Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function
(Corless et al, 1996) <doi:10.1007/BF02124750> without the need for
installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between lamW versions 2.1.1 dated 2022-01-18 and 2.1.2 dated 2023-02-28
lamW-2.1.1/lamW/inst/NEWS.Rd |only lamW-2.1.2/lamW/DESCRIPTION | 13 +--- lamW-2.1.2/lamW/MD5 | 22 +++--- lamW-2.1.2/lamW/R/lamW.R | 14 +--- lamW-2.1.2/lamW/README.md | 44 +++++++++++-- lamW-2.1.2/lamW/build/partial.rdb |binary lamW-2.1.2/lamW/inst/CITATION | 23 ++----- lamW-2.1.2/lamW/inst/News.Rd |only lamW-2.1.2/lamW/inst/tinytest/test_lamW.R | 65 +++++++++++--------- lamW-2.1.2/lamW/man/lamW.Rd | 31 +++++---- lamW-2.1.2/lamW/src/Makevars | 1 lamW-2.1.2/lamW/src/Makevars.win | 1 lamW-2.1.2/lamW/src/lambertW.cpp | 95 +++++++++++++----------------- 13 files changed, 162 insertions(+), 147 deletions(-)
Title: Model Based Treatment of Missing Data
Description: Contains model-based treatment of missing data for regression
models with missing values in covariates or the dependent
variable using maximum likelihood or Bayesian estimation
(Ibrahim et al., 2005; <doi:10.1198/016214504000001844>;
Luedtke, Robitzsch, & West, 2020a, 2020b;
<doi:10.1080/00273171.2019.1640104><doi:10.1037/met0000233>).
The regression model can be nonlinear (e.g., interaction
effects, quadratic effects or B-spline functions).
Multilevel models with missing data in predictors are
available for Bayesian estimation. Substantive-model compatible
multiple imputation can be also conducted.
Author: Alexander Robitzsch [aut, cre], Oliver Luedtke [aut]
Maintainer: Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
Diff between mdmb versions 1.7-22 dated 2023-02-17 and 1.8-7 dated 2023-02-28
DESCRIPTION | 8 ++++---- MD5 | 22 +++++++++++----------- R/RcppExports.R | 2 +- R/frm_em.R | 2 +- R/frm_em_calc_likelihood.R | 8 ++++++-- R/frm_em_calc_total_likelihood.R | 25 ++++++++++++++++++++----- R/frm_prepare_data_em.R | 4 +++- R/frm_prepare_data_include_latent_data.R | 10 +++++++++- README.md | 2 +- build/partial.rdb |binary inst/NEWS | 10 ++++++++++ src/RcppExports.cpp | 2 +- 12 files changed, 67 insertions(+), 28 deletions(-)
Title: R Interface to COVID-19 Data Hub
Description: Provides a daily summary of COVID-19 cases, deaths, recovered, tests,
vaccinations, and hospitalizations for 230+ countries, 760+ regions,
and 12000+ administrative divisions of lower level.
Includes policy measures, mobility data, and geospatial identifiers.
Data source: COVID-19 Data Hub <https://covid19datahub.io>.
Author: Emanuele Guidotti [aut, cre] ,
David Ardia [ctb]
Maintainer: Emanuele Guidotti <emanuele.guidotti@unine.ch>
Diff between COVID19 versions 3.0.2 dated 2022-02-22 and 3.0.3 dated 2023-02-28
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/covid19.R | 19 +++++++++++-------- README.md | 6 +++--- build/partial.rdb |binary inst/CITATION | 25 ++++++++++++++++++++----- man/covid19.Rd | 11 +++++------ 7 files changed, 49 insertions(+), 32 deletions(-)
Title: Infrastructure for Data Stream Mining
Description: A framework for data stream modeling and associated data mining tasks such as clustering and classification. The development of this package was supported in part by NSF IIS-0948893, NSF CMMI 1728612, and NIH R21HG005912. Hahsler et al (2017) <doi:10.18637/jss.v076.i14>.
Author: Michael Hahsler [aut, cre, cph]
,
Matthew Bolanos [ctb],
John Forrest [ctb],
Matthias Carnein [ctb],
Dennis Assenmacher [ctb],
Dalibor Krleža [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between stream versions 2.0-0 dated 2022-09-02 and 2.0-1 dated 2023-02-28
stream-2.0-0/stream/man/DST_Runner.Rd |only stream-2.0-0/stream/tests/testthat/test-read_writeDSC.R |only stream-2.0-1/stream/DESCRIPTION | 15 stream-2.0-1/stream/MD5 | 193 +++++------ stream-2.0-1/stream/NAMESPACE | 33 + stream-2.0-1/stream/NEWS.md | 19 + stream-2.0-1/stream/R/AAA_stream-package.R | 2 stream-2.0-1/stream/R/DSAggregate.R | 10 stream-2.0-1/stream/R/DSAggregate_Sample.R | 10 stream-2.0-1/stream/R/DSAggregate_Window.R | 63 ++- stream-2.0-1/stream/R/DSC.R | 10 stream-2.0-1/stream/R/DSC_DBSTREAM.R | 2 stream-2.0-1/stream/R/DSC_R.R | 101 ++--- stream-2.0-1/stream/R/DSC_SlidingWindow.R |only stream-2.0-1/stream/R/DSC_Window.R | 15 stream-2.0-1/stream/R/DSClassifier.R | 6 stream-2.0-1/stream/R/DSClassifier_SlidingWindow.R |only stream-2.0-1/stream/R/DSD.R | 48 ++ stream-2.0-1/stream/R/DSD_BarsAndGaussians.R | 21 + stream-2.0-1/stream/R/DSD_Cubes.R | 19 - stream-2.0-1/stream/R/DSD_Gaussians.R | 29 + stream-2.0-1/stream/R/DSD_MG.R | 20 + stream-2.0-1/stream/R/DSD_Memory.R | 21 - stream-2.0-1/stream/R/DSD_ReadDB.R | 10 stream-2.0-1/stream/R/DSD_ReadStream.R | 67 +++ stream-2.0-1/stream/R/DSD_Target.R | 18 - stream-2.0-1/stream/R/DSD_UniformNoise.R | 19 - stream-2.0-1/stream/R/DSD_mlbenchGenerator.R | 10 stream-2.0-1/stream/R/DSF.R | 81 ++++ stream-2.0-1/stream/R/DSF_Convolve.R | 48 +- stream-2.0-1/stream/R/DSF_Downsample.R | 28 + stream-2.0-1/stream/R/DSF_ExponentialMA.R | 43 +- stream-2.0-1/stream/R/DSF_Func.R | 39 +- stream-2.0-1/stream/R/DSF_Scale.R | 93 +++-- stream-2.0-1/stream/R/DSF_dplyr.R | 28 + stream-2.0-1/stream/R/DSRegressor.R |only stream-2.0-1/stream/R/DSRegressor_SlidingWindow.R |only stream-2.0-1/stream/R/DST.R | 22 - stream-2.0-1/stream/R/DST_Multi.R | 4 stream-2.0-1/stream/R/DST_Runner.R | 31 + stream-2.0-1/stream/R/DST_SlidingWindow.R |only stream-2.0-1/stream/R/DST_WriteStream.R | 45 ++ stream-2.0-1/stream/R/evaluate.DSC.R | 14 stream-2.0-1/stream/R/evaluate.R | 10 stream-2.0-1/stream/R/update.R | 6 stream-2.0-1/stream/R/write_stream.R | 95 +++-- stream-2.0-1/stream/README.md | 260 +++++++++++++-- stream-2.0-1/stream/build/partial.rdb |binary stream-2.0-1/stream/build/vignette.rds |binary stream-2.0-1/stream/inst/CITATION | 3 stream-2.0-1/stream/inst/doc/extending_stream.pdf |binary stream-2.0-1/stream/inst/doc/stream.pdf |binary stream-2.0-1/stream/man/DSAggregate.Rd | 12 stream-2.0-1/stream/man/DSAggregate_Window.Rd | 19 + stream-2.0-1/stream/man/DSC.Rd | 13 stream-2.0-1/stream/man/DSC_DBSCAN.Rd | 3 stream-2.0-1/stream/man/DSC_DBSTREAM.Rd | 2 stream-2.0-1/stream/man/DSC_EA.Rd | 3 stream-2.0-1/stream/man/DSC_Hierarchical.Rd | 3 stream-2.0-1/stream/man/DSC_Kmeans.Rd | 3 stream-2.0-1/stream/man/DSC_Macro.Rd | 4 stream-2.0-1/stream/man/DSC_Micro.Rd | 1 stream-2.0-1/stream/man/DSC_R.Rd | 6 stream-2.0-1/stream/man/DSC_Reachability.Rd | 3 stream-2.0-1/stream/man/DSC_SlidingWindow.Rd |only stream-2.0-1/stream/man/DSC_Static.Rd | 1 stream-2.0-1/stream/man/DSC_TwoStage.Rd | 1 stream-2.0-1/stream/man/DSClassifier.Rd | 12 stream-2.0-1/stream/man/DSClassifier_SlidingWindow.Rd |only stream-2.0-1/stream/man/DSD_ReadDB.Rd | 1 stream-2.0-1/stream/man/DSD_ScaleStream.Rd |only stream-2.0-1/stream/man/DSF.Rd | 77 +++- stream-2.0-1/stream/man/DSF_Convolve.Rd | 3 stream-2.0-1/stream/man/DSF_Downsample.Rd | 3 stream-2.0-1/stream/man/DSF_ExponentialMA.Rd | 3 stream-2.0-1/stream/man/DSF_Func.Rd | 3 stream-2.0-1/stream/man/DSF_Scale.Rd | 34 - stream-2.0-1/stream/man/DSF_dplyr.Rd | 3 stream-2.0-1/stream/man/DSOutlier.Rd | 5 stream-2.0-1/stream/man/DSRegressor.Rd |only stream-2.0-1/stream/man/DSRegressor_SlidingWindow.Rd |only stream-2.0-1/stream/man/DST.Rd | 25 - stream-2.0-1/stream/man/DST_Multi.Rd | 2 stream-2.0-1/stream/man/DST_SlidingWindow.Rd |only stream-2.0-1/stream/man/DST_WriteStream.Rd | 23 + stream-2.0-1/stream/man/animate_cluster.Rd | 1 stream-2.0-1/stream/man/close_stream.Rd | 1 stream-2.0-1/stream/man/evaluate.DSC.Rd | 7 stream-2.0-1/stream/man/evaluate.Rd | 16 stream-2.0-1/stream/man/get_assignment.Rd | 1 stream-2.0-1/stream/man/plot.DSC.Rd | 1 stream-2.0-1/stream/man/predict.Rd | 6 stream-2.0-1/stream/man/prune_clusters.Rd | 1 stream-2.0-1/stream/man/read_saveDSC.Rd | 1 stream-2.0-1/stream/man/recluster.Rd | 1 stream-2.0-1/stream/man/stream-package.Rd | 2 stream-2.0-1/stream/man/stream_pipeline.Rd |only stream-2.0-1/stream/man/update.Rd | 14 stream-2.0-1/stream/man/write_stream.Rd | 19 - stream-2.0-1/stream/src/Makevars | 2 stream-2.0-1/stream/src/evoStream.cpp | 96 ----- stream-2.0-1/stream/tests/testthat/test-DSC.R | 30 + stream-2.0-1/stream/tests/testthat/test-DSC_read_write.R |only stream-2.0-1/stream/tests/testthat/test-DSD.R | 83 ++++ stream-2.0-1/stream/tests/testthat/test-DSF.R |only stream-2.0-1/stream/tests/testthat/test-write_stream.R |only 106 files changed, 1531 insertions(+), 630 deletions(-)
Title: Automatic Interpolation Package
Description: Performs an automatic interpolation by automatically estimating the variogram and then calling gstat.
Author: Paul Hiemstra [aut],
Jon Olav Skoien [aut, cre]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between automap versions 1.0-16 dated 2022-04-05 and 1.1-1 dated 2023-02-28
DESCRIPTION | 18 +- MD5 | 48 ++--- NAMESPACE | 7 R/autoKrige.cv.r | 8 R/autoKrige.r | 192 ++++++++++++---------- R/autofitVariogram.r | 343 +++++++++++++++++++++-------------------- R/autokrige.vgm.panel.r | 92 +++++----- R/automapPlot.r | 42 +++-- R/create_new_data.r | 24 +- R/plot.autoKrige.r | 67 ++++---- R/plot.posPredictionInterval.r | 64 +++---- README | 40 ++-- demo/00Index | 2 demo/automap.r | 106 ++++++------ inst/CITATION | 26 +-- man/autoKrige.rd | 265 ++++++++++++++++--------------- man/autoKrige_cv.rd | 133 ++++++++------- man/autofitVariogram.rd | 240 ++++++++++++++-------------- man/automapPlot.rd | 67 ++++---- man/compare.cv.rd | 182 ++++++++++----------- man/plot.autoKrige.rd | 74 +++++--- man/posPredictionInterval.rd | 63 +++---- tests/autoKrige.cv.R | 52 ++++-- tests/autoKrige.cv.Rout.save |only tests/automap.R | 46 +++++ tests/automap.Rout.save |only 26 files changed, 1178 insertions(+), 1023 deletions(-)
Title: Time Series Clustering Along with Optimizations for the Dynamic
Time Warping Distance
Description: Time series clustering along with optimized techniques related
to the Dynamic Time Warping distance and its corresponding lower bounds.
Implementations of partitional, hierarchical, fuzzy, k-Shape and TADPole
clustering are available. Functionality can be easily extended with
custom distance measures and centroid definitions. Implementations of
DTW barycenter averaging, a distance based on global alignment kernels,
and the soft-DTW distance and centroid routines are also provided.
All included distance functions have custom loops optimized for the
calculation of cross-distance matrices, including parallelization support.
Several cluster validity indices are included.
Author: Alexis Sarda-Espinosa
Maintainer: Alexis Sarda <alexis.sarda@gmail.com>
Diff between dtwclust versions 5.5.11 dated 2022-09-24 and 5.5.12 dated 2023-02-28
DESCRIPTION | 12 +- MD5 | 20 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/COPYRIGHTS | 2 inst/NEWS.Rd | 5 - inst/doc/dtwclust.pdf |binary inst/doc/parallelization-considerations.html | 112 +++++++++++++-------------- inst/doc/timing-experiments.html | 80 +++++++++---------- src/Makevars | 1 src/Makevars.win | 3 11 files changed, 116 insertions(+), 119 deletions(-)
Title: Manage Competition Results
Description: Tools for storing and managing competition results.
Competition is understood as a set of games in which players gain some
abstract scores. There are two ways for storing results: in long (one
row per game-player) and wide (one row per game with fixed amount of
players) formats. This package provides functions for creation and
conversion between them. Also there are functions for computing their
summary and Head-to-Head values for players. They leverage grammar of
data manipulation from 'dplyr'.
Author: Evgeni Chasnovski [aut, cre]
Maintainer: Evgeni Chasnovski <evgeni.chasnovski@gmail.com>
Diff between comperes versions 0.2.6 dated 2023-01-08 and 0.2.7 dated 2023-02-28
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 4 R/utils.R | 31 ++- README.md | 6 inst/doc/formats.html | 200 ++++++++++---------- inst/doc/manipulation.html | 450 ++++++++++++++++++++++----------------------- 7 files changed, 364 insertions(+), 345 deletions(-)
Title: Group Iterative Multiple Model Estimation
Description: Data-driven approach for arriving at person-specific time series models. The method first identifies which relations replicate across the majority of individuals to detect signal from noise. These group-level relations are then used as a foundation for starting the search for person-specific (or individual-level) relations. See Gates & Molenaar (2012) <doi:10.1016/j.neuroimage.2012.06.026>.
Author: Stephanie Lane [aut, trl],
Kathleen Gates [aut, cre, ccp],
Zachary Fisher [aut],
Cara Arizmendi [aut],
Peter Molenaar [aut, ccp],
Edgar Merkle [ctb],
Michael Hallquist [ctb],
Hallie Pike [ctb],
Teague Henry [ctb],
Kelly Duffy [ctb],
Lan Luo [ctb],
Ad [...truncated...]
Maintainer: Kathleen M Gates <gateskm@email.unc.edu>
Diff between gimme versions 0.7-10 dated 2022-12-15 and 0.7-11 dated 2023-02-28
DESCRIPTION | 13 + MD5 | 34 ++-- R/final.org.R | 298 +++++-------------------------------------- R/fit.model.R | 34 ++-- R/get.params.R | 66 ++++----- R/gimme.R | 9 - R/return.mis.R | 10 - R/return.zs.R | 5 R/search.paths.ms.R | 4 R/simulateData.R | 10 - R/summaryPathsCounts.R |only build/vignette.rds |binary data/HRFsim.rda |binary data/ms.fit.rda |binary data/simData.rda |binary data/simDataLV.rda |binary data/ts.rda |binary inst/doc/gimme_vignette.html | 128 +++++++++--------- man/summaryPathsCounts.Rd |only 19 files changed, 197 insertions(+), 414 deletions(-)
More information about LorenzRegression at CRAN
Permanent link
Title: Import and Export 'SPSS', 'Stata' and 'SAS' Files
Description: Import foreign statistical formats into R via the embedded
'ReadStat' C library, <https://github.com/WizardMac/ReadStat>.
Author: Hadley Wickham [aut, cre],
Evan Miller [aut, cph] ,
Danny Smith [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between haven versions 2.5.1 dated 2022-08-22 and 2.5.2 dated 2023-02-28
DESCRIPTION | 17 +- MD5 | 109 +++++++++--------- NAMESPACE | 1 NEWS.md | 37 ++++++ R/as_factor.R | 10 - R/haven-sas.R | 57 +++++++-- R/haven-spss.R | 26 +++- R/haven-stata.R | 28 +++- R/labelled-pillar.R | 8 - R/labelled_spss.R | 5 README.md | 43 +++---- build/vignette.rds |binary inst/doc/datetimes.Rmd | 19 +-- inst/doc/datetimes.html | 30 ++--- inst/doc/semantics.html | 178 +++++++++++++++--------------- man/as_factor.Rd | 10 - man/haven-package.Rd | 2 man/read_dta.Rd | 17 ++ man/read_sas.Rd | 12 -- man/read_spss.Rd | 16 ++ man/read_xpt.Rd | 23 +++ man/write_sas.Rd |only src/DfWriter.cpp | 10 + src/readstat/NEWS | 14 ++ src/readstat/readstat_bits.c | 2 src/readstat/readstat_bits.h | 2 src/readstat/readstat_convert.c | 2 src/readstat/readstat_malloc.c | 10 + src/readstat/readstat_parser.c | 2 src/readstat/readstat_variable.c | 4 src/readstat/readstat_writer.c | 2 src/readstat/sas/ieee.c | 4 src/readstat/sas/readstat_sas.c | 2 src/readstat/sas/readstat_sas7bcat_read.c | 33 +++-- src/readstat/sas/readstat_sas7bdat_read.c | 3 src/readstat/sas/readstat_sas_rle.c | 7 + src/readstat/sas/readstat_xport_read.c | 2 src/readstat/spss/readstat_por.c | 4 src/readstat/spss/readstat_por.h | 2 src/readstat/spss/readstat_por_write.c | 2 src/readstat/spss/readstat_sav_parse.c | 173 ++++++++++++++++------------- src/readstat/spss/readstat_sav_parse.rl | 3 src/readstat/spss/readstat_sav_read.c | 10 - src/readstat/stata/readstat_dta_write.c | 4 tests/testthat/_snaps/haven-sas.md | 8 + tests/testthat/_snaps/haven-spss.md | 7 - tests/testthat/_snaps/labelled-pillar.md | 32 +++++ tests/testthat/_snaps/labelled.md | 2 tests/testthat/_snaps/labelled_spss.md | 2 tests/testthat/test-haven-sas.R | 106 +++++------------ tests/testthat/test-haven-spss.R | 35 +++++ tests/testthat/test-haven-stata.R | 25 ++++ tests/testthat/test-labelled-pillar.R | 31 +++++ tests/testthat/test-labelled.R | 4 tests/testthat/test-labelled_spss.R | 4 vignettes/datetimes.Rmd | 19 +-- 56 files changed, 752 insertions(+), 468 deletions(-)
Title: Conditional Maximum Likelihood for Quadratic Exponential Models
for Binary Panel Data
Description: Estimation, based on conditional maximum likelihood, of the quadratic exponential
model proposed by Bartolucci, F. & Nigro, V. (2010, Econometrica) <DOI:10.3982/ECTA7531>
and of a simplified and a modified version of this model. The quadratic exponential model
is suitable for the analysis of binary longitudinal data when state dependence (further
to the effect of the covariates and a time-fixed individual intercept) has to be taken
into account. Therefore, this is an alternative to the dynamic logit model having the
advantage of easily allowing conditional inference in order to eliminate the individual
intercepts and then getting consistent estimates of the parameters of main interest
(for the covariates and the lagged response). The simplified version of this model
does not distinguish, as the original model does, between the last time occasion
and the previous occasions. The modified version formulates in a different way the
interaction terms and it may be used to test in a [...truncated...]
Author: Francesco Bartolucci ,
Claudia Pigini ,
Francesco Valentini
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between cquad versions 2.2 dated 2020-10-10 and 2.3 dated 2023-02-28
DESCRIPTION | 39 +++++++++++++++++++++++++++++++-------- MD5 | 32 ++++++++++++++++---------------- NAMESPACE | 3 ++- R/cquad.R | 29 ++++++++++++++--------------- R/cquad_basic.R | 14 +++++++------- R/quasi_sym_pseudo.R | 23 +++++++++++------------ R/sim_panel_logit.R | 6 +++--- man/cquad-package.Rd | 2 ++ man/cquad.Rd | 4 ++-- man/cquad_basic.Rd | 6 +++--- man/cquad_equ.Rd | 6 +++--- man/cquad_ext.Rd | 6 +++--- man/cquad_pseudo.Rd | 6 +++--- man/quasi_sym.Rd | 4 +++- man/quasi_sym_equ.Rd | 4 +++- man/quasi_sym_pseudo.Rd | 3 ++- man/sq.Rd | 2 +- 17 files changed, 109 insertions(+), 80 deletions(-)
Title: Data Source Agnostic Filtering Tools
Description: Common API for filtering data stored in different data models.
Provides multiple filter types and reproducible R code.
Works standalone or with 'shinyCohortBuilder' as the GUI for interactive Shiny apps.
Author: Krystian Igras [cre, aut],
Adam Forys [ctb]
Maintainer: Krystian Igras <krystian8207@gmail.com>
Diff between cohortBuilder versions 0.1 dated 2022-06-01 and 0.2.0 dated 2023-02-28
DESCRIPTION | 12 MD5 | 66 - NAMESPACE | 4 NEWS.md | 11 R/cohortBuilder-package.R | 10 R/cohort_methods.R | 245 ++++-- R/list_operators.R | 5 R/repro_code_utils.R | 186 +++++ R/source_methods.R | 25 R/source_tblist.R | 8 R/step.R | 7 README.md | 88 +- build/vignette.rds |binary data/librarian.rda |binary inst/doc/binding-keys.html | 465 +++++++++---- inst/doc/cohort-configuration.html | 366 ++++++++-- inst/doc/cohortBuilder.R | 3 inst/doc/cohortBuilder.Rmd | 14 inst/doc/cohortBuilder.html | 1104 ++++++++++++++++++++----------- inst/doc/custom-extensions.R | 12 inst/doc/custom-extensions.Rmd | 38 - inst/doc/custom-extensions.html | 542 +++++++++++---- inst/doc/custom-filters.html | 475 ++++++++++--- inst/doc/managing-cohort.R | 15 inst/doc/managing-cohort.Rmd | 19 inst/doc/managing-cohort.html | 717 ++++++++++++-------- man/Cohort.Rd | 35 man/add_step.Rd | 3 man/code.Rd | 27 man/figures/README-unnamed-chunk-8-1.png |binary man/source-layer.Rd | 17 vignettes/cohortBuilder.Rmd | 14 vignettes/custom-extensions.Rmd | 38 - vignettes/managing-cohort.Rmd | 19 34 files changed, 3290 insertions(+), 1300 deletions(-)
Title: Analysing Convergent Evolution using the Wheatsheaf Index
Description: Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other unrelated but perhaps useful functions.
Author: Kevin Arbuckle and Amanda Minter
Maintainer: Kevin Arbuckle <kevin.arbuckle@swansea.ac.uk>
Diff between windex versions 2.0.3 dated 2021-10-21 and 2.0.4 dated 2023-02-28
DESCRIPTION | 14 +++++++------- MD5 | 34 ++++++++++++++++++++-------------- NAMESPACE | 10 +++++++--- R/modSel.fitMk.R |only R/modSel.phylolm.R |only R/nodeDist.R |only R/pir.R | 10 +++++----- R/prune2data.R | 2 +- R/richYuleInputs.R | 20 ++++++++++++++++++-- R/treecheck.R | 4 ++-- R/treedatacheck.R | 22 ++++++++++++++++------ R/windex.R | 8 +++++--- inst/CITATION | 11 +++++------ man/modSel.fitMk.Rd |only man/modSel.phylolm.Rd |only man/modSelTab.Rd | 2 +- man/nodeDist.Rd |only man/pir.Rd | 2 +- man/richYuleInputs.Rd | 5 ++++- man/treedatacheck.Rd | 2 +- man/windex.sim.test.Rd | 2 +- 21 files changed, 94 insertions(+), 54 deletions(-)
Title: Smooth Survival Models, Including Generalized Survival Models
Description: R implementation of generalized survival models (GSMs), smooth accelerated failure time (AFT) models and Markov multi-state models. For the GSMs, g(S(t|x))=eta(t,x) for a link function g, survival S at time t with covariates x and a linear predictor eta(t,x). The main assumption is that the time effect(s) are smooth <doi:10.1177/0962280216664760>. For fully parametric models with natural splines, this re-implements Stata's 'stpm2' function, which are flexible parametric survival models developed by Royston and colleagues. We have extended the parametric models to include any smooth parametric smoothers for time. We have also extended the model to include any smooth penalized smoothers from the 'mgcv' package, using penalized likelihood. These models include left truncation, right censoring, interval censoring, gamma frailties and normal random effects <doi:10.1002/sim.7451>, and copulas. For the smooth AFTs, S(t|x) = S_0(t*eta(t,x)), where the baseline survival function S_0 [...truncated...]
Author: Mark Clements [aut, cre],
Xing-Rong Liu [aut],
Benjamin Christoffersen [aut],
Paul Lambert [ctb],
Lasse Hjort Jakobsen [ctb],
Alessandro Gasparini [ctb],
Gordon Smyth [cph],
Patrick Alken [cph],
Simon Wood [cph],
Rhys Ulerich [cph]
Maintainer: Mark Clements <mark.clements@ki.se>
Diff between rstpm2 versions 1.5.9 dated 2023-01-06 and 1.6.1 dated 2023-02-28
DESCRIPTION | 8 ++++---- MD5 | 40 +++++++++++++++++++++++++--------------- NAMESPACE | 7 ++++--- NEWS.md | 3 +++ R/aft.R | 14 ++++++++++---- R/aft_integrated.R |only R/aft_mixture.R |only R/pm2-3.R | 2 +- inst/CITATION | 32 ++++++++++++++++---------------- inst/doc/Introduction.pdf |binary inst/doc/SimpleGuide.pdf |binary inst/doc/equations.html |only inst/doc/equations.org |only inst/doc/multistate.pdf |binary inst/doc/predictnl.pdf |binary man/aft.Rd | 2 +- man/aft_integrated-class.Rd |only man/aft_integrated.Rd |only man/aft_mixture-class.Rd |only man/aft_mixture.Rd |only src/aft.cpp | 31 +++++++++++++++++++------------ src/aft_integrated.cpp |only src/aft_mixture.cpp |only src/package_init.c | 4 ++++ src/test-nmmin.cpp | 29 +++++++++++++++-------------- tests/testthat/test_base.R | 9 +++++---- 26 files changed, 107 insertions(+), 74 deletions(-)
Title: Stubbing and Setting Expectations on 'HTTP' Requests
Description: Stubbing and setting expectations on 'HTTP' requests.
Includes tools for stubbing 'HTTP' requests, including expected
request conditions and response conditions. Match on
'HTTP' method, query parameters, request body, headers and
more. Can be used for unit tests or outside of a testing
context.
Author: Scott Chamberlain [aut, cre] ,
Aaron Wolen [ctb] ,
rOpenSci [fnd]
Maintainer: Scott Chamberlain <myrmecocystus+r@gmail.com>
Diff between webmockr versions 0.8.2 dated 2022-08-28 and 0.9.0 dated 2023-02-28
DESCRIPTION | 8 ++--- MD5 | 33 +++++++++++----------- NAMESPACE | 1 NEWS.md | 17 +++++++++++ R/RequestPattern.R | 13 ++------ R/StubRegistry.R | 16 ++++++++--- R/StubbedRequest.R | 55 ++++++++++++++++++++++++++++++++++++-- R/adapter.R | 17 ++++------- R/to_return.R | 2 - R/webmockr-opts.R | 24 ++-------------- man/BodyPattern.Rd | 2 - man/StubCounter.Rd |only man/StubRegistry.Rd | 4 ++ man/StubbedRequest.Rd | 16 +++++++++++ man/webmockr_configure.Rd | 18 ++---------- tests/testthat/test-HttrAdapter.R | 32 +++++++++++++++++++--- tests/testthat/test-to_return.R | 18 ++++++++++++ tests/testthat/test-zutils.R | 21 +++++++++++++- 18 files changed, 208 insertions(+), 89 deletions(-)
Title: Interactive Analysis of UCSC Xena Data
Description: Provides functions and a Shiny application for downloading,
analyzing and visualizing datasets from UCSC Xena
(<http://xena.ucsc.edu/>), which is a collection of UCSC-hosted public
databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others.
Author: Shixiang Wang [aut, cre] ,
Yi Xiong [aut] ,
Longfei Zhao [aut] ,
Kai Gu [aut] ,
Yin Li [aut],
Fei Zhao [aut]
Maintainer: Shixiang Wang <w_shixiang@163.com>
Diff between UCSCXenaShiny versions 1.1.9 dated 2022-12-12 and 1.1.10 dated 2023-02-28
DESCRIPTION | 6 - MD5 | 14 ++-- NEWS.md | 4 + R/get_pancan_value.R | 5 - R/vis_pancan_value.R | 52 +++++++++++++++ README.md | 1 build/vignette.rds |binary inst/doc/api.html | 175 +++++++++++++++++++++------------------------------ 8 files changed, 144 insertions(+), 113 deletions(-)
Title: A Toolkit for Recursive Partytioning
Description: A toolkit with infrastructure for representing, summarizing, and
visualizing tree-structured regression and classification models. This
unified infrastructure can be used for reading/coercing tree models from
different sources ('rpart', 'RWeka', 'PMML') yielding objects that share
functionality for print()/plot()/predict() methods. Furthermore, new and improved
reimplementations of conditional inference trees (ctree()) and model-based
recursive partitioning (mob()) from the 'party' package are provided based
on the new infrastructure. A description of this package was published
by Hothorn and Zeileis (2015) <https://jmlr.org/papers/v16/hothorn15a.html>.
Author: Torsten Hothorn [aut, cre] ,
Heidi Seibold [ctb] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between partykit versions 1.2-16 dated 2022-06-20 and 1.2-17 dated 2023-02-28
DESCRIPTION | 8 +++--- MD5 | 20 ++++++++-------- R/plot.R | 8 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 59 +++++++++++++++++++++++------------------------- inst/NEWS.Rd | 13 ++++++++++ inst/doc/constparty.pdf |binary inst/doc/ctree.pdf |binary inst/doc/mob.pdf |binary inst/doc/partykit.pdf |binary 11 files changed, 60 insertions(+), 48 deletions(-)
Title: A Laboratory for Recursive Partytioning
Description: A computational toolbox for recursive partitioning.
The core of the package is ctree(), an implementation of
conditional inference trees which embed tree-structured
regression models into a well defined theory of conditional
inference procedures. This non-parametric class of regression
trees is applicable to all kinds of regression problems, including
nominal, ordinal, numeric, censored as well as multivariate response
variables and arbitrary measurement scales of the covariates.
Based on conditional inference trees, cforest() provides an
implementation of Breiman's random forests. The function mob()
implements an algorithm for recursive partitioning based on
parametric models (e.g. linear models, GLMs or survival
regression) employing parameter instability tests for split
selection. Extensible functionality for visualizing tree-structured
regression models is available. The methods are described in
Hothorn et al. (2006) <doi:10.1198/106186006X133933>,
Zeileis et al. (2008) <d [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Kurt Hornik [aut],
Carolin Strobl [aut],
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between party versions 1.3-11 dated 2022-10-07 and 1.3-12 dated 2023-02-28
DESCRIPTION | 8 ++-- MD5 | 14 ++++---- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 92 ++++++++++++++++++++++------------------------------- inst/NEWS | 4 ++ inst/doc/MOB.pdf |binary inst/doc/party.pdf |binary 8 files changed, 54 insertions(+), 64 deletions(-)
Title: Visible Vowels: Visualization of Vowel Variation
Description: Visualizes vowel variation in f0, F1, F2, F3 and duration.
Author: Wilbert Heeringa [aut, cre],
Hans Van de Velde [aut]
Maintainer: Wilbert Heeringa <wheeringa@fryske-akademy.nl>
Diff between visvow versions 1.3.5 dated 2022-07-21 and 1.3.6 dated 2023-02-28
visvow-1.3.5/visvow/inst/FA1.jpg |only visvow-1.3.5/visvow/inst/format.png |only visvow-1.3.6/visvow/DESCRIPTION | 28 visvow-1.3.6/visvow/MD5 | 33 visvow-1.3.6/visvow/NAMESPACE | 7 visvow-1.3.6/visvow/R/visvow.R | 1211 +++++++--- visvow-1.3.6/visvow/build/partial.rdb |binary visvow-1.3.6/visvow/build/vignette.rds |binary visvow-1.3.6/visvow/inst/FA1.png |only visvow-1.3.6/visvow/inst/doc/visvow.pdf |binary visvow-1.3.6/visvow/inst/format1.png |only visvow-1.3.6/visvow/inst/format2.png |only visvow-1.3.6/visvow/man/normalizeDuration.Rd |only visvow-1.3.6/visvow/man/normalizeFormants.Rd |only visvow-1.3.6/visvow/man/visvow.Rd | 6 visvow-1.3.6/visvow/tests/testthat/data/Barreda_Nearey_IF.csv |only visvow-1.3.6/visvow/tests/testthat/data/Barreda_Nearey_IIF.csv |only visvow-1.3.6/visvow/tests/testthat/data/JohnsonF.csv |only visvow-1.3.6/visvow/tests/testthat/data/Labov-IF.csv |only visvow-1.3.6/visvow/tests/testthat/data/Labov-IIF.csv |only visvow-1.3.6/visvow/tests/testthat/data/Labov_IF.csv | 52 visvow-1.3.6/visvow/tests/testthat/data/Labov_IIF.csv | 52 visvow-1.3.6/visvow/tests/testthat/data/table.xlsx |only visvow-1.3.6/visvow/tests/testthat/test.R | 13 24 files changed, 985 insertions(+), 417 deletions(-)
Title: Spatial Dependence: Weighting Schemes, Statistics
Description: A collection of functions to create spatial weights matrix
objects from polygon 'contiguities', from point patterns by distance and
tessellations, for summarizing these objects, and for permitting their
use in spatial data analysis, including regional aggregation by minimum
spanning tree; a collection of tests for spatial 'autocorrelation',
including global 'Morans I' and 'Gearys C' proposed by 'Cliff' and 'Ord'
(1973, ISBN: 0850860369) and (1981, ISBN: 0850860814), 'Hubert/Mantel'
general cross product statistic, Empirical Bayes estimates and
'Assunção/Reis' (1999) <doi:10.1002/(SICI)1097-0258(19990830)18:16%3C2147::AID-SIM179%3E3.0.CO;2-I> Index, 'Getis/Ord' G ('Getis' and 'Ord' 1992)
<doi:10.1111/j.1538-4632.1992.tb00261.x> and multicoloured
join count statistics, 'APLE' ('Li 'et al.' )
<doi:10.1111/j.1538-4632.2007.00708.x>, local 'Moran's I', 'Gearys C'
('Anselin' 1995) <doi:10.1111/j.1538-4632.1995.tb00338.x> and
'Getis/Ord' G ('Ord' and 'Getis' 1995)
< [...truncated...]
Author: Roger Bivand [cre, aut] ,
Micah Altman [ctb],
Luc Anselin [ctb],
Renato Assuncao [ctb],
Olaf Berke [ctb],
F. Guillaume Blanchet [ctb],
Marilia Carvalho [ctb],
Bjarke Christensen [ctb],
Yongwan Chun [ctb],
Carsten Dormann [ctb],
Stephane Dray [ctb],
D [...truncated...]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between spdep versions 1.2-7 dated 2022-10-01 and 1.2-8 dated 2023-02-28
DESCRIPTION | 12 +-- MD5 | 113 +++++++++++++++--------------- NAMESPACE | 9 +- NEWS.md | 28 +++++++ R/globalG.R | 2 R/lisa_perm.R | 151 ++++++++++++++++++++++++++++++++--------- R/local-joincount-univariate.R | 16 +++- R/local-moran-bv.R | 14 +++ R/localC.R | 43 ++++++++--- R/localG.R | 50 ++++++------- R/localGS.R |only R/nb2listwdist.R | 4 - R/nb2mat.R | 9 ++ R/nbdists.R | 3 R/plot.skater.R | 6 + build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 35 ++++----- inst/doc/CO69.R | 73 ++++++++++--------- inst/doc/CO69.Rmd | 74 ++++++++++---------- inst/doc/CO69.html | 21 +---- inst/doc/nb.R | 29 ++++--- inst/doc/nb.Rmd | 30 ++++---- inst/doc/nb.html | 24 ++---- inst/doc/nb_sf.html | 45 +++++------- inst/doc/sids.html | 19 +---- inst/tinytest/test_cell2nb.R | 2 inst/tinytest/test_lisa_perm.R | 9 ++ man/autocov_dist.Rd | 18 ++-- man/cell2nb.Rd | 16 ++++ man/dnearneigh.Rd | 14 +-- man/globalG.test.Rd | 2 man/grid2nb.Rd | 3 man/include.self.Rd | 2 man/knearneigh.Rd | 10 +- man/knn2nb.Rd | 2 man/lm.morantest.Rd | 5 - man/localC.Rd | 10 +- man/localG.Rd | 22 +++-- man/localGS.Rd |only man/local_joincount_uni.Rd | 6 + man/localmoran.Rd | 4 - man/localmoran_bv.Rd | 4 - man/mat2listw.Rd | 4 - man/moran_bv.Rd | 6 + man/mstree.Rd | 4 - man/nb2listw.Rd | 7 + man/nbdists.Rd | 2 man/nblag.Rd | 2 man/nboperations.Rd | 2 man/poly2nb.Rd | 2 man/skater.Rd | 9 +- man/subset.nb.Rd | 2 man/testnb.Rd | 2 src/init.c | 1 src/perm_no_replace.c |only src/spdep.h | 1 vignettes/CO69.Rmd | 74 ++++++++++---------- vignettes/nb.Rmd | 30 ++++---- 59 files changed, 649 insertions(+), 438 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- common effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- three-level meta-analysis model;
- generalised linear mixed model;
- Hartung-Knapp method for random effects model;
- Kenward-Roger method for random effects model;
- prediction interval;
- statistical tests for funnel plot asymmetry;
- trim-and-fill method to evaluate bias in meta-analysis;
- meta-regression;
- cumulative meta-analysis and leave-one-out meta-analysis;
- import data from 'RevMan 5';
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between meta versions 6.2-0 dated 2023-02-14 and 6.2-1 dated 2023-02-28
DESCRIPTION | 8 ++++---- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 39 ++++++++++++++++++++++++++++++++++++--- R/forest.R | 2 -- R/meta-chk.R | 2 +- R/meta-set.R | 31 +++++++++++++++++++++++++------ R/metabin.R | 1 + R/metacont.R | 1 + R/metacor.R | 1 + R/metacr.R | 20 ++++++++++++++------ R/metagen.R | 14 ++++++++++---- R/metainc.R | 1 + R/metamean.R | 1 + R/metaprop.R | 1 + R/metarate.R | 1 + R/metareg.R | 8 ++++---- R/woodyplants.R | 3 --- man/metacr.Rd | 13 +++++++++---- man/metareg.Rd | 8 ++++---- man/woodyplants.Rd | 3 --- 20 files changed, 133 insertions(+), 63 deletions(-)
Title: Statistical Methods for Sensitivity Analysis in Meta-Analysis
Description: The following methods are implemented to evaluate how sensitive the results of a meta-analysis are to potential bias in meta-analysis and to support Schwarzer et al. (2015) <DOI:10.1007/978-3-319-21416-0>, Chapter 5 'Small-Study Effects in Meta-Analysis':
- Copas selection model described in Copas & Shi (2001) <DOI:10.1177/096228020101000402>;
- limit meta-analysis by Rücker et al. (2011) <DOI:10.1093/biostatistics/kxq046>;
- upper bound for outcome reporting bias by Copas & Jackson (2004) <DOI:10.1111/j.0006-341X.2004.00161.x>;
- imputation methods for missing binary data by Gamble & Hollis (2005) <DOI:10.1016/j.jclinepi.2004.09.013> and Higgins et al. (2008) <DOI:10.1177/1740774508091600>;
- LFK index test and Doi plot by Furuya-Kanamori et al. (2018) <DOI:10.1097/XEB.0000000000000141>.
Author: Guido Schwarzer [cre, aut] ,
James R. Carpenter [aut] ,
Gerta Ruecker [aut]
Maintainer: Guido Schwarzer <guido.schwarzer@uniklinik-freiburg.de>
Diff between metasens versions 1.5-1 dated 2022-12-21 and 1.5-2 dated 2023-02-28
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- NEWS.md | 23 +++++++++++++++++++++++ R/copas.R | 1 + R/doiplot.R | 28 +++++++++++++++++++--------- R/lfkindex.R | 5 +++++ R/meta-chk.R | 43 ++++++++++++++++++++++++++++++++++--------- R/print.copas.R | 33 ++++++++++++++++++++++++++++++++- R/print.summary.copas.R | 3 ++- man/doiplot.Rd | 8 ++++---- man/print.copas.Rd | 17 +++++++++++++++++ man/print.summary.copas.Rd | 3 ++- 12 files changed, 155 insertions(+), 41 deletions(-)
Title: Forensic Pedigree Analysis and Relatedness Inference
Description: Forensic applications of pedigree analysis, including
likelihood ratios for relationship testing, general relatedness
inference, marker simulation, and power analysis. General computation
of exclusion powers is based on Egeland et al. (2014)
<doi:10.1016/j.fsigen.2013.05.001>. Several functions deal
specifically with family reunion cases, implementing and developing
ideas from Kling et al. (2017) <doi:10.1016/j.fsigen.2017.08.006>. A
novelty of 'forrel' is the ability to model background inbreeding in
forensic pedigree computations. This can have significant impact in
applications, as exemplified in Vigeland and Egeland (2019)
<doi:10.1016/j.fsigss.2019.10.175>. 'forrel' is part of the ped suite,
a collection of packages for pedigree analysis. In particular,
'forrel' imports 'pedtools' for creating and manipulating pedigrees
and markers, 'pedprobr' for likelihood computations, and 'pedmut' for
mutation modelling. Pedigree data may be created from scratch, or
loaded [...truncated...]
Author: Magnus Dehli Vigeland [aut, cre]
,
Thore Egeland [ctb]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between forrel versions 1.4.1 dated 2022-02-25 and 1.5.0 dated 2023-02-28
DESCRIPTION | 10 +-- MD5 | 54 +++++++++--------- NEWS.md | 27 ++++++++- R/LRpower.R | 2 R/MPPsims.R | 2 R/checkPairwise.R | 14 ++-- R/data.R | 41 +++++++++++++ R/familias2ped.R | 1 R/findExclusions.R | 12 ++-- R/ibdEstimate.R | 6 +- R/kinshipLR.R | 134 +++++++++++++++++++++++++++++++++++++-------- R/missingPersonIP.R | 2 R/missingPersonLR.R | 104 ++++++++++++++++++++-------------- R/missingPersonPlot.R | 36 ++++++------ R/powerPlot.R | 17 ++--- R/profileSim.R | 106 ++++++++++++++++++++++++++--------- R/utils.R | 2 build/partial.rdb |binary data/FORCE.rda |only man/FORCE.Rd |only man/checkPairwise.Rd | 14 +--- man/findExclusions.Rd | 12 ++-- man/ibdEstimate.Rd | 6 +- man/kinshipLR.Rd | 50 ++++++++++++++-- man/missingPersonLR.Rd | 50 +++++----------- man/missingPersonPlot.Rd | 24 ++++---- man/powerPlot.Rd | 17 ++--- man/profileSim.Rd | 43 ++++++++++---- tests/testthat/test-sims.R | 4 - 29 files changed, 532 insertions(+), 258 deletions(-)
Title: Set of Tools to Compute Various Climate Indices
Description: Set of tools to compute metrics and indices for climate analysis.
The package provides functions to compute extreme indices, evaluate the
agreement between models and combine theses models into an ensemble. Multi-model
time series of climate indices can be computed either after averaging the 2-D
fields from different models provided they share a common grid or by combining
time series computed on the model native grid. Indices can be assigned weights
and/or combined to construct new indices.
Author: BSC-CNS [aut, cph],
Nuria Perez-Zanon [aut] ,
An-Chi Ho [cre, ctb],
Nicolau Manubens [ctb],
Alasdair Hunter [aut],
Louis-Philippe Caron [ctb],
Eva Rifa [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between ClimProjDiags versions 0.2.1 dated 2022-12-02 and 0.3.0 dated 2023-02-28
DESCRIPTION | 8 - MD5 | 16 +-- NAMESPACE | 1 NEWS.md | 7 + R/SelBox.R | 184 +++++++++++++++++++++++------------- R/ShiftLon.R | 22 +++- R/WeightedMean.R | 263 ++++++++++++++++++++++++++++++++-------------------- man/SelBox.Rd | 41 +++++--- man/WeightedMean.Rd | 78 +++++++++------ 9 files changed, 389 insertions(+), 231 deletions(-)
Title: R Bindings for the 'prql-compiler' Rust Library
Description: Provides a function to convert 'PRQL' strings to 'SQL' strings.
Combined with other R functions that take 'SQL' as an argument,
'PRQL' can be used on R.
Author: Tatsuya Shima [aut, cre]
Maintainer: Tatsuya Shima <ts1s1andn@gmail.com>
Diff between prqlr versions 0.2.0 dated 2023-02-18 and 0.2.1 dated 2023-02-28
DESCRIPTION | 6 +++--- LICENSE.note | 6 +++--- MD5 | 10 +++++----- NEWS.md | 7 +++++++ src/rust/Cargo.lock | 45 +++++++++++---------------------------------- src/rust/Cargo.toml | 7 +++---- 6 files changed, 32 insertions(+), 49 deletions(-)
Title: 'Opal' Data Repository Client and 'DataSHIELD' Utils
Description: Data integration Web application for biobanks by 'OBiBa'. 'Opal' is
the core database application for biobanks. Participant data, once
collected from any data source, must be integrated and stored in a central
data repository under a uniform model. 'Opal' is such a central repository.
It can import, process, validate, query, analyze, report, and export data.
'Opal' is typically used in a research center to analyze the data acquired at
assessment centres. Its ultimate purpose is to achieve seamless
data-sharing among biobanks. This 'Opal' client allows to interact with 'Opal'
web services and to perform operations on the R server side. 'DataSHIELD'
administration tools are also provided.
Author: Yannick Marcon [aut, cre] ,
Amadou Gaye [ctb] ,
OBiBa group [cph]
Maintainer: Yannick Marcon <yannick.marcon@obiba.org>
Diff between opalr versions 3.3.0 dated 2023-02-03 and 3.3.1 dated 2023-02-28
DESCRIPTION | 6 - MD5 | 12 +- R/opal.resource.R | 2 inst/doc/datashield-admin.html | 174 ++++++++++++++++++------------- inst/doc/opal-files.html | 114 +++++++++++++------- inst/doc/opal-projects.html | 224 +++++++++++++++++++++++------------------ inst/doc/opal-rsession.html | 106 ++++++++++++------- 7 files changed, 379 insertions(+), 259 deletions(-)
Title: Detecting Politeness Features in Text
Description: Detecting markers of politeness in English natural language. This package allows researchers to easily visualize and quantify politeness between groups of documents. This package combines prior research on the linguistic markers of politeness. We thank the Spencer Foundation, the Hewlett Foundation, and Harvard's Institute for Quantitative Social Science for support.
Author: Mike Yeomans, Alejandro Kantor, Dustin Tingley
Maintainer: Mike Yeomans <mk.yeomans@gmail.com>
Diff between politeness versions 0.8.8 dated 2023-01-09 and 0.8.9 dated 2023-02-28
DESCRIPTION | 6 +++--- MD5 | 21 +++++++++++++-------- NAMESPACE | 1 + R/data.R | 12 +++++++++++- R/politeModel.R |only R/politeness.R | 4 ++-- R/politenessPlot.R | 18 ++++++++++++++++-- data/polite_train.rdata |only inst/doc/politeness.html | 8 ++++---- man/polite_train.Rd |only man/politeness.Rd | 2 +- man/politenessModel.Rd |only tests/testthat/test-politeness.R | 8 ++++---- tests/testthat/test-politenessModel.R |only 14 files changed, 55 insertions(+), 25 deletions(-)
Title: Choose Univariate Class Intervals
Description: Selected commonly used methods for choosing univariate class intervals for mapping or other graphics purposes.
Author: Roger Bivand [aut, cre] ,
Bill Denney [ctb] ,
Richard Dunlap [ctb],
Diego Hernangomez [ctb] ,
Hisaji Ono [ctb],
Josiah Parry [ctb] ,
Matthieu Stigler [ctb]
Maintainer: Roger Bivand <Roger.Bivand@nhh.no>
Diff between classInt versions 0.4-8 dated 2022-09-29 and 0.4-9 dated 2023-02-28
DESCRIPTION | 10 ++++----- MD5 | 14 +++++++------ NEWS.md | 4 +++ R/classInt.R | 20 +++++++++++++++--- build/vignette.rds |binary inst/doc/headtailsR.html | 50 +++++++++++++++++++++++------------------------ inst/tinytest |only man/classIntervals.Rd | 4 +-- tests/tinytest.R |only 9 files changed, 60 insertions(+), 42 deletions(-)
Title: High-Dimensional Regression with Measurement Error
Description: Penalized regression for generalized linear models for
measurement error problems (aka. errors-in-variables). The package
contains a version of the lasso (L1-penalization) which corrects
for measurement error (Sorensen et al. (2015) <doi:10.5705/ss.2013.180>).
It also contains an implementation of the Generalized Matrix Uncertainty
Selector, which is a version the (Generalized) Dantzig Selector for the
case of measurement error (Sorensen et al. (2018) <doi:10.1080/10618600.2018.1425626>).
Author: Oystein Sorensen [aut, cre]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between hdme versions 0.5.0 dated 2022-07-20 and 0.5.1 dated 2023-02-28
DESCRIPTION | 6 - MD5 | 20 ++--- NEWS.md | 5 + build/partial.rdb |binary build/vignette.rds |binary inst/doc/hdme.R | 6 + inst/doc/hdme.Rmd | 6 + inst/doc/hdme.html | 196 ++++++++++++++++++++++++++++------------------------- src/Makevars | 2 src/Makevars.win | 2 vignettes/hdme.Rmd | 6 + 11 files changed, 142 insertions(+), 107 deletions(-)
Title: Bayesian Non- And Semi-Parametric Model Fitting
Description: MCMC algorithms & processing functions for: 1. single response multiple regression, see Papageorgiou, G. (2018) <doi: 10.32614/RJ-2018-069>, 2. multivariate response multiple regression, with nonparametric models for the means, the variances and the correlation matrix, with variable selection, see Papageorgiou, G. and Marshall, B. C. (2020) <doi: 10.1080/10618600.2020.1739534>, 3. joint mean-covariance models for multivariate responses, see Papageorgiou, G. (2022) <doi: 10.1002/sim.9376>, and 4.Dirichlet process mixtures, see Papageorgiou, G. (2019) <doi: 10.1111/anzs.12273>.
Author: Georgios Papageorgiou
Maintainer: Georgios Papageorgiou <gpapageo@gmail.com>
Diff between BNSP versions 2.2.0 dated 2022-11-26 and 2.2.1 dated 2023-02-28
DESCRIPTION | 10 +- MD5 | 23 +++--- R/bnpMulti.R | 84 +++++++++++++++++----- R/mvrm.R | 48 +++++------- R/plot.R | 4 - R/test.R |only inst/CITATION | 50 +++++++------ man/BNSP-package.Rd | 4 - man/mvrm.Rd | 31 +++++--- man/sinusoid.Rd | 15 ++- src/BNSP_init.c | 4 - src/Univariate.c | 188 +++++++++++++++++++++++++++++++++++++++++--------- src/other.functions.h | 31 ++++++++ 13 files changed, 354 insertions(+), 138 deletions(-)
Title: Translates an R Function to a C++ Function
Description: Enable translation of a tiny subset of R to C++. The user has to define a R function which gets translated. For a full list of possible functions check the documentation. After translation an R function is returned which is a shallow wrapper around the C++ code. Alternatively an external pointer to the C++ function is returned to the user. The intention of the package is to generate fast functions which can be used as ode-system or during optimization.
Author: Kraemer Konrad [aut, cre]
Maintainer: Kraemer Konrad <konrad_kraemer@yahoo.de>
Diff between ast2ast versions 0.2.1 dated 2022-10-19 and 0.3.0 dated 2023-02-28
ast2ast-0.2.1/ast2ast/inst/include/idea_for_adding_SEXP_as_type.cpp |only ast2ast-0.3.0/ast2ast/DESCRIPTION | 11 ast2ast-0.3.0/ast2ast/MD5 | 40 +- ast2ast-0.3.0/ast2ast/NAMESPACE | 1 ast2ast-0.3.0/ast2ast/NEWS | 9 ast2ast-0.3.0/ast2ast/R/codelinesclass.R | 9 ast2ast-0.3.0/ast2ast/R/compiling.R | 6 ast2ast-0.3.0/ast2ast/R/jacobian.R |only ast2ast-0.3.0/ast2ast/R/masterclass.R | 24 - ast2ast-0.3.0/ast2ast/R/node_classes.R | 65 ++-- ast2ast-0.3.0/ast2ast/R/translate.R | 5 ast2ast-0.3.0/ast2ast/build/vignette.rds |binary ast2ast-0.3.0/ast2ast/inst/doc/DetailedDocumentation.html | 119 +++----- ast2ast-0.3.0/ast2ast/inst/doc/InformationForPackageAuthors.html | 131 ++++---- ast2ast-0.3.0/ast2ast/inst/include/etr.hpp | 1 ast2ast-0.3.0/ast2ast/inst/include/etr_bits/concatenate.hpp | 148 ++++++---- ast2ast-0.3.0/ast2ast/inst/include/etr_bits/conversion.hpp |only ast2ast-0.3.0/ast2ast/inst/include/etr_bits/header.hpp | 1 ast2ast-0.3.0/ast2ast/inst/include/etr_bits/interpolation.hpp | 10 ast2ast-0.3.0/ast2ast/inst/include/etr_bits/vec.hpp | 15 - ast2ast-0.3.0/ast2ast/inst/tinytest/test_all.R | 32 +- ast2ast-0.3.0/ast2ast/man/J.rd |only ast2ast-0.3.0/ast2ast/man/translate.Rd | 10 23 files changed, 362 insertions(+), 275 deletions(-)
Title: Using Block Model to Estimate the Robustness of Ecological
Network
Description: Implementation of a variety of methods to compute
the robustness of ecological interaction networks with binary interactions
as described in <doi:10.1002/env.2709>. In particular, using the Stochastic
Block Model and its bipartite counterpart, the Latent Block Model to put a
parametric model on the network, allows the comparison of the robustness of
networks differing in species richness and number of interactions. It also
deals with networks that are partially sampled and/or with missing values.
Author: Saint-Clair Chabert-Liddell [aut, cre]
Maintainer: Saint-Clair Chabert-Liddell <academic@chabert-liddell.com>
Diff between robber versions 0.2.2 dated 2021-09-20 and 0.2.3 dated 2023-02-28
DESCRIPTION | 16 - MD5 | 32 +- NEWS.md | 13 R/hostparasite.R | 2 R/pollination.R | 2 R/seeddispersal.R | 2 R/variance.R | 6 README.md | 25 + build/vignette.rds |binary inst/CITATION | 17 - inst/doc/topological-analysis.R | 6 inst/doc/topological-analysis.Rmd | 6 inst/doc/topological-analysis.html | 511 ++++++++++++++++++++++++++++--------- man/hostparasite.Rd | 2 man/pollination.Rd | 2 man/seeddispersal.Rd | 2 vignettes/topological-analysis.Rmd | 6 17 files changed, 483 insertions(+), 167 deletions(-)
Title: Convert Between R Objects and Geometric Structures
Description: Geometry shapes in 'R' are typically represented by matrices (points, lines), with more complex
shapes being lists of matrices (polygons). 'Geometries' will convert various 'R' objects into these shapes.
Conversion functions are available at both the 'R' level, and through 'Rcpp'.
Author: David Cooley [aut, cre]
Maintainer: David Cooley <david.cooley.au@gmail.com>
Diff between geometries versions 0.2.1 dated 2023-02-23 and 0.2.2 dated 2023-02-28
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/vignette.rds |binary inst/doc/geometries.html | 14 +++----------- inst/include/geometries/geometries.hpp | 3 --- 5 files changed, 11 insertions(+), 22 deletions(-)
Title: R Client for the 'Civis Platform API'
Description: A convenient interface for making
requests directly to the 'Civis Platform API' <https://www.civisanalytics.com/platform/>.
Full documentation available 'here' <https://civisanalytics.github.io/civis-r/>.
Author: Peter Cooman [cre, ctb],
Patrick Miller [aut],
Keith Ingersoll [aut],
Bill Lattner [ctb],
Anh Le [ctb],
Michelangelo D'Agostino [ctb],
Sam Weiss [ctb],
Stephen Hoover [ctb],
Danning Chen [ctb],
Elizabeth Sander [ctb],
Madison Hobbs [ctb],
Anna Bladey [...truncated...]
Maintainer: Peter Cooman <pcooman@civisanalytics.com>
Diff between civis versions 3.1.0 dated 2023-02-22 and 3.1.1 dated 2023-02-28
civis-3.1.0/civis/man/admin_delete_announcements.Rd |only civis-3.1.0/civis/man/admin_get_announcements.Rd |only civis-3.1.0/civis/man/admin_list_announcements.Rd |only civis-3.1.0/civis/man/admin_patch_announcements.Rd |only civis-3.1.0/civis/man/admin_patch_themes.Rd |only civis-3.1.0/civis/man/admin_post_announcements.Rd |only civis-3.1.0/civis/man/admin_post_themes.Rd |only civis-3.1.0/civis/man/clusters_patch_kubernetes.Rd |only civis-3.1.0/civis/man/clusters_post_kubernetes.Rd |only civis-3.1.0/civis/man/feature_flags_delete_groups.Rd |only civis-3.1.0/civis/man/feature_flags_delete_organizations.Rd |only civis-3.1.0/civis/man/feature_flags_delete_users.Rd |only civis-3.1.0/civis/man/feature_flags_get.Rd |only civis-3.1.0/civis/man/feature_flags_list.Rd |only civis-3.1.0/civis/man/feature_flags_put_groups.Rd |only civis-3.1.0/civis/man/feature_flags_put_organizations.Rd |only civis-3.1.0/civis/man/feature_flags_put_users.Rd |only civis-3.1.0/civis/man/templates_post_reports_review.Rd |only civis-3.1.0/civis/man/templates_post_scripts_review.Rd |only civis-3.1.0/civis/man/users_list_me_ui.Rd |only civis-3.1.1/civis/DESCRIPTION | 8 civis-3.1.1/civis/MD5 | 32 civis-3.1.1/civis/NAMESPACE | 20 civis-3.1.1/civis/R/civis_future.R | 25 civis-3.1.1/civis/R/generated_client.R | 672 ------------ civis-3.1.1/civis/inst/doc/civis_scripts.html | 4 civis-3.1.1/civis/tests/testthat/test_civis_future.R | 2 27 files changed, 34 insertions(+), 729 deletions(-)
Title: Chemical Structural Similarity Analysis
Description: A new pipeline to explore chemical structural similarity across metabolite. It allows to classify metabolites in structurally-related modules and identify common shared functional groups. KODAMA algorithm is used to highlight structural similarity between metabolites. See Cacciatore S, Tenori L, Luchinat C, Bennett PR, MacIntyre DA. (2017) Bioinformatics <doi:10.1093/bioinformatics/btw705> and Cacciatore S, Luchinat C, Tenori L. (2014) Proc Natl Acad Sci USA <doi:10.1073/pnas.1220873111>.
Author: Ebtesam Abdel-Shafy [aut],
Tadele Melak [aut],
David A. MacIntyre [aut],
Giorgia Zadra [aut],
Luiz F. Zerbini [aut],
Silvano Piazza [aut],
Stefano Cacciatore [aut, cre]
Maintainer: Stefano Cacciatore <tkcaccia@gmail.com>
Diff between MetChem versions 0.2 dated 2023-02-02 and 0.3 dated 2023-02-28
MetChem-0.2/MetChem/man/modules.detection.Rd |only MetChem-0.2/MetChem/vignettes/FLindex_example2.pdf |only MetChem-0.2/MetChem/vignettes/KODAMA_example2.pdf |only MetChem-0.2/MetChem/vignettes/KODAMA_example2B.pdf |only MetChem-0.3/MetChem/DESCRIPTION | 8 MetChem-0.3/MetChem/MD5 | 44 - MetChem-0.3/MetChem/NAMESPACE | 6 MetChem-0.3/MetChem/R/Main.R | 284 ++++---- MetChem-0.3/MetChem/build/vignette.rds |binary MetChem-0.3/MetChem/data/ChemRICH.RData |binary MetChem-0.3/MetChem/data/HFD.RData |binary MetChem-0.3/MetChem/data/Metabolites.RData |binary MetChem-0.3/MetChem/inst/doc/MetChem.R | 45 - MetChem-0.3/MetChem/inst/doc/MetChem.Rmd | 210 ++---- MetChem-0.3/MetChem/inst/doc/MetChem.pdf |binary MetChem-0.3/MetChem/man/WMCSA.Rd | 21 MetChem-0.3/MetChem/man/allbranches.Rd |only MetChem-0.3/MetChem/man/clusters.detection.Rd |only MetChem-0.3/MetChem/man/features.Rd | 15 MetChem-0.3/MetChem/vignettes/FLindex.pdf |binary MetChem-0.3/MetChem/vignettes/KODAMA.pdf |binary MetChem-0.3/MetChem/vignettes/KODAMAall.pdf |binary MetChem-0.3/MetChem/vignettes/KODAMAselection.pdf |binary MetChem-0.3/MetChem/vignettes/MetChem.Rmd | 210 ++---- MetChem-0.3/MetChem/vignettes/MetChem.html | 706 +++++++++------------ MetChem-0.3/MetChem/vignettes/heatmap.pdf |binary 26 files changed, 733 insertions(+), 816 deletions(-)
Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way
fixed effect regressions a la Wooldridge (2021, 2022)
<doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre] ,
Frederic Kluser [ctb]
Maintainer: Grant McDermott <grantmcd@uoregon.edu>
Diff between etwfe versions 0.3.0 dated 2023-02-08 and 0.3.1 dated 2023-02-28
DESCRIPTION | 10 MD5 | 26 - NEWS.md | 20 + R/emfx.R | 15 R/etwfe.R | 12 README.md | 16 inst/doc/etwfe.R | 6 inst/doc/etwfe.Rmd | 45 +- inst/doc/etwfe.html | 707 ++++++++++++++++++++--------------------- inst/tinytest/test_emfx.R | 25 - inst/tinytest/test_emfx_xvar.R | 15 man/emfx.Rd | 12 man/etwfe.Rd | 12 vignettes/etwfe.Rmd | 45 +- 14 files changed, 502 insertions(+), 464 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-03 2.1.3
2022-08-07 2.1.2
2022-04-12 2.1.0
2021-04-16 1.0.5
2021-04-09 1.0.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-13 1.1.7
2022-12-08 1.1.6
2022-12-06 1.1.5
2022-09-19 1.1.1
2022-08-22 1.0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-04-06 0.1.2.0
Title: Morphological Analysis for Japanese
Description: Supports morphological analysis for Japanese by using 'MeCab'.
Can input data.frame and obtain all results of 'MeCab' and row number of
original data.frame as a text id.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between moranajp versions 0.9.5 dated 2022-07-11 and 0.9.6 dated 2023-02-28
moranajp-0.9.5/moranajp/R/cleaning.R |only moranajp-0.9.5/moranajp/man/add_series_no.Rd |only moranajp-0.9.5/moranajp/tools/neko.csv |only moranajp-0.9.5/moranajp/tools/review.csv |only moranajp-0.9.5/moranajp/tools/review.txt |only moranajp-0.9.5/moranajp/tools/review_2.txt |only moranajp-0.9.5/moranajp/tools/sjis.txt |only moranajp-0.9.5/moranajp/tools/utf8.txt |only moranajp-0.9.6/moranajp/DESCRIPTION | 14 moranajp-0.9.6/moranajp/MD5 | 118 ++- moranajp-0.9.6/moranajp/NAMESPACE | 33 moranajp-0.9.6/moranajp/NEWS.md | 13 moranajp-0.9.6/moranajp/R/bigram.R | 143 ++- moranajp-0.9.6/moranajp/R/clean_up.R |only moranajp-0.9.6/moranajp/R/data.R | 299 +++++--- moranajp-0.9.6/moranajp/R/make_group.R | 24 moranajp-0.9.6/moranajp/R/moranajp.R | 573 ++++++++++++---- moranajp-0.9.6/moranajp/R/structure.R |only moranajp-0.9.6/moranajp/R/utils_iconv.R |only moranajp-0.9.6/moranajp/R/utils_id.R | 103 ++ moranajp-0.9.6/moranajp/build/vignette.rds |binary moranajp-0.9.6/moranajp/data/neko.rda |binary moranajp-0.9.6/moranajp/data/neko_chamame.rda |binary moranajp-0.9.6/moranajp/data/neko_ginza.rda |only moranajp-0.9.6/moranajp/data/neko_mecab.rda |binary moranajp-0.9.6/moranajp/data/neko_sudachi_a.rda |only moranajp-0.9.6/moranajp/data/neko_sudachi_b.rda |only moranajp-0.9.6/moranajp/data/neko_sudachi_c.rda |only moranajp-0.9.6/moranajp/data/review.rda |binary moranajp-0.9.6/moranajp/data/review_chamame.rda |binary moranajp-0.9.6/moranajp/data/review_ginza.rda |only moranajp-0.9.6/moranajp/data/review_mecab.rda |binary moranajp-0.9.6/moranajp/data/review_sudachi_a.rda |only moranajp-0.9.6/moranajp/data/review_sudachi_b.rda |only moranajp-0.9.6/moranajp/data/review_sudachi_c.rda |only moranajp-0.9.6/moranajp/inst/doc/moranajp.R | 19 moranajp-0.9.6/moranajp/inst/doc/moranajp.Rmd | 19 moranajp-0.9.6/moranajp/inst/doc/moranajp.html | 298 ++------ moranajp-0.9.6/moranajp/inst/doc/structure.R |only moranajp-0.9.6/moranajp/inst/doc/structure.Rmd |only moranajp-0.9.6/moranajp/inst/doc/structure.html |only moranajp-0.9.6/moranajp/man/add_group.Rd |only moranajp-0.9.6/moranajp/man/add_id.Rd |only moranajp-0.9.6/moranajp/man/add_sentence_no.Rd |only moranajp-0.9.6/moranajp/man/add_text_id.Rd |only moranajp-0.9.6/moranajp/man/add_word_id.Rd |only moranajp-0.9.6/moranajp/man/adjust_sentence.Rd |only moranajp-0.9.6/moranajp/man/align_sentence.Rd |only moranajp-0.9.6/moranajp/man/calc_diff_x_pos.Rd |only moranajp-0.9.6/moranajp/man/clean_up.Rd | 54 + moranajp-0.9.6/moranajp/man/delete_parenthesis.Rd |only moranajp-0.9.6/moranajp/man/draw_bigram_network.Rd | 76 +- moranajp-0.9.6/moranajp/man/escape_japanese.Rd |only moranajp-0.9.6/moranajp/man/iconv_x.Rd |only moranajp-0.9.6/moranajp/man/make_groups.Rd | 51 + moranajp-0.9.6/moranajp/man/moranajp_all.Rd | 99 ++ moranajp-0.9.6/moranajp/man/neko.Rd | 2 moranajp-0.9.6/moranajp/man/neko_chamame.Rd | 26 moranajp-0.9.6/moranajp/man/neko_ginza.Rd |only moranajp-0.9.6/moranajp/man/neko_mecab.Rd | 29 moranajp-0.9.6/moranajp/man/neko_sudachi_a.Rd |only moranajp-0.9.6/moranajp/man/pipe.Rd | 40 - moranajp-0.9.6/moranajp/man/position_paragraph.Rd |only moranajp-0.9.6/moranajp/man/position_sentence.Rd |only moranajp-0.9.6/moranajp/man/remove_brk.Rd |only moranajp-0.9.6/moranajp/man/review.Rd | 18 moranajp-0.9.6/moranajp/man/review_chamame.Rd | 29 moranajp-0.9.6/moranajp/man/review_ginza.Rd |only moranajp-0.9.6/moranajp/man/review_mecab.Rd | 34 moranajp-0.9.6/moranajp/man/review_sudachi_a.Rd |only moranajp-0.9.6/moranajp/man/stop_words.Rd | 2 moranajp-0.9.6/moranajp/man/synonym.Rd | 2 moranajp-0.9.6/moranajp/man/text_id_with_break.Rd | 74 +- moranajp-0.9.6/moranajp/man/unescape_utf.Rd |only moranajp-0.9.6/moranajp/man/web_chamame.Rd |only moranajp-0.9.6/moranajp/tests/testthat/test-moranajp.R | 39 - moranajp-0.9.6/moranajp/tests/testthat/test-structure.R |only moranajp-0.9.6/moranajp/tools/cran-comments_old.md | 6 moranajp-0.9.6/moranajp/tools/sjis_sample.txt |only moranajp-0.9.6/moranajp/tools/utf8_sample.txt |only moranajp-0.9.6/moranajp/tools/wamei.R |only moranajp-0.9.6/moranajp/tools/wamei.txt |only moranajp-0.9.6/moranajp/vignettes/moranajp.Rmd | 19 moranajp-0.9.6/moranajp/vignettes/structure.Rmd |only 84 files changed, 1440 insertions(+), 816 deletions(-)
Title: Statistical Modelling for Plant Size Distributions
Description: Developed for the following tasks. 1 ) Computing the probability density function,
cumulative distribution function, random generation, and estimating the parameters
of the eleven mixture models. 2 ) Point estimation of the parameters of two -
parameter Weibull distribution using twelve methods and three - parameter Weibull
distribution using nine methods. 3 ) The Bayesian inference for the three -
parameter Weibull distribution. 4 ) Estimating parameters of the three - parameter
Birnbaum - Saunders, generalized exponential, and Weibull distributions fitted to
grouped data using three methods including approximated maximum likelihood,
expectation maximization, and maximum likelihood. 5 ) Estimating the parameters
of the gamma, log-normal, and Weibull mixture models fitted to the grouped data
through the EM algorithm, 6 ) Estimating parameters of the nonlinear height curve
fitted to the height - diameter observation, 7 ) Estimating parameters, computing
probability density function, cum [...truncated...]
Author: Mahdi Teimouri [aut, cre, cph, ctb]
Maintainer: Mahdi Teimouri <teimouri@aut.ac.ir>
Diff between ForestFit versions 1.2.3 dated 2021-10-16 and 2.2.3 dated 2023-02-28
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/ForestFit.R | 47 ++++++++++++++++++++++++++++++++++------------- man/fitbayesJSB.Rd | 4 +++- man/fitbayesWeibull.Rd | 6 ++++-- man/fitcurve.Rd | 11 ++++++----- man/skewtreg.Rd | 4 +++- 7 files changed, 61 insertions(+), 33 deletions(-)