Title: Optimal Subset Cardinality Regression (OSCAR) Models Using the
L0-Pseudonorm
Description: Optimal Subset Cardinality Regression (OSCAR) models offer
regularized linear regression using the L0-pseudonorm, conventionally
known as the number of non-zero coefficients. The package estimates an
optimal subset of features using the L0-penalization via
cross-validation, bootstrapping and visual diagnostics. Effective
Fortran implementations are offered along the package for finding
optima for the DC-decomposition, which is used for transforming the
discrete L0-regularized optimization problem into a continuous
non-convex optimization task. These optimization modules include DBDC
('Double Bundle method for nonsmooth DC optimization' as described in
Joki et al. (2018) <doi:10.1137/16M1115733>) and LMBM ('Limited
Memory Bundle Method for large-scale nonsmooth optimization' as
in Haarala et al. (2004) <doi:10.1080/10556780410001689225>).
Multiple regression model families are supported: Cox, logistic,
and Gaussian.
Author: Teemu Daniel Laajala [aut, cre]
,
Kaisa Joki [aut],
Anni Halkola [aut]
Maintainer: Teemu Daniel Laajala <teelaa@utu.fi>
Diff between oscar versions 1.0.4 dated 2022-05-23 and 1.1.2-2 dated 2023-03-12
oscar-1.0.4/oscar/README.md |only oscar-1.1.2-2/oscar/DESCRIPTION | 14 oscar-1.1.2-2/oscar/MD5 | 31 oscar-1.1.2-2/oscar/NAMESPACE | 3 oscar-1.1.2-2/oscar/R/fitS4.R | 114 oscar-1.1.2-2/oscar/R/helpers.R | 61 oscar-1.1.2-2/oscar/R/pckg.R | 5 oscar-1.1.2-2/oscar/R/zzz.R |only oscar-1.1.2-2/oscar/build/vignette.rds |binary oscar-1.1.2-2/oscar/inst/CITATION |only oscar-1.1.2-2/oscar/inst/doc/example.Rmd | 12 oscar-1.1.2-2/oscar/inst/doc/example.html | 135 oscar-1.1.2-2/oscar/man/oscar-package.Rd | 2 oscar-1.1.2-2/oscar/man/oscar.Rd | 12 oscar-1.1.2-2/oscar/src/Makevars | 2 oscar-1.1.2-2/oscar/src/dbdc.f90 | 8428 ++++++++++++++++++++++-------- oscar-1.1.2-2/oscar/src/oscarc.c | 42 oscar-1.1.2-2/oscar/vignettes/example.Rmd | 12 18 files changed, 6565 insertions(+), 2308 deletions(-)
Title: Core Utilities for Single-Cell RNA-Seq
Description: Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.
Author: Viktor Petukhov [aut],
Ramus Rydbirk [aut],
Peter Kharchenko [aut],
Evan Biederstedt [aut, cre]
Maintainer: Evan Biederstedt <evan.biederstedt@gmail.com>
Diff between sccore versions 1.0.2 dated 2022-08-23 and 1.0.3 dated 2023-03-12
DESCRIPTION | 11 ++-- MD5 | 23 ++++++---- NAMESPACE | 7 +++ R/helpers.R | 38 ++++++++++++++++ R/plots.R | 98 +++++++++++++++++++++++++------------------ R/saveDeAsJson.R |only README.md | 2 inst/extdata |only man/checkPackageInstalled.Rd |only man/dotPlot.Rd | 14 +++--- man/saveDeAsJson.Rd |only src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 1 14 files changed, 130 insertions(+), 66 deletions(-)
Title: Handling Taxonomic Lists
Description: Handling taxonomic lists through objects of class 'taxlist'.
This package provides functions to import species lists from 'Turboveg'
(<https://www.synbiosys.alterra.nl/turboveg/>) and the possibility to create
backups from resulting R-objects.
Also quick displays are implemented as summary-methods.
Author: Miguel Alvarez [aut, cre] ,
Zachary Foster [ctb] ,
Sam Levin [rev],
Margaret Siple [rev]
Maintainer: Miguel Alvarez <kamapu78@gmail.com>
Diff between taxlist versions 0.2.3 dated 2022-09-12 and 0.2.4 dated 2023-03-12
taxlist-0.2.3/taxlist/R/as.R |only taxlist-0.2.3/taxlist/R/tnrs.R |only taxlist-0.2.3/taxlist/man/tnrs.Rd |only taxlist-0.2.4/taxlist/DESCRIPTION | 29 - taxlist-0.2.4/taxlist/MD5 | 136 +++--- taxlist-0.2.4/taxlist/NAMESPACE | 84 ++- taxlist-0.2.4/taxlist/NEWS.md | 35 + taxlist-0.2.4/taxlist/R/Extract.R | 6 taxlist-0.2.4/taxlist/R/accepted_name.R | 482 +++++++++------------- taxlist-0.2.4/taxlist/R/add_concept.R |only taxlist-0.2.4/taxlist/R/backup_object.R | 69 --- taxlist-0.2.4/taxlist/R/clean.R | 38 - taxlist-0.2.4/taxlist/R/clean_strings.R | 12 taxlist-0.2.4/taxlist/R/coerce-methods.R |only taxlist-0.2.4/taxlist/R/count_taxa.R | 18 taxlist-0.2.4/taxlist/R/deprecated-functions.R | 42 + taxlist-0.2.4/taxlist/R/df2taxlist.R | 217 ++------- taxlist-0.2.4/taxlist/R/dissect_name.R | 9 taxlist-0.2.4/taxlist/R/get_children.R | 161 ++----- taxlist-0.2.4/taxlist/R/id_generator.R |only taxlist-0.2.4/taxlist/R/imports.R | 14 taxlist-0.2.4/taxlist/R/indented_list.R | 13 taxlist-0.2.4/taxlist/R/levels.R | 87 +-- taxlist-0.2.4/taxlist/R/match_names.R | 329 +++++++-------- taxlist-0.2.4/taxlist/R/matched_names-class.R |only taxlist-0.2.4/taxlist/R/merge_taxa.R | 101 ---- taxlist-0.2.4/taxlist/R/print_name.R | 44 -- taxlist-0.2.4/taxlist/R/replace_x.R | 45 -- taxlist-0.2.4/taxlist/R/subset.R | 8 taxlist-0.2.4/taxlist/R/summary.R | 18 taxlist-0.2.4/taxlist/R/tax2traits.R | 158 +++---- taxlist-0.2.4/taxlist/R/taxlist-class.R | 17 taxlist-0.2.4/taxlist/R/taxon_names.R | 317 +++++--------- taxlist-0.2.4/taxlist/R/taxon_relations.R | 342 +-------------- taxlist-0.2.4/taxlist/R/taxon_traits.R | 173 ++----- taxlist-0.2.4/taxlist/R/taxon_views.R | 111 +---- taxlist-0.2.4/taxlist/R/tv2taxlist.R | 8 taxlist-0.2.4/taxlist/build/partial.rdb |binary taxlist-0.2.4/taxlist/build/vignette.rds |binary taxlist-0.2.4/taxlist/data/Easplist.rda |binary taxlist-0.2.4/taxlist/inst/CITATION | 21 taxlist-0.2.4/taxlist/inst/doc/taxlist-intro.R | 64 +- taxlist-0.2.4/taxlist/inst/doc/taxlist-intro.Rmd | 74 ++- taxlist-0.2.4/taxlist/inst/doc/taxlist-intro.html | 266 ++++++------ taxlist-0.2.4/taxlist/man/Deprecated-functions.Rd | 5 taxlist-0.2.4/taxlist/man/Extract.Rd | 4 taxlist-0.2.4/taxlist/man/accepted_name.Rd | 96 ++-- taxlist-0.2.4/taxlist/man/add_concept.Rd |only taxlist-0.2.4/taxlist/man/backup_object.Rd | 22 - taxlist-0.2.4/taxlist/man/clean.Rd | 3 taxlist-0.2.4/taxlist/man/clean_strings.Rd | 2 taxlist-0.2.4/taxlist/man/coerce-methods.Rd | 38 - taxlist-0.2.4/taxlist/man/count_taxa.Rd | 4 taxlist-0.2.4/taxlist/man/df2taxlist.Rd | 12 taxlist-0.2.4/taxlist/man/dissect_name.Rd | 11 taxlist-0.2.4/taxlist/man/get_children.Rd | 44 -- taxlist-0.2.4/taxlist/man/id_generator.Rd |only taxlist-0.2.4/taxlist/man/indented_list.Rd | 6 taxlist-0.2.4/taxlist/man/levels.Rd | 20 taxlist-0.2.4/taxlist/man/match_names.Rd | 101 ++-- taxlist-0.2.4/taxlist/man/matched_names-class.Rd |only taxlist-0.2.4/taxlist/man/merge_taxa.Rd | 36 - taxlist-0.2.4/taxlist/man/print_name.Rd | 37 - taxlist-0.2.4/taxlist/man/replace_x.Rd | 34 - taxlist-0.2.4/taxlist/man/subset.Rd | 11 taxlist-0.2.4/taxlist/man/summary.Rd | 2 taxlist-0.2.4/taxlist/man/tax2traits.Rd | 9 taxlist-0.2.4/taxlist/man/taxlist-class.Rd | 6 taxlist-0.2.4/taxlist/man/taxon_names.Rd | 53 +- taxlist-0.2.4/taxlist/man/taxon_relations.Rd | 69 --- taxlist-0.2.4/taxlist/man/taxon_traits.Rd | 33 - taxlist-0.2.4/taxlist/man/taxon_views.Rd | 30 - taxlist-0.2.4/taxlist/man/tv2taxlist.Rd | 7 taxlist-0.2.4/taxlist/vignettes/taxlist-intro.Rmd | 74 ++- 74 files changed, 1707 insertions(+), 2610 deletions(-)
Title: Emax Model Analysis with 'Stan'
Description: Perform sigmoidal Emax model fit using 'Stan' in a formula notation, without writing 'Stan' model code.
Author: Kenta Yoshida [aut, cre] ,
Trustees of Columbia University [cph]
Maintainer: Kenta Yoshida <yoshida.kenta.6@gmail.com>
Diff between rstanemax versions 0.1.3 dated 2020-11-24 and 0.1.4 dated 2023-03-12
rstanemax-0.1.3/rstanemax/R/zzz.R |only rstanemax-0.1.3/rstanemax/data/exposure.response.sample.test.rda |only rstanemax-0.1.3/rstanemax/inst/include/meta_header.hpp |only rstanemax-0.1.3/rstanemax/man/exposure.response.sample.test.Rd |only rstanemax-0.1.3/rstanemax/src/init.cpp |only rstanemax-0.1.3/rstanemax/src/stan_files |only rstanemax-0.1.3/rstanemax/tools |only rstanemax-0.1.4/rstanemax/DESCRIPTION | 19 rstanemax-0.1.4/rstanemax/MD5 | 63 rstanemax-0.1.4/rstanemax/NAMESPACE | 1 rstanemax-0.1.4/rstanemax/NEWS.md | 5 rstanemax-0.1.4/rstanemax/R/extract_param.R |only rstanemax-0.1.4/rstanemax/R/set_prior.R | 2 rstanemax-0.1.4/rstanemax/R/stan_emax.R | 4 rstanemax-0.1.4/rstanemax/R/stanemax-methods.R | 1 rstanemax-0.1.4/rstanemax/R/stanmodels.R | 54 rstanemax-0.1.4/rstanemax/R/yyy.R | 4 rstanemax-0.1.4/rstanemax/README.md | 23 rstanemax-0.1.4/rstanemax/build/vignette.rds |binary rstanemax-0.1.4/rstanemax/configure |only rstanemax-0.1.4/rstanemax/configure.win |only rstanemax-0.1.4/rstanemax/data/exposure.response.sample.with.cov.rda |only rstanemax-0.1.4/rstanemax/inst/doc/emaxmodel.R | 31 rstanemax-0.1.4/rstanemax/inst/doc/emaxmodel.Rmd | 34 rstanemax-0.1.4/rstanemax/inst/doc/emaxmodel.html | 640 +++++----- rstanemax-0.1.4/rstanemax/inst/include/stan_meta_header.hpp |only rstanemax-0.1.4/rstanemax/inst/stan |only rstanemax-0.1.4/rstanemax/man/exposure.response.sample.with.cov.Rd |only rstanemax-0.1.4/rstanemax/man/extract_param.Rd |only rstanemax-0.1.4/rstanemax/man/figures/README-unnamed-chunk-3-1.png |binary rstanemax-0.1.4/rstanemax/man/stan_emax.Rd | 4 rstanemax-0.1.4/rstanemax/src/Makevars | 23 rstanemax-0.1.4/rstanemax/src/Makevars.win | 24 rstanemax-0.1.4/rstanemax/src/RcppExports.cpp |only rstanemax-0.1.4/rstanemax/src/stanExports_emax.cc |only rstanemax-0.1.4/rstanemax/src/stanExports_emax.h |only rstanemax-0.1.4/rstanemax/tests/testthat/test-create_model_frame.R | 8 rstanemax-0.1.4/rstanemax/tests/testthat/test-extract_param.R |only rstanemax-0.1.4/rstanemax/tests/testthat/test-posterior_predict.R | 2 rstanemax-0.1.4/rstanemax/tests/testthat/test-stan_emax.R | 2 rstanemax-0.1.4/rstanemax/vignettes/emaxmodel.Rmd | 34 41 files changed, 498 insertions(+), 480 deletions(-)
Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Damir Pulatov [cre, aut],
Michel Lang [aut]
Maintainer: Damir Pulatov <damirpolat@protonmail.com>
Diff between mlr3cluster versions 0.1.7 dated 2023-03-10 and 0.1.8 dated 2023-03-12
DESCRIPTION | 11 ++++++----- MD5 | 20 ++++++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/LearnerClustSimpleKMeans.R | 10 +++++++++- R/TaskClust_ruspini.R |only R/bibentries.R |only R/zzz.R | 1 + README.md | 2 +- build |only man/mlr_learners_clust.SimpleKMeans.Rd | 4 +++- man/mlr_tasks_ruspini.Rd |only tests/testthat/test_TaskClust.R | 7 +++++++ 13 files changed, 44 insertions(+), 16 deletions(-)
Title: Pac-Man Visualization Package
Description: Provides a broad-view perspective on data via
linear mapping of data onto a radial coordinate system. The package
contains functions to visualize the residual values of linear
regression and Cartesian data in the defined radial scheme. See the
'pacviz' documentation page for more information:
<https://pacviz.sriley.dev/>.
Author: Spencer Riley [aut, cre]
Maintainer: Spencer Riley <academic@sriley.dev>
Diff between pacviz versions 1.0.2 dated 2022-08-16 and 1.0.3 dated 2023-03-12
pacviz-1.0.2/pacviz/man/svm.partition.Rd |only pacviz-1.0.3/pacviz/DESCRIPTION | 8 - pacviz-1.0.3/pacviz/MD5 | 14 +- pacviz-1.0.3/pacviz/NAMESPACE | 3 pacviz-1.0.3/pacviz/R/util.r | 2 pacviz-1.0.3/pacviz/R/zzz.R | 2 pacviz-1.0.3/pacviz/build/vignette.rds |binary pacviz-1.0.3/pacviz/inst/doc/pacviz.html | 204 +++++++++++-------------------- pacviz-1.0.3/pacviz/man/pac.partition.Rd |only 9 files changed, 89 insertions(+), 144 deletions(-)
Title: Solvers for Initial Value Problems of Differential Equations
('ODE', 'DAE', 'DDE')
Description: Functions that solve initial value problems of a system
of first-order ordinary differential equations ('ODE'), of
partial differential equations ('PDE'), of differential
algebraic equations ('DAE'), and of delay differential
equations. The functions provide an interface to the FORTRAN
functions 'lsoda', 'lsodar', 'lsode', 'lsodes' of the 'ODEPACK'
collection, to the FORTRAN functions 'dvode', 'zvode' and 'daspk'
and a C-implementation of solvers of the 'Runge-Kutta' family with
fixed or variable time steps. The package contains routines
designed for solving 'ODEs' resulting from 1-D, 2-D and 3-D
partial differential equations ('PDE') that have been converted
to 'ODEs' by numerical differencing.
Author: Karline Soetaert [aut] ,
Thomas Petzoldt [aut, cre] ,
R. Woodrow Setzer [aut] ,
Peter N. Brown [ctb] ,
George D. Byrne [ctb] ,
Ernst Hairer [ctb] ,
Alan C. Hindmarsh [ctb] ,
Cleve Moler [ctb] ,
Linda R. Petzold [ctb] ,
Youcef Saad [ctb] ,
Clement W. [...truncated...]
Maintainer: Thomas Petzoldt <thomas.petzoldt@tu-dresden.de>
Diff between deSolve versions 1.34 dated 2022-10-22 and 1.35 dated 2023-03-12
deSolve-1.34/deSolve/NEWS |only deSolve-1.34/deSolve/inst/doc/source/sourcefiles.txt |only deSolve-1.35/deSolve/DESCRIPTION | 6 deSolve-1.35/deSolve/MD5 | 32 - deSolve-1.35/deSolve/NAMESPACE | 2 deSolve-1.35/deSolve/NEWS.md |only deSolve-1.35/deSolve/R/forcings.R | 314 +++++------ deSolve-1.35/deSolve/R/functions.R | 7 deSolve-1.35/deSolve/R/lsoda.R | 520 ++++++++++--------- deSolve-1.35/deSolve/build/partial.rdb |binary deSolve-1.35/deSolve/build/vignette.rds |binary deSolve-1.35/deSolve/data/ccl4data.rda |binary deSolve-1.35/deSolve/inst/CITATION | 9 deSolve-1.35/deSolve/inst/doc/compiledCode.pdf |binary deSolve-1.35/deSolve/inst/doc/deSolve.pdf |binary deSolve-1.35/deSolve/inst/doc/dynload-fastlsoda |only deSolve-1.35/deSolve/man/checkDLL.Rd |only deSolve-1.35/deSolve/man/deSolve.Rd | 294 +++++----- deSolve-1.35/deSolve/man/lsoda.Rd | 62 +- 19 files changed, 645 insertions(+), 601 deletions(-)
Title: A Tool for Creating Custom Neural Networks in C++ and using Them
in R
Description: Contains a module to define neural networks from custom components and versions of Autoencoder, BP, LVQ, MAM NN.
Author: Vasilis Nikolaidis [aut, cph, cre]
Maintainer: Vasilis Nikolaidis <vnikolaidis@us.uop.gr>
Diff between nnlib2Rcpp versions 0.2.0 dated 2023-02-21 and 0.2.1 dated 2023-03-12
DESCRIPTION | 6 MD5 | 46 ++++--- inst/doc/manual.pdf |binary man/NN-R-components.Rd |only man/NN-class.Rd | 24 ++- man/NN-components.Rd | 4 src/Rcpp_LVQ_unsupervised.cpp | 2 src/Rcpp_NN_module.cpp | 258 +++++++++++++++++++++++++++-------------- src/Rcpp_R_aux_control.h |only src/Rcpp_R_connection_matrix.h |only src/Rcpp_R_layer.h |only src/additional_parts.h | 46 ++++++- src/additional_parts_other.h | 18 ++ src/component.cpp | 3 src/component.h | 3 src/connection_matrix.cpp |only src/connection_matrix.h |only src/connection_set.h | 37 +++-- src/layer.h | 1 src/nn.cpp | 10 + src/nn.h | 1 src/nn_bp.cpp | 104 +++++++++++++--- src/nn_bp.h | 15 ++ src/nnlib2.h | 2 src/nnlib2_memory.cpp | 6 src/pe.cpp | 10 + src/pe.h | 4 27 files changed, 436 insertions(+), 164 deletions(-)
Title: HTML Metadata Tags for 'R Markdown' and 'Shiny'
Description: Create meta tags for 'R Markdown' HTML documents and 'Shiny'
apps for customized social media cards, for accessibility, and quality
search engine indexing. 'metathis' currently supports HTML documents
created with 'rmarkdown', 'shiny', 'xaringan', 'pagedown', 'bookdown',
and 'flexdashboard'.
Author: Garrick Aden-Buie [aut, cre]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between metathis versions 1.1.2 dated 2022-08-11 and 1.1.3 dated 2023-03-12
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- NEWS.md | 6 +++++- R/google_scholar.R | 2 +- R/meta.R | 5 +++-- R/metathis-package.R | 2 +- R/viewport.R | 1 - README.md | 4 ++-- man/meta_google_scholar.Rd | 2 +- man/meta_viewport.Rd | 1 - 10 files changed, 26 insertions(+), 23 deletions(-)
Title: Non-Parametric Sampling with Parallel Monte Carlo
Description: An implementation of a non-parametric statistical model using a
parallelised Monte Carlo sampling scheme. The method implemented in this
package allows non-parametric inference to be regularized for small sample
sizes, while also being more accurate than approximations such as
variational Bayes. The concentration parameter is an effective sample size
parameter, determining the faith we have in the model versus the data. When
the concentration is low, the samples are close to the exact Bayesian
logistic regression method; when the concentration is high, the samples are
close to the simplified variational Bayes logistic regression. The method is
described in full in the paper Lyddon, Walker, and Holmes (2018),
"Nonparametric learning from Bayesian models with randomized objective
functions" <arXiv:1806.11544>.
Author: Simon Lyddon [aut],
Miguel Morin [aut],
James Robinson [aut, cre],
The Alan Turing Institute [cph]
Maintainer: James Robinson <james.em.robinson@gmail.com>
Diff between PosteriorBootstrap versions 0.1.1 dated 2021-05-14 and 0.1.2 dated 2023-03-12
DESCRIPTION | 18 MD5 | 14 NEWS.md | 13 README.md | 6 build/vignette.rds |binary inst/doc/PosteriorBootstrap.Rmd | 2 inst/doc/PosteriorBootstrap.html | 971 +++++++++++++++++++++++++-------------- vignettes/PosteriorBootstrap.Rmd | 2 8 files changed, 671 insertions(+), 355 deletions(-)
More information about PosteriorBootstrap at CRAN
Permanent link
Title: Choice Models with Economic Foundation
Description: Implements choice models based on economic theory, including estimation using Markov chain Monte Carlo (MCMC), prediction, and more. Its usability is inspired by ideas from 'tidyverse'. Models include versions of the Hierarchical Multinomial Logit and Multiple Discrete-Continous (Volumetric) models with and without screening. The foundations of these models are described in Allenby, Hardt and Rossi (2019) <doi:10.1016/bs.hem.2019.04.002>. Models with conjunctive screening are described in Kim, Hardt, Kim and Allenby (2022) <doi:10.1016/j.ijresmar.2022.04.001>. Models with set-size variation are described in Hardt and Kurz (2020) <doi:10.2139/ssrn.3418383>.
Author: Nino Hardt [aut, cre]
Maintainer: Nino Hardt <me@ninohardt.com>
Diff between echoice2 versions 0.2.1 dated 2023-02-04 and 0.2.3 dated 2023-03-12
DESCRIPTION | 11 - MD5 | 54 +++++-- NAMESPACE | 13 + R/echoice2.R | 267 +++++++++++++++++++++++++++++++++++- R/package.R | 7 build |only data/pizza.rdata |only inst/doc |only man/ec_dem_summarise.Rd | 3 man/ec_lol_tidy1.Rd |only man/ec_screen_summarise.Rd | 3 man/ec_summarize_attrlvls.Rd | 3 man/ec_undummy.Rd |only man/ec_undummy_lowhigh.Rd |only man/ec_undummy_lowmediumhigh.Rd |only man/ec_undummy_yesno.Rd |only man/ec_util_choice_to_long.Rd |only man/ec_util_dummy_mutualeclusive.Rd |only man/pizza.Rd |only man/vd_dem_summarise.Rd | 3 src/echoice2.cpp | 11 - src/myomp.h | 1 vignettes |only 23 files changed, 352 insertions(+), 24 deletions(-)
Title: Tools to Work with Survey Data
Description: Data obtained from surveys contains information not only about the
survey responses, but also the survey metadata, e.g. the original survey
questions and the answer options. The 'surveydata' package makes it easy to
keep track of this metadata, and to easily extract columns with
specific questions.
Author: Andrie de Vries [aut, cre, cph],
Evan Odell [ctb]
Maintainer: Andrie de Vries <apdevries@gmail.com>
Diff between surveydata versions 0.2.6 dated 2020-09-15 and 0.2.7 dated 2023-03-12
DESCRIPTION | 10 MD5 | 22 +- NEWS | 5 R/cleandata.R | 5 R/dplyr_verbs.R | 25 +- R/surveydata.R | 8 build/vignette.rds |binary inst/doc/surveydata.html | 339 +++++++++++++++++++------------ inst/vignette_child/child.Rmd | 2 inst/vignette_child/child.html | 380 ++++++++++++++++++++--------------- man/dplyr-surveydata.Rd | 4 tests/testthat/test-09-dplyr-verbs.R | 2 12 files changed, 482 insertions(+), 320 deletions(-)
Title: UK Flood Estimation
Description: Functions to implement the methods of the Flood Estimation Handbook (FEH), associated updates and the revitalised flood hydrograph model (ReFH). Currently the package uses NRFA peak flow dataset version 11.1. Aside from FEH functionality, further hydrological functions are available. Most of the methods implemented in this package are described in one or more of the following: "Flood Estimation Handbook", Centre for Ecology & Hydrology (1999, ISBN:0 948540 94 X). "Flood Estimation Handbook Supplementary Report No. 1", Kjeldsen (2007, ISBN:0 903741 15 7). "Regional Frequency Analysis - an approach based on L-moments", Hosking & Wallis (1997, ISBN: 978 0 521 01940 8). "Proposal of the extreme rank plot for extreme value analysis: with an emphasis on flood frequency studies", Hammond (2019, <doi:10.2166/nh.2019.157>). "Making better use of local data in flood frequency estimation", Environment Agency (2017, ISBN: 978 1 84911 387 8). "Sampling uncertainty of UK design flood e [...truncated...]
Author: Anthony Hammond
Maintainer: Anthony Hammond <agqhammond@gmail.com>
Diff between UKFE versions 0.2.7 dated 2023-02-03 and 0.2.8 dated 2023-03-12
UKFE-0.2.7/UKFE/man/DDF13.Rd |only UKFE-0.2.7/UKFE/man/DDF13Import.Rd |only UKFE-0.2.8/UKFE/DESCRIPTION | 8 - UKFE-0.2.8/UKFE/MD5 | 32 +++--- UKFE-0.2.8/UKFE/R/AMSP.R | 4 UKFE-0.2.8/UKFE/R/All.R | 182 +++++++++++++++++++++---------------- UKFE-0.2.8/UKFE/R/NRFAData.R | 4 UKFE-0.2.8/UKFE/R/QMEDData.R | 2 UKFE-0.2.8/UKFE/data/AMSP.rda |binary UKFE-0.2.8/UKFE/data/NRFAData.rda |binary UKFE-0.2.8/UKFE/data/QMEDData.rda |binary UKFE-0.2.8/UKFE/man/AMSP.Rd | 4 UKFE-0.2.8/UKFE/man/DDF.Rd |only UKFE-0.2.8/UKFE/man/DDFImport.Rd |only UKFE-0.2.8/UKFE/man/NRFAData.Rd | 4 UKFE-0.2.8/UKFE/man/Pool.Rd | 9 + UKFE-0.2.8/UKFE/man/PoolSmall.Rd | 9 + UKFE-0.2.8/UKFE/man/QMED.Rd | 2 UKFE-0.2.8/UKFE/man/QMEDData.Rd | 2 19 files changed, 149 insertions(+), 113 deletions(-)
Title: Simple Features for R
Description: Support for simple features, a standardized way to
encode spatial vector data. Binds to 'GDAL' for reading and writing
data, to 'GEOS' for geometrical operations, and to 'PROJ' for
projection conversions and datum transformations. Uses by default the 's2'
package for spherical geometry operations on ellipsoidal (long/lat) coordinates.
Author: Edzer Pebesma [aut, cre] ,
Roger Bivand [ctb] ,
Etienne Racine [ctb],
Michael Sumner [ctb],
Ian Cook [ctb],
Tim Keitt [ctb],
Robin Lovelace [ctb],
Hadley Wickham [ctb],
Jeroen Ooms [ctb] ,
Kirill Mueller [ctb],
Thomas Lin Pedersen [ctb],
Dan Baston [c [...truncated...]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between sf versions 1.0-9 dated 2022-11-08 and 1.0-10 dated 2023-03-12
DESCRIPTION | 19 +- MD5 | 216 +++++++++++++++--------------- NAMESPACE | 1 NEWS.md | 32 ++++ R/RcppExports.R | 64 ++++---- R/arith.R | 5 R/bind.R | 21 +- R/crs.R | 87 ++++++++---- R/gdal_utils.R | 30 ++-- R/geom-measures.R | 34 +--- R/geom-predicates.R | 4 R/geom-transformers.R | 23 +-- R/join.R | 4 R/make_grid.R | 16 +- R/maps.R | 2 R/plot.R | 9 - R/read.R | 22 ++- R/sample.R | 80 ++++++----- R/sf.R | 2 R/sfc.R | 25 ++- R/shift_longitude.R | 1 R/sp.R | 51 ++++++- R/spatstat.R | 23 +-- R/stars.R | 18 +- R/tidyverse.R | 14 + R/transform.R | 10 + R/wkt.R | 4 build/vignette.rds |binary configure | 12 - configure.ac | 12 - inst/CITATION | 12 + inst/doc/sf1.Rmd | 4 inst/doc/sf1.html | 43 +++-- inst/doc/sf2.html | 29 ++-- inst/doc/sf3.html | 13 + inst/doc/sf4.html | 65 +++++---- inst/doc/sf5.html | 24 ++- inst/doc/sf6.html | 13 + inst/doc/sf7.html | 21 +- inst/docker/gdal/Dockerfile | 12 - man/Ops.Rd | 5 man/gdal.Rd | 5 man/gdal_utils.Rd | 5 man/geos_measures.Rd | 4 man/geos_unary.Rd | 2 man/st_as_sfc.Rd | 2 man/st_as_text.Rd | 2 man/st_coordinates.Rd | 6 man/st_crs.Rd | 5 man/st_drivers.Rd | 7 man/st_join.Rd | 4 man/st_transform.Rd | 10 + man/st_write.Rd | 6 man/tidyverse.Rd | 39 +++-- src/Makevars.in | 2 src/Makevars.ucrt | 4 src/Makevars.win | 2 src/RcppExports.cpp | 148 ++++++++++++-------- src/gdal.cpp | 77 ++++++++++ src/gdal.h | 2 src/gdal_read.cpp | 2 src/gdal_utils.cpp | 89 ++++++++---- src/gdal_write.cpp | 75 ++++------ src/geos.cpp | 22 ++- src/hex.cpp | 1 src/stars.cpp | 37 ++++- src/zm_range.cpp | 25 ++- tests/aggregate.Rout.save | 6 tests/crs.Rout.save | 49 +----- tests/empty.Rout.save | 8 - tests/gdal_geom.Rout.save | 23 +-- tests/geos.Rout.save | 49 +++--- tests/maps.Rout.save | 6 tests/read.Rout.save | 31 ++-- tests/s2.R | 2 tests/s2.Rout.save | 7 tests/sfc.Rout.save | 63 ++++---- tests/spatstat.Rout.save | 36 ++--- tests/stars.Rout.save | 10 - tests/testthat/s2.R | 2 tests/testthat/test-grid.R | 24 +-- tests/testthat/test-normalize.R | 1 tests/testthat/test-shift_longitude.R | 2 tests/testthat/test_bbox.R | 2 tests/testthat/test_collection_extract.R | 32 ++-- tests/testthat/test_crs.R | 2 tests/testthat/test_gdal.R | 6 tests/testthat/test_geos.R | 39 ++--- tests/testthat/test_plot.R | 2 tests/testthat/test_postgis_ODBC.R | 3 tests/testthat/test_postgis_RPostgreSQL.R | 3 tests/testthat/test_postgis_RPostgres.R | 3 tests/testthat/test_project.R | 2 tests/testthat/test_read.R | 6 tests/testthat/test_sample.R | 3 tests/testthat/test_sf.R | 10 - tests/testthat/test_sfc.R | 2 tests/testthat/test_sfg.R | 2 tests/testthat/test_sp.R | 83 +++++++---- tests/testthat/test_st_cast.R | 92 ++++++------ tests/testthat/test_tidy.R | 94 +++++++------ tests/testthat/test_tm.R | 66 ++++----- tests/testthat/test_vctrs.R | 6 tests/testthat/test_wkb.R | 2 tests/testthat/test_wkt.R | 2 tests/testthat/test_write.R | 22 +-- tests/units.R | 7 tests/units.Rout.save | 19 +- vignettes/sf1.Rmd | 4 109 files changed, 1468 insertions(+), 1030 deletions(-)
Title: Testing Workbench for Precision-Recall Curves
Description: A testing workbench to evaluate tools that calculate precision-recall curves.
Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] ,
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between prcbench versions 1.1.1 dated 2022-08-23 and 1.1.8 dated 2023-03-12
DESCRIPTION | 21 - MD5 | 98 ++--- NAMESPACE | 1 NEWS.md | 16 R/data_interface.R | 76 ++-- R/data_zzz.R | 22 - R/g_autoplot.R | 212 +++++++++--- R/g_print.R | 14 R/main_benchmark.R | 12 R/main_evalcurves.R | 117 +++--- R/prcbench.R | 3 R/tool_interface.R | 122 ++++--- R/tool_java.R | 2 R/tool_perfmeas.R | 43 +- R/tool_rlib.R | 10 R/tool_zzz.R | 129 +++++-- README.md | 236 +++++++------ build/vignette.rds |binary inst/CITATION | 11 inst/doc/introduction.R | 83 ++-- inst/doc/introduction.Rmd | 206 +++++++---- inst/doc/introduction.html | 585 +++++++++++++++++++--------------- man/ToolIFBase.Rd | 13 man/ToolPRROC.Rd | 6 man/autoplot.Rd | 7 man/create_testset.Rd | 3 man/create_toolset.Rd | 18 - man/create_usrdata.Rd | 12 man/figures/logo.png |binary man/figures/logo.svg | 325 ++++++++++++------ man/prcbench.Rd | 3 src/perfmeas.cpp | 15 tests/testthat.R | 2 tests/testthat/Rplots.pdf |only tests/testthat/setup.R |only tests/testthat/test_data_bench.R | 8 tests/testthat/test_data_curve.R | 22 - tests/testthat/test_data_testdata.R | 10 tests/testthat/test_data_userd.R | 258 +++++++++----- tests/testthat/test_main_benchmark.R | 169 ++++++--- tests/testthat/test_main_evalcurves.R | 100 +++-- tests/testthat/test_plot_autoplot.R | 184 ++++++++-- tests/testthat/test_print.R | 20 - tests/testthat/test_tool_auccalc.R | 33 + tests/testthat/test_tool_base.R | 36 ++ tests/testthat/test_tool_pm.R | 6 tests/testthat/test_tool_precrec.R | 20 + tests/testthat/test_tool_prroc.R | 17 tests/testthat/test_tool_tools.R | 53 +-- tests/testthat/test_tool_userd.R | 72 ++-- vignettes/introduction.Rmd | 206 +++++++---- 51 files changed, 2296 insertions(+), 1341 deletions(-)
Title: Report Crypto Taxes (Canada Only)
Description: Helps calculate crypto taxes in R. First, by allowing
you to format .CSV files from various exchanges to one
large data frame of organized transactions. Second, by allowing you to
calculate your Adjusted Cost Base (ACB), ACB per share, and
realized and unrealized capital gains/losses. Third, by calculating
revenues gained from staking, interest, airdrops, etc. Fourth, by
calculating superficial losses as well. *Disclaimer: This is not financial advice.
Use at your own risks. There are no guarantees whatsoever in relation
to the use of this package. Please consult a tax professional as necessary*.
Author: Steve Wong [aut, cre]
Maintainer: Steve Wong <mr.cryptoltruist@gmail.com>
Diff between cryptoTax versions 0.0.4 dated 2023-03-08 and 0.0.5 dated 2023-03-12
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS.md | 4 ++ R/prepare_list_prices.R | 12 ++++++-- inst/doc/report.html | 72 ++++++++++++++++++++++++------------------------ 5 files changed, 56 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-08-11 0.1.1
2018-08-06 0.1.0
Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing
framework for R that is easy to learn and use, and integrates with
your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
R Core team [ctb] )
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 3.1.6 dated 2022-12-09 and 3.1.7 dated 2023-03-12
DESCRIPTION | 8 +-- MD5 | 53 +++++++++++++----------- NAMESPACE | 3 + NEWS.md | 9 ++++ R/expect-setequal.R | 43 +++++++++---------- R/expectation.R | 2 R/mock.R | 1 R/mock2.R |only R/skip.R | 2 R/snapshot.R | 4 - inst/CITATION | 16 +------ inst/doc/custom-expectation.html | 2 inst/doc/skipping.html | 2 inst/doc/snapshotting.html | 18 ++++---- inst/doc/third-edition.html | 12 ++++- man/local_mocked_bindings.Rd |only man/skip.Rd | 2 man/with_mock.Rd | 3 - tests/testthat/_snaps/expect-setequal.md |only tests/testthat/_snaps/mock2.md |only tests/testthat/_snaps/reporter-check.md | 22 ++++----- tests/testthat/_snaps/reporter-junit.md | 14 +++--- tests/testthat/_snaps/reporter-location.md | 18 ++++---- tests/testthat/_snaps/reporter-progress.md | 64 ++++++++++++++--------------- tests/testthat/_snaps/reporter-rstudio.md | 16 +++---- tests/testthat/_snaps/reporter-stop.md | 16 +++---- tests/testthat/_snaps/reporter-summary.md | 44 +++++++++---------- tests/testthat/test-expect-setequal.R | 10 ++++ tests/testthat/test-mock2.R |only tests/testthat/test-snapshot-reporter.R | 4 + 30 files changed, 205 insertions(+), 183 deletions(-)
Title: Modeling Count Data with Peer Effects
Description: Likelihood-based estimation and data generation from a class of models used to estimate peer effects on count data by controlling for the network endogeneity. This class includes count data models with social interactions (Houndetoungan 2022; <doi:10.2139/ssrn.3721250>), spatial tobit models (Xu and Lee 2015; <doi:10.1016/j.jeconom.2015.05.004>), and spatial linear-in-means models (Lee 2004; <doi:10.1111/j.1468-0262.2004.00558.x>).
Author: Elysee Aristide Houndetoungan [cre, aut]
Maintainer: Elysee Aristide Houndetoungan <ariel92and@gmail.com>
Diff between CDatanet versions 2.0.3 dated 2022-11-16 and 2.1.0 dated 2023-03-12
DESCRIPTION | 10 +++--- MD5 | 24 +++++++-------- NEWS.md | 5 ++- R/CDnetestim.R | 21 ++++++++----- build/partial.rdb |binary man/cdnet.Rd | 9 ++--- src/CDincomInfo.cpp | 55 +++++++++++++---------------------- src/CDincomInfo.rho.cpp | 75 ++++++++++++++++++++++++++---------------------- src/Homophily.cpp | 2 - src/Makevars | 2 - src/Makevars.win | 2 - src/RcppExports.cpp | 1 src/SARTIncomplet.cpp | 2 - 13 files changed, 105 insertions(+), 103 deletions(-)
Title: A Toolkit for Behavioral Scientists
Description: A collection of functions for analyzing data typically collected
or used by behavioral scientists. Examples of the functions include
a function that compares groups in a factorial experimental design,
a function that conducts two-way analysis of variance (ANOVA),
and a function that cleans a data set generated by Qualtrics surveys.
Some of the functions will require installing additional package(s).
Such packages and other references are cited within the section
describing the relevant functions. Many functions in this package
rely heavily on these two popular R packages:
Dowle et al. (2021) <https://CRAN.R-project.org/package=data.table>.
Wickham et al. (2021) <https://CRAN.R-project.org/package=ggplot2>.
Author: Jin Kim [aut, cre]
Maintainer: Jin Kim <jin.m.kim@yale.edu>
Diff between kim versions 0.5.55 dated 2022-07-08 and 0.5.212 dated 2023-03-12
DESCRIPTION | 13 MD5 | 163 ++++---- NAMESPACE | 15 NEWS.md | 46 ++ R/akaike_weights.R | 3 R/chi_squared_test.R |only R/chi_squared_test_pairwise.R | 7 R/cohen_d_borenstein.R | 8 R/cohen_d_to_r.R |only R/compare_dependent_rs.R | 87 ++-- R/compare_groups.R | 10 R/contingency_table.R |only R/desc_stats.R | 59 ++ R/floodlight_2_by_continuous.R | 33 - R/forest_plot.R | 13 R/geomean.R |only R/histogram.R | 201 +++++---- R/histogram_deprecated_1.R |only R/histogram_from_hist.R |only R/kurtosis.R | 2 R/log_odds_ratio.R |only R/log_odds_ratio_to_d.R |only R/mad_remove_outliers.R |only R/noncentrality_parameter.R | 2 R/odds_ratio.R |only R/parallel_analysis.R | 224 +++++++---- R/score_scale_items.R | 15 R/spotlight_2_by_continuous.R | 191 +++++++-- R/standardize.R |only R/tau_squared.R |only R/und.R | 46 +- R/var_of_log_odds_ratio_to_var_of_d.R |only R/weighted_mean_effect_size.R |only R/weighted_mean_r.R | 4 R/z_score.R |only README.md | 2 build/partial.rdb |binary inst/CITATION | 21 - man/akaike_weights.Rd | 59 +- man/bracket.Rd | 152 +++---- man/check_modes.Rd | 50 +- man/chi_squared_test.Rd |only man/chi_squared_test_pairwise.Rd | 162 ++++---- man/cohen_d_borenstein.Rd | 144 +++---- man/cohen_d_over_n.Rd | 134 +++--- man/cohen_d_to_r.Rd |only man/cohen_d_torchiano.Rd | 86 ++-- man/compare_dependent_rs.Rd | 142 +++---- man/compare_effect_sizes.Rd | 96 ++-- man/compare_groups.Rd | 10 man/compare_independent_rs.Rd | 132 +++--- man/contingency_table.Rd |only man/convert_cols_to_numeric.Rd | 90 ++-- man/convert_to_excel_formula.Rd | 64 +-- man/desc_stats.Rd | 31 + man/duplicated_values.Rd | 84 ++-- man/exit_from_parent_function.Rd | 70 +-- man/fisher_z_transform.Rd | 44 +- man/floodlight_2_by_continuous.Rd | 14 man/forest_plot.Rd | 302 +++++++------- man/geomean.Rd |only man/histogram.Rd | 74 ++- man/histogram_deprecated_1.Rd |only man/histogram_from_hist.Rd |only man/identical_all.Rd | 60 +- man/kurtosis.Rd | 2 man/log_odds_ratio.Rd |only man/log_odds_ratio_to_d.Rd |only man/logistic_regression.Rd | 206 +++++----- man/loglinear_analysis.Rd | 120 ++--- man/mad_remove_outliers.Rd |only man/modes_of_objects.Rd | 42 +- man/noncentrality_parameter.Rd | 54 +- man/odds_ratio.Rd |only man/overlapping_interval.Rd | 80 +-- man/p0.Rd | 60 +- man/parallel_analysis.Rd | 50 ++ man/pretty_round_r.Rd | 50 +- man/q_stat_test_homo_r.Rd | 54 +- man/remove_from_vector.Rd | 60 +- man/repeated_measures_anova.Rd | 132 +++--- man/replace_values_in_dt.Rd | 74 +-- man/score_scale_items.Rd | 6 man/simple_effects_analysis.Rd | 126 +++--- man/spotlight_2_by_continuous.Rd | 627 +++++++++++++++---------------- man/standardize.Rd |only man/standardized_regression.Rd | 140 +++--- man/tau_squared.Rd |only man/tv.Rd | 162 ++++---- man/und.Rd | 69 +-- man/var_of_log_odds_ratio_to_var_of_d.Rd |only man/vlookup.Rd | 70 +-- man/weighted_mean_effect_size.Rd |only man/weighted_mean_r.Rd | 82 ++-- man/weighted_z.Rd | 52 +- man/z_score.Rd |only man/z_to_r_transform.Rd | 46 +- tests |only 98 files changed, 2994 insertions(+), 2535 deletions(-)
Title: Hypothesis Testing Tree
Description: A novel decision tree algorithm in the hypothesis testing framework. The algorithm examines the distribution difference between two child nodes over all possible binary partitions. The test statistic of the hypothesis testing is equivalent to the generalized energy distance, which enables the algorithm to be more powerful in detecting the complex structure, not only the mean difference. It is applicable for numeric, nominal, ordinal explanatory variables and the response in general metric space of strong negative type. The algorithm has superior performance compared to other tree models in type I error, power, prediction accuracy, and complexity.
Author: Jiaqi Hu [cre, aut],
Zhe Gao [aut],
Bo Zhang [aut],
Xueqin Wang [aut]
Maintainer: Jiaqi Hu <hujiaqi@mail.ustc.edu.cn>
Diff between HTT versions 0.1.1 dated 2022-12-09 and 0.1.2 dated 2023-03-12
HTT-0.1.1/HTT/README.md |only HTT-0.1.2/HTT/DESCRIPTION | 10 +- HTT-0.1.2/HTT/MD5 | 41 +++++----- HTT-0.1.2/HTT/NAMESPACE | 1 HTT-0.1.2/HTT/NEWS.md | 3 HTT-0.1.2/HTT/R/HTT.R | 84 ++++++++------------- HTT-0.1.2/HTT/R/RcppExports.R | 4 - HTT-0.1.2/HTT/R/htt_control.R | 1 HTT-0.1.2/HTT/build/vignette.rds |binary HTT-0.1.2/HTT/inst/doc/Intro.R | 17 ++-- HTT-0.1.2/HTT/inst/doc/Intro.Rmd | 17 ++-- HTT-0.1.2/HTT/inst/doc/Intro.html | 149 ++++++++++++++++++-------------------- HTT-0.1.2/HTT/man/ENB.Rd | 13 +-- HTT-0.1.2/HTT/man/HTT.Rd | 15 ++- HTT-0.1.2/HTT/man/plot.htt.Rd | 10 +- HTT-0.1.2/HTT/man/predict.htt.Rd | 8 +- HTT-0.1.2/HTT/man/print.htt.Rd | 4 - HTT-0.1.2/HTT/man/printsplit.Rd | 4 - HTT-0.1.2/HTT/src/Convenience.cpp | 2 HTT-0.1.2/HTT/src/Convenience.h | 2 HTT-0.1.2/HTT/src/RcppExports.cpp | 10 +- HTT-0.1.2/HTT/vignettes/Intro.Rmd | 17 ++-- 22 files changed, 197 insertions(+), 215 deletions(-)
Title: 'AWS Python SDK' ('boto3') for R
Description: Fork-safe, raw access to the 'Amazon Web Services' ('AWS') 'SDK' via the 'boto3' 'Python' module, and convenient helper functions to query the 'Simple Storage Service' ('S3') and 'Key Management Service' ('KMS'), partial support for 'IAM', the 'Systems Manager Parameter Store' and 'Secrets Manager'.
Author: Gergely Daroczi [aut, cre] ,
System1 [fnd]
Maintainer: Gergely Daroczi <daroczig@rapporter.net>
Diff between botor versions 0.3.0 dated 2020-02-16 and 0.4.0 dated 2023-03-12
DESCRIPTION | 14 +++++++------- MD5 | 34 +++++++++++++++++++--------------- NAMESPACE | 4 ++++ NEWS.md | 8 ++++++++ R/kinesis.R | 8 ++++---- R/s3.R | 3 ++- R/sm.R |only R/utils.R | 14 +++++++++++++- R/zzz.R | 1 - README.md | 12 ++++++------ man/boto3.Rd | 4 +++- man/botor.Rd | 10 ++++++++-- man/botor_client.Rd | 3 +-- man/botor_session.Rd | 4 +++- man/clients.Rd | 4 +++- man/kinesis_get_records.Rd | 4 +++- man/kinesis_get_shard_iterator.Rd | 8 ++++++-- man/python_version.Rd |only man/sm.Rd |only man/sm_get_secret.Rd |only 20 files changed, 90 insertions(+), 45 deletions(-)
Title: Select Intervals Suited for Functional Regression
Description: Interval fusion and selection procedures for regression with
functional inputs. Methods include a semiparametric approach based
on Sliced Inverse Regression (SIR), as described in
<doi:10.1007/s11222-018-9806-6> (standard ridge and sparse SIR are
also included in the package) and a random forest based approach.
Author: Victor Picheny [aut],
Remi Servien [aut],
Nathalie Vialaneix [aut, cre]
Maintainer: Nathalie Vialaneix <nathalie.vialaneix@inrae.fr>
Diff between SISIR versions 0.2.0 dated 2022-10-28 and 0.2.1 dated 2023-03-12
DESCRIPTION | 21 ++++++++++++--------- MD5 | 29 ++++++++++++++++------------- NAMESPACE | 19 +++++++++++++++++++ NEWS.md | 13 +++++++++++++ R/SFCB.R | 8 ++++++-- R/group_methods.R | 2 ++ R/helpers_sfcb.R | 2 +- R/plot_functions.R |only R/ridgeSIR.R | 6 ++++-- R/sfcb_methods.R |only R/sparseSIR.R | 2 +- inst/CITATION | 41 +++++++++++++++++++---------------------- man/SFCB-class.Rd |only man/ridgeRes.Rd | 1 - man/ridgeSIR.Rd | 2 +- man/sfcb.Rd | 8 ++++++-- man/sparseSIR.Rd | 2 +- 17 files changed, 101 insertions(+), 55 deletions(-)
Title: Add Standardized Regression Coefficients to Linear-Model-Objects
Description: Adds standardized regression coefficients to objects created by 'lm'. Also extends the S3 methods 'print', 'summary' and 'coef' with additional boolean argument 'standardized' and provides 'xtable'-support.
Author: Stefan Behrendt [aut, cre]
Maintainer: Stefan Behrendt <r@behrendt-stefan.de>
Diff between lm.beta versions 1.7-1 dated 2023-01-09 and 1.7-2 dated 2023-03-12
DESCRIPTION | 12 +++---- MD5 | 14 ++++---- NEWS | 5 +++ R/xtable.lm.beta.R | 4 +- inst/doc/comparison.pdf |binary inst/doc/implementation.pdf |binary man/lm.beta-package.Rd | 9 +++-- man/xtable.lm.beta.Rd | 73 ++++++-------------------------------------- 8 files changed, 35 insertions(+), 82 deletions(-)
Title: Computing Variances and Covariances, Visualization and Missing
Data Solution for Multivariate Meta-Analysis
Description: Collection of functions to compute within-study covariances for different effect sizes, data visualization, and single and multiple imputations for missing data. Effect sizes include correlation (r), mean difference (MD), standardized mean difference (SMD), log odds ratio (logOR), log risk ratio (logRR), and risk difference (RD).
Author: Min Lu <m.lu6@umiami.edu>
Maintainer: Min Lu <m.lu6@umiami.edu>
Diff between metavcov versions 2.1.2 dated 2021-10-25 and 2.1.4 dated 2023-03-12
DESCRIPTION | 11 ++++++----- MD5 | 26 +++++++++++++------------- R/metami.R | 16 +++++++++++++++- inst/CITATION | 23 ++++++++++++++--------- inst/NEWS | 13 +++++++++++++ man/lgOR.vcov.Rd | 8 ++++---- man/lgRR.vcov.Rd | 6 +++--- man/md.vcov.Rd | 8 ++++---- man/metami.Rd | 22 +++++++++++----------- man/metavcov-package.Rd | 14 +++++++------- man/mix.vcov.Rd | 8 ++++---- man/r.vcov.Rd | 8 ++++---- man/rd.vcov.Rd | 6 +++--- man/smd.vcov.Rd | 8 ++++---- 14 files changed, 105 insertions(+), 72 deletions(-)
Title: Fetch Zonal Statistics of Weather Indicators for Brazilian
Municipalities
Description: Fetches zonal statistics from weather indicators that were calculated for each municipality in Brazil using data from the BR-DWGD and TerraClimate projects.
Zonal statistics such as mean, maximum, minimum, standard deviation, and sum were computed by taking into account the data cells that intersect the boundaries of each municipality and stored in Parquet files. This procedure was carried out for all Brazilian municipalities, and for all available dates, for every indicator available in the weather products (BR-DWGD and TerraClimate projects). This package queries on-line the already calculated statistics on the Parquet files and returns easy-to-use data.frames.
Author: Raphael Saldanha [aut, cre] ,
Reza Akbarinia [aut],
Patrick Valduriez [aut],
Marcel Pedroso [aut],
Victor Ribeiro [aut],
Carlos Cardoso [aut],
Eduardo Pena [aut],
Fabio Porto [aut]
Maintainer: Raphael Saldanha <raphael.de-freitas-saldanha@inria.fr>
Diff between brclimr versions 0.1.0 dated 2023-03-07 and 0.1.1 dated 2023-03-12
brclimr-0.1.0/brclimr/R/create_report.R |only brclimr-0.1.0/brclimr/man/create_report.Rd |only brclimr-0.1.1/brclimr/DESCRIPTION | 31 ++++-- brclimr-0.1.1/brclimr/MD5 | 25 ++--- brclimr-0.1.1/brclimr/NAMESPACE | 6 - brclimr-0.1.1/brclimr/NEWS.md | 6 + brclimr-0.1.1/brclimr/R/fetch_data.R | 48 +++++----- brclimr-0.1.1/brclimr/R/utils-pipe.R |only brclimr-0.1.1/brclimr/README.md | 41 ++++++-- brclimr-0.1.1/brclimr/data/brdwgd_data.rda |binary brclimr-0.1.1/brclimr/data/terraclimate_data.rda |binary brclimr-0.1.1/brclimr/man/figures/README-unnamed-chunk-6-1.png |binary brclimr-0.1.1/brclimr/man/figures/README-unnamed-chunk-7-1.png |only brclimr-0.1.1/brclimr/man/figures/README-unnamed-chunk-8-1.png |only brclimr-0.1.1/brclimr/man/figures/README-unnamed-chunk-9-1.png |only brclimr-0.1.1/brclimr/man/pipe.Rd |only brclimr-0.1.1/brclimr/tests/testthat/test-fetch_data.R | 4 17 files changed, 103 insertions(+), 58 deletions(-)
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)
data analysis and to work with microbial and antimicrobial properties by
using evidence-based methods, as described in <doi:10.18637/jss.v104.i03>.
Author: Matthijs S. Berends [aut, cre]
,
Christian F. Luz [aut, ctb] ,
Dennis Souverein [aut, ctb] ,
Erwin E. A. Hassing [aut, ctb],
Casper J. Albers [ths] ,
Peter Dutey-Magni [ctb] ,
Judith M. Fonville [ctb],
Alex W. Friedrich [ths] ,
Corinna Glasner [ths] [...truncated...]
Maintainer: Matthijs S. Berends <m.berends@certe.nl>
Diff between AMR versions 1.8.2 dated 2022-09-29 and 2.0.0 dated 2023-03-12
AMR-1.8.2/AMR/R/amr.R |only AMR-1.8.2/AMR/R/catalogue_of_life.R |only AMR-1.8.2/AMR/R/deprecated.R |only AMR-1.8.2/AMR/R/episode.R |only AMR-1.8.2/AMR/R/ggplot_rsi.R |only AMR-1.8.2/AMR/R/lifecycle.R |only AMR-1.8.2/AMR/R/rsi.R |only AMR-1.8.2/AMR/R/rsi_calc.R |only AMR-1.8.2/AMR/R/rsi_df.R |only AMR-1.8.2/AMR/data/microorganisms.old.rda |only AMR-1.8.2/AMR/data/rsi_translation.rda |only AMR-1.8.2/AMR/inst/tinytest |only AMR-1.8.2/AMR/man/as.rsi.Rd |only AMR-1.8.2/AMR/man/catalogue_of_life.Rd |only AMR-1.8.2/AMR/man/catalogue_of_life_version.Rd |only AMR-1.8.2/AMR/man/figures/lifecycle_archived.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_dormant.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_experimental.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_maturing.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_questioning.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_retired.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_stable.svg |only AMR-1.8.2/AMR/man/figures/lifecycle_tidyverse.svg |only AMR-1.8.2/AMR/man/figures/logo.png |only AMR-1.8.2/AMR/man/figures/logo_certe.png |only AMR-1.8.2/AMR/man/figures/logo_col.png |only AMR-1.8.2/AMR/man/figures/logo_eh1h.png |only AMR-1.8.2/AMR/man/figures/logo_interreg.png |only AMR-1.8.2/AMR/man/figures/logo_rug.png |only AMR-1.8.2/AMR/man/figures/logo_umcg.png |only AMR-1.8.2/AMR/man/figures/logo_who.png |only AMR-1.8.2/AMR/man/ggplot_rsi.Rd |only AMR-1.8.2/AMR/man/lifecycle.Rd |only AMR-1.8.2/AMR/man/microorganisms.old.Rd |only AMR-1.8.2/AMR/man/rsi_translation.Rd |only AMR-2.0.0/AMR/DESCRIPTION | 108 AMR-2.0.0/AMR/MD5 | 315 -- AMR-2.0.0/AMR/NAMESPACE | 81 AMR-2.0.0/AMR/NEWS.md | 1559 +---------- AMR-2.0.0/AMR/R/aa_amr-package.R |only AMR-2.0.0/AMR/R/aa_globals.R | 262 + AMR-2.0.0/AMR/R/aa_helper_functions.R | 1277 +++++---- AMR-2.0.0/AMR/R/aa_helper_pm_functions.R | 95 AMR-2.0.0/AMR/R/aa_options.R |only AMR-2.0.0/AMR/R/ab.R | 403 +- AMR-2.0.0/AMR/R/ab_from_text.R | 162 - AMR-2.0.0/AMR/R/ab_property.R | 356 +- AMR-2.0.0/AMR/R/ab_selectors.R | 878 ++++-- AMR-2.0.0/AMR/R/age.R | 105 AMR-2.0.0/AMR/R/antibiogram.R |only AMR-2.0.0/AMR/R/atc_online.R | 85 AMR-2.0.0/AMR/R/av.R |only AMR-2.0.0/AMR/R/av_from_text.R |only AMR-2.0.0/AMR/R/av_property.R |only AMR-2.0.0/AMR/R/availability.R | 76 AMR-2.0.0/AMR/R/bug_drug_combinations.R | 296 +- AMR-2.0.0/AMR/R/count.R | 205 - AMR-2.0.0/AMR/R/custom_antimicrobials.R |only AMR-2.0.0/AMR/R/custom_eucast_rules.R | 247 + AMR-2.0.0/AMR/R/custom_microorganisms.R |only AMR-2.0.0/AMR/R/data.R | 299 +- AMR-2.0.0/AMR/R/disk.R | 143 - AMR-2.0.0/AMR/R/eucast_rules.R | 1085 ++++--- AMR-2.0.0/AMR/R/first_isolate.R | 546 ++- AMR-2.0.0/AMR/R/g.test.R | 127 AMR-2.0.0/AMR/R/get_episode.R |only AMR-2.0.0/AMR/R/ggplot_pca.R | 335 +- AMR-2.0.0/AMR/R/ggplot_sir.R |only AMR-2.0.0/AMR/R/guess_ab_col.R | 282 +- AMR-2.0.0/AMR/R/italicise_taxonomy.R | 162 - AMR-2.0.0/AMR/R/join_microorganisms.R | 95 AMR-2.0.0/AMR/R/key_antimicrobials.R | 282 +- AMR-2.0.0/AMR/R/kurtosis.R | 23 AMR-2.0.0/AMR/R/like.R | 68 AMR-2.0.0/AMR/R/mdro.R | 2107 ++++++++------- AMR-2.0.0/AMR/R/mean_amr_distance.R |only AMR-2.0.0/AMR/R/mic.R | 227 + AMR-2.0.0/AMR/R/mo.R | 2597 +++++-------------- AMR-2.0.0/AMR/R/mo_matching_score.R | 131 AMR-2.0.0/AMR/R/mo_property.R | 921 ++++-- AMR-2.0.0/AMR/R/mo_source.R | 212 - AMR-2.0.0/AMR/R/pca.R | 98 AMR-2.0.0/AMR/R/plot.R | 792 +++-- AMR-2.0.0/AMR/R/proportion.R | 394 +- AMR-2.0.0/AMR/R/random.R | 104 AMR-2.0.0/AMR/R/resistance_predict.R | 307 +- AMR-2.0.0/AMR/R/sir.R |only AMR-2.0.0/AMR/R/sir_calc.R |only AMR-2.0.0/AMR/R/sir_df.R |only AMR-2.0.0/AMR/R/skewness.R | 24 AMR-2.0.0/AMR/R/sysdata.rda |binary AMR-2.0.0/AMR/R/translate.R | 353 +- AMR-2.0.0/AMR/R/vctrs.R | 103 AMR-2.0.0/AMR/R/whocc.R | 23 AMR-2.0.0/AMR/R/zz_deprecated.R |only AMR-2.0.0/AMR/R/zzz.R | 258 + AMR-2.0.0/AMR/README.md | 40 AMR-2.0.0/AMR/build/partial.rdb |binary AMR-2.0.0/AMR/build/vignette.rds |binary AMR-2.0.0/AMR/data/WHONET.rda |binary AMR-2.0.0/AMR/data/antibiotics.rda |binary AMR-2.0.0/AMR/data/antivirals.rda |binary AMR-2.0.0/AMR/data/clinical_breakpoints.rda |only AMR-2.0.0/AMR/data/dosage.rda |binary AMR-2.0.0/AMR/data/example_isolates.rda |binary AMR-2.0.0/AMR/data/example_isolates_unclean.rda |binary AMR-2.0.0/AMR/data/intrinsic_resistant.rda |binary AMR-2.0.0/AMR/data/microorganisms.codes.rda |binary AMR-2.0.0/AMR/data/microorganisms.rda |binary AMR-2.0.0/AMR/inst/doc/welcome_to_AMR.R | 2 AMR-2.0.0/AMR/inst/doc/welcome_to_AMR.Rmd | 26 AMR-2.0.0/AMR/inst/doc/welcome_to_AMR.html | 91 AMR-2.0.0/AMR/man/AMR-deprecated.Rd | 59 AMR-2.0.0/AMR/man/AMR-options.Rd |only AMR-2.0.0/AMR/man/AMR.Rd | 110 AMR-2.0.0/AMR/man/WHOCC.Rd | 6 AMR-2.0.0/AMR/man/WHONET.Rd | 20 AMR-2.0.0/AMR/man/ab_from_text.Rd | 61 AMR-2.0.0/AMR/man/ab_property.Rd | 86 AMR-2.0.0/AMR/man/add_custom_antimicrobials.Rd |only AMR-2.0.0/AMR/man/add_custom_microorganisms.Rd |only AMR-2.0.0/AMR/man/age.Rd | 26 AMR-2.0.0/AMR/man/age_groups.Rd | 28 AMR-2.0.0/AMR/man/antibiogram.Rd |only AMR-2.0.0/AMR/man/antibiotic_class_selectors.Rd | 287 +- AMR-2.0.0/AMR/man/antibiotics.Rd | 53 AMR-2.0.0/AMR/man/as.ab.Rd | 45 AMR-2.0.0/AMR/man/as.av.Rd |only AMR-2.0.0/AMR/man/as.disk.Rd | 60 AMR-2.0.0/AMR/man/as.mic.Rd | 82 AMR-2.0.0/AMR/man/as.mo.Rd | 214 - AMR-2.0.0/AMR/man/as.sir.Rd |only AMR-2.0.0/AMR/man/atc_online.Rd | 17 AMR-2.0.0/AMR/man/av_from_text.Rd |only AMR-2.0.0/AMR/man/av_property.Rd |only AMR-2.0.0/AMR/man/availability.Rd | 19 AMR-2.0.0/AMR/man/bug_drug_combinations.Rd | 54 AMR-2.0.0/AMR/man/clinical_breakpoints.Rd |only AMR-2.0.0/AMR/man/count.Rd | 127 AMR-2.0.0/AMR/man/custom_eucast_rules.Rd | 160 - AMR-2.0.0/AMR/man/dosage.Rd | 23 AMR-2.0.0/AMR/man/eucast_rules.Rd | 109 AMR-2.0.0/AMR/man/example_isolates.Rd | 37 AMR-2.0.0/AMR/man/example_isolates_unclean.Rd | 20 AMR-2.0.0/AMR/man/first_isolate.Rd | 81 AMR-2.0.0/AMR/man/g.test.Rd | 24 AMR-2.0.0/AMR/man/get_episode.Rd | 209 + AMR-2.0.0/AMR/man/ggplot_pca.Rd | 45 AMR-2.0.0/AMR/man/ggplot_sir.Rd |only AMR-2.0.0/AMR/man/guess_ab_col.Rd | 43 AMR-2.0.0/AMR/man/intrinsic_resistant.Rd | 27 AMR-2.0.0/AMR/man/italicise_taxonomy.Rd | 25 AMR-2.0.0/AMR/man/join.Rd | 42 AMR-2.0.0/AMR/man/key_antimicrobials.Rd | 51 AMR-2.0.0/AMR/man/kurtosis.Rd | 15 AMR-2.0.0/AMR/man/like.Rd | 27 AMR-2.0.0/AMR/man/mdro.Rd | 105 AMR-2.0.0/AMR/man/mean_amr_distance.Rd |only AMR-2.0.0/AMR/man/microorganisms.Rd | 104 AMR-2.0.0/AMR/man/microorganisms.codes.Rd | 26 AMR-2.0.0/AMR/man/mo_matching_score.Rd | 63 AMR-2.0.0/AMR/man/mo_property.Rd | 538 ++- AMR-2.0.0/AMR/man/mo_source.Rd | 89 AMR-2.0.0/AMR/man/pca.Rd | 47 AMR-2.0.0/AMR/man/plot.Rd | 99 AMR-2.0.0/AMR/man/proportion.Rd | 243 + AMR-2.0.0/AMR/man/random.Rd | 49 AMR-2.0.0/AMR/man/resistance_predict.Rd | 90 AMR-2.0.0/AMR/man/skewness.Rd | 14 AMR-2.0.0/AMR/man/translate.Rd | 113 AMR-2.0.0/AMR/tests/tinytest.R | 69 AMR-2.0.0/AMR/vignettes/welcome_to_AMR.Rmd | 26 172 files changed, 11327 insertions(+), 11407 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-13 1.2.5
2021-02-10 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-07 2.5.4
2022-05-03 2.5.3
2021-04-27 2.5.2
2019-04-19 2.5.0-142
2018-05-30 2.5.0-141
2016-05-10 2.5.0-137
2016-05-03 2.5.0-136
2014-07-21 2.5.0-135
2014-02-02 2.0.0-117
2014-01-30 2.0.0-116
2013-07-10 1.5.0-72
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-30 0.2.6
2017-02-23 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-07 1.5.5
2022-05-04 1.5.4
2021-04-30 1.5.2
2018-05-29 1.5.0-75
2016-05-03 1.5.0-74
2013-09-10 1.5.0-73
2013-07-10 1.5.0-72
Title: Geometrical Functionality of the 'spatstat' Family
Description: Defines spatial data types and supports geometrical operations
on them. Data types include point patterns, windows (domains),
pixel images, line segment patterns, tessellations and hyperframes.
Capabilities include creation and manipulation of data
(using command line or graphical interaction),
plotting, geometrical operations (rotation, shift, rescale,
affine transformation), convex hull, discretisation and
pixellation, Dirichlet tessellation, Delaunay triangulation,
pairwise distances, nearest-neighbour distances,
distance transform, morphological operations
(erosion, dilation, closing, opening), quadrat counting,
geometrical measurement, geometrical covariance,
colour maps, calculus on spatial domains,
Gaussian blur, level sets of images, transects of images,
intersections between objects, minimum distance matching.
(Excludes spatial data on a network, which are supported by
the package 'spatstat.linnet'.)
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Tilman Davies [ctb],
Ute Hahn [ctb],
Abdollah Jalilian [ctb],
Greg McSwiggan [ctb, cph],
Sebastian Meyer [ctb, cph],
Jens Oehlschlaegel [ctb, cph],
Suman Rakshit [ctb], [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.geom versions 3.0-6 dated 2023-01-30 and 3.1-0 dated 2023-03-12
DESCRIPTION | 13 +- MD5 | 54 +++++---- NAMESPACE | 14 ++ NEWS | 59 ++++++++++ R/aaa.R | 8 - R/breakpts.R | 4 R/colourschemes.R | 40 ++++++ R/colourtables.R | 84 ++++++++++++++ R/funxy.R | 6 - R/hypersub.R | 173 +++++++++++++++++++++++++++--- R/persp.im.R | 4 R/plot.im.R | 4 R/plot3d.R | 12 +- R/ppp.R | 14 +- R/symbolmap.R | 45 ++++++- R/unnormdensity.R | 241 +++++++++++++++++++++++++++++------------- inst/CITATION | 98 ++++++----------- inst/doc/packagesizes.txt | 1 man/Extract.hyperframe.Rd | 31 +++++ man/as.colourmap.Rd |only man/colourmap.Rd | 4 man/hyperframe.Rd | 6 - man/integral.density.Rd |only man/macros/defns.Rd | 3 man/pHcolourmap.Rd |only man/plot.symbolmap.Rd | 9 + man/restrict.colourmap.Rd |only man/spatstat.geom-internal.Rd | 2 man/unnormdensity.Rd | 13 ++ tests/testsGtoJ.R | 15 ++ 30 files changed, 734 insertions(+), 223 deletions(-)
Title: Clinical Trial Designs in 'rstan'
Description: A collection of clinical trial designs and methods, implemented in
'rstan' and R, including: the Continual Reassessment Method by O'Quigley et
al. (1990) <doi:10.2307/2531628>; EffTox by Thall & Cook (2004)
<doi:10.1111/j.0006-341X.2004.00218.x>; the two-parameter logistic method of
Neuenschwander, Branson & Sponer (2008) <doi:10.1002/sim.3230>; and the
Augmented Binary method by Wason & Seaman (2013) <doi:10.1002/sim.5867>; and
more. We provide functions to aid model-fitting and analysis.
The 'rstan' implementations may also serve as a cookbook to anyone looking
to extend or embellish these models. We hope that this package encourages
the use of Bayesian methods in clinical trials. There is a preponderance of
early phase trial designs because this is where Bayesian methods are used
most. If there is a method you would like implemented, please get in touch.
Author: Kristian Brock [aut, cre] ,
Trustees of Columbia University [cph]
Maintainer: Kristian Brock <kristian.brock@gmail.com>
Diff between trialr versions 0.1.5 dated 2020-10-15 and 0.1.6 dated 2023-03-12
trialr-0.1.5/trialr/R/zzz.R |only trialr-0.1.5/trialr/inst/include/meta_header.hpp |only trialr-0.1.5/trialr/src/init.cpp |only trialr-0.1.5/trialr/src/stan_files |only trialr-0.1.5/trialr/tools |only trialr-0.1.5/trialr/vignettes/A400-EffTox_cache/html/run_sims_0a707b97ea26aea63a7155e42b0b7dcc.RData |only trialr-0.1.5/trialr/vignettes/A400-EffTox_cache/html/run_sims_0a707b97ea26aea63a7155e42b0b7dcc.rdb |only trialr-0.1.5/trialr/vignettes/A400-EffTox_cache/html/run_sims_0a707b97ea26aea63a7155e42b0b7dcc.rdx |only trialr-0.1.6/trialr/DESCRIPTION | 14 trialr-0.1.6/trialr/MD5 | 94 trialr-0.1.6/trialr/R/EffTox.R | 6 trialr-0.1.6/trialr/R/crm_fit.R | 10 trialr-0.1.6/trialr/R/stanmodels.R | 64 trialr-0.1.6/trialr/build/vignette.rds |binary trialr-0.1.6/trialr/configure |only trialr-0.1.6/trialr/configure.win |only trialr-0.1.6/trialr/inst/doc/A200-CRM.html | 670 ++++-- trialr-0.1.6/trialr/inst/doc/A210-CRM-visualisation.html | 388 ++- trialr-0.1.6/trialr/inst/doc/A220-CRM-pathways.html | 793 +++++-- trialr-0.1.6/trialr/inst/doc/A250-LevyCaseStudy.html | 1005 +++++----- trialr-0.1.6/trialr/inst/doc/A260-TITE-CRM.html | 349 ++- trialr-0.1.6/trialr/inst/doc/A300-NeuenschwanderBransonGsponer.html | 527 +++-- trialr-0.1.6/trialr/inst/doc/A400-EffTox.html | 626 ++++-- trialr-0.1.6/trialr/inst/doc/A500-HierarchicalBayesianResponse.html | 504 +++-- trialr-0.1.6/trialr/inst/doc/A600-BEBOP.html | 389 ++- trialr-0.1.6/trialr/inst/include/stan_meta_header.hpp |only trialr-0.1.6/trialr/inst/stan |only trialr-0.1.6/trialr/man/as.mcmc.list.crm_fit.Rd | 4 trialr-0.1.6/trialr/man/as.mcmc.list.efftox_fit.Rd | 4 trialr-0.1.6/trialr/src/Makevars | 22 trialr-0.1.6/trialr/src/Makevars.win | 23 trialr-0.1.6/trialr/src/RcppExports.cpp |only trialr-0.1.6/trialr/src/stanExports_AugBin2T1A.cc |only trialr-0.1.6/trialr/src/stanExports_AugBin2T1A.h |only trialr-0.1.6/trialr/src/stanExports_BebopInPeps2.cc |only trialr-0.1.6/trialr/src/stanExports_BebopInPeps2.h |only trialr-0.1.6/trialr/src/stanExports_CrmEmpiricNormalPrior.cc |only trialr-0.1.6/trialr/src/stanExports_CrmEmpiricNormalPrior.h |only trialr-0.1.6/trialr/src/stanExports_CrmOneParamLogisticGammaPrior.cc |only trialr-0.1.6/trialr/src/stanExports_CrmOneParamLogisticGammaPrior.h |only trialr-0.1.6/trialr/src/stanExports_CrmOneParamLogisticNormalPrior.cc |only trialr-0.1.6/trialr/src/stanExports_CrmOneParamLogisticNormalPrior.h |only trialr-0.1.6/trialr/src/stanExports_CrmTwoParamLogisticNormalPrior.cc |only trialr-0.1.6/trialr/src/stanExports_CrmTwoParamLogisticNormalPrior.h |only trialr-0.1.6/trialr/src/stanExports_EffTox.cc |only trialr-0.1.6/trialr/src/stanExports_EffTox.h |only trialr-0.1.6/trialr/src/stanExports_NeuenschwanderTwoParamLogit.cc |only trialr-0.1.6/trialr/src/stanExports_NeuenschwanderTwoParamLogit.h |only trialr-0.1.6/trialr/src/stanExports_ThallHierarchicalBinary.cc |only trialr-0.1.6/trialr/src/stanExports_ThallHierarchicalBinary.h |only trialr-0.1.6/trialr/vignettes/A400-EffTox_cache/html/run_sims_4535c5a17683c166fdab5b986d5aba6b.RData |only trialr-0.1.6/trialr/vignettes/A400-EffTox_cache/html/run_sims_4535c5a17683c166fdab5b986d5aba6b.rdb |only trialr-0.1.6/trialr/vignettes/A400-EffTox_cache/html/run_sims_4535c5a17683c166fdab5b986d5aba6b.rdx |only trialr-0.1.6/trialr/vignettes/A400-EffTox_files/figure-html/unnamed-chunk-5-1.png |binary trialr-0.1.6/trialr/vignettes/A400-EffTox_files/figure-html/unnamed-chunk-6-1.png |binary trialr-0.1.6/trialr/vignettes/library.bib | 20 56 files changed, 3492 insertions(+), 2020 deletions(-)
Title: Survival Analysis
Description: Contains the core survival analysis routines, including
definition of Surv objects,
Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models,
and parametric accelerated failure time models.
Author: Terry M Therneau [aut, cre],
Thomas Lumley [ctb, trl] ,
Atkinson Elizabeth [ctb],
Crowson Cynthia [ctb]
Maintainer: Terry M Therneau <therneau.terry@mayo.edu>
Diff between survival versions 3.5-3 dated 2023-02-12 and 3.5-5 dated 2023-03-12
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Title: Convert Spatial Data Using Tidy Tables
Description: Tools to convert from specific formats to more general forms of
spatial data. Using tables to store the actual entities present in spatial
data provides flexibility, and the functions here deliberately
minimize the level of interpretation applied, leaving that for specific
applications. Includes support for simple features, round-trip for 'Spatial' classes and long-form
tables, analogous to 'ggplot2::fortify'. There is also a more 'normal form' representation
that decomposes simple features and their kin to tables of objects, parts, and unique coordinates.
Author: Michael D. Sumner [aut, cre]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>
Diff between spbabel versions 0.5.5 dated 2020-09-15 and 0.6.0 dated 2023-03-12
spbabel-0.5.5/spbabel/R/map_table.r |only spbabel-0.5.5/spbabel/R/release-questions.r |only spbabel-0.5.5/spbabel/R/sf.r |only spbabel-0.5.5/spbabel/R/sfFromTable.r |only spbabel-0.5.5/spbabel/R/sp.r |only spbabel-0.5.5/spbabel/R/spFromTable.r |only spbabel-0.5.5/spbabel/R/spbabel-package.r |only spbabel-0.5.5/spbabel/R/sptable.r |only spbabel-0.5.5/spbabel/R/trip.r |only spbabel-0.5.5/spbabel/R/unique_ids.r |only spbabel-0.5.5/spbabel/R/utils.r |only spbabel-0.5.5/spbabel/build |only spbabel-0.5.5/spbabel/inst/doc |only spbabel-0.5.5/spbabel/vignettes |only spbabel-0.6.0/spbabel/DESCRIPTION | 15 - spbabel-0.6.0/spbabel/MD5 | 44 +-- spbabel-0.6.0/spbabel/NAMESPACE | 1 spbabel-0.6.0/spbabel/NEWS.md | 8 spbabel-0.6.0/spbabel/R/map_table.R |only spbabel-0.6.0/spbabel/R/sf.R |only spbabel-0.6.0/spbabel/R/sfFromTable.R |only spbabel-0.6.0/spbabel/R/sp.R |only spbabel-0.6.0/spbabel/R/spFromTable.R |only spbabel-0.6.0/spbabel/R/spbabel-package.R |only spbabel-0.6.0/spbabel/R/sptable.R |only spbabel-0.6.0/spbabel/R/sysdata.rda |only spbabel-0.6.0/spbabel/R/trip.R |only spbabel-0.6.0/spbabel/R/unique_ids.R |only spbabel-0.6.0/spbabel/R/utils.R |only spbabel-0.6.0/spbabel/README.md | 77 +++--- spbabel-0.6.0/spbabel/man/as_tibble.sfg.Rd | 42 +++ spbabel-0.6.0/spbabel/tests/testthat/test-misc.R | 5 spbabel-0.6.0/spbabel/tests/testthat/test-replacement.R | 40 +-- spbabel-0.6.0/spbabel/tests/testthat/test-spFromTable.R | 177 +++++++--------- spbabel-0.6.0/spbabel/tests/testthat/test-sptable.R | 109 ++++----- 35 files changed, 273 insertions(+), 245 deletions(-)
Title: Estimating Hierarchical Linear Models for Single-Case Designs
Description: Provides a set of tools for estimating hierarchical linear
models and effect sizes based on data from single-case designs.
Functions are provided for calculating standardized mean difference effect sizes that
are directly comparable to standardized mean differences estimated from between-subjects randomized experiments,
as described in Hedges, Pustejovsky, and Shadish (2012) <DOI:10.1002/jrsm.1052>;
Hedges, Pustejovsky, and Shadish (2013) <DOI:10.1002/jrsm.1086>;
Pustejovsky, Hedges, and Shadish (2014) <DOI:10.3102/1076998614547577>;
and Chen, Pustejovsky, Klingbeil, and Van Norman (2023) <DOI:10.1016/j.jsp.2023.02.002>.
Includes an interactive web interface.
Author: James Pustejovsky [aut, cre],
Man Chen [aut],
Bethany Hamilton [aut]
Maintainer: James Pustejovsky <jepusto@gmail.com>
Diff between scdhlm versions 0.7.1 dated 2023-01-10 and 0.7.2 dated 2023-03-12
scdhlm-0.7.1/scdhlm/inst/CITATION |only scdhlm-0.7.1/scdhlm/tests/testthat/Rplots.pdf |only scdhlm-0.7.2/scdhlm/DESCRIPTION | 15 scdhlm-0.7.2/scdhlm/MD5 | 58 +-- scdhlm-0.7.2/scdhlm/NEWS.md | 7 scdhlm-0.7.2/scdhlm/R/calc_BCSMD.R | 14 scdhlm-0.7.2/scdhlm/R/graphing-functions.R | 106 ++++-- scdhlm-0.7.2/scdhlm/R/preprocess-function.R | 5 scdhlm-0.7.2/scdhlm/data/Bryant2018.RData |binary scdhlm-0.7.2/scdhlm/data/CaseHarrisGraham.RData |binary scdhlm-0.7.2/scdhlm/data/Datchuk.RData |binary scdhlm-0.7.2/scdhlm/data/DelemereDounavi.RData |binary scdhlm-0.7.2/scdhlm/data/GunningEspie.RData |binary scdhlm-0.7.2/scdhlm/data/Peltier.RData |binary scdhlm-0.7.2/scdhlm/data/Rodgers.RData |binary scdhlm-0.7.2/scdhlm/data/Thiemann2001.RData |binary scdhlm-0.7.2/scdhlm/data/Thiemann2004.RData |binary scdhlm-0.7.2/scdhlm/inst/doc/Estimating-effect-sizes.html | 4 scdhlm-0.7.2/scdhlm/inst/shiny-examples/scdhlm/lme-fit.R | 6 scdhlm-0.7.2/scdhlm/inst/shiny-examples/scdhlm/markdown/references.md | 2 scdhlm-0.7.2/scdhlm/inst/shiny-examples/scdhlm/markdown/scdhlm.md | 4 scdhlm-0.7.2/scdhlm/man/batch_calc_BCSMD.Rd | 3 scdhlm-0.7.2/scdhlm/man/calc_BCSMD.Rd | 16 - scdhlm-0.7.2/scdhlm/man/default_times.Rd | 3 scdhlm-0.7.2/scdhlm/man/graph_SCD.Rd | 11 scdhlm-0.7.2/scdhlm/man/preprocess_SCD.Rd | 3 scdhlm-0.7.2/scdhlm/tests/testthat/test-calc_BCSMD.R | 12 scdhlm-0.7.2/scdhlm/tests/testthat/test-centering.R | 44 ++ scdhlm-0.7.2/scdhlm/tests/testthat/test-g_mlm.R | 3 scdhlm-0.7.2/scdhlm/tests/testthat/test_graphing_functions.R | 156 +++++++++- scdhlm-0.7.2/scdhlm/tests/testthat/test_preprocess_function.R | 22 - 31 files changed, 360 insertions(+), 134 deletions(-)
Title: Statistical Power and Sample Size Calculation Tools
Description: Statistical power and minimum required sample size calculations for (1) testing a proportion (one-sample) against a constant, (2) testing a mean (one-sample) against a constant, (3) testing difference between two proportions (independent samples), (4) testing difference between two means (parametric and non-parametric tests for independent and paired samples), (5) testing a correlation (one-sample) against a constant, (6) testing difference between two correlations (independent samples), (7) testing a single coefficient in multiple linear regression, logistic regression, and poisson regression (with standardized or unstandardized coefficients, with no covariates or covariate adjusted), (8) testing an indirect effect (with standardized or unstandardized coefficients, with no covariates or covariate adjusted) in the mediation analysis (Sobel, Joint, and Monte Carlo tests), (9) testing an R-squared against zero in linear regression, (10) testing an R-squared difference against zero [...truncated...]
Author: Metin Bulus [aut, cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between pwrss versions 0.2.0 dated 2022-12-14 and 0.3.0 dated 2023-03-12
pwrss-0.2.0/pwrss/man/pwrss.z.2means.Rd |only pwrss-0.2.0/pwrss/man/pwrss.z.mean.Rd |only pwrss-0.3.0/pwrss/DESCRIPTION | 12 pwrss-0.3.0/pwrss/MD5 | 56 pwrss-0.3.0/pwrss/NAMESPACE | 22 pwrss-0.3.0/pwrss/NEWS.md |only pwrss-0.3.0/pwrss/R/pwrss.R | 3003 +++++++++++++++++++++++------ pwrss-0.3.0/pwrss/README.md | 20 pwrss-0.3.0/pwrss/build/vignette.rds |binary pwrss-0.3.0/pwrss/inst/CITATION | 12 pwrss-0.3.0/pwrss/inst/doc/examples.R | 481 +++- pwrss-0.3.0/pwrss/inst/doc/examples.Rmd | 1024 ++++++++- pwrss-0.3.0/pwrss/inst/doc/examples.html | 2195 +++++++++++++++++---- pwrss-0.3.0/pwrss/man/power.chisq.test.Rd |only pwrss-0.3.0/pwrss/man/power.f.test.Rd | 24 pwrss-0.3.0/pwrss/man/power.t.test.Rd | 54 pwrss-0.3.0/pwrss/man/power.z.test.Rd | 53 pwrss-0.3.0/pwrss/man/pwrss.chisq.gofct.Rd |only pwrss-0.3.0/pwrss/man/pwrss.f.ancova.Rd | 115 - pwrss-0.3.0/pwrss/man/pwrss.f.reg.Rd | 36 pwrss-0.3.0/pwrss/man/pwrss.f.rmanova.Rd | 92 pwrss-0.3.0/pwrss/man/pwrss.np.2means.Rd |only pwrss-0.3.0/pwrss/man/pwrss.t.2means.Rd | 135 - pwrss-0.3.0/pwrss/man/pwrss.t.mean.Rd |only pwrss-0.3.0/pwrss/man/pwrss.t.reg.Rd | 109 - pwrss-0.3.0/pwrss/man/pwrss.z.2corrs.Rd | 29 pwrss-0.3.0/pwrss/man/pwrss.z.2props.Rd | 127 - pwrss-0.3.0/pwrss/man/pwrss.z.corr.Rd | 26 pwrss-0.3.0/pwrss/man/pwrss.z.logreg.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.med.Rd | 74 pwrss-0.3.0/pwrss/man/pwrss.z.pois.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.prop.Rd | 129 - pwrss-0.3.0/pwrss/vignettes/examples.Rmd | 1024 ++++++++- pwrss-0.3.0/pwrss/vignettes/med.tiff |only 34 files changed, 7280 insertions(+), 1572 deletions(-)
Title: Simulation-Based Maximum Likelihood Parameter Estimation
Description: An estimation method that can use computer simulations to
approximate maximum-likelihood estimates even when the likelihood function can not
be evaluated directly. It can be applied whenever it is feasible to conduct many
simulations, but works best when the data is approximately Poisson distributed.
It was originally designed for demographic inference in evolutionary
biology (Naduvilezhath et al., 2011 <doi:10.1111/j.1365-294X.2011.05131.x>,
Mathew et al., 2013 <doi:10.1002/ece3.722>).
It has optional support for conducting coalescent simulation using
the 'coala' package.
Author: Paul Staab [aut],
Lisha Mathew [aut],
Dirk Metzler [aut, ths, cre]
Maintainer: Dirk Metzler <metzler@bio.lmu.de>
Diff between jaatha versions 3.2.3 dated 2023-01-08 and 3.2.4 dated 2023-03-12
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/likelihood.R | 11 ++++++----- inst/doc/jaatha-evolution.html | 2 +- inst/doc/jaatha-intro.html | 2 +- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: A Framework for Robust Shiny Applications
Description: An opinionated framework for building a production-ready
'Shiny' application. This package contains a series of tools for
building a robust 'Shiny' application from start to finish.
Author: Colin Fay [cre, aut] ,
Vincent Guyader [aut] ,
Sebastien Rochette [aut] ,
Cervan Girard [aut] ,
Novica Nakov [ctb],
David Granjon [ctb],
Arthur Breant [ctb],
Antoine Languillaume [ctb],
ThinkR [cph]
Maintainer: Colin Fay <contact@colinfay.me>
Diff between golem versions 0.3.5 dated 2022-10-18 and 0.4.0 dated 2023-03-12
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Title: Create a Data Dictionary
Description: Creates a data dictionary from any dataframe or tibble in your R environment.
You can opt to add variable labels. You can write the object directly to Excel.
Author: Bethany Jones [aut, cre]
Maintainer: Bethany Jones <r.data.nerd@gmail.com>
Diff between datadictionary versions 0.1.0 dated 2022-07-18 and 1.0.0 dated 2023-03-12
DESCRIPTION | 15 MD5 | 22 NAMESPACE | 2 NEWS.md | 8 R/create_dictionary.R | 9 R/summarise_variable.R | 89 +-- R/utils.R | 744 ++++++++++++++++--------------- README.md | 479 ++++++++++--------- man/create_dictionary.Rd | 5 tests/testthat/test-create_dictionary.R | 79 +++ tests/testthat/test-summarise_variable.R | 196 +++++++- tests/testthat/testdata |only 12 files changed, 988 insertions(+), 660 deletions(-)
More information about datadictionary at CRAN
Permanent link
Title: Sparse Three-Dimensional Arrays and Linear Algebra Utilities
Description: Defines sparse three-dimensional arrays
and supports standard operations on them.
The package also includes utility functions for
matrix calculations that are common in
statistics, such as quadratic forms.
Author: Adrian Baddeley [aut, cre, cph]
,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.sparse versions 3.0-0 dated 2022-10-21 and 3.0-1 dated 2023-03-12
DESCRIPTION | 11 +++++------ MD5 | 15 ++++++++------- NEWS | 7 +++++++ R/sparsecommon.R | 4 ++-- inst/CITATION |only inst/doc/packagesizes.txt | 1 + man/macros/defns.Rd | 3 +++ src/linalg.c | 2 +- src/sparselinalg.c | 2 +- 9 files changed, 28 insertions(+), 17 deletions(-)
More information about spatstat.sparse at CRAN
Permanent link
Title: Datasets for 'spatstat' Family
Description: Contains all the datasets for the 'spatstat' family of packages.
Author: Adrian Baddeley [aut, cre] ,
Rolf Turner [aut] ,
Ege Rubak [aut] ,
W Aherne [ctb],
Freda Alexander [ctb],
Qi Wei Ang [ctb],
Sourav Banerjee [ctb],
Mark Berman [ctb],
R Bernhardt [ctb],
Thomas Berndtsen [ctb],
Andrew Bevan [ctb],
Jeffrey Betts [ctb],
[...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.data versions 3.0-0 dated 2022-10-21 and 3.0-1 dated 2023-03-12
DESCRIPTION | 11 +-- MD5 | 127 +++++++++++++++++++++++----------------------- NEWS | 7 ++ data/Kovesi.rda |binary data/amacrine.rda |binary data/anemones.rda |binary data/ants.rda |binary data/austates.rda |binary data/bdspots.rda |binary data/bei.rda |binary data/betacells.rda |binary data/bramblecanes.rda |binary data/bronzefilter.rda |binary data/btb.rda |binary data/cells.rda |binary data/cetaceans.rda |binary data/chicago.rda |binary data/chorley.rda |binary data/clmfires.rda |binary data/concrete.rda |binary data/copper.rda |binary data/demohyper.rda |binary data/demopat.rda |binary data/dendrite.rda |binary data/finpines.rda |binary data/flu.rda |binary data/ganglia.rda |binary data/gordon.rda |binary data/gorillas.rda |binary data/hamster.rda |binary data/heather.rda |binary data/humberside.rda |binary data/hyytiala.rda |binary data/japanesepines.rda |binary data/lansing.rda |binary data/letterR.rda |binary data/longleaf.rda |binary data/mucosa.rda |binary data/murchison.rda |binary data/nbfires.rda |binary data/nztrees.rda |binary data/osteo.rda |binary data/paracou.rda |binary data/ponderosa.rda |binary data/pyramidal.rda |binary data/redwood.rda |binary data/redwood3.rda |binary data/redwoodfull.rda |binary data/residualspaper.rda |binary data/shapley.rda |binary data/simba.rda |binary data/simdat.rda |binary data/simplenet.rda |binary data/spiders.rda |binary data/sporophores.rda |binary data/spruces.rda |binary data/stonetools.rda |binary data/swedishpines.rda |binary data/urkiola.rda |binary data/vesicles.rda |binary data/waka.rda |binary data/waterstriders.rda |binary inst/CITATION |only inst/doc/packagesizes.txt | 1 man/macros/defns.Rd | 3 + 65 files changed, 80 insertions(+), 69 deletions(-)
Title: Interactive Data Tables for R
Description: Interactive data tables for R, based on the 'React Table'
JavaScript library. Provides an HTML widget that can be used in 'R Markdown'
or 'Quarto' documents, 'Shiny' applications, or viewed from an R console.
Author: Greg Lin [aut, cre],
Tanner Linsley [ctb, cph] ,
Emotion team and other contributors [ctb, cph] ,
Kent Russell [ctb, cph] ,
Ramnath Vaidyanathan [ctb, cph] ,
Joe Cheng [ctb, cph] ,
JJ Allaire [ctb, cph] ,
Yihui Xie [ctb, cph] ,
Kenton Russell [ctb, c [...truncated...]
Maintainer: Greg Lin <glin@glin.io>
Diff between reactable versions 0.4.3 dated 2023-01-07 and 0.4.4 dated 2023-03-12
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/reactable.R | 5 +++-- inst/htmlwidgets/reactable.yaml | 2 +- man/as.tags.reactable.Rd | 4 +++- tests/testthat/_snaps/reactable.md | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Calculate Accurate Precision-Recall and ROC (Receiver Operator
Characteristics) Curves
Description: Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics)
curves. Saito and Rehmsmeier (2015) <doi:10.1371/journal.pone.0118432>.
Author: Takaya Saito [aut, cre] ,
Marc Rehmsmeier [aut]
Maintainer: Takaya Saito <takaya.saito@outlook.com>
Diff between precrec versions 0.14.1 dated 2023-01-08 and 0.14.2 dated 2023-03-12
DESCRIPTION | 8 - MD5 | 24 ++--- NEWS.md | 4 R/etc_utils_fortify.R | 2 R/g_fortify.R | 16 +-- build/vignette.rds |binary inst/CITATION | 9 +- inst/doc/introduction.R | 1 inst/doc/introduction.Rmd | 1 inst/doc/introduction.html | 190 ++++++++++++++++++++++----------------------- man/fortify.Rd | 18 ++-- tests/testthat/setup.R | 1 vignettes/introduction.Rmd | 1 13 files changed, 141 insertions(+), 134 deletions(-)
Title: Non-Astonishing Results in R
Description: Simple tools for converting columns to new data types. Intuitive functions for columns with missing values.
Author: David Sjoberg
Maintainer: David Sjoberg <dav.sjob@gmail.com>
Diff between hablar versions 0.3.1 dated 2022-11-11 and 0.3.2 dated 2023-03-12
DESCRIPTION | 6 MD5 | 62 R/hablar.R | 3234 ++++++++++++++--------------- README.md | 418 +-- build/vignette.rds |binary inst/doc/convert.R | 120 - inst/doc/convert.Rmd | 278 +- inst/doc/convert.html | 1126 +++++----- inst/doc/hablar.R | 126 - inst/doc/hablar.Rmd | 300 +- inst/doc/hablar.html | 1243 +++++------ inst/doc/retype.R | 128 - inst/doc/retype.Rmd | 264 +- inst/doc/retype.html | 3434 +++++++++++++++---------------- inst/doc/s.R | 246 +- inst/doc/s.Rmd | 480 ++-- inst/doc/s.html | 1260 +++++------ tests/testthat.R | 8 tests/testthat/test.check_df.R | 388 +-- tests/testthat/test.convert.R | 394 +-- tests/testthat/test.could_this_be_that.R | 202 - tests/testthat/test.create_dummy.R | 86 tests/testthat/test.find_in_df.R | 426 +-- tests/testthat/test.ifs.R | 196 - tests/testthat/test.n_unique.R | 30 tests/testthat/test.rationalize.R | 112 - tests/testthat/test.retype.R | 266 +- tests/testthat/test.session_funs.R | 16 vignettes/convert.Rmd | 278 +- vignettes/hablar.Rmd | 300 +- vignettes/retype.Rmd | 264 +- vignettes/s.Rmd | 480 ++-- 32 files changed, 8105 insertions(+), 8066 deletions(-)
Title: Easy Access to 'ggplot2' Commands
Description: Provides a series of aliases to commonly used but difficult
to remember 'ggplot2' sequences.
Author: Jonathan Carroll [aut, cre] ,
Alicia Schep [aut] ,
Jonathan Sidi [aut] ,
Bob Rudis [ctb] ,
Mohamed El Fodil Ihaddaden [ctb],
Thomas Neitmann [ctb]
Maintainer: Jonathan Carroll <rpkg@jcarroll.com.au>
Diff between ggeasy versions 0.1.3 dated 2021-01-07 and 0.1.4 dated 2023-03-12
DESCRIPTION | 7 MD5 | 36 +-- NAMESPACE | 3 NEWS.md | 8 R/gridlines.R |only R/labs2.R | 4 R/legend.R | 6 R/utils.R |only README.md | 25 +- build/vignette.rds |binary inst/doc/shortcuts.R | 24 +- inst/doc/shortcuts.Rmd | 31 ++ inst/doc/shortcuts.html | 435 ++++++++++++++++++++++++++++++--------- inst/doc/tests_and_coverage.html | 275 ++++++++++++++++++++++-- man/easy_remove_gridlines.Rd |only tests/testthat/_snaps |only tests/testthat/test-gridlines.R |only tests/testthat/test-labs.R | 4 tests/testthat/test-legend.R | 8 vignettes/shortcuts.Rmd | 31 ++ 20 files changed, 736 insertions(+), 161 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-15 1.0.0
2021-06-10 0.3.2
Title: An R Package to Extend 'ACER ConQuest'
Description: Extends 'ACER ConQuest' through a family of functions
designed to improve graphical outputs and help with advanced analysis
(e.g., differential item functioning). Allows R users to call
'ACER ConQuest' from within R and read 'ACER ConQuest' System Files
(generated by the command `put` <https://conquestmanual.acer.org/s4-00.html#put>).
Requires 'ACER ConQuest' version 5.29.5 or later.
A demonstration version can be downloaded from <https://shop.acer.org/acer-conquest-5.html>.
Author: Dan Cloney [aut, cre] ,
Ray Adams [aut]
Maintainer: Dan Cloney <dan.cloney@acer.org>
Diff between conquestr versions 0.9.96 dated 2022-04-01 and 1.0.7 dated 2023-03-12
conquestr-0.9.96/conquestr/man/ReadMatrix_C.Rd |only conquestr-0.9.96/conquestr/man/getCqParams2.Rd |only conquestr-0.9.96/conquestr/man/infoFunc.Rd |only conquestr-0.9.96/conquestr/man/informationWrightMap2.Rd |only conquestr-0.9.96/conquestr/man/timesTwo.Rd |only conquestr-1.0.7/conquestr/DESCRIPTION | 29 conquestr-1.0.7/conquestr/MD5 | 323 +-- conquestr-1.0.7/conquestr/NAMESPACE | 4 conquestr-1.0.7/conquestr/NEWS.md | 17 conquestr-1.0.7/conquestr/R/RcppExports.R | 7 conquestr-1.0.7/conquestr/R/ReadConQuestLibrary.R | 596 +++--- conquestr-1.0.7/conquestr/R/ReadConQuestRout_createDF.R | 62 conquestr-1.0.7/conquestr/R/ReadConQuestState.R | 281 --- conquestr-1.0.7/conquestr/R/ReadConQuestState_createDF.R | 117 - conquestr-1.0.7/conquestr/R/cleaningHelpers.R | 163 - conquestr-1.0.7/conquestr/R/conquestr.R | 32 conquestr-1.0.7/conquestr/R/conquestrFunc.R | 563 ++---- conquestr-1.0.7/conquestr/R/generateHelpers.R | 904 ++++++---- conquestr-1.0.7/conquestr/R/infoHelpers.R | 455 ++--- conquestr-1.0.7/conquestr/R/itanalHelpers.R | 206 +- conquestr-1.0.7/conquestr/R/plotGeneral.R | 580 ++++-- conquestr-1.0.7/conquestr/R/plotRout.R | 188 +- conquestr-1.0.7/conquestr/R/postProcessCqSysfile.R |only conquestr-1.0.7/conquestr/R/pvHelpers.R | 28 conquestr-1.0.7/conquestr/R/residHelpers.R | 76 conquestr-1.0.7/conquestr/R/showHelpers.R |only conquestr-1.0.7/conquestr/R/thrstThrsh.R | 326 +-- conquestr-1.0.7/conquestr/README.md | 4 conquestr-1.0.7/conquestr/build/vignette.rds |binary conquestr-1.0.7/conquestr/inst/doc/data-cleaning-functions-in-conquestr.html | 227 +- conquestr-1.0.7/conquestr/inst/doc/generateResponses.R |only conquestr-1.0.7/conquestr/inst/doc/generateResponses.Rmd |only conquestr-1.0.7/conquestr/inst/doc/generateResponses.html |only conquestr-1.0.7/conquestr/inst/doc/intro-to-conquestr.R | 8 conquestr-1.0.7/conquestr/inst/doc/intro-to-conquestr.Rmd | 10 conquestr-1.0.7/conquestr/inst/doc/intro-to-conquestr.html | 528 ++--- conquestr-1.0.7/conquestr/inst/doc/itanal-in-conquestr.html | 227 +- conquestr-1.0.7/conquestr/inst/doc/plotting.R | 24 conquestr-1.0.7/conquestr/inst/doc/plotting.Rmd | 24 conquestr-1.0.7/conquestr/inst/doc/plotting.html | 156 - conquestr-1.0.7/conquestr/inst/doc/responseProbs.R | 74 conquestr-1.0.7/conquestr/inst/doc/responseProbs.Rmd | 74 conquestr-1.0.7/conquestr/inst/doc/responseProbs.html | 783 +++++++- conquestr-1.0.7/conquestr/inst/doc/test_item_review_sheet_markdown.R | 15 conquestr-1.0.7/conquestr/inst/doc/test_item_review_sheet_markdown.Rmd | 33 conquestr-1.0.7/conquestr/inst/doc/test_item_review_sheet_markdown.html | 148 + conquestr-1.0.7/conquestr/inst/extdata/ex1.cqc | 4 conquestr-1.0.7/conquestr/inst/extdata/myicc.rout |binary conquestr-1.0.7/conquestr/inst/extdata/mysysfile.cqs |binary conquestr-1.0.7/conquestr/man/ConQuestCall.Rd | 6 conquestr-1.0.7/conquestr/man/ConQuestRout.Rd | 6 conquestr-1.0.7/conquestr/man/ConQuestSys.Rd | 6 conquestr-1.0.7/conquestr/man/ItemDfStdZ.Rd | 4 conquestr-1.0.7/conquestr/man/ItemDfStdZMerge.Rd | 6 conquestr-1.0.7/conquestr/man/ReadADesignMatrices.Rd | 2 conquestr-1.0.7/conquestr/man/ReadAllGroupsData.Rd | 2 conquestr-1.0.7/conquestr/man/ReadAnchor.Rd | 2 conquestr-1.0.7/conquestr/man/ReadAnchorList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadBDesignMatrices.Rd | 2 conquestr-1.0.7/conquestr/man/ReadBandDefine.Rd | 2 conquestr-1.0.7/conquestr/man/ReadBandDefinesList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadBoolean.Rd | 2 conquestr-1.0.7/conquestr/man/ReadCDesignMatrices.Rd | 2 conquestr-1.0.7/conquestr/man/ReadCategorise.Rd | 2 conquestr-1.0.7/conquestr/man/ReadCategoriseList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadCodeList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadDouble.Rd | 2 conquestr-1.0.7/conquestr/man/ReadDoubleList.Rd |only conquestr-1.0.7/conquestr/man/ReadEstimatesRecord.Rd | 2 conquestr-1.0.7/conquestr/man/ReadFit.Rd | 2 conquestr-1.0.7/conquestr/man/ReadFitList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadGExportOptions.Rd |only conquestr-1.0.7/conquestr/man/ReadGExportOptionsList.Rd |only conquestr-1.0.7/conquestr/man/ReadGraph.Rd | 2 conquestr-1.0.7/conquestr/man/ReadIRecode.Rd | 2 conquestr-1.0.7/conquestr/man/ReadIRecodeList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadImplicitVar.Rd | 2 conquestr-1.0.7/conquestr/man/ReadInteger.Rd | 2 conquestr-1.0.7/conquestr/man/ReadItemSet.Rd | 2 conquestr-1.0.7/conquestr/man/ReadItemSetList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadKeyList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadLabel.Rd | 2 conquestr-1.0.7/conquestr/man/ReadLabelList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadLookUp.Rd | 2 conquestr-1.0.7/conquestr/man/ReadLookUpList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadMatrix.Rd | 2 conquestr-1.0.7/conquestr/man/ReadMatrixList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadMatrixVars.Rd | 2 conquestr-1.0.7/conquestr/man/ReadParameters.Rd | 2 conquestr-1.0.7/conquestr/man/ReadParametersList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadPoint.Rd | 2 conquestr-1.0.7/conquestr/man/ReadRandomStructure.Rd | 2 conquestr-1.0.7/conquestr/man/ReadRegression.Rd | 2 conquestr-1.0.7/conquestr/man/ReadRegressionList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadRegressionListLeg.Rd | 2 conquestr-1.0.7/conquestr/man/ReadResponse.Rd | 2 conquestr-1.0.7/conquestr/man/ReadResponseList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadSeries.Rd | 2 conquestr-1.0.7/conquestr/man/ReadString.Rd | 2 conquestr-1.0.7/conquestr/man/ReadStringList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadSys.Rd | 6 conquestr-1.0.7/conquestr/man/ReadTerms.Rd | 2 conquestr-1.0.7/conquestr/man/ReadTermsList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadVarInfo.Rd | 2 conquestr-1.0.7/conquestr/man/ReadVarList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadVariable.Rd | 2 conquestr-1.0.7/conquestr/man/ReadVariableList.Rd | 2 conquestr-1.0.7/conquestr/man/ReadYOneCase.Rd | 2 conquestr-1.0.7/conquestr/man/checkItemRespValid.Rd | 14 conquestr-1.0.7/conquestr/man/checkVars.Rd | 4 conquestr-1.0.7/conquestr/man/findConQuestExe.Rd | 2 conquestr-1.0.7/conquestr/man/fmtCqItanal.Rd | 2 conquestr-1.0.7/conquestr/man/fmtCqItanalSmry.Rd | 2 conquestr-1.0.7/conquestr/man/fmtCqItanalTbl.Rd | 2 conquestr-1.0.7/conquestr/man/genItems.Rd |only conquestr-1.0.7/conquestr/man/genResponses.Rd | 60 conquestr-1.0.7/conquestr/man/getCqData.Rd | 15 conquestr-1.0.7/conquestr/man/getCqDataDf.Rd | 21 conquestr-1.0.7/conquestr/man/getCqItanal.Rd | 6 conquestr-1.0.7/conquestr/man/getCqItanalFacility.Rd |only conquestr-1.0.7/conquestr/man/getCqItanalSummary.Rd |only conquestr-1.0.7/conquestr/man/getCqLongLabs.Rd |only conquestr-1.0.7/conquestr/man/getCqParams.Rd | 10 conquestr-1.0.7/conquestr/man/getCqRespModel.Rd |only conquestr-1.0.7/conquestr/man/getCqVars.Rd | 2 conquestr-1.0.7/conquestr/man/ginsOnDims.Rd |only conquestr-1.0.7/conquestr/man/infoWI.Rd | 6 conquestr-1.0.7/conquestr/man/informationWrightMap.Rd | 34 conquestr-1.0.7/conquestr/man/itemInfoAtTheta.Rd | 8 conquestr-1.0.7/conquestr/man/itemInfoOverTheta.Rd | 15 conquestr-1.0.7/conquestr/man/itemListToDeltaDots.Rd |only conquestr-1.0.7/conquestr/man/itemListToThresholds.Rd |only conquestr-1.0.7/conquestr/man/itemResp.Rd | 12 conquestr-1.0.7/conquestr/man/makeItemList.Rd | 118 + conquestr-1.0.7/conquestr/man/mleCalc.Rd | 8 conquestr-1.0.7/conquestr/man/myItemHelper.Rd | 8 conquestr-1.0.7/conquestr/man/pX.Rd | 28 conquestr-1.0.7/conquestr/man/perturbDelta.Rd | 15 conquestr-1.0.7/conquestr/man/perturbProbs.Rd | 11 conquestr-1.0.7/conquestr/man/plotCqHist.Rd | 8 conquestr-1.0.7/conquestr/man/plotDif.Rd | 12 conquestr-1.0.7/conquestr/man/plotItemMap.Rd | 29 conquestr-1.0.7/conquestr/man/plotMCC.Rd | 13 conquestr-1.0.7/conquestr/man/plotModelCCC.Rd |only conquestr-1.0.7/conquestr/man/plotModelExp.Rd |only conquestr-1.0.7/conquestr/man/plotRout.Rd | 15 conquestr-1.0.7/conquestr/man/postProcessGncases.Rd |only conquestr-1.0.7/conquestr/man/postProcessSys.Rd |only conquestr-1.0.7/conquestr/man/pvMeanVar.Rd | 2 conquestr-1.0.7/conquestr/man/rawScore.Rd | 6 conquestr-1.0.7/conquestr/man/readCharSafe.Rd | 4 conquestr-1.0.7/conquestr/man/recodeResps.Rd | 2 conquestr-1.0.7/conquestr/man/simplef.Rd | 33 conquestr-1.0.7/conquestr/man/simplep.Rd | 33 conquestr-1.0.7/conquestr/man/steigerStat.Rd | 2 conquestr-1.0.7/conquestr/man/sysFileOk.Rd |only conquestr-1.0.7/conquestr/man/sysToBMatrixDf.Rd | 13 conquestr-1.0.7/conquestr/man/sysToItemDifDf.Rd | 4 conquestr-1.0.7/conquestr/man/sysToItems.Rd | 11 conquestr-1.0.7/conquestr/man/testInfoAtTheta.Rd | 7 conquestr-1.0.7/conquestr/man/testInfoOverTheta.Rd | 16 conquestr-1.0.7/conquestr/man/thetaScore.Rd | 7 conquestr-1.0.7/conquestr/man/theta_ll.Rd | 10 conquestr-1.0.7/conquestr/man/thrstThrsh.Rd | 35 conquestr-1.0.7/conquestr/man/transformPvs.Rd | 4 conquestr-1.0.7/conquestr/man/zapSystemMissing.Rd | 3 conquestr-1.0.7/conquestr/src/RcppExports.cpp | 12 conquestr-1.0.7/conquestr/src/utilsCq.cpp | 21 conquestr-1.0.7/conquestr/tests/testthat/test-ConQuestRout.R | 6 conquestr-1.0.7/conquestr/tests/testthat/test-genHelpers.R |only conquestr-1.0.7/conquestr/tests/testthat/test-getCqItanal.R | 10 conquestr-1.0.7/conquestr/tests/testthat/test-plotItemMap.R |only conquestr-1.0.7/conquestr/vignettes/generateResponses.Rmd |only conquestr-1.0.7/conquestr/vignettes/intro-to-conquestr.Rmd | 10 conquestr-1.0.7/conquestr/vignettes/plotting.Rmd | 24 conquestr-1.0.7/conquestr/vignettes/responseProbs.Rmd | 74 conquestr-1.0.7/conquestr/vignettes/test_item_review_sheet_markdown.Rmd | 33 177 files changed, 4859 insertions(+), 3433 deletions(-)