Title: Estimate and Make Inference About Optimal Treatment Regimes via
Smoothed Methods
Description: Methods to estimate the optimal treatment regime among all linear regimes via smoothed estimation methods, and construct element-wise confidence intervals for the optimal linear treatment regime vector, as well as the confidence interval for the optimal value via wild bootstrap procedures, if the population follows treatments recommended by the optimal linear regime. See more details in: Wu, Y. and Wang, L. (2021), "Resampling-based Confidence Intervals for Model-free Robust Inference on Optimal Treatment Regimes", Biometrics, 77: 465– 476, <doi:10.1111/biom.13337>.
Author: Yunan Wu [aut, cre, cph],
Lan Wang [aut]
Maintainer: Yunan Wu <yunan.wu@utdallas.edu>
Diff between DTRKernSmooth versions 0.1.0 dated 2023-02-22 and 1.0.0 dated 2023-03-21
DESCRIPTION | 8 - MD5 | 22 +-- NAMESPACE | 2 R/Functions.R | 234 +++++++++++++++++++++++------------- R/RcppExports.R | 12 - man/DTR.Boots.KernSmooth.Rd | 98 ++++++++++----- man/DTR.KernSmooth.Rd | 81 +++++++++--- man/obj_value.Rd | 37 ++++- man/predict.DTR.Boots.KernSmooth.Rd | 12 + man/predict.DTR.KernSmooth.Rd | 12 + src/Functions.cpp | 109 ++++++++-------- src/RcppExports.cpp | 30 ++-- 12 files changed, 411 insertions(+), 246 deletions(-)
Title: A Vector Spatio-Temporal Data Structure for Data Analysis
Description: A spatiotemperal data object in a relational data structure to separate the recording of time variant/ invariant variables.
Author: H. Sherry Zhang [aut, cre] ,
Dianne Cook [aut] ,
Ursula Laa [aut] ,
Nicolas Langrene [aut] ,
Patricia Menendez [aut]
Maintainer: H. Sherry Zhang <huize.zhang@monash.edu>
Diff between cubble versions 0.2.0 dated 2022-11-17 and 0.2.1 dated 2023-03-21
DESCRIPTION | 8 +++---- MD5 | 22 +++++++++++---------- NEWS.md | 5 ++++ R/cubble-print.R | 3 +- R/dplyr-slice.R | 52 ++++++++++++++++++++++++++++++++++----------------- R/dplyr.R | 9 +++++--- R/vctrs.R | 4 +-- README.md | 2 - inst/doc/import.html | 2 - man/cubble-class.Rd | 2 - man/figures/logo.svg |only man/figures/raw.svg |only man/slice.Rd | 16 ++++++++------- 13 files changed, 78 insertions(+), 47 deletions(-)
Title: Functions for Time Series Analysis
Description: Nonparametric estimators and tests for time series analysis. The functions use bootstrap techniques and robust nonparametric difference-based estimators to test for the presence of possibly non-monotonic trends and for synchronicity of trends in multiple time series.
Author: Vyacheslav Lyubchich [aut, cre]
,
Yulia R. Gel [aut],
Alexander Brenning [ctb],
Calvin Chu [ctb],
Xin Huang [ctb],
Umar Islambekov [ctb],
Palina Niamkova [ctb],
Dorcas Ofori-Boateng [ctb],
Ethan D. Schaeffer [ctb],
Srishti Vishwakarma [aut],
Xingyu W [...truncated...]
Maintainer: Vyacheslav Lyubchich <lyubchich@umces.edu>
Diff between funtimes versions 9.0 dated 2022-09-08 and 9.1 dated 2023-03-21
funtimes-9.0/funtimes/man/i.tails.Rd |only funtimes-9.0/funtimes/man/q.tails.Rd |only funtimes-9.1/funtimes/DESCRIPTION | 14 - funtimes-9.1/funtimes/MD5 | 66 ++-- funtimes-9.1/funtimes/NAMESPACE | 4 funtimes-9.1/funtimes/R/ARest.R | 121 ++++----- funtimes-9.1/funtimes/R/GombayCPA_test.R | 132 ++++----- funtimes-9.1/funtimes/R/causality_pred.R | 181 ++++++------- funtimes-9.1/funtimes/R/ccf_boot.R | 223 +++++++++++----- funtimes-9.1/funtimes/R/fun_causality.R | 10 funtimes-9.1/funtimes/R/funtimes.R | 35 +- funtimes-9.1/funtimes/R/i.tails.R | 67 +---- funtimes-9.1/funtimes/R/notrend_test.R | 108 ++++---- funtimes-9.1/funtimes/R/q.tails.R | 64 +--- funtimes-9.1/funtimes/R/sync.test.R | 14 - funtimes-9.1/funtimes/R/sync_test.R | 160 +++++------ funtimes-9.1/funtimes/R/tails_i.R |only funtimes-9.1/funtimes/R/tails_q.R |only funtimes-9.1/funtimes/R/wavk_test.R | 120 ++++---- funtimes-9.1/funtimes/build/partial.rdb |binary funtimes-9.1/funtimes/build/vignette.rds |binary funtimes-9.1/funtimes/inst/REFERENCES.bib | 11 funtimes-9.1/funtimes/inst/doc/beales.html | 141 +++++----- funtimes-9.1/funtimes/inst/doc/trendtests.html | 334 ++++++++++++------------- funtimes-9.1/funtimes/inst/doc/tsclusters.html | 148 +++++------ funtimes-9.1/funtimes/man/ARest.Rd | 28 +- funtimes-9.1/funtimes/man/GombayCPA_test.Rd | 6 funtimes-9.1/funtimes/man/causality_pred.Rd | 43 +-- funtimes-9.1/funtimes/man/causality_predVAR.Rd | 4 funtimes-9.1/funtimes/man/ccf_boot.Rd | 249 ++++++++++-------- funtimes-9.1/funtimes/man/funtimes-defunct.Rd | 23 + funtimes-9.1/funtimes/man/i.tails-defunct.Rd |only funtimes-9.1/funtimes/man/notrend_test.Rd | 26 - funtimes-9.1/funtimes/man/q.tails-defunct.Rd |only funtimes-9.1/funtimes/man/sync_test.Rd | 24 - funtimes-9.1/funtimes/man/tails_i.Rd |only funtimes-9.1/funtimes/man/tails_q.Rd |only funtimes-9.1/funtimes/man/wavk_test.Rd | 32 +- 38 files changed, 1230 insertions(+), 1158 deletions(-)
Title: The Exterior Calculus
Description: Provides functionality for working with tensors, alternating
forms, wedge products, Stokes's theorem, and related concepts
from the exterior calculus. Uses 'disordR' discipline
(Hankin, 2022, <doi:10.48550/ARXIV.2210.03856>). The
canonical reference would be M. Spivak
(1965, ISBN:0-8053-9021-9) "Calculus on Manifolds". To cite
the package in publications please use Hankin (2022)
<doi:10.48550/ARXIV.2210.17008>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between stokes versions 1.1-6 dated 2022-12-09 and 1.1-8 dated 2023-03-21
DESCRIPTION | 11 MD5 | 111 ++-- NEWS.md | 4 R/mult.R | 10 README.md | 2 build/partial.rdb |binary build/stokes.pdf |binary build/vignette.rds |binary data/exeyez.rda |only inst/CITATION | 6 inst/doc/Alt.R | 12 inst/doc/Alt.Rmd | 48 + inst/doc/Alt.html | 471 ++++------------- inst/doc/contract.R | 54 + inst/doc/contract.Rmd | 200 +++++++ inst/doc/contract.html | 564 +++++++++----------- inst/doc/dovs.html | 257 --------- inst/doc/dx.Rmd | 5 inst/doc/dx.html | 258 --------- inst/doc/ex.R |only inst/doc/ex.Rmd |only inst/doc/ex.html |only inst/doc/hodge.R | 25 inst/doc/hodge.Rmd | 83 ++ inst/doc/hodge.html | 334 +++--------- inst/doc/inner.html | 287 +--------- inst/doc/kinner.pdf |binary inst/doc/stokes.R | 8 inst/doc/stokes.Rmd | 37 - inst/doc/stokes.html | 803 +++++++++++------------------ inst/doc/vector_cross_product.R | 34 - inst/doc/vector_cross_product.Rmd | 101 +++ inst/doc/vector_cross_product.html | 332 +++-------- inst/doc/volume.Rmd | 5 inst/doc/volume.html | 239 -------- inst/doc/wedge.html | 305 +---------- inst/read.me |only man/Ops.Rd | 13 man/as.1form.Rd | 4 man/coeffs.Rd | 4 man/contract.Rd | 6 man/dovs.Rd | 6 man/dx.Rd | 8 man/ex.Rd |only man/kform.Rd | 13 man/ktensor.Rd | 4 man/print.Rd | 6 man/volume.Rd | 11 tests/testthat/test_alt.R | 1 tests/testthat/test_coeffs.R |only tests/testthat/test_kinner.R |only tests/testthat/test_misc.R | 10 tests/testthat/test_vector_cross_product.R |only vignettes/Alt.Rmd | 48 + vignettes/contract.Rmd | 200 +++++++ vignettes/dx.Rmd | 5 vignettes/ex.Rmd |only vignettes/hodge.Rmd | 83 ++ vignettes/stokes.Rmd | 37 - vignettes/stokes.bib |only vignettes/vector_cross_product.Rmd | 101 +++ vignettes/volume.Rmd | 5 62 files changed, 2136 insertions(+), 3035 deletions(-)
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins.
Author: Dan Carr <dcarr@voxel.galaxy.gmu.edu>, ported by Nicholas
Lewin-Koh and Martin Maechler <maechler@stat.math.ethz.ch>,
contains copies of lattice functions written by Deepayan Sarkar
<deepayan.sarkar@r-project.org>
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between hexbin versions 1.28.2 dated 2021-01-08 and 1.28.3 dated 2023-03-21
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/hexbin.s4.R | 4 ++-- R/smoothHexbin.R | 2 +- build/vignette.rds |binary inst/doc/hexagon_binning.pdf |binary man/erode.hexbin.Rd | 2 +- src/reg.c | 2 +- 9 files changed, 17 insertions(+), 17 deletions(-)
Title: A 'dplyr' Interface for Crunch
Description: In order to facilitate analysis of datasets hosted on the Crunch
data platform <https://crunch.io/>, the 'crplyr' package implements 'dplyr'
methods on top of the Crunch backend. The usual methods 'select', 'filter',
'group_by', 'summarize', and 'collect' are implemented in such a way as to
perform as much computation on the server and pull as little data locally
as possible.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Neal Richardson [aut],
Mike Malecki [aut],
Gordon Shotwell [aut],
Aljaž Sluga [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
Diff between crplyr versions 0.3.9 dated 2022-05-01 and 0.4.0 dated 2023-03-21
DESCRIPTION | 15 ++-- MD5 | 14 ++-- NAMESPACE | 1 NEWS.md | 3 R/plotting.R | 66 ++++++++++---------- build/vignette.rds |binary inst/doc/plotting.html | 160 +++++++++++++++++++++++++------------------------ man/autoplot.Rd | 18 ++--- 8 files changed, 146 insertions(+), 131 deletions(-)
Title: Load 'CDRC' Data
Description: A wrapper for the 'CDRC' 'API' that returns data frames or 'sf' of 'CDRC' data. The 'API' web reference is:<https://api.cdrc.ac.uk/swagger/index.html>.
Author: Alessia Calafiore [aut, cre]
Maintainer: Alessia Calafiore <aelissa3388@gmail.com>
Diff between cdrcR versions 0.1.0 dated 2023-02-02 and 0.1.1 dated 2023-03-21
DESCRIPTION | 8 MD5 | 26 +-- NAMESPACE | 14 - NEWS.md | 7 R/data.R | 32 +-- R/getCDRC.R | 445 +++++++++++++++++++++++++++---------------------------- R/globals.R | 2 R/listCDRC.R | 110 ++++++------- R/loginCDRC.R | 148 +++++++++--------- README.md | 267 ++++++++++++++++----------------- man/getCDRC.Rd | 74 ++++----- man/listCDRC.Rd | 40 ++-- man/liverpool.Rd | 56 +++--- man/loginCDRC.Rd | 58 +++---- 14 files changed, 647 insertions(+), 640 deletions(-)
Title: Viral Variant Location and Diversity
Description: Analysis of minor alleles in Illumina sequencing data of viral
genomes. Functions in 'vivaldi' primarily operate on vcf files.
Author: Marissa Knoll [aut],
Katherine Johnson [aut],
Megan Hockman [aut],
Eric Borenstein [aut],
Mohammed Khalfan [aut],
Elodie Ghedin [aut],
David Gresham [aut, cre, cph]
Maintainer: David Gresham <dg107@nyu.edu>
Diff between vivaldi versions 1.0.0 dated 2022-12-15 and 1.0.1 dated 2023-03-21
DESCRIPTION | 11 ++++------ MD5 | 22 ++++++++++----------- R/prepare_annotations.R | 2 - R/snv_location.R | 28 ++++++++++++++------------- README.md | 4 +-- inst/CITATION | 32 +++++++++++++++++++++---------- inst/doc/vignette.R | 25 +++++++++++------------- inst/doc/vignette.Rmd | 27 ++++++++++++-------------- inst/doc/vignette.html | 46 ++++++++++++++++----------------------------- man/prepare_annotations.Rd | 2 - man/snv_location.Rd | 27 +++++++++++++------------- vignettes/vignette.Rmd | 27 ++++++++++++-------------- 12 files changed, 126 insertions(+), 127 deletions(-)
Title: A Universal Non-Uniform Random Number Generator
Description: A universal non-uniform random number generator
for quite arbitrary distributions with piecewise twice
differentiable densities.
Author: Josef Leydold, Carsten Botts and Wolfgang H\"ormann
Maintainer: Josef Leydold <josef.leydold@wu.ac.at>
Diff between Tinflex versions 2.3 dated 2022-08-19 and 2.4 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 19 +++++++++++++------ R/sample.R | 4 ++-- R/setup.R | 4 ++-- R/setup_C.R | 2 +- build/partial.rdb |binary man/Tinflex-package.Rd | 4 ++-- 8 files changed, 31 insertions(+), 24 deletions(-)
More information about symbol.equation.gpt at CRAN
Permanent link
Title: A 'dplyr' Back End for Databases
Description: A 'dplyr' back end for databases that allows you to work with
remote database tables as if they are in-memory data frames. Basic
features works with any database that has a 'DBI' back end; more
advanced features require 'SQL' translation to be provided by the
package author.
Author: Hadley Wickham [aut, cre],
Maximilian Girlich [aut],
Edgar Ruiz [aut],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between dbplyr versions 2.3.1 dated 2023-02-24 and 2.3.2 dated 2023-03-21
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/backend-postgres-old.R | 10 ++++++++-- R/db-io.R | 4 ++-- R/db-sql.R | 10 +++++++--- R/verb-copy-to.R | 3 +-- build/dbplyr.pdf |binary inst/doc/dbplyr.html | 10 +++++----- inst/doc/new-backend.html | 2 +- inst/doc/reprex.html | 4 ++-- inst/doc/translation-function.html | 2 +- tests/testthat/_snaps/verb-joins.md | 35 ++--------------------------------- 13 files changed, 48 insertions(+), 66 deletions(-)
Title: Time-Based Joins to Analyze Sequences of Events
Description: Time-based joins to analyze sequence of events,
both in memory and out of memory. after_join() joins two
tables of events, while funnel_start() and funnel_step()
join events in the same table. With the type argument, you
can switch between different funnel types, like first-first
and last-firstafter.
Author: Emily Robinson [aut, cre],
Anthony Baker [aut],
David Robinson [aut],
Jacqueline Nolis [art]
Maintainer: Emily Robinson <robinson.es@gmail.com>
Diff between funneljoin versions 0.1.0 dated 2019-12-20 and 0.2.0 dated 2023-03-21
DESCRIPTION | 20 - MD5 | 31 +- NAMESPACE | 6 NEWS.md | 4 R/after_join.R | 9 R/summarize_funnel.R | 6 R/tbl-funnel-reclass.R | 36 -- README.md | 133 +++++---- build/vignette.rds |binary data/landed.rda |binary data/registered.rda |binary inst/doc/funneljoin.html | 586 ++++++++++++++++++++++++------------------ man/figures |only man/landed.Rd | 6 man/registered.Rd | 6 man/summarize_prop_tests.Rd | 3 tests/testthat/test_max_gap.R | 8 17 files changed, 473 insertions(+), 381 deletions(-)
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and
regression models.
Author: Max Kuhn [aut, cre] ,
Jed Wing [ctb],
Steve Weston [ctb],
Andre Williams [ctb],
Chris Keefer [ctb],
Allan Engelhardt [ctb],
Tony Cooper [ctb],
Zachary Mayer [ctb],
Brenton Kenkel [ctb],
R Core Team [ctb],
Michael Benesty [ctb],
Reynald Lescarbeau [ct [...truncated...]
Maintainer: Max Kuhn <mxkuhn@gmail.com>
Diff between caret versions 6.0-93 dated 2022-08-09 and 6.0-94 dated 2023-03-21
DESCRIPTION | 8 +- MD5 | 13 ++- R/heldout.R | 90 +++++++++++++------------- inst/CITATION |only inst/NEWS.Rd | 9 ++ inst/doc/caret.html | 124 ++++++++++++++++++------------------ inst/models/models.RData |binary tests/testthat/test_sparse_Matrix.R | 7 ++ 8 files changed, 137 insertions(+), 114 deletions(-)
Title: Estimators of Prediction Accuracy for Time-to-Event Data
Description: Provides a variety of functions to estimate
time-dependent true/false positive rates and AUC curves from a
set of censored survival data.
Author: Sergej Potapov, Werner Adler and Matthias Schmid.
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between survAUC versions 1.1-1 dated 2022-05-20 and 1.2-0 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 34 +++++++++++++++++----------------- NAMESPACE | 3 +-- NEWS.md | 4 ++++ R/BaggC.R | 4 ++-- R/IntegratedAUC.R | 2 +- R/UnoC.R | 2 +- R/survAUC_ChamDiao.R | 2 +- R/survAUC_HZ.R | 6 +++--- R/survAUC_HungChiang.R | 2 +- R/survAUC_Song_Zhou.R | 6 +++--- R/survAUC_Uno.R | 6 +++--- R/survFitCox.R | 13 +++++++------ R/surv_measures.R | 6 +++--- R/utils.R | 2 +- src/R_init_survAUC.c | 8 ++++++++ src/surv_measures.c | 4 ++-- src/surv_measures.h | 2 +- 18 files changed, 63 insertions(+), 51 deletions(-)
Title: Spatial Bayesian Factor Analysis
Description: Implements a spatial Bayesian non-parametric factor analysis model
with inference in a Bayesian setting using Markov chain Monte Carlo (MCMC).
Spatial correlation is introduced in the columns of the factor loadings
matrix using a Bayesian non-parametric prior, the probit stick-breaking
process. Areal spatial data is modeled using a conditional autoregressive
(CAR) prior and point-referenced spatial data is treated using a Gaussian
process. The response variable can be modeled as Gaussian, probit, Tobit, or
Binomial (using Polya-Gamma augmentation). Temporal correlation is
introduced for the latent factors through a hierarchical structure and can
be specified as exponential or first-order autoregressive. Full details of
the package can be found in the accompanying vignette. Furthermore, the
details of the package can be found in "Bayesian Non-Parametric Factor
Analysis for Longitudinal Spatial Surfaces", by Berchuck et al (2019),
<arXiv:1911.04337>. The paper is in press at the jo [...truncated...]
Author: Samuel I. Berchuck [aut, cre]
Maintainer: Samuel I. Berchuck <sib2@duke.edu>
Diff between spBFA versions 1.2 dated 2022-09-04 and 1.3 dated 2023-03-21
DESCRIPTION | 8 +-- MD5 | 6 +- inst/doc/spBFA-example.html | 115 +++++++++++++++++++++----------------------- src/MCMC_Samplers.cpp | 4 - 4 files changed, 66 insertions(+), 67 deletions(-)
Title: Pretty Time of Day
Description: Implements an S3 class for storing and formatting time-of-day
values, based on the 'difftime' class.
Author: Kirill Mueller [aut, cre] ,
R Consortium [fnd],
RStudio [fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between hms versions 1.1.2 dated 2022-08-19 and 1.1.3 dated 2023-03-21
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- NAMESPACE | 1 - NEWS.md | 13 ++++++++++++- R/hms.R | 7 +++---- man/hms.Rd | 2 +- 6 files changed, 28 insertions(+), 19 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.13.0 dated 2023-03-14 and 1.13.1 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 8 ++++++++ inst/csv/replacementPatterns.csv | 2 ++ inst/doc/UsingSqlRender.pdf |binary tests/testthat/test-translate-netezza.R | 10 ++++++++++ 6 files changed, 29 insertions(+), 9 deletions(-)
More information about occupationMeasurement at CRAN
Permanent link
Title: Grammar of Graphics for Linear Model Diagnostic Plots
Description: Allows for easy creation of diagnostic plots for a variety of model objects using the Grammar of Graphics.
Provides functionality for both individual diagnostic plots and an array of four standard diagnostic plots.
Author: Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between gglm versions 1.0.1 dated 2023-02-15 and 1.0.2 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- R/gglm.R | 2 +- 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Create Images of Volumetric Brain Data in NIfTI Format Using
'ggplot2' Syntax
Description: A 'ggplot2'-consistent approach to generating 2D displays of volumetric brain imaging data.
Display data from multiple NIfTI images using standard 'ggplot2' conventions such scales, limits, and
themes to control the appearance of displays. The resulting plots are returned as 'patchwork' objects,
inheriting from 'ggplot', allowing for any standard modifications of display aesthetics supported by 'ggplot2'.
Author: Michael Hallquist [aut, cre]
Maintainer: Michael Hallquist <michael.hallquist@gmail.com>
Diff between ggbrain versions 0.8.0 dated 2022-11-04 and 0.8.1 dated 2023-03-21
DESCRIPTION | 10 ++-- MD5 | 48 ++++++++++---------- NAMESPACE | 2 NEWS.md | 16 ++++++ R/ggb.R | 40 +++++++++++------ R/ggbrain_images.R | 18 +++++-- R/ggbrain_label.R | 37 +++++++++++---- R/ggbrain_layer.R | 30 ++++++++++-- R/ggbrain_layer_outline.R | 70 +++++++++++++++++++++-------- R/ggbrain_panel.R | 4 - R/sugar.R | 25 ++++++---- inst/doc/ggbrain_aesthetics.html | 22 +++------ inst/doc/ggbrain_introduction.Rmd | 8 +-- inst/doc/ggbrain_introduction.html | 87 +++++++++++++++++-------------------- inst/doc/ggbrain_labels.html | 16 ++---- man/geom_outline.Rd | 5 +- man/geom_region_label.Rd | 4 + man/geom_region_label_repel.Rd | 4 + man/geom_region_text.Rd | 4 + man/geom_region_text_repel.Rd | 4 + man/ggbrain_label.Rd | 5 ++ man/ggbrain_layer_outline.Rd | 5 ++ src/Makevars | 2 src/Makevars.win | 2 vignettes/ggbrain_introduction.Rmd | 8 +-- 25 files changed, 297 insertions(+), 179 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.10.18 dated 2023-03-08 and 0.10.20 dated 2023-03-21
DESCRIPTION | 8 ++-- MD5 | 69 +++++++++++++++++++------------------- NAMESPACE | 1 R/resolve.R | 27 ++++++++++++++ build/vignette.rds |binary inst/doc/yamlet-introduction.html | 5 +- man/as.data.frame.dvec.Rd | 1 man/as_dvec.Rd | 1 man/as_dvec.character.Rd | 1 man/as_dvec.complex.Rd | 1 man/as_dvec.dvec.Rd | 1 man/as_dvec.integer.Rd | 1 man/as_dvec.logical.Rd | 1 man/as_dvec.numeric.Rd | 1 man/c.dvec.Rd | 1 man/classified.dvec.Rd | 1 man/desolve.Rd | 1 man/desolve.classified.Rd | 1 man/desolve.decorated.Rd | 1 man/desolve.dvec.Rd | 2 + man/explicit_guide.data.frame.Rd | 1 man/format.dvec.Rd | 1 man/implicit_guide.dvec.Rd | 1 man/length.dvec.Rd | 1 man/print.dvec.Rd | 1 man/resolve.Rd | 1 man/resolve.classified.Rd |only man/resolve.decorated.Rd | 1 man/resolve.dvec.Rd | 2 + man/sub-.dvec.Rd | 1 man/sub-sub-.dvec.Rd | 1 man/sub-subset-.dvec.Rd | 1 man/subset-.dvec.Rd | 1 man/unclassified.dvec.Rd | 1 tests/testthat/Rplots.pdf |binary tests/testthat/test-dvec.R | 6 +++ 36 files changed, 105 insertions(+), 40 deletions(-)
Title: Utility Functions for Forest Inventory Estimation and Analysis
Description: A set of tools for data wrangling, spatial data analysis,
statistical modeling (including direct, model-assisted, photo-based, and
small area tools), and USDA Forest Service data base tools. These tools are
aimed to help Foresters, Analysts, and Scientists extract and perform
analyses on USDA Forest Service data.
Author: Tracey Frescino [aut],
Chris Toney [aut],
Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTAutils versions 1.1.4 dated 2022-11-28 and 1.1.5 dated 2023-03-21
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Title: Diagnostic Index Expectation Maximisation in R
Description: Likelihood-based genome polarisation finds which alleles of genomic markers
belong to which side of the barrier.
Co-estimates which individuals belong to either side of the barrier and barrier strength.
Uses expectation maximisation in likelihood framework. The method is described in
Baird et al. (2022) <doi:10.1111/2041-210X.14010>.
Author: Natalia Martinkova [aut, cre] ,
Stuart Baird [aut]
Maintainer: Natalia Martinkova <martinkova@ivb.cz>
Diff between diemr versions 1.1.1 dated 2023-02-02 and 1.2 dated 2023-03-21
DESCRIPTION | 10 ++-- MD5 | 25 +++++++--- NAMESPACE | 5 ++ NEWS.md | 11 ++++ R/diem.r | 2 R/extdata.r |only R/vcf2diem.r |only build/vignette.rds |binary inst/CITATION | 10 ++-- inst/doc/Importing-data-for-genome-polarisation.R |only inst/doc/Importing-data-for-genome-polarisation.Rmd |only inst/doc/Importing-data-for-genome-polarisation.html |only inst/doc/diemr-diagnostic-index-expecation-maximisation-in-r.html | 4 - inst/extdata/myotis.vcf |only man/myotis.Rd |only man/vcf2diem.Rd |only tests/testthat/_snaps |only tests/testthat/test_vcf2diem.r |only vignettes/Importing-data-for-genome-polarisation.Rmd |only 19 files changed, 46 insertions(+), 21 deletions(-)
Title: Initiation à La Statistique Avec R
Description: Datasets and functions for the book "Initiation à la Statistique avec R", F. Bertrand and M. Maumy-Bertrand (2022, ISBN:978-2100782826 Dunod, fourth edition).
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between BioStatR versions 4.0.0 dated 2022-11-28 and 4.0.1 dated 2023-03-21
DESCRIPTION | 10 +++---- MD5 | 66 +++++++++++++++++++++++------------------------ NEWS.md | 4 ++ R/BioStatR-package.R | 6 ++-- R/binom.ci.R | 2 - R/cvar.R | 2 - R/datasets.R | 10 +++---- R/eta2.R | 2 - R/panel.hist.R | 2 - R/plotcdf2.R | 2 - R/poi.ci.R | 2 - demo/Chapitre1.R | 44 ++++++++----------------------- demo/Chapitre10.R | 53 +++++++++++++++++++------------------ demo/Chapitre2.R | 37 ++++++++++++++------------ demo/Chapitre3.R | 15 ++++++---- demo/Chapitre4.R | 33 ++++++++++++----------- demo/Chapitre5.R | 70 +++++++++++++++++++++++++------------------------- demo/Chapitre6.R | 57 ++++++++++++++++++++-------------------- demo/Chapitre7.R | 58 ++++++++++++++++++++--------------------- demo/Chapitre8.R | 24 ++++++++--------- demo/Chapitre9.R | 61 ++++++++++++++++++++++--------------------- inst/CITATION | 16 +++++------ man/BioStatR.Rd | 6 ++-- man/Europe.Rd | 2 - man/Extrait_Taille.Rd | 2 - man/Mesures.Rd | 2 - man/Mesures5.Rd | 2 - man/Quetelet.Rd | 2 - man/binom.ci.Rd | 2 - man/cvar.Rd | 2 - man/eta2.Rd | 2 - man/panel.hist.Rd | 2 - man/plotcdf2.Rd | 2 - man/poi.ci.Rd | 2 - 34 files changed, 299 insertions(+), 305 deletions(-)
Title: Curriculum Vitae for R Markdown
Description: Provides templates and functions to simplify the production and maintenance of curriculum vitae.
Author: Mitchell O'Hara-Wild [aut, cre]
,
Rob Hyndman [aut] ,
Yihui Xie [ctb] ,
Albert Krewinkel [cph] ,
JooYoung Seo [ctb] ,
Isabelle Greco [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between vitae versions 0.5.2 dated 2022-09-01 and 0.5.3 dated 2023-03-21
DESCRIPTION | 16 MD5 | 76 ++-- NEWS.md | 14 R/bibliography.R | 2 R/brief.R | 2 R/csl_date.R | 4 R/csl_name.R | 2 R/detailed.R | 2 README.md | 104 +---- inst/doc/data.Rmd | 23 - inst/doc/data.html | 184 ++++------ inst/doc/extending.html | 111 ++---- inst/doc/vitae.Rmd | 10 inst/doc/vitae.html | 141 +++---- inst/rmarkdown/templates/awesomecv/resources/awesome-cv.tex | 7 inst/rmarkdown/templates/awesomecv/skeleton/awesome-cv.cls | 12 inst/rmarkdown/templates/awesomecv/skeleton/skeleton.Rmd | 10 inst/rmarkdown/templates/hyndman/resources/hyndmantemplate.tex | 2 inst/rmarkdown/templates/hyndman/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/latexcv/resources/classic/main.tex | 4 inst/rmarkdown/templates/latexcv/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/markdowncv/resources/markdowncv.html | 4 inst/rmarkdown/templates/markdowncv/skeleton/skeleton.Rmd | 10 inst/rmarkdown/templates/moderncv/resources/moderncv.tex | 4 inst/rmarkdown/templates/moderncv/skeleton/moderncv.cls | 10 inst/rmarkdown/templates/moderncv/skeleton/moderncvfooti.sty | 1 inst/rmarkdown/templates/moderncv/skeleton/moderncvheadi.sty | 1 inst/rmarkdown/templates/moderncv/skeleton/moderncvheadii.sty | 1 inst/rmarkdown/templates/moderncv/skeleton/moderncvheadiii.sty | 3 inst/rmarkdown/templates/moderncv/skeleton/moderncvheadiv.sty | 2 inst/rmarkdown/templates/moderncv/skeleton/moderncvheadv.sty | 2 inst/rmarkdown/templates/twentyseconds/resources/twentysecondstemplate.tex | 4 inst/rmarkdown/templates/twentyseconds/skeleton/skeleton.Rmd | 1 inst/rmarkdown/templates/twentyseconds/skeleton/twentysecondcv.cls | 8 man/reexports.Rd | 2 man/vitae-package.Rd | 1 vignettes/data.Rmd | 23 - vignettes/sample.txt | 16 vignettes/vitae.Rmd | 10 39 files changed, 376 insertions(+), 455 deletions(-)
Title: Isotopic Tracer Analysis Using MCMC
Description: Implements Bayesian models to analyze data from tracer addition
experiments. The implemented method was originally described in the article
"A New Method to Reconstruct Quantitative Food Webs and Nutrient Flows from
Isotope Tracer Addition Experiments" by López-Sepulcre et al. (2020)
<doi:10.1086/708546>.
Author: Andres Lopez-Sepulcre [aut] ,
Matthieu Bruneaux [aut, cre]
Maintainer: Matthieu Bruneaux <matthieu.bruneaux@gmail.com>
Diff between isotracer versions 1.1.3 dated 2022-03-27 and 1.1.4 dated 2023-03-21
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Title: Analysis of NCES Education Survey and Assessment Data
Description: Read in and analyze functions for education survey and assessment data from the National Center for Education Statistics (NCES) <https://nces.ed.gov/>, including National Assessment of Educational Progress (NAEP) data <https://nces.ed.gov/nationsreportcard/> and data from the International Assessment Database: Organisation for Economic Co-operation and Development (OECD) <https://www.oecd.org/>, including Programme for International Student Assessment (PISA), Teaching and Learning International Survey (TALIS), Programme for the International Assessment of Adult Competencies (PIAAC), and International Association for the Evaluation of Educational Achievement (IEA) <https://www.iea.nl/>, including Trends in International Mathematics and Science Study (TIMSS), TIMSS Advanced, Progress in International Reading Literacy Study (PIRLS), International Civic and Citizenship Study (ICCS), International Computer and Information Literacy Study (ICILS), and Civic Education S [...truncated...]
Author: Paul Bailey [aut, cre],
Ahmad Emad [aut],
Huade Huo [aut],
Michael Lee [aut],
Yuqi Liao [aut],
Alex Lishinski [aut],
Trang Nguyen [aut],
Qingshu Xie [aut],
Jiao Yu [aut],
Ting Zhang [aut],
Eric Buehler [aut],
person,
person),
Jeppe Bundsgaard [ctb],
[...truncated...]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between EdSurvey versions 3.0.2 dated 2023-01-11 and 3.1.0 dated 2023-03-21
EdSurvey-3.0.2/EdSurvey/R/merge.light.edsurvey.data.frame.R |only EdSurvey-3.0.2/EdSurvey/man/examples/merge.light.edsurvey.data.frame.R |only EdSurvey-3.0.2/EdSurvey/man/merge.Rd |only EdSurvey-3.1.0/EdSurvey/DESCRIPTION | 13 EdSurvey-3.1.0/EdSurvey/MD5 | 90 - EdSurvey-3.1.0/EdSurvey/NAMESPACE | 7 EdSurvey-3.1.0/EdSurvey/R/achievementLevels.R | 179 --- EdSurvey-3.1.0/EdSurvey/R/all.R | 2 EdSurvey-3.1.0/EdSurvey/R/descriptionOfFile.R | 7 EdSurvey-3.1.0/EdSurvey/R/edsurvey.data.frame.R | 47 EdSurvey-3.1.0/EdSurvey/R/getData.R | 509 ++++++---- EdSurvey-3.1.0/EdSurvey/R/glm.sdf.R | 19 EdSurvey-3.1.0/EdSurvey/R/lm.sdf.R | 10 EdSurvey-3.1.0/EdSurvey/R/merge.sdf.R |only EdSurvey-3.1.0/EdSurvey/R/mergev.R | 2 EdSurvey-3.1.0/EdSurvey/R/mml.scoreNAEP.R | 81 - EdSurvey-3.1.0/EdSurvey/R/parseScript_SPSS.R |only EdSurvey-3.1.0/EdSurvey/R/print.edsurvey.data.frame.R | 12 EdSurvey-3.1.0/EdSurvey/R/readNAEP.r | 216 ++-- EdSurvey-3.1.0/EdSurvey/R/readNAEP_XML.R |only EdSurvey-3.1.0/EdSurvey/R/readPISA.R | 5 EdSurvey-3.1.0/EdSurvey/R/readUTILS.R | 7 EdSurvey-3.1.0/EdSurvey/R/rq.sdf.R | 6 EdSurvey-3.1.0/EdSurvey/R/searchSDF.R | 31 EdSurvey-3.1.0/EdSurvey/R/utilities.R | 20 EdSurvey-3.1.0/EdSurvey/R/zzz.R | 2 EdSurvey-3.1.0/EdSurvey/inst/NEWS.Rd | 20 EdSurvey-3.1.0/EdSurvey/inst/doc/introduction.html | 4 EdSurvey-3.1.0/EdSurvey/man/edsurvey-class.Rd | 12 EdSurvey-3.1.0/EdSurvey/man/examples/merge.edsurvey.data.frame.R |only EdSurvey-3.1.0/EdSurvey/man/merge.edsurvey.data.Rd |only EdSurvey-3.1.0/EdSurvey/man/mergev.Rd | 2 EdSurvey-3.1.0/EdSurvey/man/parseScript_SPSS.Rd |only EdSurvey-3.1.0/EdSurvey/man/readNAEP.Rd | 11 EdSurvey-3.1.0/EdSurvey/man/scoreDefault.Rd | 74 - EdSurvey-3.1.0/EdSurvey/man/searchSDF.Rd | 2 EdSurvey-3.1.0/EdSurvey/tests/testthat/REF-2-esdfl.R | 8 EdSurvey-3.1.0/EdSurvey/tests/testthat/REF-3-TIMSS.R | 226 ++-- EdSurvey-3.1.0/EdSurvey/tests/testthat/TIMSSgd3.rds |binary EdSurvey-3.1.0/EdSurvey/tests/testthat/gddat.rds |binary EdSurvey-3.1.0/EdSurvey/tests/testthat/lm1re.rds |binary EdSurvey-3.1.0/EdSurvey/tests/testthat/lm1t.rds |binary EdSurvey-3.1.0/EdSurvey/tests/testthat/lm2t.rds |binary EdSurvey-3.1.0/EdSurvey/tests/testthat/test-05-mergev.R | 2 EdSurvey-3.1.0/EdSurvey/tests/testthat/test-07-merge.R |only EdSurvey-3.1.0/EdSurvey/tests/testthat/test-10-main.R | 136 +- EdSurvey-3.1.0/EdSurvey/tests/testthat/test-15-lesdf.R | 6 EdSurvey-3.1.0/EdSurvey/tests/testthat/test-20-esdfl.R | 1 EdSurvey-3.1.0/EdSurvey/tests/testthat/test-25-mixed.R | 6 EdSurvey-3.1.0/EdSurvey/tests/testthat/test-30-TIMSS.R | 241 ++-- EdSurvey-3.1.0/EdSurvey/tests/testthat/test-90-merge.R |only EdSurvey-3.1.0/EdSurvey/tests/testthat/test-95-parseScript_SPSS.R |only 52 files changed, 1115 insertions(+), 901 deletions(-)
Title: Functions to Support the ICES Transparent Assessment Framework
Description: Functions to support the ICES Transparent Assessment Framework
<https://taf.ices.dk> to organize data, methods, and results used in ICES
assessments. ICES is an organization facilitating international collaboration
in marine science.
Author: Colin Millar [aut, cre],
Arni Magnusson [aut],
Alexandros Kokkalis [ctb],
Iago Mosqueira [ctb],
Ibrahim Umar [ctb],
Hjalte Parner [ctb]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesTAF versions 4.1.0 dated 2023-01-23 and 4.2.0 dated 2023-03-21
DESCRIPTION | 8 MD5 | 42 +-- NAMESPACE | 12 NEWS.md | 18 + R/TAF.R | 52 +++- R/add.data.script.R | 17 - R/download.analysis.R | 1 R/draft.data.script.R | 16 - R/icesTAF-package.R | 4 R/run.analysis.R | 4 R/taf.roxygenise.R | 22 - R/taf.skeleton.sa.org.R | 4 man/add.data.script.Rd | 15 - man/dir.tree.Rd | 54 ++-- man/download.analysis.Rd | 64 ++--- man/draft.data.script.Rd | 14 - man/icesTAF-package.Rd | 4 man/run.analysis.Rd | 60 ++-- man/taf-reexports.Rd | 564 +++++++++++++++++++++++---------------------- man/taf.colors.Rd | 76 +++--- man/taf.roxygenise.Rd | 12 man/taf.skeleton.sa.org.Rd | 68 ++--- 22 files changed, 603 insertions(+), 528 deletions(-)
Title: Arrange 'Grobs' in Tables
Description: Tools to make it easier to work with "tables" of
'grobs'. The 'gtable' package defines a 'gtable' grob class that specifies a
grid along with a list of grobs and their placement in the grid. Further the
package makes it easy to manipulate and combine 'gtable' objects so that
complex compositions can be built up sequentially.
Author: Hadley Wickham [aut],
Thomas Lin Pedersen [aut, cre],
Posit Software, PBC [cph]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between gtable versions 0.3.2 dated 2023-03-17 and 0.3.3 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ inst/doc/profiling.html | 4 ++-- 4 files changed, 13 insertions(+), 9 deletions(-)
Title: Sparse Cholesky LDL Decomposition of Symmetric Matrices
Description: 'C++' implementation of sparse LDL decomposition of symmetric matrices and solvers described by Timothy A. Davis (2016)
<https://fossies.org/linux/SuiteSparse/LDL/Doc/ldl_userguide.pdf>. Provides a set of C++ classes for basic sparse
matrix specification and linear algebra, and a class to implement sparse LDL decomposition and solvers. See <https://github.com/samuel-watson/SparseChol>
for details.
Author: Sam Watson [aut, cre],
Timothy A. Davis [aut, ctb]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
Diff between SparseChol versions 0.1.1 dated 2022-09-19 and 0.2.1 dated 2023-03-21
DESCRIPTION | 14 ++--- MD5 | 31 ++++++----- R/RcppExports.R | 56 +++++++++++++++++---- R/matrix.R | 4 - build/partial.rdb |binary inst/include/SparseChol.h | 121 +++++++++++++++++++++++----------------------- inst/include/sparse.h |only man/LDL_Cholesky.Rd | 36 ++++++------- man/LL_Cholesky.Rd | 36 ++++++------- man/dense_to_sparse.Rd |only man/sparse_D.Rd | 36 ++++++------- man/sparse_L.Rd | 36 ++++++------- man/sparse_chol.Rd | 33 ++++-------- man/sparse_chol_crs.Rd |only src/Makevars | 14 ----- src/Makevars.win | 14 ----- src/RcppExports.cpp | 34 +++++++++++- src/chol.cpp | 89 +++++++++++++++++++++++++++------ 18 files changed, 323 insertions(+), 231 deletions(-)
Title: A Set of Common Tools for Seasonal to Decadal Verification
Description: The advanced version of package 's2dverification'. It is
intended for 'seasonal to decadal' (s2d) climate forecast verification, but
it can also be used in other kinds of forecasts or general climate analysis.
This package is specially designed for the comparison between the experimental
and observational datasets. The functionality of the included functions covers
from data retrieval, data post-processing, skill scores against observation,
to visualization. Compared to 's2dverification', 's2dv' is more compatible
with the package 'startR', able to use multiple cores for computation and
handle multi-dimensional arrays with a higher flexibility. The CDO version used
in development is 1.9.8.
Author: BSC-CNS [aut, cph],
An-Chi Ho [aut, cre],
Nuria Perez-Zanon [aut],
Roberto Bilbao [ctb],
Josep Cos [ctb],
Carlos Delgado [ctb],
Llorenc Lledo [ctb],
Andrea Manrique [ctb],
Deborah Verfaillie [ctb],
Eva Rifa [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between s2dv versions 1.3.0 dated 2022-10-18 and 1.4.0 dated 2023-03-21
DESCRIPTION | 8 - MD5 | 74 +++++----- NAMESPACE | 2 NEWS.md | 23 +++ R/AMV.R | 8 - R/AbsBiasSS.R | 11 - R/CDORemap.R | 17 +- R/CRPSS.R | 29 +++- R/Corr.R | 80 +++++++---- R/DiffCorr.R | 2 R/GMST.R | 4 R/GSAT.R | 4 R/NAO.R | 54 ++++--- R/ProjectField.R | 10 + R/RMS.R | 14 +- R/RMSSS.R | 347 +++++++++++++++++++++++++++++++++++++++----------- R/ROCSS.R |only R/RPS.R | 82 +---------- R/RPSS.R | 25 ++- R/RandomWalkTest.R | 186 ++++++++++++++++++++------ R/Reorder.R | 48 +++++- R/ResidualCorr.R | 3 R/SPOD.R | 8 - R/Season.R | 25 ++- R/TPI.R | 12 - R/Trend.R | 6 R/Utils.R | 90 ++++++++++++ R/clim.palette.R | 30 +++- man/Corr.Rd | 23 ++- man/NAO.Rd | 10 - man/RMSSS.Rd | 57 ++++++-- man/ROCSS.Rd |only man/RPS.Rd | 5 man/RPSS.Rd | 5 man/RandomWalkTest.Rd | 105 +++++++++++---- man/Reorder.Rd | 15 +- man/Season.Rd | 17 +- man/Trend.Rd | 4 man/clim.palette.Rd | 5 39 files changed, 1033 insertions(+), 415 deletions(-)
Title: Propensity Score Analysis Graphics
Description: A collection of functions that primarily produce graphics to
aid in a Propensity Score Analysis (PSA). Functions include: cat.psa
and box.psa to test balance within strata of categorical and
quantitative covariates, circ.psa for a representation of the
estimated effect size by stratum, loess.psa that provides a graphic
and loess based effect size estimate, and various balance functions
that provide measures of the balance achieved via a PSA in a
categorical covariate.
Author: James Helmreich [aut],
Robert Pruzek [aut],
Jason Bryer [ctb, cre] ,
KuangNan Xiong [ctb]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between PSAgraphics versions 2.1.1.2 dated 2022-08-24 and 2.1.2 dated 2023-03-21
PSAgraphics-2.1.1.2/PSAgraphics/man/PSAgraphics-package.Rd |only PSAgraphics-2.1.2/PSAgraphics/DESCRIPTION | 51 PSAgraphics-2.1.2/PSAgraphics/MD5 | 60 - PSAgraphics-2.1.2/PSAgraphics/NAMESPACE | 46 PSAgraphics-2.1.2/PSAgraphics/NEWS.md |only PSAgraphics-2.1.2/PSAgraphics/R/PSAgraphics-package.R |only PSAgraphics-2.1.2/PSAgraphics/R/bal.cs.psa.R | 221 ++-- PSAgraphics-2.1.2/PSAgraphics/R/bal.fe.psa.R | 108 +- PSAgraphics-2.1.2/PSAgraphics/R/bal.ks.psa.R | 84 + PSAgraphics-2.1.2/PSAgraphics/R/bal.ms.psa.R | 173 ++- PSAgraphics-2.1.2/PSAgraphics/R/box.psa.R | 393 +++++-- PSAgraphics-2.1.2/PSAgraphics/R/cat.psa.R | 454 +++++--- PSAgraphics-2.1.2/PSAgraphics/R/circ.psa.R | 650 ++++++++---- PSAgraphics-2.1.2/PSAgraphics/R/cstrata.psa.R | 393 +++++-- PSAgraphics-2.1.2/PSAgraphics/R/cv.bal.psa.R | 603 +++++++---- PSAgraphics-2.1.2/PSAgraphics/R/cv.trans.psa.R | 252 ++-- PSAgraphics-2.1.2/PSAgraphics/R/loess.psa.R | 682 +++++++++---- PSAgraphics-2.1.2/PSAgraphics/README.md |only PSAgraphics-2.1.2/PSAgraphics/data/lindner.rda |binary PSAgraphics-2.1.2/PSAgraphics/inst/CITATION | 20 PSAgraphics-2.1.2/PSAgraphics/man/bal.cs.psa.Rd | 145 +- PSAgraphics-2.1.2/PSAgraphics/man/bal.fe.psa.Rd | 110 +- PSAgraphics-2.1.2/PSAgraphics/man/bal.ks.psa.Rd | 88 - PSAgraphics-2.1.2/PSAgraphics/man/bal.ms.psa.Rd | 147 +- PSAgraphics-2.1.2/PSAgraphics/man/box.psa.Rd | 201 ++- PSAgraphics-2.1.2/PSAgraphics/man/cat.psa.Rd | 212 ++-- PSAgraphics-2.1.2/PSAgraphics/man/circ.psa.Rd | 296 +++-- PSAgraphics-2.1.2/PSAgraphics/man/cstrata.psa.Rd | 114 +- PSAgraphics-2.1.2/PSAgraphics/man/cv.bal.psa.Rd | 216 ++-- PSAgraphics-2.1.2/PSAgraphics/man/cv.trans.psa.Rd | 51 PSAgraphics-2.1.2/PSAgraphics/man/figures |only PSAgraphics-2.1.2/PSAgraphics/man/granova-package.Rd |only PSAgraphics-2.1.2/PSAgraphics/man/lindner.Rd | 122 +- PSAgraphics-2.1.2/PSAgraphics/man/loess.psa.Rd | 242 ++-- 34 files changed, 4079 insertions(+), 2055 deletions(-)
Title: Machine Learning Models and Tools
Description: Meta-package for statistical and machine learning with a unified
interface for model fitting, prediction, performance assessment, and
presentation of results. Approaches for model fitting and prediction of
numerical, categorical, or censored time-to-event outcomes include
traditional regression models, regularization methods, tree-based methods,
support vector machines, neural networks, ensembles, data preprocessing,
filtering, and model tuning and selection. Performance metrics are provided
for model assessment and can be estimated with independent test sets, split
sampling, cross-validation, or bootstrap resampling. Resample estimation
can be executed in parallel for faster processing and nested in cases of
model tuning and selection. Modeling results can be summarized with
descriptive statistics; calibration curves; variable importance; partial
dependence plots; confusion matrices; and ROC, lift, and other performance
curves.
Author: Brian J Smith [aut, cre]
Maintainer: Brian J Smith <brian-j-smith@uiowa.edu>
Diff between MachineShop versions 3.6.1 dated 2023-02-01 and 3.6.2 dated 2023-03-21
DESCRIPTION | 8 MD5 | 18 NEWS.md | 5 R/MLModel.R | 4 R/recipe_roles.R | 39 R/utils.R | 2 inst/doc/MLModels.html | 252 -- inst/doc/UserGuide.html | 4830 +++++++++++++++------------------------ tests/testthat/Rplots.pdf |binary tests/testthat/test-survival.txt | 3974 ++++++++++++++++---------------- 10 files changed, 4026 insertions(+), 5106 deletions(-)
Title: Diagnostic Ability Assessment with Right-Censored Data at a
Fixed Time t
Description: We focus on the diagnostic ability assessment of medical tests when the outcome of interest is the status (alive or dead) of the subjects at a certain time-point t. This binary status is determined by right-censored times to event and it is missing for those subjects censored before t. Here we provide three methods (missing exclusion, imputation of censored times and using time-dependent ROC curves) to evaluate the diagnostic ability of binary and continuous tests in this context. Two references for the methods used here are Skaltsa et al. (2010) <doi:10.1002/bimj.200900294> and Heagerty et al. (2000) <doi:10.1111/j.0006-341x.2000.00337.x>.
Author: Sara Perez-Jaume [aut, cre],
Josep L Carrasco [aut]
Maintainer: Sara Perez-Jaume <spjaume@gmail.com>
Diff between ThresholdROCsurvival versions 1.0.3 dated 2022-11-27 and 1.1.0 dated 2023-03-21
ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/R/AUC_ICT.R |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/R/AUC_ME.R |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/R/th_ICT.R |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/R/th_ME.R |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/R/th_survivalROC.R |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/man/AUC_ICT.Rd |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/man/AUC_ME.Rd |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/man/th_ICT.Rd |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/man/th_ME.Rd |only ThresholdROCsurvival-1.0.3/ThresholdROCsurvival/man/th_survivalROC.Rd |only ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/DESCRIPTION | 14 +-- ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/MD5 | 21 +--- ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/NAMESPACE | 9 -- ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/R/auxiliars.R | 44 +++++++++- ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/R/diagnosticAssessment.R |only ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/man/ThresholdROCsurvival-package.Rd | 6 - ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/man/diagnostic_assessment_binary.Rd |only ThresholdROCsurvival-1.1.0/ThresholdROCsurvival/man/diagnostic_assessment_continuous.Rd |only 18 files changed, 62 insertions(+), 32 deletions(-)
More information about ThresholdROCsurvival at CRAN
Permanent link
Title: List, Query, Manipulate System Processes
Description: List, query and manipulate all system processes, on
'Windows', 'Linux' and 'macOS'.
Author: Jay Loden [aut],
Dave Daeschler [aut],
Giampaolo Rodola' [aut],
Gabor Csardi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between ps versions 1.7.2 dated 2022-10-26 and 1.7.3 dated 2023-03-21
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 6 ++++++ R/disk.R | 2 -- R/linux.R | 2 +- R/system.R | 1 - src/api-macos.c | 2 ++ src/macos.c | 2 +- src/windows.c | 2 +- 9 files changed, 22 insertions(+), 17 deletions(-)
Title: Tool Suite to Investigate Other Packages
Description: Helps investigating other packages during code review by looking
at their dependencies.
Author: Maarten van Kessel [aut, cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between DependencyReviewer versions 1.2.2 dated 2023-03-16 and 1.2.3 dated 2023-03-21
DESCRIPTION | 6 - MD5 | 22 ++-- R/checkDependencies.R | 10 +- R/getDefaultPermittedPackages.R | 103 +++++++++++++--------- R/getGraphData.R | 14 ++ inst/doc/Documentation.R | 10 +- inst/doc/Documentation.Rmd | 8 + inst/doc/Documentation.pdf |binary tests/testthat/test-checkDependencies.R | 1 tests/testthat/test-getDefaultPermittedPackages.R | 1 tests/testthat/test-getGraphData.R | 3 vignettes/Documentation.Rmd | 8 + 12 files changed, 119 insertions(+), 67 deletions(-)
More information about DependencyReviewer at CRAN
Permanent link
Title: Visualize Downloads from 'CRAN' Packages
Description: Visualize the trends and historical downloads from packages in the 'CRAN' repository. Data is obtained by using the 'API' to query the database from the 'RStudio' 'CRAN' mirror.
Author: Marcelo Ponce [aut, cre]
Maintainer: Marcelo Ponce <m.ponce@utoronto.ca>
Diff between Visualize.CRAN.Downloads versions 1.0.2 dated 2023-01-07 and 1.0.3 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 7 +++++-- R/plotting-utils.R | 8 +++++--- inst/doc/Visualize.CRAN.Downloads.html | 10 +++++----- 5 files changed, 23 insertions(+), 18 deletions(-)
More information about Visualize.CRAN.Downloads at CRAN
Permanent link
Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more information see (1) "kmeans++ the advantages of the k-means++ algorithm" by David Arthur and Sergei Vassilvitskii (2007), Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete algorithms, Society for Industrial and Applied Mathematics, Philadelphia, PA, USA, pp. 1027-1035, <http://ilpubs.stanford.edu:8090/778/1/2006-13.pdf>, and (2) "The Effectiveness of Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval Rabani, Leonard J. Schulman and Chaitanya Swamy <doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.3.5 dated 2022-08-28 and 0.3.8 dated 2023-03-21
tglkmeans-0.3.5/tglkmeans/src/Makevars |only tglkmeans-0.3.8/tglkmeans/DESCRIPTION | 15 tglkmeans-0.3.8/tglkmeans/MD5 | 33 tglkmeans-0.3.8/tglkmeans/NEWS.md | 6 tglkmeans-0.3.8/tglkmeans/R/tests.R | 2 tglkmeans-0.3.8/tglkmeans/README.md | 72 tglkmeans-0.3.8/tglkmeans/inst/doc/usage.R | 105 - tglkmeans-0.3.8/tglkmeans/inst/doc/usage.Rmd | 105 - tglkmeans-0.3.8/tglkmeans/inst/doc/usage.html | 1221 +++++++++++-- tglkmeans-0.3.8/tglkmeans/man/TGL_kmeans.Rd | 2 tglkmeans-0.3.8/tglkmeans/man/TGL_kmeans_tidy.Rd | 2 tglkmeans-0.3.8/tglkmeans/src/KMeans.cpp | 2 tglkmeans-0.3.8/tglkmeans/src/KMeansCenterMean.cpp | 2 tglkmeans-0.3.8/tglkmeans/src/KMeansCenterMeanEuclid.cpp | 2 tglkmeans-0.3.8/tglkmeans/src/KMeansCenterMeanPearson.cpp | 2 tglkmeans-0.3.8/tglkmeans/src/TGLkmeans.cpp | 4 tglkmeans-0.3.8/tglkmeans/tests/testthat/test-clustering.R | 4 tglkmeans-0.3.8/tglkmeans/vignettes/usage.Rmd | 105 - 18 files changed, 1345 insertions(+), 339 deletions(-)
Title: 'WebGL'-Based 3D Plotting using the 'three.js' Library
Description: Provides R and 'JavaScript' functions to allow 'WebGL'-based 3D plotting
using the 'three.js' 'JavaScript' library. Interactivity through roll-over
highlighting and toggle buttons is also supported.
Author: Sam Wilks
Maintainer: Sam Wilks <sw463@cam.ac.uk>
Diff between r3js versions 0.0.1 dated 2022-06-14 and 0.0.2 dated 2023-03-21
DESCRIPTION | 10 - MD5 | 28 +-- NEWS.md | 4 R/3JSlines.R | 1 R/3JSmethods.R | 4 R/3JSsetup.R | 2 R/3JSutils.R | 19 ++ R/r3js.R | 2 README.md | 9 build/vignette.rds |binary inst/doc/getting-started.html | 249 +++++++++++++++------------ inst/doc/plot-from-scratch.html | 237 +++++++++++++++---------- inst/doc/using-groupings.html | 237 +++++++++++++++---------- inst/htmlwidgets/lib/functions/load.js | 24 ++ inst/htmlwidgets/lib/functions/navigation.js | 29 ++- 15 files changed, 524 insertions(+), 331 deletions(-)
Title: Quality Control and Analysis of Massachusetts Water Quality Data
Description: Methods for quality control and exploratory analysis of surface
water quality data collected in Massachusetts, USA. Functions are developed
to facilitate data formatting for the Water Quality Exchange Network
<https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting
of data quality objectives to state agencies. Quality control methods are
from Massachusetts Department of Environmental Protection (2020)
<https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.
Author: Marcus Beck [aut, cre] ,
Jill Carr [aut],
Ben Wetherill [aut] ,
Pam DiBona [aut]
Maintainer: Marcus Beck <mbeck@tbep.org>
Diff between MassWateR versions 2.0.1 dated 2023-02-06 and 2.0.2 dated 2023-03-21
DESCRIPTION | 12 ++-- MD5 | 37 +++++++----- NAMESPACE | 1 NEWS.md | 8 ++ R/anlzMWRmap.R | 8 +- R/utilMWRhttpgrace.R |only README.md | 1 man/checkMWRacc.Rd | 86 +++++++++++++++--------------- man/checkMWRfrecom.Rd | 92 ++++++++++++++++---------------- man/checkMWRsites.Rd | 80 ++++++++++++++-------------- man/qcMWRacc.Rd | 14 ---- man/readMWRacc.Rd | 60 ++++++++++----------- man/readMWRfrecom.Rd | 62 ++++++++++----------- man/readMWRsites.Rd | 56 +++++++++---------- man/utilMWRconfint.Rd | 94 ++++++++++++++++----------------- man/utilMWRfiltersurface.Rd | 60 ++++++++++----------- man/utilMWRhttpgrace.Rd |only man/utilMWRoutlier.Rd | 52 +++++++++--------- tests/testthat.R | 8 +- tests/testthat/test-anlzMWRmap.R | 5 + tests/testthat/test-utilMWRhttpgrace.R |only 21 files changed, 370 insertions(+), 366 deletions(-)
Title: Run Quality Checks on Data Prior to Submission to ICES
Description: Run quality checks on data sets using the same checks that are conducted
on the ICES Data Submission Utility (DATSU) <https://datsu.ices.dk/web/index.aspx>.
Author: Colin Millar [aut, cre]
Maintainer: Colin Millar <colin.millar@ices.dk>
Diff between icesDatsuQC versions 1.0.0 dated 2022-02-18 and 1.0.1 dated 2023-03-21
icesDatsuQC-1.0.0/icesDatsuQC/README.md |only icesDatsuQC-1.0.1/icesDatsuQC/DESCRIPTION | 8 +-- icesDatsuQC-1.0.1/icesDatsuQC/MD5 | 12 ++-- icesDatsuQC-1.0.1/icesDatsuQC/NAMESPACE | 14 ++--- icesDatsuQC-1.0.1/icesDatsuQC/NEWS.md | 4 + icesDatsuQC-1.0.1/icesDatsuQC/R/runQcChecks.R | 2 icesDatsuQC-1.0.1/icesDatsuQC/inst |only icesDatsuQC-1.0.1/icesDatsuQC/man/runQCChecks.Rd | 56 +++++++++++------------ 8 files changed, 50 insertions(+), 46 deletions(-)
Title: Download and Visualize Essential Climate Change Data
Description: Provides easy access to essential climate change datasets to non-climate experts. Users can download the latest raw data from authoritative sources and view it via pre-defined 'ggplot2' charts. Datasets include atmospheric CO2, methane, emissions, instrumental and proxy temperature records, sea levels, Arctic/Antarctic sea-ice, Hurricanes, and Paleoclimate data. Sources include: NOAA Mauna Loa Laboratory <https://gml.noaa.gov/ccgg/trends/data.html>, Global Carbon Project <https://www.globalcarbonproject.org/carbonbudget/>, NASA GISTEMP <https://data.giss.nasa.gov/gistemp/>, National Snow and Sea Ice Data Center <https://nsidc.org/home>, CSIRO <https://research.csiro.au/slrwavescoast/sea-level/measurements-and-data/sea-level-data/>, NOAA Laboratory for Satellite Altimetry <https://www.star.nesdis.noaa.gov/socd/lsa/SeaLevelRise/> and HURDAT Atlantic Hurricane Database <https://www.aoml.noaa.gov/hrd/hurdat/Data_Storm.html>, Vostok Paleo carbon dio [...truncated...]
Author: Hernando Cortina [aut, cre]
Maintainer: Hernando Cortina <hch@alum.mit.edu>
Diff between hockeystick versions 0.7.1 dated 2023-02-10 and 0.7.2 dated 2023-03-21
DESCRIPTION | 6 +- LICENSE | 4 - MD5 | 68 ++++++++++++------------- NEWS.md | 4 + R/2kyears_temp.R | 7 +- R/carbon.R | 6 +- R/emissions.R | 8 +- R/extra_viz.R | 34 ++++++------ R/hurricanes.R | 11 ++-- R/icecurves.R | 4 - R/instrumental_temp.R | 6 +- R/methane.R | 8 +- R/paleo.R | 6 +- R/seaice.R | 4 - R/sealevel.R | 6 +- README.md | 1 man/figures/README-carbon-1.png |binary man/figures/README-grid-1.png |binary man/figures/README-icecurves-1.png |binary man/figures/README-methane-1.png |binary man/figures/README-stripes-1.png |binary man/figures/README-stripes2-1.png |binary man/figures/README-temp-1.png |binary man/plot_carbon.Rd | 86 +++++++++++++++---------------- man/plot_emissions.Rd | 2 man/plot_emissions_with_land.Rd | 2 man/plot_hurricane_nrg.Rd | 86 +++++++++++++++---------------- man/plot_hurricanes.Rd | 82 +++++++++++++++--------------- man/plot_icecurves.Rd | 88 ++++++++++++++++---------------- man/plot_methane.Rd | 2 man/plot_paleo.Rd | 90 ++++++++++++++++----------------- man/plot_seaice.Rd | 86 +++++++++++++++---------------- man/plot_sealevel.Rd | 82 +++++++++++++++--------------- man/plot_temp.Rd | 82 +++++++++++++++--------------- man/plot_temp2k.Rd | 100 ++++++++++++++++++------------------- 35 files changed, 490 insertions(+), 481 deletions(-)
Title: Pedigree Inference from SNPs
Description: Multi-generational pedigree inference from incomplete data on
hundreds of SNPs, including parentage assignment and sibship clustering.
See Huisman (2017) (<DOI:10.1111/1755-0998.12665>) for more information.
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman@gmail.com>
Diff between sequoia versions 2.4.1 dated 2023-01-08 and 2.5.3 dated 2023-03-21
sequoia-2.4.1/sequoia/R/Report.R |only sequoia-2.4.1/sequoia/data/FieldMums_griffin.txt.gz |only sequoia-2.4.1/sequoia/data/LH_HSg5.txt.gz |only sequoia-2.4.1/sequoia/data/LH_griffin.txt.gz |only sequoia-2.4.1/sequoia/data/Ped_HSg5.txt.gz |only sequoia-2.4.1/sequoia/data/Ped_griffin.txt.gz |only sequoia-2.4.1/sequoia/inst/rmd |only sequoia-2.4.1/sequoia/man/sequoia_report.Rd |only sequoia-2.5.3/sequoia/DESCRIPTION | 8 sequoia-2.5.3/sequoia/MD5 | 97 sequoia-2.5.3/sequoia/NAMESPACE | 3 sequoia-2.5.3/sequoia/NEWS.md | 32 sequoia-2.5.3/sequoia/R/CalcBYprobs.R | 27 sequoia-2.5.3/sequoia/R/CalcOHLLR.R | 13 sequoia-2.5.3/sequoia/R/CalcPairLL.R | 8 sequoia-2.5.3/sequoia/R/CheckGeno.R | 96 sequoia-2.5.3/sequoia/R/CheckLifeHist.R | 161 - sequoia-2.5.3/sequoia/R/ConfProb.R | 25 sequoia-2.5.3/sequoia/R/CountGenerations.R | 3 sequoia-2.5.3/sequoia/R/FindFamilies.R | 168 + sequoia-2.5.3/sequoia/R/GenoConvert.R | 9 sequoia-2.5.3/sequoia/R/GetMaybeRel.R | 3 sequoia-2.5.3/sequoia/R/MkAgePrior.R | 79 sequoia-2.5.3/sequoia/R/SNPstats.R | 34 sequoia-2.5.3/sequoia/R/Sequoia_F90wrappers.R | 1 sequoia-2.5.3/sequoia/R/Sequoia_Main.R | 81 sequoia-2.5.3/sequoia/R/WriteToFiles.R | 30 sequoia-2.5.3/sequoia/R/getRelM.R | 4 sequoia-2.5.3/sequoia/data/FieldMums_griffin.txt |only sequoia-2.5.3/sequoia/data/LH_HSg5.txt |only sequoia-2.5.3/sequoia/data/LH_griffin.txt |only sequoia-2.5.3/sequoia/data/Ped_HSg5.txt |only sequoia-2.5.3/sequoia/data/Ped_griffin.txt |only sequoia-2.5.3/sequoia/inst/doc/quick_start_example1.html | 17 sequoia-2.5.3/sequoia/inst/doc/vignette-age.R | 9 sequoia-2.5.3/sequoia/inst/doc/vignette-age.Rmd | 29 sequoia-2.5.3/sequoia/inst/doc/vignette-age.pdf |binary sequoia-2.5.3/sequoia/inst/doc/vignette-main.Rmd | 21 sequoia-2.5.3/sequoia/inst/doc/vignette-main.pdf |binary sequoia-2.5.3/sequoia/man/CalcBYprobs.Rd | 30 sequoia-2.5.3/sequoia/man/CalcOHLLR.Rd | 25 sequoia-2.5.3/sequoia/man/CalcPairLL.Rd | 23 sequoia-2.5.3/sequoia/man/CheckGeno.Rd | 10 sequoia-2.5.3/sequoia/man/CheckLH.Rd | 2 sequoia-2.5.3/sequoia/man/EstConf.Rd | 18 sequoia-2.5.3/sequoia/man/FindFamilies.Rd | 38 sequoia-2.5.3/sequoia/man/GetAncestors.Rd |only sequoia-2.5.3/sequoia/man/GetDescendants.Rd |only sequoia-2.5.3/sequoia/man/GetMaybeRel.Rd | 20 sequoia-2.5.3/sequoia/man/MakeAgePrior.Rd | 20 sequoia-2.5.3/sequoia/man/getGenerations.Rd | 5 sequoia-2.5.3/sequoia/man/sequoia.Rd | 74 sequoia-2.5.3/sequoia/src/Sequoia.f90 | 1785 ++++++++------- sequoia-2.5.3/sequoia/src/init.c | 36 sequoia-2.5.3/sequoia/vignettes/vignette-age.Rmd | 29 sequoia-2.5.3/sequoia/vignettes/vignette-main.Rmd | 21 sequoia-2.5.3/sequoia/vignettes/vignette-main.html | 59 57 files changed, 1886 insertions(+), 1267 deletions(-)
Title: 'Rcpp' Bindings for the 'Corpus Workbench' ('CWB')
Description: 'Rcpp' Bindings for the C code of the 'Corpus Workbench' ('CWB'), an indexing and query
engine to efficiently analyze large corpora (<https://cwb.sourceforge.io>). 'RcppCWB' is licensed
under the GNU GPL-3, in line with the GPL-3 license of the 'CWB' (<https://www.r-project.org/Licenses/GPL-3>).
The 'CWB' relies on 'pcre2' (BSD license, see <http://www.pcre.org/licence.txt>)
and 'GLib' (LGPL license, see <https://www.gnu.org/licenses/lgpl-3.0.en.html>).
See the file LICENSE.note for further information. The package includes modified code of the
'rcqp' package (GPL-2, see <https://cran.r-project.org/package=rcqp>). The original work of the authors
of the 'rcqp' package is acknowledged with great respect, and they are listed as authors of this
package. To achieve cross-platform portability (including Windows), using 'Rcpp' for wrapper code
is the approach used by 'RcppCWB'.
Author: Andreas Blaette [aut, cre],
Bernard Desgraupes [aut],
Sylvain Loiseau [aut],
Oliver Christ [ctb],
Bruno Maximilian Schulze [ctb],
Stephanie Evert [ctb],
Arne Fitschen [ctb],
Jeroen Ooms [ctb],
Marius Bertram [ctb],
Tomas Kalibera [ctb]
Maintainer: Andreas Blaette <andreas.blaette@uni-due.de>
Diff between RcppCWB versions 0.5.5 dated 2023-01-25 and 0.6.0 dated 2023-03-21
DESCRIPTION | 21 - MD5 | 61 ++-- NEWS.md | 13 + R/RcppExports.R | 174 +++++++++---- R/cl.R | 171 +++---------- R/cwb.R | 15 - README.md | 14 - build |only cleanup | 32 ++ configure | 72 +---- inst/cpp |only inst/doc |only inst/include/RcppCWB_RcppExports.h | 308 ++++++++++++------------ man/cl_functions.Rd |only man/cl_rework.Rd | 65 +++-- man/cwb_utils.Rd | 8 man/p_attr_default.Rd | 2 src/Makevars.ucrt | 4 src/Makevars.win | 4 src/RcppExports.cpp | 382 +++++++++++++++--------------- src/addons.cpp | 6 src/cl.cpp | 176 +++++++++---- src/cqp.cpp | 9 src/cwb/cl/globals.c | 2 src/cwb/cl/regopt.c | 444 +++++++---------------------------- src/cwb/config.mk | 2 src/cwb/definitions.mk | 28 +- src/utils.cpp | 8 tests/testthat/test_attribute_size.R | 7 tests/testthat/test_cpos2id.R | 2 tests/testthat/test_cpos2str.R | 2 tests/testthat/test_lexicon_size.R | 2 vignettes |only 33 files changed, 964 insertions(+), 1070 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient Projection Algorithms for Factor Rotation.
For details see ?GPArotation. When using this package, please cite:
Bernaards and Jennrich (2005) <doi:10.1177/0013164404272507>.
"Gradient Projection Algorithms and Software
for Arbitrary Rotation Criteria in Factor Analysis".
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2022.10-2 dated 2022-10-22 and 2023.3-1 dated 2023-03-21
GPArotation-2022.10-2/GPArotation/LICENSE |only GPArotation-2022.10-2/GPArotation/R/GPArotation.R |only GPArotation-2022.10-2/GPArotation/inst/doc/Guide.R |only GPArotation-2022.10-2/GPArotation/inst/doc/Guide.Stex |only GPArotation-2022.10-2/GPArotation/inst/doc/Guide.pdf |only GPArotation-2022.10-2/GPArotation/man/00.GPArotation.Intro.Rd |only GPArotation-2022.10-2/GPArotation/man/GPArotation-package.Rd |only GPArotation-2022.10-2/GPArotation/vignettes/Guide.Stex |only GPArotation-2023.3-1/GPArotation/DESCRIPTION | 26 GPArotation-2023.3-1/GPArotation/MD5 | 50 - GPArotation-2023.3-1/GPArotation/NAMESPACE | 6 GPArotation-2023.3-1/GPArotation/NEWS | 12 GPArotation-2023.3-1/GPArotation/R/GPF.R |only GPArotation-2023.3-1/GPArotation/R/GPFRS.R |only GPArotation-2023.3-1/GPArotation/R/NormalizingWeight.R |only GPArotation-2023.3-1/GPArotation/R/RandomStart.R |only GPArotation-2023.3-1/GPArotation/R/printsummary.R |only GPArotation-2023.3-1/GPArotation/R/rotations.R |only GPArotation-2023.3-1/GPArotation/build/vignette.rds |binary GPArotation-2023.3-1/GPArotation/inst/CITATION | 29 GPArotation-2023.3-1/GPArotation/inst/doc/GPAguide.R |only GPArotation-2023.3-1/GPArotation/inst/doc/GPAguide.Stex |only GPArotation-2023.3-1/GPArotation/inst/doc/GPAguide.pdf |only GPArotation-2023.3-1/GPArotation/inst/doc/GPArotateDF.R |only GPArotation-2023.3-1/GPArotation/inst/doc/GPArotateDF.Stex |only GPArotation-2023.3-1/GPArotation/inst/doc/GPArotateDF.pdf |only GPArotation-2023.3-1/GPArotation/man/00.GPArotation.Rd |only GPArotation-2023.3-1/GPArotation/man/GPA.Rd | 200 ++++-- GPArotation-2023.3-1/GPArotation/man/NormalizingWeight.Rd | 4 GPArotation-2023.3-1/GPArotation/man/Random.Start.Rd | 44 - GPArotation-2023.3-1/GPArotation/man/print.GPArotation.Rd | 29 GPArotation-2023.3-1/GPArotation/man/rotations.Rd | 301 +++++----- GPArotation-2023.3-1/GPArotation/man/vgQ.Rd |only GPArotation-2023.3-1/GPArotation/tests/Jennrich2002.R | 2 GPArotation-2023.3-1/GPArotation/tests/print-GPArotation.R |only GPArotation-2023.3-1/GPArotation/tests/rotations.R | 142 ++++ GPArotation-2023.3-1/GPArotation/tests/varimaxVarimax.R |only GPArotation-2023.3-1/GPArotation/vignettes/GPAguide.Stex |only GPArotation-2023.3-1/GPArotation/vignettes/GPArotateDF.Stex |only 39 files changed, 560 insertions(+), 285 deletions(-)
Title: Double Generalized Linear Models Extending Poisson Regression
Description: Model estimation, dispersion testing and diagnosis of hyper-Poisson
Saez-Castillo, A.J. and Conde-Sanchez, A. (2013)
<doi:10.1016/j.csda.2012.12.009> and Conway-Maxwell-Poisson Huang, A. (2017)
regression models.
Author: Antonio Jose Saez-Castillo [aut],
Antonio Conde-Sanchez [aut],
Francisco Martinez [aut, cre]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between DGLMExtPois versions 0.2.1 dated 2022-09-19 and 0.2.2 dated 2023-03-21
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- NEWS.md | 16 ++++++++++------ inst |only 4 files changed, 17 insertions(+), 12 deletions(-)
Title: Downloading Time Series from ALFRED Database for Various
Vintages
Description: Provides direct access to the ALFRED (<https://alfred.stlouisfed.org>) and FRED (<https://fred.stlouisfed.org>) databases.
Its functions return tidy data frames for different releases of the specified time series.
Note that this product uses the FRED© API but is not endorsed or certified by the Federal Reserve Bank of St. Louis.
Author: Onno Kleen [aut, cre]
Maintainer: Onno Kleen <r@onnokleen.de>
Diff between alfred versions 0.2.0 dated 2021-07-26 and 0.2.1 dated 2023-03-21
DESCRIPTION | 12 ++++----- MD5 | 12 ++++----- NAMESPACE | 3 +- NEWS.md | 60 +++++++++++++++++++++++++++++++++++------------ R/get_alfred_series.R | 9 +++---- man/get_alfred_series.Rd | 2 - man/get_fred_series.Rd | 2 - 7 files changed, 66 insertions(+), 34 deletions(-)
Title: Weighted Mixed-Effects Models Using Multilevel Pseudo Maximum
Likelihood Estimation
Description: Run mixed-effects models that include weights at every level. The WeMix package fits a weighted mixed model, also known as a multilevel, mixed, or hierarchical linear model (HLM). The weights could be inverse selection probabilities, such as those developed for an education survey where schools are sampled probabilistically, and then students inside of those schools are sampled probabilistically. Although mixed-effects models are already available in R, WeMix is unique in implementing methods for mixed models using weights at multiple levels. Both linear and logit models are supported. Models may have up to three levels. Random effects are estimated using the PIRLS algorithm from 'lme4pureR' (Walker and Bates (2013) <https://github.com/lme4/lme4pureR>).
Author: Emmanuel Sikali [pdr],
Paul Bailey [aut, cre],
Blue Webb [aut],
Claire Kelley [aut],
Trang Nguyen [aut],
Huade Huo [aut],
Steve Walker [cph] ,
Doug Bates [cph] ,
Eric Buehler [ctb],
Christian Kjeldsen [ctb]
Maintainer: Paul Bailey <pbailey@air.org>
Diff between WeMix versions 3.3.0 dated 2022-12-21 and 4.0.0 dated 2023-03-21
WeMix-3.3.0/WeMix/vignettes/glm.pdf |only WeMix-4.0.0/WeMix/DESCRIPTION | 24 WeMix-4.0.0/WeMix/MD5 | 21 WeMix-4.0.0/WeMix/NAMESPACE | 6 WeMix-4.0.0/WeMix/R/adaptiveQuad.R | 1349 ++++------ WeMix-4.0.0/WeMix/R/drv.R | 46 WeMix-4.0.0/WeMix/R/helpers.R | 28 WeMix-4.0.0/WeMix/inst/NEWS.Rd | 12 WeMix-4.0.0/WeMix/inst/doc/Introduction_to_Mixed_Effects_Models_With_WeMix.pdf |binary WeMix-4.0.0/WeMix/inst/doc/Weighted_Linear_Mixed_Effects_Models.pdf |binary WeMix-4.0.0/WeMix/man/mix.Rd | 13 WeMix-4.0.0/WeMix/tests/testthat/test-1-main.R | 403 ++ 12 files changed, 1112 insertions(+), 790 deletions(-)
Title: Transparent Assessment Framework for Reproducible Research
Description: Functions to organize data, methods, and results used in scientific
analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R,
report.R) that are run sequentially. Each script starts by reading files from
a previous step and ends with writing out files for the next step. Convenience
functions are provided to version control the required data and software, run
analyses, clean residues from previous runs, manage files, manipulate tables,
and produce figures. With a focus on stability and reproducible analyses, TAF
is designed to have no package dependencies. TAF forms a base layer for the
'icesTAF' package and other scientific applications.
Author: Arni Magnusson [aut, cre],
Colin Millar [aut],
Alexandros Kokkalis [ctb],
Iago Mosqueira [ctb],
Ibrahim Umar [ctb],
Hjalte Parner [ctb]
Maintainer: Arni Magnusson <thisisarni@gmail.com>
Diff between TAF versions 4.1.0 dated 2023-01-23 and 4.2.0 dated 2023-03-21
DESCRIPTION | 25 ++++--- MD5 | 132 ++++++++++++++++++++-------------------- NAMESPACE | 6 + NEWS.md | 30 +++++++++ R/TAF-package.R | 20 +++++- R/boot.dir.R |only R/boot.exists.R |only R/clean.R | 45 +++++-------- R/clean.boot.R |only R/clean.data.R | 12 +-- R/clean.library.R | 8 +- R/clean.software.R | 5 - R/convert.spaces.R | 2 R/detach.packages.R | 2 R/download.github.R | 4 - R/draft.data.R | 31 +++++---- R/draft.software.R | 16 ++-- R/ds.package.R | 6 + R/is.r.package.R | 4 - R/make.all.R | 9 +- R/make.taf.R | 5 + R/model.dir.R |only R/model.script.R |only R/process.bibfile.R | 8 +- R/process.entry.R | 14 ++-- R/read.bib.R | 23 ++++-- R/source.all.R | 7 +- R/source.dir.R | 2 R/taf.boot.R | 69 ++++++++++---------- R/taf.boot.path.R | 19 +++-- R/taf.data.path.R | 9 +- R/taf.install.R | 16 ++-- R/taf.libPaths.R | 32 +++++---- R/taf.library.R | 21 +++--- R/taf.session.R | 19 +++-- R/taf.skeleton.R | 19 +++-- R/taf.sources.R | 2 R/taf.unzip.R | 2 build/partial.rdb |binary data/catage.long.rda |binary data/catage.taf.rda |binary data/catage.xtab.rda |binary data/summary.taf.rda |binary data/taf.colors.rda |binary man/TAF-internal.Rd | 22 +++++- man/TAF-package.Rd | 20 +++++- man/clean.Rd | 33 ++++------ man/clean.boot.Rd |only man/clean.data.Rd | 12 +-- man/clean.library.Rd | 8 +- man/clean.software.Rd | 5 - man/convert.spaces.Rd | 2 man/detach.packages.Rd | 2 man/draft.data.Rd | 21 +++--- man/draft.software.Rd | 5 - man/is.r.package.Rd | 4 - man/make.all.Rd | 7 +- man/read.bib.Rd | 15 +++- man/source.all.Rd | 5 + man/source.dir.Rd | 2 man/taf.boot.Rd | 33 +++++----- man/taf.boot.path.Rd | 13 ++- man/taf.data.path.Rd | 9 +- man/taf.install.Rd | 10 +-- man/taf.libPaths.Rd | 15 ++-- man/taf.library.Rd | 2 man/taf.session.Rd | 7 +- man/taf.skeleton.Rd | 6 + man/taf.unzip.Rd | 2 tests/Examples/TAF-Ex.Rout.save | 60 ++++++++++++------ 70 files changed, 552 insertions(+), 392 deletions(-)
Title: Missing Outcome Data in Health Economic Evaluation
Description: Contains a suite of functions for health economic evaluations with missing outcome data.
The package can fit different types of statistical models under a fully Bayesian approach using the software 'JAGS' (which should be installed locally and which is loaded in 'missingHE' via the 'R' package 'R2jags').
Three classes of models can be fitted under a variety of missing data assumptions: selection models, pattern mixture models and hurdle models.
In addition to model fitting, 'missingHE' provides a set of specialised functions to assess model convergence and fit, and to summarise the statistical and economic results using different types of measures and graphs.
The methods implemented are described in Mason (2018) <doi:10.1002/hec.3793>, Molenberghs (2000) <doi:10.1007/978-1-4419-0300-6_18> and Gabrio (2019) <doi:10.1002/sim.8045>.
Author: Andrea Gabrio [aut, cre]
Maintainer: Andrea Gabrio <a.gabrio@maastrichtuniversity.nl>
Diff between missingHE versions 1.4.1 dated 2020-06-25 and 1.5.0 dated 2023-03-21
missingHE-1.4.1/missingHE/R/data.R |only missingHE-1.5.0/missingHE/DESCRIPTION | 14 missingHE-1.5.0/missingHE/MD5 | 93 - missingHE-1.5.0/missingHE/NAMESPACE | 4 missingHE-1.5.0/missingHE/R/coef.missingHE.R | 712 +++++++++- missingHE-1.5.0/missingHE/R/data_read_selection_long.R |only missingHE-1.5.0/missingHE/R/diagnostic.R | 319 ++++ missingHE-1.5.0/missingHE/R/hurdle.R | 12 missingHE-1.5.0/missingHE/R/menss-data.R |only missingHE-1.5.0/missingHE/R/pattern.R | 8 missingHE-1.5.0/missingHE/R/pbs-data.R |only missingHE-1.5.0/missingHE/R/pic.R | 155 +- missingHE-1.5.0/missingHE/R/plot.missingHE.R | 512 ++++++- missingHE-1.5.0/missingHE/R/ppc.R | 693 +++++++++ missingHE-1.5.0/missingHE/R/print.missingHE.R | 25 missingHE-1.5.0/missingHE/R/prior_selection_long.R |only missingHE-1.5.0/missingHE/R/run_selection_long.R |only missingHE-1.5.0/missingHE/R/selection.R | 10 missingHE-1.5.0/missingHE/R/selection_long.R |only missingHE-1.5.0/missingHE/R/summary.missingHE.R | 43 missingHE-1.5.0/missingHE/R/write_hurdle.R | 8 missingHE-1.5.0/missingHE/R/write_pattern.R | 8 missingHE-1.5.0/missingHE/R/write_selection.R | 8 missingHE-1.5.0/missingHE/R/write_selection_long.R |only missingHE-1.5.0/missingHE/README.md | 4 missingHE-1.5.0/missingHE/build/vignette.rds |binary missingHE-1.5.0/missingHE/data/PBS.RData |only missingHE-1.5.0/missingHE/inst/doc/Fitting_MNAR_models_in_missingHE.Rmd | 2 missingHE-1.5.0/missingHE/inst/doc/Fitting_MNAR_models_in_missingHE.html | 290 +++- missingHE-1.5.0/missingHE/inst/doc/Introduction_to_missingHE.Rmd | 4 missingHE-1.5.0/missingHE/inst/doc/Introduction_to_missingHE.html | 510 ++++++- missingHE-1.5.0/missingHE/inst/doc/Longitudinal_models_in_missingHE.R |only missingHE-1.5.0/missingHE/inst/doc/Longitudinal_models_in_missingHE.Rmd |only missingHE-1.5.0/missingHE/inst/doc/Longitudinal_models_in_missingHE.html |only missingHE-1.5.0/missingHE/inst/doc/Model_customisation_in_missingHE.Rmd | 6 missingHE-1.5.0/missingHE/inst/doc/Model_customisation_in_missingHE.html | 318 +++- missingHE-1.5.0/missingHE/man/MenSS.Rd | 2 missingHE-1.5.0/missingHE/man/PBS.Rd |only missingHE-1.5.0/missingHE/man/coef.missingHE.Rd | 12 missingHE-1.5.0/missingHE/man/data_read_selection_long.Rd |only missingHE-1.5.0/missingHE/man/diagnostic.Rd | 38 missingHE-1.5.0/missingHE/man/hurdle.Rd | 5 missingHE-1.5.0/missingHE/man/pattern.Rd | 1 missingHE-1.5.0/missingHE/man/pic.Rd | 22 missingHE-1.5.0/missingHE/man/plot.missingHE.Rd | 16 missingHE-1.5.0/missingHE/man/ppc.Rd | 22 missingHE-1.5.0/missingHE/man/print.missingHE.Rd | 4 missingHE-1.5.0/missingHE/man/prior_selection_long.Rd |only missingHE-1.5.0/missingHE/man/run_selection_long.Rd |only missingHE-1.5.0/missingHE/man/selection.Rd | 3 missingHE-1.5.0/missingHE/man/selection_long.Rd |only missingHE-1.5.0/missingHE/man/summary.missingHE.Rd | 9 missingHE-1.5.0/missingHE/man/write_selection_long.Rd |only missingHE-1.5.0/missingHE/vignettes/Fitting_MNAR_models_in_missingHE.Rmd | 2 missingHE-1.5.0/missingHE/vignettes/Introduction_to_missingHE.Rmd | 4 missingHE-1.5.0/missingHE/vignettes/Longitudinal_models_in_missingHE.Rmd |only missingHE-1.5.0/missingHE/vignettes/Model_customisation_in_missingHE.Rmd | 6 57 files changed, 3486 insertions(+), 418 deletions(-)
Title: Statistical Methods for Auditing
Description: Provides statistical methods for auditing as implemented in JASP
for Audit (Derks et al., 2021 <doi:10.21105/joss.02733>). First, the package
makes it easy for an auditor to plan a statistical sample, select the sample
from the population, and evaluate the misstatement in the sample compliant
with international auditing standards. Next to classical audit sampling
methodology, the package implements Bayesian equivalents of these methods
whose statistical underpinnings are described in Derks et al. (2021)
<doi:10.1111/ijau.12240>, Derks et al. (2021) <doi:10.31234/osf.io/kzqp5>,
and Derks et al. (2022) <doi:10.31234/osf.io/8nf3e>. Second, the package
provides statistical methods for auditing data, including (Bayesian) tests
of digit distributions and tests for repeated values.
Author: Koen Derks [aut, cre]
Maintainer: Koen Derks <k.derks@nyenrode.nl>
Diff between jfa versions 0.6.4 dated 2022-06-16 and 0.6.5 dated 2023-03-21
jfa-0.6.4/jfa/R/jfa_internal.R |only jfa-0.6.4/jfa/R/jfa_methods.R |only jfa-0.6.4/jfa/inst/doc/v1_sampling_workflow.R |only jfa-0.6.4/jfa/inst/doc/v1_sampling_workflow.Rmd |only jfa-0.6.4/jfa/inst/doc/v1_sampling_workflow.html |only jfa-0.6.4/jfa/inst/doc/v2_bayesian_sampling_workflow.R |only jfa-0.6.4/jfa/inst/doc/v2_bayesian_sampling_workflow.Rmd |only jfa-0.6.4/jfa/inst/doc/v2_bayesian_sampling_workflow.html |only jfa-0.6.4/jfa/inst/doc/v3_prior_distributions.R |only jfa-0.6.4/jfa/inst/doc/v3_prior_distributions.Rmd |only jfa-0.6.4/jfa/inst/doc/v3_prior_distributions.html |only jfa-0.6.4/jfa/inst/doc/v4_selection_methodology.R |only jfa-0.6.4/jfa/inst/doc/v4_selection_methodology.Rmd |only jfa-0.6.4/jfa/inst/doc/v4_selection_methodology.html |only jfa-0.6.4/jfa/inst/doc/v5_estimating_misstatement.R |only jfa-0.6.4/jfa/inst/doc/v5_estimating_misstatement.Rmd |only jfa-0.6.4/jfa/inst/doc/v5_estimating_misstatement.html |only jfa-0.6.4/jfa/inst/doc/v6_testing_misstatement.R |only jfa-0.6.4/jfa/inst/doc/v6_testing_misstatement.Rmd |only jfa-0.6.4/jfa/inst/doc/v6_testing_misstatement.html |only jfa-0.6.4/jfa/inst/doc/v7_bayes_factors_summary_statistics.R |only jfa-0.6.4/jfa/inst/doc/v7_bayes_factors_summary_statistics.Rmd |only jfa-0.6.4/jfa/inst/doc/v7_bayes_factors_summary_statistics.html |only jfa-0.6.4/jfa/inst/rmd/empty.png |only jfa-0.6.4/jfa/inst/rmd/materiality_failed.png |only jfa-0.6.4/jfa/inst/rmd/materiality_failed.svg |only jfa-0.6.4/jfa/inst/rmd/materiality_succeeded.png |only jfa-0.6.4/jfa/inst/rmd/materiality_succeeded.svg |only jfa-0.6.4/jfa/inst/rmd/precision_failed.png |only jfa-0.6.4/jfa/inst/rmd/precision_failed.svg |only jfa-0.6.4/jfa/inst/rmd/precision_succeeded.png |only jfa-0.6.4/jfa/inst/rmd/precision_succeeded.svg |only jfa-0.6.4/jfa/inst/rmd/report.Rmd |only jfa-0.6.4/jfa/tests/testthat/test-consistency-auditPrior.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-evaluation.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-other.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-planning.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-selection.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-statistical-tables.R |only jfa-0.6.4/jfa/tests/testthat/test-consistency-workflow.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-MUS.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-appendix-a.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-appendix-c.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-audit-sampler.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-ezquant.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-samplingbook.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-smash21.R |only jfa-0.6.4/jfa/tests/testthat/test-validation-touwhoogduin.R |only jfa-0.6.4/jfa/vignettes/v1_sampling_workflow.Rmd |only jfa-0.6.4/jfa/vignettes/v2_bayesian_sampling_workflow.Rmd |only jfa-0.6.4/jfa/vignettes/v3_prior_distributions.Rmd |only jfa-0.6.4/jfa/vignettes/v4_selection_methodology.Rmd |only jfa-0.6.4/jfa/vignettes/v5_estimating_misstatement.Rmd |only jfa-0.6.4/jfa/vignettes/v6_testing_misstatement.Rmd |only jfa-0.6.4/jfa/vignettes/v7_bayes_factors_summary_statistics.Rmd |only jfa-0.6.5/jfa/DESCRIPTION | 46 jfa-0.6.5/jfa/MD5 | 209 - 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Title: Easily Create Structured Lists or Data Frames with Input
Validation
Description: Easily define templates for lists and data frames that validate
each element. Specify the expected type (i.e., character, numeric, etc),
expected length, minimum and maximum values, allowable values, and more for
each element in your data. Decide whether violations of these expectations
should throw an error or a warning. This package is useful for validating
data within R processes which pull from dynamic data sources such as
databases and web APIs to provide an extra layer of validation around input
and output data.
Author: Chris Walker [aut, cre, cph]
Maintainer: Chris Walker <walkerjameschris@gmail.com>
Diff between dataclass versions 0.1.8 dated 2023-03-15 and 0.2.1 dated 2023-03-21
DESCRIPTION | 20 + MD5 | 22 + NAMESPACE | 1 R/dataclass.R | 201 ++++++++++------- R/validator.R | 588 +++++++++++++++++++++++++++++++++++++++++++------- README.md | 72 ------ man/any_obj.Rd | 102 ++------ man/atm_vec.Rd |only man/chr_vec.Rd |only man/data_validator.Rd | 45 ++- man/dataclass.Rd | 30 +- man/df_like.Rd |only man/dte_vec.Rd |only man/lgl_vec.Rd |only man/num_vec.Rd |only 15 files changed, 754 insertions(+), 327 deletions(-)
Title: Data from Access to Information Law
Description: Downloads the public data available from the Brazilian Access to Information Law and and performs a search on information requests and appeals made since 2015.
Author: Igor Laltuf [aut, cre]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>
Diff between dail versions 1.5 dated 2023-01-23 and 1.5.2 dated 2023-03-21
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/appeals.R | 2 +- R/requests.R | 2 +- README.md | 2 -- inst/CITATION | 7 ++----- tests/testthat/test-appeals.R | 9 ++------- tests/testthat/test-requests.R | 7 ++----- 8 files changed, 18 insertions(+), 31 deletions(-)
Title: Tools for Estimating and Predicting the Cosinor Model
Description: A set of simple functions that transforms longitudinal
data to estimate the cosinor linear model as described in Tong (1976).
Methods are given to summarize the mean, amplitude and acrophase, to
predict the mean annual outcome value, and to test the coefficients.
Author: Michael Sachs <sachsmc@gmail.com>
Maintainer: Michael Sachs <sachsmc@gmail.com>
Diff between cosinor versions 1.2.2 dated 2022-05-24 and 1.2.3 dated 2023-03-21
cosinor-1.2.2/cosinor/man/ggplot.cosinor.lm.Rd |only cosinor-1.2.3/cosinor/DESCRIPTION | 10 cosinor-1.2.3/cosinor/MD5 | 22 cosinor-1.2.3/cosinor/NAMESPACE | 3 cosinor-1.2.3/cosinor/NEWS | 42 - cosinor-1.2.3/cosinor/R/cosinor_analyzer.R | 232 ++++---- cosinor-1.2.3/cosinor/R/plot.cosinor.lm.R | 128 ++-- cosinor-1.2.3/cosinor/build/vignette.rds |binary cosinor-1.2.3/cosinor/inst/doc/Intro.R | 58 +- cosinor-1.2.3/cosinor/inst/doc/Intro.Rmd | 154 ++--- cosinor-1.2.3/cosinor/inst/doc/Intro.html | 673 ++++++++++++++++--------- cosinor-1.2.3/cosinor/man/ggplot_cosinor.lm.Rd |only cosinor-1.2.3/cosinor/vignettes/Intro.Rmd | 154 ++--- 13 files changed, 847 insertions(+), 629 deletions(-)
Title: Access Data from the Brazilian Development Bank (BNDES)
Description: Allows access to data on BNDES disbursements and contracts since 1995. The package makes it easy to import data from the bank into R.<https://www.bndes.gov.br/SiteBNDES/bndes/bndes_en>.
Author: Igor Laltuf [aut, cre]
Maintainer: Igor Laltuf <igorlaltuf@gmail.com>
Diff between bndesr versions 1.0 dated 2023-02-03 and 1.0.1 dated 2023-03-21
DESCRIPTION | 8 +- MD5 | 16 ++--- R/query_bndespar_desimbursements.R | 25 ++++++--- R/query_bndespar_portfolio.R | 32 ++++++----- R/query_contracts.R | 69 +++++++++++++++---------- R/query_desimbursements.R | 25 +++++++-- README.md | 8 +- tests/testthat/test-query_bndespar_portfolio.R | 3 - tests/testthat/test-query_contracts.R | 6 +- 9 files changed, 120 insertions(+), 72 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-02-28 0.1.1
2019-12-13 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-02 1.1.1
Title: An Implementation of Graph Net Architecture Based on 'torch'
Description: Proposes a 'torch' implementation of Graph Net architecture allowing different options for message passing and feature embedding.
Author: Giancarlo Vercellino [aut, cre, cph]
Maintainer: Giancarlo Vercellino <giancarlo.vercellino@gmail.com>
Diff between spinner versions 1.0.0 dated 2023-02-20 and 1.1.0 dated 2023-03-21
spinner-1.0.0/spinner/R/main.R |only spinner-1.1.0/spinner/DESCRIPTION | 8 +- spinner-1.1.0/spinner/MD5 | 16 ++-- spinner-1.1.0/spinner/NAMESPACE | 30 ++++++++- spinner-1.1.0/spinner/NEWS.md | 9 ++ spinner-1.1.0/spinner/R/main1.R |only spinner-1.1.0/spinner/R/main2.R |only spinner-1.1.0/spinner/R/spinner.R | 2 spinner-1.1.0/spinner/man/spinner.Rd | 26 ++++--- spinner-1.1.0/spinner/man/spinner_random_search.Rd |only spinner-1.1.0/spinner/tests/testthat/test.R | 69 +++++++++++++++++++-- 11 files changed, 128 insertions(+), 32 deletions(-)
Title: Running Operations for Vectors
Description: Lightweight library for rolling windows operations. Package enables
full control over the window length, window lag and a time indices. With a runner
one can apply any R function on a rolling windows. The package eases work with
equally and unequally spaced time series.
Author: Dawid Kalędkowski [aut, cre]
Maintainer: Dawid Kalędkowski <dawid.kaledkowski@gmail.com>
Diff between runner versions 0.4.2 dated 2022-09-17 and 0.4.3 dated 2023-03-21
runner-0.4.2/runner/src/Makevars |only runner-0.4.2/runner/src/Makevars.win |only runner-0.4.3/runner/DESCRIPTION | 8 ++++---- runner-0.4.3/runner/MD5 | 14 ++++++-------- runner-0.4.3/runner/NEWS.md | 4 ++++ runner-0.4.3/runner/R/run.R | 2 +- runner-0.4.3/runner/README.md | 2 -- runner-0.4.3/runner/inst/doc/apply_any_r_function.html | 4 ++-- runner-0.4.3/runner/man/runner.Rd | 2 +- 9 files changed, 18 insertions(+), 18 deletions(-)