of
vroom 1.5.0.', see
<https://github.com/ropen [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between nasapower versions 4.0.9 dated 2023-01-05 and 4.0.10 dated 2023-02-25
DESCRIPTION | 13 MD5 | 46 NEWS.md | 12 R/get_power.R | 29 README.md | 68 build/vignette.rds |binary inst/CITATION | 44 inst/WORDLIST | 6 inst/doc/nasapower.Rmd | 30 inst/doc/nasapower.html | 3713 ++++++++++++++--------------- man/get_power.Rd | 22 man/nasapower-package.Rd | 2 tests/fixtures/API_failure.yml | 2 tests/fixtures/adjusted_air_pressure.yml | 2 tests/fixtures/adjusted_wind_elevation.yml | 2 tests/fixtures/climatology_ag_point.yml | 2 tests/fixtures/daily_ag_point.yml | 2 tests/fixtures/daily_sb_point_LST.yml | 2 tests/fixtures/daily_sb_point_UTC.yml | 2 tests/fixtures/temporal_api-warning.yml | 2 tests/testthat/test-get_power.R | 460 +-- tests/testthat/test-internal_functions.R | 8 vignettes/nasapower.Rmd | 30 vignettes/nasapower.Rmd.orig | 3 24 files changed, 2239 insertions(+), 2263 deletions(-)
Title: Global Surface Summary of the Day ('GSOD') Weather Data Client
Description: Provides automated downloading, parsing, cleaning, unit conversion
and formatting of Global Surface Summary of the Day ('GSOD') weather data
from the from the USA National Centers for Environmental Information
('NCEI'). Units are converted from from United States Customary System
('USCS') units to International System of Units ('SI'). Stations may be
individually checked for number of missing days defined by the user, where
stations with too many missing observations are omitted. Only stations with
valid reported latitude and longitude values are permitted in the final
data. Additional useful elements, saturation vapour pressure ('es'), actual
vapour pressure ('ea') and relative humidity ('RH') are calculated from the
original data using the improved August-Roche-Magnus approximation (Alduchov
& Eskridge 1996) and included in the final data set. The resulting metadata
include station identification information, country, state, latitude,
longitude, elevation, weather observatio [...truncated...]
Author: Adam H. Sparks [aut, cre] ,
Tomislav Hengl [aut] ,
Andrew Nelson [aut] ,
Hugh Parsonage [cph, ctb] ,
Taras Kaduk [ctb] ,
Gwenael Giboire [ctb] ,
Lukasz Pawlik [ctb] ,
Ross Darnell [ctb] ,
Tyler Widdison [ctb] ` did not
return stations in order of nea [...truncated...]
Maintainer: Adam H. Sparks <adamhsparks@gmail.com>
Diff between GSODR versions 3.1.7 dated 2023-01-05 and 3.1.8 dated 2023-02-25
DESCRIPTION | 6 MD5 | 18 +- NEWS.md | 9 - inst/CITATION | 39 +++--- inst/doc/GSODR.Rmd | 162 ++++++++++++------------ inst/doc/GSODR.html | 260 ++++++++++++++++++++-------------------- inst/extdata/isd_diff.rda |binary inst/extdata/isd_history.rda |binary vignettes/GSODR.Rmd | 162 ++++++++++++------------ vignettes/unnamed-chunk-1-1.png |binary 10 files changed, 331 insertions(+), 325 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-24 2.2.3
2020-02-18 2.0.1
2017-12-04 1.8.0
2017-09-19 1.7.1
2016-11-18 1.7.0
2016-03-02 1.6.2
2015-01-26 1.6.1
2014-03-25 1.5.1
2014-03-20 1.5
2014-01-23 1.4
2013-07-31 1.3
2013-05-07 1.1
2012-12-12 1.0
Title: Flexible Tree Taper Curves Based on Semiparametric Mixed Models
Description: Implementation of functions for fitting taper curves (a semiparametric
linear mixed effects taper model) to diameter measurements along stems. Further
functions are provided to estimate the uncertainty around the predicted curves,
to calculate timber volume (also by sections) and marginal (e.g., upper) diameters.
For cases where tree heights are not measured, methods for estimating
additional variance in volume predictions resulting from uncertainties in
tree height models (tariffs) are provided. The example data include the taper
curve parameters for Norway spruce used in the 3rd German NFI fitted to 380 trees
and a subset of section-wise diameter measurements of these trees. The functions
implemented here are detailed in Kublin, E., Breidenbach, J., Kaendler, G. (2013)
<doi:10.1007/s10342-013-0715-0>.
Author: Edgar Kublin [aut],
Johannes Breidenbach [ctb],
Christian Vonderach [ctb, cre]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>
Diff between TapeR versions 0.5.1 dated 2023-02-10 and 0.5.2 dated 2023-02-25
DESCRIPTION | 10 MD5 | 86 +- NAMESPACE | 4 R/BSplines.R | 46 - R/CdN_DHxHt.f.R | 76 +- R/EYx_ssp.f.R | 100 +-- R/E_DHx_HmDm_HT.f.R | 639 +++++++++++---------- R/E_HDx_HmDm_HT.f.R | 154 ++--- R/E_VOL_AB_HmDm_Ht.f.R | 214 +++---- R/Hx_root.f.R | 56 - R/Int_CdN_DHx_dHt.f.R | 118 +-- R/Int_E_VOL_AB_HmDm_HT_dHt.f.R | 200 +++--- R/ResVar.R | 288 ++++----- R/SK_EBLUP_LME.f.R | 318 +++++----- R/SK_VOLab_EBLUP_LME.f.R | 238 +++---- R/TapeR_FIT_LME.f.R | 294 ++++----- R/TransKnots.R | 30 R/XZ_BSPLINE.f.R | 42 - R/dN.f.R | 30 R/e_vol_ab_hmdm_ht.f_1.R | 500 ++++++++-------- R/qD.rout.f.R | 56 - R/updateKOV.R |only R/xy0_SK_EBLUP_LME.f.R | 64 +- R/xy0_root.f.R | 56 - R/y2x_isp.f.R | 42 - R/y2x_ssp.f.R | 36 - R/yx_isp.f.R | 42 - R/yx_ssp.f.R | 36 - README.md | 2 build/vignette.rds |binary inst/CHANGES | 42 - inst/CITATION | 36 - inst/NEWS.rd | 92 +-- inst/doc/TapeR.R | 378 ++++++------ inst/doc/TapeR.Rnw | 518 ++++++++--------- inst/doc/TapeR.pdf |binary man/DxHx.df.Rd | 86 +- man/E_DHx_HmDm_HT.f.Rd | 330 +++++----- man/HT.par.Rd | 88 +- man/SK.par.lme.Rd | 60 - man/TapeR-package.Rd | 100 +-- man/updateKOV.Rd |only tests/testthat.R | 8 tests/testthat/test_Diameter_equality_if_R0=TRUE.r | 26 vignettes/TapeR.Rnw | 518 ++++++++--------- 45 files changed, 3059 insertions(+), 3000 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-01-05 0.4-0
2016-04-29 0.3-2
2016-02-04 0.2-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-15 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-19 1.4
2022-04-18 1.3
2020-02-13 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-22 2.58
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-07 1.0.0
2021-02-05 0.1.1
2021-01-07 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-10 2.5
2022-04-18 2.4
2020-06-01 2.3
2020-05-18 2.2
2020-02-10 2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-05 3.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-22 0.1-10
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-30 0.4-0
2017-06-12 0.2-0