Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/colors>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, ctb] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut, cre] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Brenton M. Wiernik [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Matthew Smith [rev] ,
Jakob Bossek [re [...truncated...]
Maintainer: Indrajeet Patil <patilindrajeet.science@gmail.com>
Diff between see versions 0.7.4 dated 2022-11-25 and 0.7.5 dated 2023-03-23
see-0.7.4/see/tests/testthat/helpers.R |only see-0.7.5/see/DESCRIPTION | 21 see-0.7.5/see/MD5 | 247 +++++----- see-0.7.5/see/NAMESPACE | 2 see-0.7.5/see/NEWS.md | 11 see-0.7.5/see/R/coord_radar.R | 22 see-0.7.5/see/R/data_plot.R | 84 +-- see-0.7.5/see/R/geom_binomdensity.R | 11 see-0.7.5/see/R/geom_from_list.R | 39 - see-0.7.5/see/R/global_vars.R |only see-0.7.5/see/R/plot.bayesfactor_parameters.R | 8 see-0.7.5/see/R/plot.binned_residuals.R | 6 see-0.7.5/see/R/plot.check_distribution.R | 86 ++- see-0.7.5/see/R/plot.check_heteroscedasticity.R | 11 see-0.7.5/see/R/plot.check_homogeneity.R | 24 see-0.7.5/see/R/plot.check_model.R | 32 - see-0.7.5/see/R/plot.check_outliers_new.R | 5 see-0.7.5/see/R/plot.check_overdisp.R | 2 see-0.7.5/see/R/plot.compare_parameters.R | 74 +- see-0.7.5/see/R/plot.compare_performance.R | 2 see-0.7.5/see/R/plot.describe_distribution.R | 10 see-0.7.5/see/R/plot.equivalence_test.R | 83 +-- see-0.7.5/see/R/plot.estimate_contrasts.R | 6 see-0.7.5/see/R/plot.estimate_density.R | 10 see-0.7.5/see/R/plot.hdi.R | 13 see-0.7.5/see/R/plot.n_factors.R | 14 see-0.7.5/see/R/plot.p_direction.R | 10 see-0.7.5/see/R/plot.p_function.R | 4 see-0.7.5/see/R/plot.p_significance.R | 21 see-0.7.5/see/R/plot.parameters_brms_meta.R | 18 see-0.7.5/see/R/plot.parameters_model.R | 53 -- see-0.7.5/see/R/plot.parameters_pca.R | 2 see-0.7.5/see/R/plot.parameters_sem.R | 12 see-0.7.5/see/R/plot.parameters_simulate.R | 8 see-0.7.5/see/R/plot.performance_pp_check.R | 29 - see-0.7.5/see/R/plot.performance_roc.R | 4 see-0.7.5/see/R/plot.point_estimates.R | 8 see-0.7.5/see/R/plot.rope.R | 8 see-0.7.5/see/R/plot.si.R | 23 see-0.7.5/see/R/plots.R | 23 see-0.7.5/see/R/scale_color_bluebrown.R | 72 ++ see-0.7.5/see/R/scale_color_colorhex.R | 96 +++ see-0.7.5/see/R/scale_color_flat.R | 96 +++ see-0.7.5/see/R/scale_color_material.R | 95 +++ see-0.7.5/see/R/scale_color_metro.R | 93 +++ see-0.7.5/see/R/scale_color_okabeito.R | 70 ++ see-0.7.5/see/R/scale_color_pizza.R | 78 ++- see-0.7.5/see/R/scale_color_see.R | 27 - see-0.7.5/see/R/scale_color_social.R | 25 - see-0.7.5/see/R/theme_modern.R | 176 +++---- see-0.7.5/see/R/theme_radar.R | 35 - see-0.7.5/see/R/utils.R | 45 + see-0.7.5/see/R/utils_add_prior_layer.R | 12 see-0.7.5/see/inst/WORDLIST |only see-0.7.5/see/man/add_plot_attributes.Rd | 4 see-0.7.5/see/man/bluebrown_colors.Rd | 3 see-0.7.5/see/man/coord_radar.Rd | 22 see-0.7.5/see/man/data_plot.Rd | 68 +- see-0.7.5/see/man/geom_from_list.Rd | 17 see-0.7.5/see/man/okabeito_colors.Rd | 6 see-0.7.5/see/man/palette_bluebrown.Rd | 3 see-0.7.5/see/man/palette_flat.Rd | 3 see-0.7.5/see/man/palette_material.Rd | 3 see-0.7.5/see/man/palette_metro.Rd | 3 see-0.7.5/see/man/palette_okabeito.Rd | 7 see-0.7.5/see/man/palette_see.Rd | 3 see-0.7.5/see/man/palette_social.Rd | 3 see-0.7.5/see/man/plot.see_check_distribution.Rd | 15 see-0.7.5/see/man/plot.see_compare_parameters.Rd | 18 see-0.7.5/see/man/plot.see_estimate_contrasts.Rd | 2 see-0.7.5/see/man/plot.see_estimate_density.Rd | 6 see-0.7.5/see/man/plot.see_hdi.Rd | 4 see-0.7.5/see/man/plot.see_n_factors.Rd | 12 see-0.7.5/see/man/plot.see_p_direction.Rd | 6 see-0.7.5/see/man/plot.see_p_significance.Rd | 6 see-0.7.5/see/man/plot.see_parameters_brms_meta.Rd | 1 see-0.7.5/see/man/plot.see_point_estimate.Rd | 6 see-0.7.5/see/man/plot.see_rope.Rd | 6 see-0.7.5/see/man/plot.see_si.Rd | 6 see-0.7.5/see/man/plots.Rd | 4 see-0.7.5/see/man/print.see_performance_pp_check.Rd | 8 see-0.7.5/see/man/scale_color_bluebrown.Rd | 3 see-0.7.5/see/man/scale_color_flat.Rd | 3 see-0.7.5/see/man/scale_color_material.Rd | 3 see-0.7.5/see/man/scale_color_metro.Rd | 3 see-0.7.5/see/man/scale_color_okabeito.Rd | 37 + see-0.7.5/see/man/scale_color_see.Rd | 3 see-0.7.5/see/man/scale_color_social.Rd | 3 see-0.7.5/see/man/theme_abyss.Rd | 7 see-0.7.5/see/man/theme_blackboard.Rd | 7 see-0.7.5/see/man/theme_lucid.Rd | 7 see-0.7.5/see/man/theme_modern.Rd | 7 see-0.7.5/see/man/theme_radar.Rd | 44 + see-0.7.5/see/tests/testthat.R | 30 - see-0.7.5/see/tests/testthat/helper-models.R |only see-0.7.5/see/tests/testthat/helper.R |only see-0.7.5/see/tests/testthat/test-check_model.R | 109 ++++ see-0.7.5/see/tests/testthat/test-plot.check_distribution.R | 4 see-0.7.5/see/tests/testthat/test-plot.check_heteroscedasticity.R | 1 see-0.7.5/see/tests/testthat/test-plot.check_homogeneity.R | 5 see-0.7.5/see/tests/testthat/test-plot.check_normality.R | 7 see-0.7.5/see/tests/testthat/test-plot.check_outliers.R | 1 see-0.7.5/see/tests/testthat/test-plot.compare_performance.R | 1 see-0.7.5/see/tests/testthat/test-plot.describe_distribution.R | 1 see-0.7.5/see/tests/testthat/test-plot.easycormatrix.R | 8 see-0.7.5/see/tests/testthat/test-plot.equivalence_test.R | 2 see-0.7.5/see/tests/testthat/test-plot.estimate_contrasts.R | 10 see-0.7.5/see/tests/testthat/test-plot.estimate_density.R | 10 see-0.7.5/see/tests/testthat/test-plot.hdi.R | 7 see-0.7.5/see/tests/testthat/test-plot.n_factors.R | 7 see-0.7.5/see/tests/testthat/test-plot.p_direction.R | 7 see-0.7.5/see/tests/testthat/test-plot.p_significance.R | 7 see-0.7.5/see/tests/testthat/test-plot.parameters_model.R | 1 see-0.7.5/see/tests/testthat/test-plot.parameters_pca.R | 1 see-0.7.5/see/tests/testthat/test-plot.parameters_sem.R | 1 see-0.7.5/see/tests/testthat/test-plot.parameters_simulate.R | 1 see-0.7.5/see/tests/testthat/test-plot.performance_pp_check.R | 2 see-0.7.5/see/tests/testthat/test-plot.performance_roc.R | 1 see-0.7.5/see/tests/testthat/test-plot.point_estimates.R | 6 see-0.7.5/see/tests/testthat/test-plot.rope.R | 6 see-0.7.5/see/tests/testthat/test-plot.si.R | 7 see-0.7.5/see/tests/testthat/test-plots.R | 2 see-0.7.5/see/tests/testthat/test-scale_color_colorhex_c.R | 2 see-0.7.5/see/tests/testthat/test-vdiffr_bayestestr_plots.R | 6 see-0.7.5/see/tests/testthat/test-vdiffr_geoms_coords.R | 8 see-0.7.5/see/tests/testthat/test-vdiffr_scale_color.R | 6 see-0.7.5/see/tests/testthat/test-vdiffr_themes.R | 6 127 files changed, 1618 insertions(+), 993 deletions(-)
Title: Interactive Analytic Networks
Description: Create interactive analytic networks. It joins the data analysis power of R to obtain coincidences, co-occurrences and correlations, and the visualization libraries of 'JavaScript' in one package.
Author: Modesto Escobar [cre, aut, cph]
,
David Barrios [aut],
Carlos Prieto [aut] ,
Luis Martinez-Uribe [aut] ,
Pablo Cabrera-Álvarez [aut] ,
Cristina Calvo-Lopez [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 2.0.20 dated 2021-10-28 and 2.0.48 dated 2023-03-23
DESCRIPTION | 26 +- MD5 | 48 +++- NAMESPACE | 24 +- R/caring.R |only R/exports.R | 3 R/gallery.R | 5 R/get_templates.R |only R/multigraph.R |only R/netcoin.R | 479 +++++++++++++++++++++++++++++++++++++++++--- R/pie.R |only build/partial.rdb |binary build/vignette.rds |binary data/ess.RData |binary inst/doc/netCoin.html | 4 man/addDescription.Rd |only man/addImage.Rd |only man/addTutorial.Rd |only man/caring.Rd |only man/caring_create_graphs.Rd |only man/caring_read_file.Rd |only man/cobCoin.Rd |only man/d_netCorr.Rd |only man/gallery.Rd | 19 + man/get_panel_template.Rd |only man/get_template.Rd |only man/logCoin.Rd |only man/multiPages.Rd |only man/multigraphCreate.Rd | 18 + man/netCoin-package.Rd | 2 man/netCoin.Rd | 16 - man/netCorr.Rd | 4 man/pieCoin.Rd |only man/renderLinks.Rd |only man/surCoin.Rd | 2 34 files changed, 564 insertions(+), 86 deletions(-)
Title: Tools for Easier Analysis of Meteorological Fields
Description: Many useful functions and extensions for dealing
with meteorological data in the tidy data framework. Extends 'ggplot2'
for better plotting of scalar and vector fields and provides commonly
used analysis methods in the atmospheric sciences.
Author: Elio Campitelli [cre, aut]
Maintainer: Elio Campitelli <elio.campitelli@cima.fcen.uba.ar>
Diff between metR versions 0.13.0 dated 2022-10-06 and 0.14.0 dated 2023-03-23
DESCRIPTION | 12 MD5 | 188 NEWS.md | 16 R/EOF.R | 5 R/EOF_methods.R | 4 R/FitLm.R | 2 R/FitWave.R | 12 R/MakeBreaks.R | 6 R/MaskLand.R | 38 R/RepeatCircular.R | 2 R/Smooth2D.R | 2 R/geom_contour2.r | 19 R/geom_contour_fill.R | 6 R/geom_contour_tanaka.R | 2 R/geom_relief.R | 6 R/geom_shadow.R | 5 R/geom_streamline.R | 24 R/geom_text_contour.R | 3 R/guide_vector.R | 2 R/helpfunctions.R | 2 R/scale-unbinned.R | 24 R/scale_divergent.R | 2 R/scale_longitude.R | 12 R/scale_vector.R | 2 R/stat_bin_circular.R | 4 R/stat_contour2.r | 4 R/stat_contour_fill.R | 2 R/stat_na.R | 1 R/zzz.R | 2 README.md | 24 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/Visualization-tools.R | 17 inst/doc/Visualization-tools.Rmd | 19 inst/doc/Visualization-tools.html | 161 inst/doc/Working-with-data.R | 4 inst/doc/Working-with-data.Rmd | 6 inst/doc/Working-with-data.html | 129 man/EOF.Rd | 5 man/FitLm.Rd | 2 man/MakeBreaks.Rd | 6 man/MaskLand.Rd | 17 man/Smooth2D.Rd | 2 man/WrapCircular.Rd | 2 man/discretised_scale.Rd | 26 man/figures/field-1.png |binary man/geom_arrow.Rd | 22 man/geom_contour2.Rd | 36 man/geom_contour_fill.Rd | 30 man/geom_contour_tanaka.Rd | 22 man/geom_relief.Rd | 20 man/geom_streamline.Rd | 33 man/geom_text_contour.Rd | 15 man/guide_colourstrip.Rd | 3 man/guide_vector.Rd | 3 man/label_scales.Rd | 1 man/scale_divergent.Rd | 3 man/scale_longitude.Rd | 16 man/scale_mag.Rd | 1 man/stat_na.Rd | 20 man/stat_subset.Rd | 20 man/waves.Rd | 12 tests/testthat/Rplots.pdf |binary tests/testthat/_snaps/vis-arrow/dx-and-dy.svg | 2 tests/testthat/_snaps/vis-arrow/guide-default.svg | 568 +- tests/testthat/_snaps/vis-arrow/guide-max-size-2.svg | 568 +- tests/testthat/_snaps/vis-arrow/guide-mm.svg | 568 +- tests/testthat/_snaps/vis-arrow/guide-name-guide.svg | 2 tests/testthat/_snaps/vis-arrow/mag-and-angle.svg | 2 tests/testthat/_snaps/vis-arrow/vector-arrow-example.svg | 2504 +++++----- tests/testthat/_snaps/vis-arrow/with-scale.svg | 568 +- tests/testthat/_snaps/vis-contour2/aesthetics-in-contour-labels.svg | 112 tests/testthat/_snaps/vis-contour2/contour2-labels.svg | 56 tests/testthat/_snaps/vis-contour2/tanaka.svg | 48 tests/testthat/_snaps/vis-contour_fill/contour-fill-base-stat.svg | 24 tests/testthat/_snaps/vis-contour_fill/contour-fill-base.svg | 24 tests/testthat/_snaps/vis-contour_fill/contour-fill-fill.svg | 24 tests/testthat/_snaps/vis-contour_fill/contour-fill-level-d.svg | 24 tests/testthat/_snaps/vis-contour_fill/contour-fill-level.svg | 48 tests/testthat/_snaps/vis-contour_fill/contour-fill-nofill.svg | 24 tests/testthat/_snaps/vis-contour_fill/contour-fill-nofill2.svg | 24 tests/testthat/_snaps/vis-discretised-scale/discretised-change-limits.svg | 16 tests/testthat/_snaps/vis-discretised-scale/discretised-change-limits2.svg | 16 tests/testthat/_snaps/vis-discretised-scale/discretised-default.svg | 16 tests/testthat/_snaps/vis-discretised-scale/discretised-divergent.svg | 16 tests/testthat/_snaps/vis-discretised-scale/discretised-retrofitted.svg | 16 tests/testthat/_snaps/vis-discretised-scale/user-supplied-breaks.svg | 16 tests/testthat/test-vis-contour2.R | 13 tests/testthat/test-vis-contour_fill.R | 4 tests/testthat/test-vis-discretised-scale.R | 2 tests/testthat/test-vis-text-contour.R | 4 tests/testthat/tests.R | 4 vignettes/Visualization-tools.Rmd | 19 vignettes/Working-with-data.Rmd | 6 95 files changed, 3273 insertions(+), 3155 deletions(-)
Title: Simplified UFA
Description: A simplified version of the 'IDSL.UFA' package to calculate isotopic profiles and adduct formulas from molecular formulas with no dependency on other R packages for online tools and educational mass spectrometry courses. The 'IDSL.SUFA' package also provides an ancillary module to process user-defined adduct formulas.
Author: Sadjad Fakouri-Baygi [aut] ,
Dinesh Barupal [cre, aut]
Maintainer: Dinesh Barupal <dinesh.barupal@mssm.edu>
Diff between IDSL.SUFA versions 1.2 dated 2023-01-06 and 1.3 dated 2023-03-23
DESCRIPTION | 21 ++++++++++----------- LICENSE | 2 +- MD5 | 12 ++++++------ NAMESPACE | 1 - R/isotopic_profile_molecular_formula_feeder.R | 4 ++-- build/partial.rdb |binary inst/CITATION | 24 +++++++++++------------- 7 files changed, 30 insertions(+), 34 deletions(-)
Title: Access Google Sheets using the Sheets API V4
Description: Interact with Google Sheets through the Sheets API v4
<https://developers.google.com/sheets/api>. "API" is an acronym for
"application programming interface"; the Sheets API allows users to
interact with Google Sheets programmatically, instead of via a web
browser. The "v4" refers to the fact that the Sheets API is currently
at version 4. This package can read and write both the metadata and
the cell data in a Sheet.
Author: Jennifer Bryan [cre, aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between googlesheets4 versions 1.0.1 dated 2022-08-13 and 1.1.0 dated 2023-03-23
DESCRIPTION | 29 +++---- LICENSE | 4 - MD5 | 106 +++++++++++++++------------- NAMESPACE | 2 NEWS.md | 14 +++ R/googlesheets4-package.R | 1 R/gs4_auth.R | 110 +++++++++++++++++++----------- R/request_make.R | 4 - R/sheet_add.R | 2 R/sheets_id-class.R | 2 R/sysdata.rda |binary README.md | 90 +++++++++++------------- man/figures/lifecycle-archived.svg | 22 +++++- man/figures/lifecycle-defunct.svg | 22 +++++- man/figures/lifecycle-deprecated.svg | 22 +++++- man/figures/lifecycle-experimental.svg | 22 +++++- man/figures/lifecycle-maturing.svg | 22 +++++- man/figures/lifecycle-questioning.svg | 22 +++++- man/figures/lifecycle-soft-deprecated.svg | 22 +++++- man/figures/lifecycle-stable.svg | 30 +++++++- man/figures/lifecycle-superseded.svg |only man/figures/logo.png |binary man/googlesheets4-package.Rd | 4 - man/gs4_auth.Rd | 11 +-- man/gs4_auth_configure.Rd | 81 ++++++++++------------ man/gs4_browse.Rd | 2 man/gs4_examples.Rd | 2 man/gs4_get.Rd | 2 man/gs4_oauth_app.Rd |only man/range_autofit.Rd | 2 man/range_delete.Rd | 2 man/range_flood.Rd | 2 man/range_read.Rd | 2 man/range_read_cells.Rd | 2 man/range_speedread.Rd | 2 man/range_write.Rd | 2 man/request_make.Rd | 4 - man/sheet_add.Rd | 2 man/sheet_append.Rd | 2 man/sheet_copy.Rd | 2 man/sheet_delete.Rd | 2 man/sheet_properties.Rd | 2 man/sheet_relocate.Rd | 2 man/sheet_rename.Rd | 2 man/sheet_resize.Rd | 2 man/sheet_write.Rd | 2 man/sheets_id.Rd | 6 - tests/testthat/_snaps/gs4_auth.md |only tests/testthat/helper.R | 4 - tests/testthat/test-gs4_auth.R |only tests/testthat/test-gs4_example.R | 2 tests/testthat/test-range_read_cells.R | 4 - tests/testthat/test-sheet_add.R | 10 +- tests/testthat/test-sheet_delete.R | 6 - tests/testthat/test-sheets_id-class.R | 8 +- tests/testthat/test-utils.R | 4 - 56 files changed, 469 insertions(+), 261 deletions(-)
Title: A Distributed Worker Launcher
Description: In computationally demanding analysis projects,
statisticians and data scientists asynchronously
deploy long-running tasks to distributed systems,
ranging from traditional clusters to cloud services
The 'NNG'-powered 'mirai' R package by Gao (2023)
<https://CRAN.R-project.org/package=mirai> is a sleek
and sophisticated scheduler that
efficiently processes these intense workloads.
The 'crew' package extends 'mirai' with a unifying
interface for third-party worker launchers.
Inspiration also comes from packages
'future' by Bengtsson (2021) <doi:10.32614/RJ-2021-048>,
'rrq' by FitzJohn and Ashton (2023) <https://github.com/mrc-ide/rrq>,
'clustermq' by Schubert (2019) <doi:10.1093/bioinformatics/btz284>),
and 'batchtools' by Lang, Bischel, and Surmann (2017)
<doi:10.21105/joss.00135>.
Author: William Michael Landau [aut, cre]
,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between crew versions 0.0.4 dated 2023-03-21 and 0.0.5 dated 2023-03-23
DESCRIPTION | 6 - MD5 | 55 +++++++++------- NEWS.md | 8 ++ R/crew_controller_callr.R | 14 +--- R/crew_eval.R | 2 R/crew_launcher.R | 52 +++++++++++++++ R/crew_launcher_callr.R | 2 R/crew_router.R | 89 ++++++--------------------- build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/plugins.R |only inst/doc/plugins.Rmd |only inst/doc/plugins.html |only man/crew_class_launcher.Rd | 89 +++++++++++++++++++++++++++ man/crew_class_launcher_callr.Rd | 1 man/crew_class_router.Rd | 22 ------ man/crew_controller_callr.Rd | 35 ++++------ man/crew_launcher_callr.Rd | 2 man/crew_router.Rd | 28 +------- tests/launchers |only tests/testthat/test-crew_controller_callr.R | 12 --- tests/testthat/test-crew_controller_group.R | 36 ++-------- tests/testthat/test-crew_launcher.R | 45 +++++++++++++ tests/testthat/test-crew_launcher_callr.R | 20 +----- tests/testthat/test-crew_router.R | 15 +--- tests/throughput/test-persistent-autoscale.R | 41 ++++++++---- tests/throughput/test-persistent-group.R | 2 tests/throughput/test-persistent.R | 2 tests/throughput/test-transient-wait.R | 6 - tests/throughput/test-transient.R | 7 -- vignettes/plugins.Rmd |only 31 files changed, 335 insertions(+), 257 deletions(-)
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing, manipulating and analyzing
transaction data and patterns (frequent itemsets and association rules).
Also provides C implementations of the association mining algorithms Apriori and Eclat.
Hahsler, Gruen and Hornik (2005) <doi:10.18637/jss.v014.i15>.
Author: Michael Hahsler [aut, cre, cph]
,
Christian Buchta [aut, cph],
Bettina Gruen [aut, cph],
Kurt Hornik [aut, cph] ,
Christian Borgelt [ctb, cph],
Ian Johnson [ctb],
Makhlouf Ledmi [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arules versions 1.7-5 dated 2022-10-21 and 1.7-6 dated 2023-03-23
DESCRIPTION | 32 +++--- MD5 | 51 +++++----- NEWS.md | 13 ++ R/fim4r.R | 96 +++++++++++++++----- README.md | 158 ++++++++++++++++----------------- build/partial.rdb |binary build/vignette.rds |binary data/Adult.rda |binary data/AdultUCI.rda |binary data/Epub.rda |binary data/Groceries.rda |binary data/Income.rda |binary data/IncomeESL.rda |binary data/Mushroom.rda |binary data/SunBai.rda |binary inst/CITATION | 8 + inst/doc/arules.pdf |binary man/fim4r.Rd | 45 +++++---- src/rapriori.c | 18 ++- src/reclat.c | 7 + tests/testthat/test-apriori.R | 37 +++---- tests/testthat/test-concise.R | 10 +- tests/testthat/test-confint.R | 8 + tests/testthat/test-fim4r.R |only tests/testthat/test-interestMeasures.R | 2 tests/testthat/test-read_write.R | 6 - tests/testthat/test-sets.R | 2 27 files changed, 291 insertions(+), 202 deletions(-)
Title: Non-Interactive Spatial Tools for Raster Processing and
Visualization
Description: S3 classes and methods for manipulation with georeferenced raster data: reading/writing, processing, multi-panel visualization. SWU.
Author: Nikita Platonov [aut, cre]
Maintainer: Nikita Platonov <platonov@sevin.ru>
Diff between ursa versions 3.9.9 dated 2022-12-17 and 3.9.10 dated 2023-03-23
DESCRIPTION | 6 - MD5 | 76 ++++++------ NAMESPACE | 7 - NEWS.md | 23 ++- R/Ops.focal_extrem.R | 2 R/Ops.focal_mean.R | 4 R/Ops.focal_median.R | 2 R/Ops.focal_special.R | 20 ++- R/Ops.local_group.R | 4 R/Ops.local_stat.R | 2 R/allocate.R | 2 R/classRaster.Extract.R | 24 ++-- R/classRaster.Replace.R | 4 R/classRaster_GroupGeneric.R | 2 R/codec.R | 4 R/colorize.R | 4 R/compose_close.R | 15 +- R/cubehelix.R | 2 R/glance.R | 2 R/regrid.R | 2 R/temporal_interpolate.R | 4 R/temporal_mean.R | 4 R/ursa_000.R | 3 R/xxx.browse.R | 9 + R/xxx.gdalwarp.R | 27 +++- R/xxx.panel_cluster.R | 4 R/xxx.spatialize.R | 25 +++- R/yyy.C.R | 4 R/yyy.connection.R | 13 +- R/yyy.crop.R | 6 - R/yyy.util.R | 24 ++-- R/yyy.xtra.R | 2 R/zzz.R | 1 inst/requisite/coast-l.rds |binary man/glance.Rd | 6 - man/panel_raster.Rd | 2 src/init.c | 256 +++++++++++++++++++++---------------------- src/ursa.c | 73 +++++++----- src/ursa.h | 130 ++++++++++----------- 39 files changed, 442 insertions(+), 358 deletions(-)
Title: Tools for Data Splitting
Description: Fast, lightweight toolkit for data splitting. Data sets can
be partitioned into disjoint groups (e.g. into training, validation,
and test) or into (repeated) k-folds for subsequent cross-validation.
Besides basic splits, the package supports stratified, grouped as well
as blocked splitting. Furthermore, cross-validation folds for time
series data can be created. See e.g. Hastie et al. (2001)
<doi:10.1007/978-0-387-84858-7> for the basic background on data
partitioning and cross-validation.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between splitTools versions 0.3.2 dated 2022-01-28 and 0.3.3 dated 2023-03-23
DESCRIPTION | 21 - MD5 | 31 +- NAMESPACE | 17 - NEWS.md | 10 R/multi_strata.R |only R/partition.R | 1 README.md | 35 +- build/vignette.rds |binary inst/doc/splitTools.R | 11 inst/doc/splitTools.Rmd | 32 ++ inst/doc/splitTools.html | 475 ++++++++++++++++++++++++++++++------- man/create_folds.Rd | 106 ++++---- man/create_timefolds.Rd | 64 ++-- man/multi_strata.Rd |only man/partition.Rd | 108 ++++---- tests/testthat/test-multi_strata.R |only tests/testthat/test-partition.R | 4 vignettes/splitTools.Rmd | 32 ++ 18 files changed, 660 insertions(+), 287 deletions(-)
Title: Applied Statistics for Economics and Management with R
Description: Datasets and functions for the book "Statistiques pour l’économie et la gestion", "Théorie et applications en entreprise", F. Bertrand, Ch. Derquenne, G. Dufrénot, F. Jawadi and M. Maumy, C. Borsenberger editor, (2021, ISBN:9782807319448, De Boeck Supérieur, Louvain-la-Neuve).
The first chapter of the book is dedicated to an introduction to statistics and their world.
The second chapter deals with univariate exploratory statistics and graphics.
The third chapter deals with bivariate and multivariate exploratory statistics and graphics.
The fourth chapter is dedicated to data exploration with Principal Component Analysis.
The fifth chapter is dedicated to data exploration with Correspondance Analysis.
The sixth chapter is dedicated to data exploration with Multiple Correspondance Analysis.
The seventh chapter is dedicated to data exploration with automatic clustering.
The eighth chapter is dedicated to an introduction to probability theory and classical probability distributions.
The ni [...truncated...]
Author: Frederic Bertrand [cre, aut] ,
Claire Borsenberger [ctb],
Christian Derquenne [ctb],
Gilles Dufrenot [ctb],
Fredj Jawadi [ctb],
Myriam Maumy-Bertrand [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between sageR versions 0.6.0 dated 2022-09-21 and 0.6.1 dated 2023-03-23
DESCRIPTION | 8 +-- MD5 | 10 +-- NEWS.md | 4 + inst/CITATION | 28 +++++------ inst/doc/AllLinksExtVignettes.html | 94 ++++++++++++++++++------------------- man/presid_2012.Rd | 4 - 6 files changed, 75 insertions(+), 73 deletions(-)
Title: Get the Same, Personal, Free 'TCP' Port over and over
Description: An implementation of the cross-platform, language-independent "port4me" algorithm (<https://github.com/HenrikBengtsson/port4me>), which (1) finds a free Transmission Control Protocol ('TCP') port in [1024,65535] that the user can open, (2) is designed to work in multi-user environments, (3), gives different users, different ports, (4) gives the user the same port over time with high probability, (5) gives different ports for different software tools, and (6) requires no configuration.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between port4me versions 0.5.0 dated 2022-10-29 and 0.5.1 dated 2023-03-23
DESCRIPTION | 8 MD5 | 15 - NEWS.md | 10 - R/port4me.R | 6 build/vignette.rds |binary inst/doc/port4me-overview.R |only inst/doc/port4me-overview.Rmd | 141 ++++++++------- inst/doc/port4me-overview.html | 379 +++++++++++++++-------------------------- vignettes/port4me-overview.Rmd | 141 ++++++++------- 9 files changed, 319 insertions(+), 381 deletions(-)
Title: Preprocessing Operators and Pipelines for 'mlr3'
Description: Dataflow programming toolkit that enriches 'mlr3' with a diverse
set of pipelining operators ('PipeOps') that can be composed into graphs.
Operations exist for data preprocessing, model fitting, and ensemble
learning. Graphs can themselves be treated as 'mlr3' 'Learners' and can
therefore be resampled, benchmarked, and tuned.
Author: Martin Binder [aut, cre],
Florian Pfisterer [aut] ,
Lennart Schneider [aut] ,
Bernd Bischl [aut] ,
Michel Lang [aut] ,
Susanne Dandl [aut]
Maintainer: Martin Binder <mlr.developer@mb706.com>
Diff between mlr3pipelines versions 0.4.2 dated 2022-09-20 and 0.4.3 dated 2023-03-23
DESCRIPTION | 8 MD5 | 290 +++++++++++++++---------------- NEWS.md | 5 R/GraphLearner.R | 28 ++ R/PipeOp.R | 2 R/PipeOpBoxCox.R | 2 R/PipeOpBranch.R | 2 R/PipeOpChunk.R | 2 R/PipeOpClassBalancing.R | 2 R/PipeOpClassWeights.R | 2 R/PipeOpClassifAvg.R | 2 R/PipeOpColApply.R | 2 R/PipeOpColRoles.R | 2 R/PipeOpCollapseFactors.R | 2 R/PipeOpCopy.R | 2 R/PipeOpDateFeatures.R | 2 R/PipeOpEncode.R | 2 R/PipeOpEncodeImpact.R | 2 R/PipeOpEncodeLmer.R | 2 R/PipeOpEnsemble.R | 2 R/PipeOpFeatureUnion.R | 2 R/PipeOpFilter.R | 2 R/PipeOpFixFactors.R | 2 R/PipeOpHistBin.R | 2 R/PipeOpICA.R | 2 R/PipeOpImpute.R | 2 R/PipeOpImputeConstant.R | 2 R/PipeOpImputeHist.R | 2 R/PipeOpImputeLearner.R | 2 R/PipeOpImputeMean.R | 2 R/PipeOpImputeMedian.R | 2 R/PipeOpImputeMode.R | 2 R/PipeOpImputeOOR.R | 2 R/PipeOpImputeSample.R | 2 R/PipeOpKernelPCA.R | 2 R/PipeOpLearner.R | 2 R/PipeOpLearnerCV.R | 2 R/PipeOpMissingIndicators.R | 2 R/PipeOpModelMatrix.R | 2 R/PipeOpMultiplicity.R | 6 R/PipeOpMutate.R | 2 R/PipeOpNMF.R | 2 R/PipeOpNOP.R | 2 R/PipeOpOVR.R | 4 R/PipeOpPCA.R | 2 R/PipeOpProxy.R | 2 R/PipeOpQuantileBin.R | 2 R/PipeOpRandomProjection.R | 2 R/PipeOpRandomResponse.R | 2 R/PipeOpRegrAvg.R | 2 R/PipeOpRemoveConstants.R | 2 R/PipeOpRenameColumns.R | 2 R/PipeOpScale.R | 2 R/PipeOpScaleMaxAbs.R | 2 R/PipeOpScaleRange.R | 2 R/PipeOpSelect.R | 2 R/PipeOpSmote.R | 2 R/PipeOpSpatialSign.R | 2 R/PipeOpSubsample.R | 2 R/PipeOpTaskPreproc.R | 4 R/PipeOpTextVectorizer.R | 2 R/PipeOpThreshold.R | 2 R/PipeOpTrafo.R | 10 - R/PipeOpTuneThreshold.R | 2 R/PipeOpUnbranch.R | 2 R/PipeOpVtreat.R | 2 R/PipeOpYeoJohnson.R | 2 R/mlr_pipeops.R | 1 R/po.R | 4 R/utils.R | 31 +++ build/partial.rdb |binary man/PipeOp.Rd | 2 man/PipeOpEnsemble.Rd | 2 man/PipeOpImpute.Rd | 2 man/PipeOpTargetTrafo.Rd | 2 man/PipeOpTaskPreproc.Rd | 2 man/PipeOpTaskPreprocSimple.Rd | 2 man/Selector.Rd | 24 +- man/mlr_pipeops_boxcox.Rd | 2 man/mlr_pipeops_branch.Rd | 2 man/mlr_pipeops_chunk.Rd | 2 man/mlr_pipeops_classbalancing.Rd | 2 man/mlr_pipeops_classifavg.Rd | 2 man/mlr_pipeops_classweights.Rd | 2 man/mlr_pipeops_colapply.Rd | 2 man/mlr_pipeops_collapsefactors.Rd | 2 man/mlr_pipeops_colroles.Rd | 2 man/mlr_pipeops_copy.Rd | 2 man/mlr_pipeops_datefeatures.Rd | 2 man/mlr_pipeops_encode.Rd | 2 man/mlr_pipeops_encodeimpact.Rd | 2 man/mlr_pipeops_encodelmer.Rd | 2 man/mlr_pipeops_featureunion.Rd | 2 man/mlr_pipeops_filter.Rd | 2 man/mlr_pipeops_fixfactors.Rd | 2 man/mlr_pipeops_histbin.Rd | 2 man/mlr_pipeops_ica.Rd | 2 man/mlr_pipeops_imputeconstant.Rd | 2 man/mlr_pipeops_imputehist.Rd | 2 man/mlr_pipeops_imputelearner.Rd | 2 man/mlr_pipeops_imputemean.Rd | 2 man/mlr_pipeops_imputemedian.Rd | 2 man/mlr_pipeops_imputemode.Rd | 2 man/mlr_pipeops_imputeoor.Rd | 2 man/mlr_pipeops_imputesample.Rd | 2 man/mlr_pipeops_kernelpca.Rd | 2 man/mlr_pipeops_learner.Rd | 2 man/mlr_pipeops_learner_cv.Rd | 2 man/mlr_pipeops_missind.Rd | 2 man/mlr_pipeops_modelmatrix.Rd | 2 man/mlr_pipeops_multiplicityexply.Rd | 2 man/mlr_pipeops_multiplicityimply.Rd | 2 man/mlr_pipeops_mutate.Rd | 2 man/mlr_pipeops_nmf.Rd | 4 man/mlr_pipeops_nop.Rd | 2 man/mlr_pipeops_ovrsplit.Rd | 2 man/mlr_pipeops_ovrunite.Rd | 2 man/mlr_pipeops_pca.Rd | 4 man/mlr_pipeops_proxy.Rd | 2 man/mlr_pipeops_quantilebin.Rd | 2 man/mlr_pipeops_randomprojection.Rd | 2 man/mlr_pipeops_randomresponse.Rd | 2 man/mlr_pipeops_regravg.Rd | 2 man/mlr_pipeops_removeconstants.Rd | 2 man/mlr_pipeops_renamecolumns.Rd | 2 man/mlr_pipeops_replicate.Rd | 2 man/mlr_pipeops_scale.Rd | 2 man/mlr_pipeops_scalemaxabs.Rd | 2 man/mlr_pipeops_scalerange.Rd | 2 man/mlr_pipeops_select.Rd | 2 man/mlr_pipeops_smote.Rd | 2 man/mlr_pipeops_spatialsign.Rd | 2 man/mlr_pipeops_subsample.Rd | 2 man/mlr_pipeops_targetinvert.Rd | 2 man/mlr_pipeops_targetmutate.Rd | 2 man/mlr_pipeops_targettrafoscalerange.Rd | 2 man/mlr_pipeops_textvectorizer.Rd | 2 man/mlr_pipeops_threshold.Rd | 2 man/mlr_pipeops_tunethreshold.Rd | 2 man/mlr_pipeops_unbranch.Rd | 2 man/mlr_pipeops_updatetarget.Rd | 2 man/mlr_pipeops_vtreat.Rd | 2 man/mlr_pipeops_yeojohnson.Rd | 2 tests/testthat/test_GraphLearner.R | 51 +++++ tests/testthat/test_dictionary.R | 5 tests/testthat/test_po.R | 13 + 146 files changed, 438 insertions(+), 310 deletions(-)
Title: Proteomics Data Analysis Functions
Description: Data analysis of proteomics experiments by mass spectrometry is supported by this collection of functions mostly dedicated to the analysis of (bottom-up) quantitative (XIC) data.
Fasta-formatted proteomes (eg from UniProt Consortium <doi:10.1093/nar/gky1049>) can be read with automatic parsing and multiple annotation types (like species origin, abbreviated gene names, etc) extracted.
Initial results from multiple software for protein (and peptide) quantitation can be imported (to a common format):
MaxQuant (Tyanova et al 2016 <doi:10.1038/nprot.2016.136>), Fragpipe(da Veiga et al 2020, <doi:10.1038/s41592-020-0912-y>), MassChroq (Valot et al 2011] <doi:10.1002/pmic.201100120>),
OpenMS (<doi:10.1038/nmeth.3959>), ProteomeDiscoverer and Proline (Bouyssie et al 2020 <doi:10.1093/bioinformatics/btaa118>).
Meta-data provided by initial analysis software and/or in sdrf format can be integrated to the analysis.
Quantitative proteomics measurements frequentl [...truncated...]
Author: Wolfgang Raffelsberger [aut, cre]
Maintainer: Wolfgang Raffelsberger <w.raffelsberger@gmail.com>
Diff between wrProteo versions 1.7.1 dated 2023-01-27 and 1.8.0 dated 2023-03-23
DESCRIPTION | 23 MD5 | 153 +- NAMESPACE | 6 R/AAmass.R | 4 R/AucRoc.R | 10 R/VolcanoPlotW2.R | 408 ------ R/cleanListCoNames.R | 48 R/corColumnOrder.R | 142 -- R/countNoOfCommonPeptides.R | 30 R/extrSpeciesAnnot.R | 20 R/extractTestingResults.R | 102 - R/foldChangeArrow2.R | 17 R/isolNAneighb.R | 74 - R/massDeFormula.R | 13 R/matrixNAinspect.R | 6 R/matrixNAneighbourImpute.R | 236 ++- R/plotROC.R | 12 R/razorNoFilter.R | 19 R/readFasta2.R | 28 R/readFragpipeFile.R | 170 -- R/readMassChroQFile.R | 103 - R/readMaxQuantFile.R | 148 -- R/readMaxQuantPeptides.R | 273 ++-- R/readOpenMSFile.R | 11 R/readProlineFile.R | 160 -- R/readProtDiscovFile.R | 491 +++++-- R/readProtDiscovPeptides.R | 77 - R/readSampleMetaData.R | 434 ++++-- R/readSdrf.R | 8 R/readUCSCtable.R | 12 R/readUniProtExport.R | 16 R/removeSampleInList.R | 8 R/replMissingProtNames.R | 7 R/summarizeForROC.R | 4 R/test2grp.R | 10 R/testRobustToNAimputation.R | 12 R/writeFasta2.R | 15 build/vignette.rds |binary inst/doc/wrProteoVignette1.R | 13 inst/doc/wrProteoVignette1.Rmd | 45 inst/doc/wrProteoVignette1.html | 618 ++++----- inst/doc/wrProteoVignetteUPS1.R | 55 inst/doc/wrProteoVignetteUPS1.Rmd | 118 + inst/doc/wrProteoVignetteUPS1.html | 2342 +++++++++++++++++++++---------------- man/AAmass.Rd | 2 man/VolcanoPlotW2.Rd | 27 man/cleanListCoNames.Rd | 10 man/countNoOfCommonPeptides.Rd | 5 man/dot-atomicMasses.Rd |only man/dot-checkKnitrProt.Rd |only man/dot-checkSetupGroups.Rd |only man/dot-commonSpecies.Rd |only man/dot-extrSpecPref.Rd |only man/dot-imputeNA.Rd |only man/dot-plotQuantDistr.Rd |only man/extrSpeciesAnnot.Rd | 5 man/extractTestingResults.Rd | 3 man/foldChangeArrow2.Rd | 5 man/isolNAneighb.Rd | 19 man/massDeFormula.Rd | 2 man/matrixNAneighbourImpute.Rd | 32 man/plotROC.Rd | 5 man/razorNoFilter.Rd | 5 man/readFasta2.Rd | 2 man/readFragpipeFile.Rd | 19 man/readMassChroQFile.Rd | 13 man/readMaxQuantFile.Rd | 14 man/readMaxQuantPeptides.Rd | 67 - man/readOpenMSFile.Rd | 2 man/readProlineFile.Rd | 15 man/readProtDiscovFile.Rd | 31 man/readProtDiscovPeptides.Rd | 22 man/readSampleMetaData.Rd | 12 man/readUCSCtable.Rd | 5 man/readUniProtExport.Rd | 5 man/removeSampleInList.Rd | 5 man/replMissingProtNames.Rd | 3 man/test2grp.Rd | 5 man/writeFasta2.Rd | 1 vignettes/wrProteoVignette1.Rmd | 45 vignettes/wrProteoVignetteUPS1.Rmd | 118 + 81 files changed, 3538 insertions(+), 3467 deletions(-)
Title: Board Game Graphics
Description: Functions to make board game graphics with the 'ggplot2', 'grid', 'rayrender', 'rayvertex', and 'rgl' packages. Specializes in game diagrams, animations, and "Print & Play" layouts for the 'piecepack' <https://www.ludism.org/ppwiki> but can make graphics for other board game systems. Includes configurations for several public domain game systems such as checkers, (double-18) dominoes, go, 'piecepack', playing cards, etc.
Author: Trevor L Davis [aut, cre] ,
Linux Foundation [dtc] ,
Delapouite <https://delapouite.com/> [ill] ,
Creative Commons [ill] ` uses "license badges"
from Creative Commons to describe the generated print-and-play
file's license)
Maintainer: Trevor L Davis <trevor.l.davis@gmail.com>
Diff between piecepackr versions 1.12.2 dated 2022-11-07 and 1.13.1 dated 2023-03-23
piecepackr-1.12.2/piecepackr/tests/testthat/_snaps/game_systems/fudge.svg |only piecepackr-1.13.1/piecepackr/DESCRIPTION | 15 piecepackr-1.13.1/piecepackr/MD5 | 257 +++--- piecepackr-1.13.1/piecepackr/NAMESPACE | 6 piecepackr-1.13.1/piecepackr/NEWS.md | 109 ++ piecepackr-1.13.1/piecepackr/R/animate_piece.R | 14 piecepackr-1.13.1/piecepackr/R/basicPieceGrob.R | 10 piecepackr-1.13.1/piecepackr/R/game_systems.R | 423 ++++++++-- piecepackr-1.13.1/piecepackr/R/pieceGrob-grid.R | 25 piecepackr-1.13.1/piecepackr/R/piecepackr-package.R | 3 piecepackr-1.13.1/piecepackr/R/pp_cfg.R | 22 piecepackr-1.13.1/piecepackr/R/pp_shape.R | 104 +- piecepackr-1.13.1/piecepackr/R/render_piece.R | 4 piecepackr-1.13.1/piecepackr/R/save_print_and_play.R | 80 + piecepackr-1.13.1/piecepackr/R/sysdata.rda |binary piecepackr-1.13.1/piecepackr/R/utils-bleed-grobs.R | 23 piecepackr-1.13.1/piecepackr/R/utils-d10.R |only piecepackr-1.13.1/piecepackr/R/utils-d12.R |only piecepackr-1.13.1/piecepackr/R/utils-d20.R |only piecepackr-1.13.1/piecepackr/R/utils-d4.R |only piecepackr-1.13.1/piecepackr/R/utils-d6.R | 2 piecepackr-1.13.1/piecepackr/R/utils-d8.R |only piecepackr-1.13.1/piecepackr/R/utils-font.R | 61 - piecepackr-1.13.1/piecepackr/R/utils-geometry.R | 52 + piecepackr-1.13.1/piecepackr/R/utils-mat-grobs.R | 55 + piecepackr-1.13.1/piecepackr/R/utils-misc.R | 34 piecepackr-1.13.1/piecepackr/R/utils-op-grobs.R | 25 piecepackr-1.13.1/piecepackr/R/utils-opt.R | 1 piecepackr-1.13.1/piecepackr/R/utils-pips.R | 149 ++- piecepackr-1.13.1/piecepackr/R/utils-transformation.R | 38 piecepackr-1.13.1/piecepackr/README.md | 242 +++-- piecepackr-1.13.1/piecepackr/data/spdx_license_list.rda |binary piecepackr-1.13.1/piecepackr/man/animate_piece.Rd | 6 piecepackr-1.13.1/piecepackr/man/figures/README-polyhedral-1.png |only piecepackr-1.13.1/piecepackr/man/figures/logo.png |binary piecepackr-1.13.1/piecepackr/man/figures/logo.svg | 81 + piecepackr-1.13.1/piecepackr/man/font_utils.Rd | 11 piecepackr-1.13.1/piecepackr/man/game_systems.Rd | 109 +- piecepackr-1.13.1/piecepackr/man/geom_piece.Rd | 20 piecepackr-1.13.1/piecepackr/man/grid.piece.Rd | 16 piecepackr-1.13.1/piecepackr/man/piecepackr-package.Rd | 3 piecepackr-1.13.1/piecepackr/man/pp_cfg.Rd | 9 piecepackr-1.13.1/piecepackr/man/pp_shape.Rd | 31 piecepackr-1.13.1/piecepackr/man/scale_piece.Rd | 1 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/crop_marks/crop-mark-outside-x2.svg | 8 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/crop_marks/crop-mark-outside.svg | 16 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/belt-face-s1.svg | 7 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/diagram-op-ppgf.svg | 28 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/diagram-op.svg | 52 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-face-op.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-face-s2-r5-convex5mat.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-face-s2-r5.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-face-s3-r2.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-face-s4-r1.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/die-layoutrf-opposites-sum-to-5.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/different-sizes.svg | 16 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/draw-components-default.svg | 16 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/draw-components.svg | 16 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-back-s3-r6.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-op.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s1-r1.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s1-r5.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s2-r2.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s2-r6.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s3-r3.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/matchstick-face-s4-r4.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/piece-edges.svg | 12 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/preview-5s.svg | 66 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/preview-6s.svg | 62 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/preview.svg | 70 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/rankdie-layoutrf-suitasace.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/saucer-back.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/saucer-face-s4.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-face-s1.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-face-s5.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-face-s6.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-layoutlf.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-layoutrf-5suits.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-layoutrf-6suits.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitdie-layoutrf.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitrankdie-layoutlf.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitrankdie-layoutrf-5suits.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/suitrankdie-layoutrf-6suits.svg | 30 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-back-svg.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-back-thickborder.svg | 8 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-back-thickgrid.svg | 8 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-back.svg | 8 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-op.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-s1-r1.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-s2-r3.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-s3-r2-suit-as-ace.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tile-face-s3-r2.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/draw_component/tiles-faces.svg | 32 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/alquerque.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/black-joker-no-star.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/checkers.svg | 20 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d10-percentile.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d10.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d12.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d20.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d4.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d6.svg | 151 ++- piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dice-d8.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dominoes-chinese.svg |only piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/dominoes.svg | 126 +- piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/go.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/king-of-stars.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/knight-of-diamonds.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/nine-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/red-joker.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/reversi.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/seven-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/six-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/ten-of-clubs.svg | 6 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/three-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/twelve-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/game_systems/two-morris.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/geom_piece/geom-piece.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/matchsticks-045.svg | 144 +-- piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/oblique-pyramids.svg | 72 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/op-transform-045.svg | 72 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/op-transform-135.svg | 72 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/op-transform-225.svg | 72 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/op-transform-315.svg | 72 - piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/op_transform/rotated-tile-faces.svg | 88 -- piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/pp_shape/add-checkers.svg | 8 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/pp_shape/roundrect.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/render_piece/render-piece-algebraic.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/render_piece/render-piece-cartesian.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/_snaps/render_piece/render-piece.svg | 4 piecepackr-1.13.1/piecepackr/tests/testthat/test-affine.R |only piecepackr-1.13.1/piecepackr/tests/testthat/test-draw_component.R | 16 piecepackr-1.13.1/piecepackr/tests/testthat/test-game_systems.R | 90 +- piecepackr-1.13.1/piecepackr/tests/testthat/test-obj.R | 32 piecepackr-1.13.1/piecepackr/tests/testthat/test-pp_shape.R | 3 piecepackr-1.13.1/piecepackr/tests/testthat/test-render_piece.R | 2 piecepackr-1.13.1/piecepackr/tests/testthat/test-utils.R | 4 137 files changed, 2377 insertions(+), 1577 deletions(-)
Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time
Series Forecasting Framework, aka Finn, can be used to forecast any component of the income
statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time,
Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn want built
to meet the needs of financial analysts to better forecast their businesses within a company, and has
a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] ,
Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>
Diff between finnts versions 0.2.2 dated 2023-02-11 and 0.2.3 dated 2023-03-23
finnts-0.2.2/finnts/R/load_env_info.R |only finnts-0.2.3/finnts/DESCRIPTION | 12 +- finnts-0.2.3/finnts/MD5 | 29 +++--- finnts-0.2.3/finnts/NEWS.md | 6 + finnts-0.2.3/finnts/R/azure_parallel.R | 8 - finnts-0.2.3/finnts/R/configure_forecast_run.R | 26 ------ finnts-0.2.3/finnts/R/forecast_models.R | 32 ------- finnts-0.2.3/finnts/R/forecast_time_series.R | 32 +------ finnts-0.2.3/finnts/R/models.R | 67 ---------------- finnts-0.2.3/finnts/R/utility.R | 2 finnts-0.2.3/finnts/README.md | 2 finnts-0.2.3/finnts/inst/doc/models-used-in-finnts.R | 2 finnts-0.2.3/finnts/inst/doc/models-used-in-finnts.Rmd | 6 - finnts-0.2.3/finnts/inst/doc/models-used-in-finnts.html | 13 --- finnts-0.2.3/finnts/man/forecast_time_series.Rd | 9 -- finnts-0.2.3/finnts/vignettes/models-used-in-finnts.Rmd | 6 - 16 files changed, 46 insertions(+), 206 deletions(-)
Title: Set of Tools to Compute Various Climate Indices
Description: Set of tools to compute metrics and indices for climate analysis.
The package provides functions to compute extreme indices, evaluate the
agreement between models and combine theses models into an ensemble. Multi-model
time series of climate indices can be computed either after averaging the 2-D
fields from different models provided they share a common grid or by combining
time series computed on the model native grid. Indices can be assigned weights
and/or combined to construct new indices.
Author: BSC-CNS [aut, cph],
Nuria Perez-Zanon [aut] ,
An-Chi Ho [cre, ctb],
Nicolau Manubens [ctb],
Alasdair Hunter [aut],
Louis-Philippe Caron [ctb],
Eva Rifa [ctb]
Maintainer: An-Chi Ho <an.ho@bsc.es>
Diff between ClimProjDiags versions 0.3.0 dated 2023-02-28 and 0.3.1 dated 2023-03-23
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 3 +++ R/Subset.R | 42 ++++++++++++++++++++++++++++-------------- man/Subset.Rd | 10 +++++----- 5 files changed, 43 insertions(+), 26 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-24 0.1.1
2020-09-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-09 0.2.3
2020-10-20 0.2.2
2020-06-19 0.2.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-30 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-15 0.1.1
2021-08-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-10 0.2.3
2019-10-08 0.2.2
2018-08-19 0.2.1.1
2018-03-03 0.2.1
2017-07-25 0.2.0
2017-07-03 0.1.0
Title: Feature Selection SVM using Penalty Functions
Description: Support Vector Machine (SVM) classification with simultaneous feature selection using penalty
functions is implemented. The smoothly clipped absolute deviation (SCAD),
'L1-norm', 'Elastic Net' ('L1-norm' and 'L2-norm') and 'Elastic
SCAD' (SCAD and 'L2-norm') penalties are available. The tuning
parameters can be found using either a fixed grid or a interval
search.
Author: Natalia Becker, Wiebke Werft, Axel Benner
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between penalizedSVM versions 1.1.3 dated 2022-05-11 and 1.1.4 dated 2023-03-23
DESCRIPTION | 10 +- MD5 | 23 +++-- NAMESPACE | 66 ++++++++++------- NEWS.md | 9 +- R/plot_EPSGO_params.R | 2 R/run_interval_search.R | 4 - R/scad_L2.svc.R | 4 - R/scad_svc.R | 2 man/EPSGO.Rd | 9 -- man/plot.EPSGO.parms.Rd |only man/simulate.data.Rd | 186 ++++++++++++++++++++++++------------------------ man/svm.1norm.Rd | 2 man/svmfs.Rd | 2 13 files changed, 167 insertions(+), 152 deletions(-)
Title: Fair Data Adaptation with Quantile Preservation
Description: An implementation of the fair data adaptation with quantile
preservation described in Plecko & Meinshausen (2019) <arXiv:1911.06685>.
The adaptation procedure uses the specified causal graph to pre-process the
given training and testing data in such a way to remove the bias caused by
the protected attribute. The procedure uses tree ensembles for quantile
regression.
Author: Drago Plecko [aut, cre],
Nicolas Bennett [aut]
Maintainer: Drago Plecko <drago.plecko@stat.math.ethz.ch>
Diff between fairadapt versions 0.2.4 dated 2022-07-01 and 0.2.5 dated 2023-03-23
DESCRIPTION | 8 +-- MD5 | 25 +++++---- NAMESPACE | 1 NEWS.md | 4 + R/data.R | 4 - R/generics.R | 71 +++++++++++++--------------- R/globals.R |only build/vignette.rds |binary inst/CITATION | 7 +- inst/doc/jss.pdf |binary man/compas.Rd | 2 man/fairadapt-package.Rd | 2 man/gov_census.Rd | 2 tests/testthat/_snaps/generics/auto_cts.png |binary 14 files changed, 65 insertions(+), 61 deletions(-)
Title: Event Study Analysis
Description: Perform Event Studies from through our <https://EventStudyTools.com> Application Programming Interface, parse the results, visualize it, and / or use the results in further analysis.
Author: Dr. Simon Mueller
Maintainer: Dr. Simon Mueller <sm@data-zoo.de>
Diff between EventStudy versions 0.39 dated 2022-09-20 and 0.39.1 dated 2023-03-23
DESCRIPTION | 10 MD5 | 18 - R/zzz.R | 2 README.md | 15 - build/vignette.rds |binary inst/doc/addin_eventstudy.html | 185 ++++++-------- inst/doc/get_started.html | 340 ++++++++++++-------------- inst/doc/howto_eventstudy.html | 440 ++++++++++++++++------------------ inst/doc/parameters.html | 326 +++++++++++-------------- inst/doc/use_case_dieselgate.html | 488 ++++++++++++++++++-------------------- 10 files changed, 865 insertions(+), 959 deletions(-)
Title: Client for Dataverse 4+ Repositories
Description: Provides access to Dataverse APIs <https://dataverse.org/> (versions 4-5),
enabling data search, retrieval, and deposit. For Dataverse versions <= 3.0,
use the archived 'dvn' package <https://cran.r-project.org/package=dvn>.
Author: Shiro Kuriwaki [aut, cre] ,
Will Beasley [aut] ,
Thomas J. Leeper [aut] ,
Philip Durbin [aut] ,
Sebastian Karcher [aut] ,
Jan Kanis [ctb],
Edward Jee [ctb]
Maintainer: Shiro Kuriwaki <shirokuriwaki@gmail.com>
Diff between dataverse versions 0.3.12 dated 2023-01-15 and 0.3.13 dated 2023-03-23
DESCRIPTION | 11 ++++++----- MD5 | 16 ++++++++-------- NEWS.md | 4 ++-- inst/CITATION | 29 +++++++++++++---------------- inst/constants.yml | 4 ++-- inst/doc/A-introduction.html | 17 ++++++++++++----- inst/doc/B-search.html | 23 +++++++++++++++-------- inst/doc/C-download.html | 17 ++++++++++++----- tests/testthat.R | 3 ++- 9 files changed, 72 insertions(+), 52 deletions(-)
Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and
Generalized Linear Models
Description: The c060 package provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models.
Author: Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between c060 versions 0.2-9 dated 2022-03-03 and 0.3-0 dated 2023-03-23
DESCRIPTION | 12 ++++++------ MD5 | 14 +++++++------- NAMESPACE | 4 ++++ NEWS.md | 4 ++++ R/peperr_glmnet.R | 16 ++++++++-------- R/stabilityselection.R | 12 ++++++------ build/partial.rdb |binary inst/CITATION | 10 +++++----- 8 files changed, 40 insertions(+), 32 deletions(-)
Title: Access Data from the Norwegian Parliament API
Description: Functions for retrieving general and specific data from the Norwegian Parliament,
through the Norwegian Parliament API at <https://data.stortinget.no>.
Author: Martin Soeyland [aut, cre]
Maintainer: Martin Soeyland <martin.soyland@stv.uio.no>
Diff between stortingscrape versions 0.1.2 dated 2022-08-26 and 0.1.3 dated 2023-03-23
stortingscrape-0.1.2/stortingscrape/inst/CITATION |only stortingscrape-0.1.3/stortingscrape/DESCRIPTION | 9 stortingscrape-0.1.3/stortingscrape/MD5 | 20 stortingscrape-0.1.3/stortingscrape/NEWS.md |only stortingscrape-0.1.3/stortingscrape/R/get_mp_bio.R | 49 stortingscrape-0.1.3/stortingscrape/R/get_session_questions.R | 26 stortingscrape-0.1.3/stortingscrape/README.md | 48 stortingscrape-0.1.3/stortingscrape/build/vignette.rds |binary stortingscrape-0.1.3/stortingscrape/inst/doc/stortingscrape.html | 725 ++++++---- stortingscrape-0.1.3/stortingscrape/man/figures/logo.png |binary stortingscrape-0.1.3/stortingscrape/man/get_mp_bio.Rd | 11 stortingscrape-0.1.3/stortingscrape/man/get_session_questions.Rd | 8 12 files changed, 582 insertions(+), 314 deletions(-)
More information about stortingscrape at CRAN
Permanent link
Title: Global Triangular and Penta-Hexagonal Grids Based on Tessellated
Icosahedra
Description: Implementation of icosahedral grids in three dimensions. The spherical-triangular tessellation can be set to create grids with custom resolutions. Both the primary triangular and their inverted penta-hexagonal grids can be calculated. Additional functions are provided that allow plotting of the grids and associated data, the interaction of the grids with other raster and vector objects, and treating the grids as a graphs.
Author: Adam T. Kocsis [cre, aut] ,
Deutsche Forschungsgemeinschaft [fnd],
FAU GeoZentrum Nordbayern [fnd]
Maintainer: Adam T. Kocsis <adam.t.kocsis@gmail.com>
Diff between icosa versions 0.10.1 dated 2021-01-12 and 0.11.0 dated 2023-03-23
icosa-0.10.1/icosa/R/plot-2d-facelayer.R |only icosa-0.10.1/icosa/data/tessguide.RData |only icosa-0.10.1/icosa/inst/NEWS.md |only icosa-0.10.1/icosa/inst/doc/icosa.R |only icosa-0.10.1/icosa/inst/doc/icosa.Rmd |only icosa-0.10.1/icosa/inst/doc/icosa.pdf |only icosa-0.10.1/icosa/inst/extdata/land_polygons_z1.dbf |only icosa-0.10.1/icosa/inst/extdata/land_polygons_z1.prj |only icosa-0.10.1/icosa/inst/extdata/land_polygons_z1.shp |only icosa-0.10.1/icosa/inst/extdata/land_polygons_z1.shx |only icosa-0.10.1/icosa/man/tessguide.Rd |only icosa-0.10.1/icosa/vignettes/icosa.Rmd |only icosa-0.11.0/icosa/DESCRIPTION | 49 ++-- icosa-0.11.0/icosa/MD5 | 96 ++++---- icosa-0.11.0/icosa/NAMESPACE | 8 icosa-0.11.0/icosa/NEWS.md |only icosa-0.11.0/icosa/R/data-facelayer-resample.R | 145 +++++++++++++ icosa-0.11.0/icosa/R/data-gridlayer-attributes.R | 9 icosa-0.11.0/icosa/R/data-gridlayer-subset.R | 9 icosa-0.11.0/icosa/R/data.R | 31 ++ icosa-0.11.0/icosa/R/grid-build.R | 100 ++++++++- icosa-0.11.0/icosa/R/grid-lookup.R | 161 ++++++++------- icosa-0.11.0/icosa/R/grid-move.R | 6 icosa-0.11.0/icosa/R/grid-resample.R | 32 +- icosa-0.11.0/icosa/R/grid-sf-polygons.R |only icosa-0.11.0/icosa/R/grid-sp-lines.R | 3 icosa-0.11.0/icosa/R/grid-sp-polygons.R | 4 icosa-0.11.0/icosa/R/plot-2d-data.R |only icosa-0.11.0/icosa/R/plot-2d-grid.R | 115 ++++------ icosa-0.11.0/icosa/R/plot-rgl-facelayer.R | 16 - icosa-0.11.0/icosa/R/plot-rgl-sp3d.R | 17 - icosa-0.11.0/icosa/R/utils-conversion.R | 4 icosa-0.11.0/icosa/R/utils-spherical.R | 31 +- icosa-0.11.0/icosa/R/zzz.R | 19 + icosa-0.11.0/icosa/build/vignette.rds |binary icosa-0.11.0/icosa/data/hexguide.RData |only icosa-0.11.0/icosa/data/triguide.RData |only icosa-0.11.0/icosa/inst/doc/icosa_cran.R |only icosa-0.11.0/icosa/inst/doc/icosa_cran.Rmd |only icosa-0.11.0/icosa/inst/doc/icosa_cran.html |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.VERSION.txt |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.cpg |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.dbf |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.prj |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.shp |only icosa-0.11.0/icosa/inst/extdata/ne_110m_land.shx |only icosa-0.11.0/icosa/man/extract-methods.Rd | 6 icosa-0.11.0/icosa/man/figures |only icosa-0.11.0/icosa/man/gridensity.Rd |only icosa-0.11.0/icosa/man/gridlabs.Rd | 4 icosa-0.11.0/icosa/man/hexagrid-class.Rd | 9 icosa-0.11.0/icosa/man/hexguide.Rd |only icosa-0.11.0/icosa/man/icosa.Rd | 2 icosa-0.11.0/icosa/man/lines-methods.Rd | 13 - icosa-0.11.0/icosa/man/locate.Rd | 3 icosa-0.11.0/icosa/man/newsf.Rd |only icosa-0.11.0/icosa/man/occupied.Rd | 16 - icosa-0.11.0/icosa/man/plot.Rd | 31 ++ icosa-0.11.0/icosa/man/resample.Rd | 13 - icosa-0.11.0/icosa/man/surfacecentroid.Rd | 4 icosa-0.11.0/icosa/man/trigrid-class.Rd | 10 icosa-0.11.0/icosa/man/triguide.Rd |only icosa-0.11.0/icosa/man/values.Rd | 3 icosa-0.11.0/icosa/src/RcppExports.cpp | 5 icosa-0.11.0/icosa/vignettes/icosa_cran.Rmd |only 65 files changed, 655 insertions(+), 319 deletions(-)
Title: Analytics & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine
learning tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Exploratory, API, and Scrapper, it helps the analyst or data scientist to get quick and robust
results, without the need of repetitive coding or extensive R programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.2.0 dated 2023-02-03 and 5.2.1 dated 2023-03-23
DESCRIPTION | 6 - MD5 | 48 +++++----- NAMESPACE | 8 + R/audio.R | 16 ++- R/chatgpt.R |only R/forecasting.R | 2 R/frequencies.R | 19 ---- R/wrangling.R | 4 inst/doc/h2o_automl.html | 220 +++++++++++++++++++++++------------------------ man/bring_api.Rd | 1 man/fb_accounts.Rd | 1 man/fb_ads.Rd | 1 man/fb_creatives.Rd | 1 man/fb_insights.Rd | 1 man/fb_process.Rd | 1 man/fb_report_check.Rd | 1 man/fb_rf.Rd | 1 man/fb_token.Rd | 1 man/freqs_df.Rd | 7 - man/freqs_plot.Rd | 14 -- man/get_mp3.Rd | 7 + man/gpt_ask.Rd |only man/li_auth.Rd | 1 man/li_profile.Rd | 1 man/queryGA.Rd | 1 man/slackSend.Rd | 1 26 files changed, 186 insertions(+), 178 deletions(-)
Title: Stable Iterative Variable Selection
Description: An iterative feature selection method (manuscript submitted) that
internally utilizes various Machine Learning methods that have embedded
feature reduction in order to shrink down the feature space into a small
and yet robust set.
Author: Mehrad Mahmoudian [aut, cre] ,
Mikko Venaelaeinen [aut, rev] ,
Riku Klen [aut, ths] ,
Laura Elo [aut, ths, fnd]
Maintainer: Mehrad Mahmoudian <mehrad.mahmoudian@utu.fi>
Diff between sivs versions 0.2.7 dated 2023-02-06 and 0.2.9 dated 2023-03-23
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 9 +++++++++ R/is.sivs.R | 5 +++-- build/vignette.rds |binary 6 files changed, 24 insertions(+), 13 deletions(-)
Title: Seeded-LDA for Topic Modeling
Description: Implements the seeded-LDA model (Lu, Ott, Cardie & Tsou 2010) <doi:10.1109/ICDMW.2011.125> using the quanteda package and the GibbsLDA++ library for semisupervised topic modeling.
Seeded-LDA allows users to pre-define topics with keywords to perform theory-driven analysis of textual data in social sciences and humanities (Watanabe & Zhou 2020) <doi:10.1177/0894439320907027>.
Author: Kohei Watanabe [aut, cre, cph],
Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between seededlda versions 0.8.3 dated 2023-03-17 and 0.8.4 dated 2023-03-23
DESCRIPTION | 8 MD5 | 46 +-- NAMESPACE | 44 +- NEWS.md | 80 ++--- R/RcppExports.R | 14 R/data.R | 22 - R/lda.R | 198 ++++++------- R/predict.R | 64 ++-- R/seededlda.R | 432 ++++++++++++++-------------- R/utils.R | 134 ++++---- man/data_corpus_moviereviews.Rd | 30 - man/divergence.Rd | 74 ++-- man/predict.textmodel_lda.Rd | 182 +++++------ man/print.textmodel_lda.Rd | 34 +- man/sizes.Rd | 28 - man/terms.Rd | 38 +- man/textmodel_seededlda.Rd | 264 ++++++++--------- man/topics.Rd | 48 +-- tests/data/topics.yml | 10 tests/testthat.R | 6 tests/testthat/test-internal.R | 156 +++++----- tests/testthat/test-textmodel_lda.R | 456 +++++++++++++++--------------- tests/testthat/test-textmodel_seededlda.R | 362 +++++++++++------------ tests/testthat/test-utils.R | 158 +++++----- 24 files changed, 1446 insertions(+), 1442 deletions(-)
Title: Gene Analysis Toolkit
Description: An analysis toolkit focused on genes. It mainly includes five
features (search, convert, analysis, plot, and export).
The user just needs to input feature id ('entrez', 'symbol', 'ensembl' or
'uniprot') to retrieve feature information and 'PubMed'<https://pubmed.ncbi.nlm.nih.gov/> records,
to convert id types, to easily handle gene enrichment analysis and publication-level figures,
to plot group interaction and export results as sheets in one 'excel'
file to easily share and communicate with others.
Author: Yunze Liu [aut, cre]
Maintainer: Yunze Liu <jieandze1314@gmail.com>
Diff between genekitr versions 1.1.3 dated 2023-03-01 and 1.1.5 dated 2023-03-23
DESCRIPTION | 6 +-- MD5 | 14 +++---- R/genInfo.R | 105 ++++++++++++++++++++++-------------------------------- R/genORA.R | 6 +-- R/plotEnrich.R | 18 --------- README.md | 4 +- man/genORA.Rd | 6 +-- man/plotEnrich.Rd | 18 --------- 8 files changed, 63 insertions(+), 114 deletions(-)
Title: Helpers for Developing Command Line Interfaces
Description: A suite of tools to build attractive command line interfaces
('CLIs'), from semantic elements: headings, lists, alerts, paragraphs,
etc. Supports custom themes via a 'CSS'-like language. It also
contains a number of lower level 'CLI' elements: rules, boxes, trees,
and 'Unicode' symbols with 'ASCII' alternatives. It support ANSI
colors and text styles as well.
Author: Gabor Csardi [aut, cre],
Hadley Wickham [ctb],
Kirill Mueller [ctb],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between cli versions 3.6.0 dated 2023-01-09 and 3.6.1 dated 2023-03-23
cli-3.6.0/cli/tests/testthat/_snaps/1.0.6 |only cli-3.6.1/cli/DESCRIPTION | 6 cli-3.6.1/cli/MD5 | 142 ++++++++++---------- cli-3.6.1/cli/NEWS.md | 4 cli-3.6.1/cli/R/aab-rstudio-detect.R | 2 cli-3.6.1/cli/R/ansi-hyperlink.R | 12 - cli-3.6.1/cli/R/bullets.R | 4 cli-3.6.1/cli/R/cli.R | 23 +++ cli-3.6.1/cli/R/cliapp-docs.R | 6 cli-3.6.1/cli/R/errors.R | 83 ++++++++--- cli-3.6.1/cli/R/format-conditions.R | 2 cli-3.6.1/cli/R/progress-along.R | 4 cli-3.6.1/cli/R/progress-bar.R | 1 cli-3.6.1/cli/R/progress-client.R | 12 + cli-3.6.1/cli/R/progress-server.R | 1 cli-3.6.1/cli/R/progress-utils.R | 3 cli-3.6.1/cli/R/progress-variables.R | 1 cli-3.6.1/cli/R/rlang.R | 2 cli-3.6.1/cli/R/status-bar.R | 10 + cli-3.6.1/cli/man/cli_abort.Rd | 27 +++ cli-3.6.1/cli/man/cli_alert.Rd | 27 +++ cli-3.6.1/cli/man/cli_blockquote.Rd | 27 +++ cli-3.6.1/cli/man/cli_bullets.Rd | 27 +++ cli-3.6.1/cli/man/cli_bullets_raw.Rd | 26 +++ cli-3.6.1/cli/man/cli_dl.Rd | 27 +++ cli-3.6.1/cli/man/cli_h1.Rd | 27 +++ cli-3.6.1/cli/man/cli_li.Rd | 27 +++ cli-3.6.1/cli/man/cli_ol.Rd | 27 +++ cli-3.6.1/cli/man/cli_process_start.Rd | 26 +++ cli-3.6.1/cli/man/cli_progress_along.Rd | 37 +++++ cli-3.6.1/cli/man/cli_progress_bar.Rd | 37 +++++ cli-3.6.1/cli/man/cli_progress_builtin_handlers.Rd | 12 + cli-3.6.1/cli/man/cli_progress_message.Rd | 37 +++++ cli-3.6.1/cli/man/cli_progress_output.Rd | 38 +++++ cli-3.6.1/cli/man/cli_progress_step.Rd | 38 +++++ cli-3.6.1/cli/man/cli_progress_styles.Rd | 12 + cli-3.6.1/cli/man/cli_rule.Rd | 27 +++ cli-3.6.1/cli/man/cli_status.Rd | 26 +++ cli-3.6.1/cli/man/cli_status_update.Rd | 26 +++ cli-3.6.1/cli/man/cli_text.Rd | 27 +++ cli-3.6.1/cli/man/cli_ul.Rd | 27 +++ cli-3.6.1/cli/man/figures/demo-spinners.svg | 2 cli-3.6.1/cli/man/figures/get-spinner.svg | 2 cli-3.6.1/cli/man/figures/make-spinner-custom.svg | 2 cli-3.6.1/cli/man/figures/make-spinner-default.svg | 2 cli-3.6.1/cli/man/figures/make-spinner-template.svg | 2 cli-3.6.1/cli/man/figures/progress-1.svg | 2 cli-3.6.1/cli/man/figures/progress-after.svg | 2 cli-3.6.1/cli/man/figures/progress-along-1.svg | 2 cli-3.6.1/cli/man/figures/progress-along-2.svg | 2 cli-3.6.1/cli/man/figures/progress-along-3.svg | 2 cli-3.6.1/cli/man/figures/progress-clear.svg | 2 cli-3.6.1/cli/man/figures/progress-current.svg | 2 cli-3.6.1/cli/man/figures/progress-format.svg | 2 cli-3.6.1/cli/man/figures/progress-message.svg | 2 cli-3.6.1/cli/man/figures/progress-natotal.svg | 2 cli-3.6.1/cli/man/figures/progress-output.svg | 2 cli-3.6.1/cli/man/figures/progress-output2.svg | 2 cli-3.6.1/cli/man/figures/progress-step-dynamic.svg | 2 cli-3.6.1/cli/man/figures/progress-step-msg.svg | 2 cli-3.6.1/cli/man/figures/progress-step-spin.svg | 2 cli-3.6.1/cli/man/figures/progress-step.svg | 2 cli-3.6.1/cli/man/figures/progress-tasks.svg | 2 cli-3.6.1/cli/man/format_error.Rd | 27 +++ cli-3.6.1/cli/man/format_inline.Rd | 27 +++ cli-3.6.1/cli/man/inline-markup.Rd | 3 cli-3.6.1/cli/man/progress-utils.Rd | 13 + cli-3.6.1/cli/man/progress-variables.Rd | 12 + cli-3.6.1/cli/src/sha1.c | 2 cli-3.6.1/cli/tests/testthat/_snaps/rlang-1.1.0 |only cli-3.6.1/cli/tests/testthat/_snaps/rlang-errors.md | 30 ---- cli-3.6.1/cli/tests/testthat/test-ansi-hyperlink.R | 25 +-- cli-3.6.1/cli/tests/testthat/test-rlang-errors.R | 8 - 73 files changed, 930 insertions(+), 191 deletions(-)
Title: Automatic Interpolation Package
Description: An automatic interpolation is done by automatically estimating the variogram and then calling gstat. An overview is given by Hiemstra et al (2008) <doi:10.1016/j.cageo.2008.10.011>.
Author: Paul Hiemstra [aut],
Jon Olav Skoien [aut, cre]
Maintainer: Jon Olav Skoien <jon.skoien@gmail.com>
Diff between automap versions 1.1-1 dated 2023-02-28 and 1.1-9 dated 2023-03-23
DESCRIPTION | 10 +++++----- MD5 | 24 ++++++++++++------------ R/autoKrige.cv.r | 6 +++--- R/plot.autoKrige.r | 4 +--- R/plot.posPredictionInterval.r | 2 +- man/autoKrige.rd | 3 +++ man/autoKrige_cv.rd | 2 +- man/autofitVariogram.rd | 5 ++--- man/compare.cv.rd | 5 ++--- man/plot.autoKrige.rd | 1 + tests/autoKrige.cv.R | 1 + tests/autoKrige.cv.Rout.save | 15 ++++----------- tests/automap.Rout.save | 12 ++++-------- 13 files changed, 40 insertions(+), 50 deletions(-)
Title: Package Admix for Admixture (aka Contamination) Models
Description: Implements techniques to estimate the unknown quantities related
to two-component admixture models, where the two components can belong to any
distribution (note that in the case of multinomial mixtures, the two components
must belong to the same family). Estimation methods depend on the assumptions
made on the unknown component density (see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>;
Patra and Sen (2016) <doi:10.1111/rssb.12148>); Milhaud, Pommeret, Salhi and Vandekerkhove
(2022) <doi:10.1016/j.jspi.2021.05.010>). In practice, one can estimate both the
mixture weight and the unknown component density in a wide variety of frameworks.
On top of that, hypothesis tests can be performed in one and two-sample contexts
to test the unknown component density (see Milhaud, Pommeret, Salhi, Vandekerkhove (2023)).
Finally, clustering of unknown mixture components is also feasible in a K-samples setting.
Author: Xavier Milhaud [aut, cre],
Pierre Vandekerkhove [ctb],
Denys Pommeret [ctb],
Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research@gmail.com>
Diff between admix versions 0.4.0 dated 2022-03-25 and 2.1-0 dated 2023-03-23
admix-0.4.0/admix/R/decontamin_density_unknownComp.R |only admix-0.4.0/admix/R/plot_admix.R |only admix-0.4.0/admix/R/plot_decontamin_density.R |only admix-0.4.0/admix/R/silhouette_criterion.R |only admix-0.4.0/admix/man/decontamin_density_unknownComp.Rd |only admix-0.4.0/admix/man/plot_admix.Rd |only admix-0.4.0/admix/man/plot_decontamin_density.Rd |only admix-0.4.0/admix/man/silhouette_criterion.Rd |only admix-2.1-0/admix/DESCRIPTION | 26 admix-2.1-0/admix/MD5 | 120 +- admix-2.1-0/admix/NAMESPACE | 11 admix-2.1-0/admix/R/BVdk_estimParam.R | 2 admix-2.1-0/admix/R/BVdk_varCov_estimators.R | 2 admix-2.1-0/admix/R/IBM_estimProp.R | 22 admix-2.1-0/admix/R/IBM_k_samples_test.R | 391 +++---- admix-2.1-0/admix/R/IBM_tabul_stochasticInteg.R | 8 admix-2.1-0/admix/R/IBM_test_H0.R | 111 + admix-2.1-0/admix/R/PatraSen_cv_mixmodel.R | 2 admix-2.1-0/admix/R/PatraSen_density_est.R | 2 admix-2.1-0/admix/R/PatraSen_dist_calc.R | 6 admix-2.1-0/admix/R/PatraSen_est_mix_model.R | 2 admix-2.1-0/admix/R/RcppExports.R | 4 admix-2.1-0/admix/R/admix-package.R | 1 admix-2.1-0/admix/R/admix_clustering.R | 96 + admix-2.1-0/admix/R/admix_estim.R | 18 admix-2.1-0/admix/R/admix_test.R | 35 admix-2.1-0/admix/R/decontaminated_density.R |only admix-2.1-0/admix/R/gaussianity_test.R | 15 admix-2.1-0/admix/R/knownComp_to_uniform.R | 4 admix-2.1-0/admix/R/orthoBasis_test_H0.R | 30 admix-2.1-0/admix/R/plot.decontamined_dens.R |only admix-2.1-0/admix/R/plot_mixt_density.R |only admix-2.1-0/admix/R/print.admix_cluster.R |only admix-2.1-0/admix/R/print.admix_estim.R |only admix-2.1-0/admix/R/print.admix_test.R |only admix-2.1-0/admix/R/rsimmix.R | 6 admix-2.1-0/admix/R/two_samples_test.R | 28 admix-2.1-0/admix/R/zzz.R |only admix-2.1-0/admix/README.md | 6 admix-2.1-0/admix/build/partial.rdb |only admix-2.1-0/admix/build/vignette.rds |binary admix-2.1-0/admix/inst/WORDLIST |only admix-2.1-0/admix/inst/doc/admixture-clustering.html | 396 +++++-- admix-2.1-0/admix/inst/doc/admixture-weight-estimation.R | 14 admix-2.1-0/admix/inst/doc/admixture-weight-estimation.Rmd | 14 admix-2.1-0/admix/inst/doc/admixture-weight-estimation.html | 461 ++++++-- admix-2.1-0/admix/inst/doc/test-hypothesis.R | 8 admix-2.1-0/admix/inst/doc/test-hypothesis.Rmd | 8 admix-2.1-0/admix/inst/doc/test-hypothesis.html | 556 +++++++--- admix-2.1-0/admix/man/BVdk_varCov_estimators.Rd | 2 admix-2.1-0/admix/man/IBM_k_samples_test.Rd | 9 admix-2.1-0/admix/man/IBM_test_H0.Rd | 39 admix-2.1-0/admix/man/admix-package.Rd | 12 admix-2.1-0/admix/man/admix_clustering.Rd | 10 admix-2.1-0/admix/man/admix_estim.Rd | 3 admix-2.1-0/admix/man/admix_test.Rd | 16 admix-2.1-0/admix/man/decontaminated_density.Rd |only admix-2.1-0/admix/man/gaussianity_test.Rd | 7 admix-2.1-0/admix/man/knownComp_to_uniform.Rd | 4 admix-2.1-0/admix/man/orthoBasis_test_H0.Rd | 16 admix-2.1-0/admix/man/plot.decontaminated_dens.Rd |only admix-2.1-0/admix/man/plot_mixt_density.Rd |only admix-2.1-0/admix/man/print.admix_cluster.Rd |only admix-2.1-0/admix/man/print.admix_estim.Rd |only admix-2.1-0/admix/man/print.admix_test.Rd |only admix-2.1-0/admix/man/rsimmix.Rd | 2 admix-2.1-0/admix/man/rsimmix_mix.Rd | 4 admix-2.1-0/admix/man/two_samples_test.Rd | 12 admix-2.1-0/admix/src/RcppExports.cpp | 5 admix-2.1-0/admix/tests/spelling.R |only admix-2.1-0/admix/tests/testthat/test-IBM_estimVarCov_gaussVect.R | 10 admix-2.1-0/admix/vignettes/admixture-weight-estimation.Rmd | 14 admix-2.1-0/admix/vignettes/test-hypothesis.Rmd | 8 73 files changed, 1783 insertions(+), 795 deletions(-)
Title: Project Future Case Incidence
Description: Provides functions and graphics for projecting daily incidence based on past incidence, and estimates of the serial interval and reproduction number. Projections are based on a branching process using a Poisson-distributed number of new cases per day, similar to the model used for estimating R in 'EpiEstim' or in 'earlyR', and described by Nouvellet et al. (2017) <doi:10.1016/j.epidem.2017.02.012>. The package provides the S3 class 'projections' which extends 'matrix', with accessors and additional helpers for handling, subsetting, merging, or adding these objects, as well as dedicated printing and plotting methods.
Author: Thibaut Jombart [aut, cre],
Pierre Nouvellet [aut],
Sangeeta Bhatia [ctb],
Zhian N. Kamvar [ctb],
Tim Taylor [ctb],
Stephane Ghozzi [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between projections versions 0.5.4 dated 2021-04-22 and 0.6.0 dated 2023-03-23
DESCRIPTION | 8 MD5 | 60 NEWS.md | 8 R/compute_force_infection.R | 2 R/compute_relative_infectivity.R |only R/global.R |only R/plot.projections.R | 14 R/project.R | 25 man/build_projections.Rd | 4 man/cumulate.projections.Rd | 2 man/merge_add_projections.Rd | 10 man/merge_projections.Rd | 4 man/plot.projections.Rd | 2 man/project.Rd | 62 man/projections_accessors.Rd | 2 man/subset.Rd | 2 man/summary.projections.Rd | 42 tests/testthat/_snaps/plots/basic-example-plot.svg | 41 tests/testthat/_snaps/plots/evd-proj-box-no-outliers.svg | 287 - tests/testthat/_snaps/plots/evd-proj-box-only.svg | 265 - tests/testthat/_snaps/plots/evd-proj-full-red-ribbon-narrow-range.svg | 31 tests/testthat/_snaps/plots/evd-proj-no-box-custom-lines.svg | 47 tests/testthat/_snaps/plots/evd-proj-no-ribbon.svg | 41 tests/testthat/_snaps/plots/evd-proj-red-box.svg | 287 - tests/testthat/_snaps/plots/evd-proj-red-ribbon.svg | 31 tests/testthat/_snaps/plots/evd-proj-ribbon-only.svg | 31 tests/testthat/_snaps/plots/evd-proj-with-incidence-incidence-and-custom.svg | 457 - tests/testthat/_snaps/plots/evd-proj-with-incidence-incidence-box-only.svg | 1043 +-- tests/testthat/_snaps/plots/evd-proj-with-incidence-incidence-no-box.svg | 1065 ++-- tests/testthat/_snaps/plots/evd-proj-with-incidence-incidence.svg | 825 +-- tests/testthat/_snaps/plots/evd-proj.svg | 47 tests/testthat/_snaps/project.md | 2622 +++++----- 32 files changed, 3713 insertions(+), 3654 deletions(-)
Title: Charles's Utility Function using Formula
Description: Utility functions that provides wrapper to descriptive base functions
like cor, mean and table. It makes use of the formula interface to pass
variables to functions. It also provides operators to concatenate (%+%), to
repeat (%n%) and manage character vectors for nice display.
Author: Charles-Édouard Giguere
Maintainer: Charles-Édouard Giguere <ce.giguere@gmail.com>
Diff between CUFF versions 1.8 dated 2022-02-22 and 1.9 dated 2023-03-23
ChangeLog | 7 +++++ DESCRIPTION | 12 ++++---- MD5 | 22 +++++++-------- NAMESPACE | 7 ++--- R/cf.R | 84 +++++++++++++++++++++++++++++++++++++----------------------- R/clip.R | 42 ++++++++---------------------- R/corr.R | 37 ++++++++++++-------------- R/cross.R | 76 ++++++++++++++++++++++-------------------------------- R/freq.R | 29 ++++++++++++-------- R/to_csv.r | 20 +++++++------- R/xyboth.R | 11 ++----- man/clip.Rd | 3 -- 12 files changed, 171 insertions(+), 179 deletions(-)
Title: Counterfactual Explanations
Description: Modular and unified R6-based interface for counterfactual explanation methods.
The following methods are currently implemented: Burghmans et al. (2022) <arXiv:2104.07411>,
Dandl et al. (2020) <doi:10.1007/978-3-030-58112-1_31> and Wexler et al. (2019) <doi:10.1109/TVCG.2019.2934619>.
Optional extensions allow these methods to be applied to a variety of models and use cases.
Once generated, the counterfactuals can be analyzed and visualized by provided functionalities.
Author: Susanne Dandl [aut, cre] ,
Andreas Hofheinz [aut],
Martin Binder [ctb],
Giuseppe Casalicchio [ctb]
Maintainer: Susanne Dandl <dandls.datascience@gmail.com>
Diff between counterfactuals versions 0.1.1 dated 2023-02-13 and 0.1.2 dated 2023-03-23
DESCRIPTION | 12 MD5 | 20 NEWS.md | 8 R/Counterfactuals.R | 54 +- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/how-to-add-new-cf-methods.html | 521 ++++++++++++---------- inst/doc/introduction.html | 725 +++++++++++++++++++++----------- inst/doc/other_models.html | 323 +++++++------- man/Counterfactuals.Rd | 2 11 files changed, 1004 insertions(+), 665 deletions(-)
More information about counterfactuals at CRAN
Permanent link
Title: Compute the Median Ranking(s) According to the Kemeny's
Axiomatic Approach
Description: Compute the median ranking according to the Kemeny's axiomatic approach.
Rankings can or cannot contain ties, rankings can be both complete or incomplete.
The package contains both branch-and-bound algorithms and heuristic solutions recently proposed.
The searching space of the solution can either be restricted to the universe of the permutations or unrestricted to all possible ties.
The package also provide some useful utilities for deal with preference rankings, including both element-weight Kemeny distance and correlation coefficient.
This release declare as deprecated some functions that are still in the package for compatibility. Next release will not contains these functions.
Please type '?ConsRank-deprecated'
Essential references:
Emond, E.J., and Mason, D.W. (2002) <doi:10.1002/mcda.313>;
D'Ambrosio, A., Amodio, S., and Iorio, C. (2015) <doi:10.1285/i20705948v8n2p198>;
Amodio, S., D'Ambrosio, A., and Siciliano R. (2016) <doi:10.1016/j.ejor.2015.08.048>;
D'Ambr [...truncated...]
Author: Antonio D'Ambrosio [aut, cre],
Sonia Amodio [ctb],
Giulio Mazzeo [ctb],
Alessandro Albano [ctb],
Antonella Plaia [ctb]
Maintainer: Antonio D'Ambrosio <antdambr@unina.it>
Diff between ConsRank versions 2.1.2 dated 2021-09-28 and 2.1.3 dated 2023-03-23
DESCRIPTION | 23 +++-- MD5 | 28 ++++--- NAMESPACE | 5 + R/BBFULL.R | 2 R/IWquickcons.R |only R/consrank.R | 171 +++++++++++++++++++++++++++++++++++-------- R/kemenyd.R | 1 R/partitions.R | 2 R/tau_x.R | 1 R/weighted_KemenyDist&TauX.R |only man/BBFULL.Rd | 2 man/consrank.Rd | 3 man/iw_kemenyd.Rd |only man/iw_tau_x.Rd |only man/iwcombinpmatr.Rd |only man/iwquickcons.Rd |only man/kemenyd.Rd | 2 man/tau_x.Rd | 2 18 files changed, 190 insertions(+), 52 deletions(-)
Title: Interface to Species Occurrence Data Sources
Description: A programmatic interface to many species occurrence data sources,
including Global Biodiversity Information Facility ('GBIF'), 'iNaturalist',
'eBird', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet',
Ocean 'Biogeographic' Information System ('OBIS'), and
Atlas of Living Australia ('ALA'). Includes functionality for retrieving
species occurrence data, and combining those data.
Author: Hannah Owens [aut, cre] ,
Vijay Barve [aut] ,
Scott Chamberlain [aut] ,
Karthik Ram [ctb],
Ted Hart [ctb],
rOpenSci [fnd]
Maintainer: Hannah Owens <hannah.owens@gmail.com>
Diff between spocc versions 1.2.1 dated 2023-03-08 and 1.2.2 dated 2023-03-23
DESCRIPTION | 9 +++++---- MD5 | 10 +++++----- NAMESPACE | 4 ++++ NEWS.md | 7 +++++++ R/wkt_bbox.R | 3 ++- R/wkt_vis.r | 10 ++++++---- 6 files changed, 29 insertions(+), 14 deletions(-)
Title: Interface to the Global Biodiversity Information Facility API
Description: A programmatic interface to the Web Service methods
provided by the Global Biodiversity Information Facility (GBIF;
<https://www.gbif.org/developer/summary>). GBIF is a database
of species occurrence records from sources all over the globe.
rgbif includes functions for searching for taxonomic names,
retrieving information on data providers, getting species occurrence
records, getting counts of occurrence records, and using the GBIF
tile map service to make rasters summarizing huge amounts of data.
Author: Scott Chamberlain [aut] ,
Damiano Oldoni [aut] ,
Vijay Barve [ctb] ,
Peter Desmet [ctb] ,
Laurens Geffert [ctb],
Dan Mcglinn [ctb] ,
Karthik Ram [ctb] ,
rOpenSci [fnd] ,
John Waller [aut, cre]
Maintainer: John Waller <jwaller@gbif.org>
Diff between rgbif versions 3.7.5 dated 2023-01-05 and 3.7.6 dated 2023-03-23
rgbif-3.7.5/rgbif/tests/fixtures/count_facet.yml |only rgbif-3.7.5/rgbif/tests/fixtures/networks.yml |only rgbif-3.7.5/rgbif/tests/fixtures/occ_count_fails_well.yml |only rgbif-3.7.5/rgbif/tests/fixtures/occ_facet.yml |only rgbif-3.7.5/rgbif/tests/fixtures/occ_facet_paging.yml |only rgbif-3.7.5/rgbif/tests/fixtures/occ_facet_unknown_facet_var.yml |only rgbif-3.7.5/rgbif/tests/testthat/test-count_facet.r |only rgbif-3.7.5/rgbif/tests/testthat/test-occ_facet.R |only rgbif-3.7.5/rgbif/tests/testthat/tests |only rgbif-3.7.6/rgbif/DESCRIPTION | 16 rgbif-3.7.6/rgbif/MD5 | 377 rgbif-3.7.6/rgbif/NAMESPACE | 7 rgbif-3.7.6/rgbif/NEWS.md | 33 rgbif-3.7.6/rgbif/R/count_facet.r | 233 rgbif-3.7.6/rgbif/R/dataset_search.r | 311 rgbif-3.7.6/rgbif/R/download_predicate_dsl.R | 6 rgbif-3.7.6/rgbif/R/lit_search.R |only rgbif-3.7.6/rgbif/R/name_backbone_checklist.R | 6 rgbif-3.7.6/rgbif/R/occ_count.r | 395 rgbif-3.7.6/rgbif/R/occ_count_.R |only rgbif-3.7.6/rgbif/R/occ_data.R | 33 rgbif-3.7.6/rgbif/R/occ_download.R | 2 rgbif-3.7.6/rgbif/R/occ_facet.R | 141 rgbif-3.7.6/rgbif/R/occ_search.r | 75 rgbif-3.7.6/rgbif/R/organizations.r | 156 rgbif-3.7.6/rgbif/R/rgbif-package.r | 1 rgbif-3.7.6/rgbif/R/zzz.r | 46 rgbif-3.7.6/rgbif/man/dataset_search.Rd | 2 rgbif-3.7.6/rgbif/man/dataset_suggest.Rd | 2 rgbif-3.7.6/rgbif/man/download_predicate_dsl.Rd | 1 rgbif-3.7.6/rgbif/man/lit_search.Rd |only rgbif-3.7.6/rgbif/man/occ_count.Rd | 218 rgbif-3.7.6/rgbif/man/occ_count_.Rd |only rgbif-3.7.6/rgbif/man/occ_data.Rd | 11 rgbif-3.7.6/rgbif/man/occ_facet.Rd | 2 rgbif-3.7.6/rgbif/man/occ_search.Rd | 13 rgbif-3.7.6/rgbif/man/organizations.Rd | 14 rgbif-3.7.6/rgbif/tests/fixtures/dataset_metrics.yml | 24 rgbif-3.7.6/rgbif/tests/fixtures/dataset_metrics_error.yml | 31 rgbif-3.7.6/rgbif/tests/fixtures/dataset_search.yml | 4911 +- rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_keyword.yml | 595 rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_limit.yml | 141 rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_query.yml | 3880 +- rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_repeated_params.yml | 9139 ++--- rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_return.yml | 4911 +- rgbif-3.7.6/rgbif/tests/fixtures/dataset_search_same_length.yml |only rgbif-3.7.6/rgbif/tests/fixtures/dataset_suggest.yml | 3496 +- rgbif-3.7.6/rgbif/tests/fixtures/dataset_suggest_description.yml | 3255 + rgbif-3.7.6/rgbif/tests/fixtures/dataset_suggest_limit.yml | 100 rgbif-3.7.6/rgbif/tests/fixtures/dataset_suggest_query.yml | 685 rgbif-3.7.6/rgbif/tests/fixtures/dataset_suggest_repeated.yml | 4193 +- rgbif-3.7.6/rgbif/tests/fixtures/datasets_checklist.yml |16724 +++++----- rgbif-3.7.6/rgbif/tests/fixtures/datasets_contact.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/datasets_metadata.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/datasets_single.yml | 10 rgbif-3.7.6/rgbif/tests/fixtures/derived_dataset_1.yml | 12 rgbif-3.7.6/rgbif/tests/fixtures/derived_dataset_2.yml | 10 rgbif-3.7.6/rgbif/tests/fixtures/elevation.yml | 24 rgbif-3.7.6/rgbif/tests/fixtures/elevation_geonames_conn.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/elevation_geonames_conn_unauthorized.yml | 16 rgbif-3.7.6/rgbif/tests/fixtures/elevation_models.yml | 64 rgbif-3.7.6/rgbif/tests/fixtures/elevation_unauthorized.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/elevation_warning_zero_zero.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/enumeration.yml | 1017 rgbif-3.7.6/rgbif/tests/fixtures/enumeration_fails_well.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/gbif_citation_datasetkey.yml | 61 rgbif-3.7.6/rgbif/tests/fixtures/gbif_citation_downloadkey.yml | 23 rgbif-3.7.6/rgbif/tests/fixtures/gbif_citation_occ_download_meta.yml | 23 rgbif-3.7.6/rgbif/tests/fixtures/gbif_oai_get_records.yml | 29 rgbif-3.7.6/rgbif/tests/fixtures/gbif_oai_identify.yml | 23 rgbif-3.7.6/rgbif/tests/fixtures/gbif_oai_list_identifiers.yml | 9 rgbif-3.7.6/rgbif/tests/fixtures/gbif_oai_list_metadataformats.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/gbif_oai_list_sets.yml | 2344 - rgbif-3.7.6/rgbif/tests/fixtures/installations.yml | 3766 +- rgbif-3.7.6/rgbif/tests/fixtures/installations_deleted.yml | 145 rgbif-3.7.6/rgbif/tests/fixtures/installations_uuid.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/installations_uuid_data.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/name_backbone.yml | 22 rgbif-3.7.6/rgbif/tests/fixtures/name_backbone_verbose_true.yml | 36 rgbif-3.7.6/rgbif/tests/fixtures/name_issues.yml | 222 rgbif-3.7.6/rgbif/tests/fixtures/name_lookup_habitat.yml | 5275 +-- rgbif-3.7.6/rgbif/tests/fixtures/name_lookup_no_results.yml | 2 rgbif-3.7.6/rgbif/tests/fixtures/name_parse.yml | 22 rgbif-3.7.6/rgbif/tests/fixtures/name_suggest.yml | 2744 - rgbif-3.7.6/rgbif/tests/fixtures/name_suggest_many_args.yml | 58 rgbif-3.7.6/rgbif/tests/fixtures/name_usage.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_children.yml | 325 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_descriptions.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_distributions.yml | 1086 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_iucnRedListCategory.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_media.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_name.yml | 12 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_parents.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_references.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_related.yml | 2500 - rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_speciesProfiles.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_synonyms.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_typeSpecimens.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_data_vernacularNames.yml | 446 rgbif-3.7.6/rgbif/tests/fixtures/name_usage_fails_well.yml | 4 rgbif-3.7.6/rgbif/tests/fixtures/network.yml | 26 rgbif-3.7.6/rgbif/tests/fixtures/network_constituents.yml |12830 +++---- rgbif-3.7.6/rgbif/tests/fixtures/nodes.yml | 6411 +-- rgbif-3.7.6/rgbif/tests/fixtures/occ_count.yml | 334 rgbif-3.7.6/rgbif/tests/fixtures/occ_count_.yml |only rgbif-3.7.6/rgbif/tests/fixtures/occ_count_facet.yml |only rgbif-3.7.6/rgbif/tests/fixtures/occ_count_legacy_params.yml |only rgbif-3.7.6/rgbif/tests/fixtures/occ_data_args_with_many_inputs.yml | 2040 - rgbif-3.7.6/rgbif/tests/fixtures/occ_data_catalog_number.yml | 489 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_coordinateUncertaintyInMeters.yml | 664 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_degreeOfEstablishment.yml | 686 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_depth.yml | 12 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_distanceFromCentroidInMeters.yml |only rgbif-3.7.6/rgbif/tests/fixtures/occ_data_dropped_fields.yml | 325 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_elevation.yml | 186 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_eventId.yml | 950 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_fails_well.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_gadmGid.yml | 663 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_identifiedBy.yml | 1039 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_isInCluster.yml | 622 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_iucnRedListCategory.yml | 1426 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_key_gbifid_character_class.yml | 508 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_lifeStage.yml | 1002 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_networkKey.yml | 1245 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_occurrenceId.yml | 752 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_occurrencestatus.yml | 606 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_organismQuantity.yml | 494 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_organismQuantityType.yml | 326 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_relativeOrganismQuantity.yml | 1148 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_scientificname.yml | 1491 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_speciesKey.yml | 1208 rgbif-3.7.6/rgbif/tests/fixtures/occ_data_verbatimScientificName.yml | 1217 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_1.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_2.yml | 20 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_3.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_4.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_5.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_6.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_7.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_cancel.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_cancel_prep.yml | 18 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_dataset_activity.yml | 48 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_dataset_activity_error.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_datasets.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_datasets_error.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_list.yml | 9 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_list_unauthorized.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_meta.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_meta_na_results.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_meta_with_results.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_queue.yml | 424 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_wait_character.yml | 8 rgbif-3.7.6/rgbif/tests/fixtures/occ_download_wait_request.yml | 352 rgbif-3.7.6/rgbif/tests/fixtures/occ_get.yml | 795 rgbif-3.7.6/rgbif/tests/fixtures/occ_get_other.yml | 296 rgbif-3.7.6/rgbif/tests/fixtures/occ_metadata.yml | 48 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_catalognumber.yml | 2 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_coordinateUncertaintyInMeters.yml | 664 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_degreeOfEstablishment.yml | 686 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_depth.yml | 14 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_distanceFromCentroidInMeters.yml |only rgbif-3.7.6/rgbif/tests/fixtures/occ_search_elevation.yml | 630 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_eventId.yml | 950 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_fails_well.yml | 6 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_gadmGid.yml | 663 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_hierarchy_data.yml | 247 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_identifiedBy.yml | 1039 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_isInCluster.yml | 622 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_iucnRedListCategory.yml | 1426 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_key_gbifid_character_class.yml | 508 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_lifeStage.yml | 1002 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_many_inputs.yml | 2040 - rgbif-3.7.6/rgbif/tests/fixtures/occ_search_networkKey.yml | 1245 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_occurrenceId.yml | 752 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_occurrencestatus.yml | 606 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_organismQuantity.yml | 494 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_organismQuantityType.yml | 326 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_relativeOrganismQuantity.yml | 1148 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_scientificname.yml | 1521 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_speciesKey.yml | 1208 rgbif-3.7.6/rgbif/tests/fixtures/occ_search_verbatimScientificName.yml | 1217 rgbif-3.7.6/rgbif/tests/fixtures/organizations_search_country.yml |only rgbif-3.7.6/rgbif/tests/fixtures/organizations_search_uuid.yml |only rgbif-3.7.6/rgbif/tests/fixtures/wkt_large_occ_data.yml | 9575 ++--- rgbif-3.7.6/rgbif/tests/fixtures/wkt_large_occ_search.yml | 9575 ++--- rgbif-3.7.6/rgbif/tests/testthat/test-dataset_search.r | 197 rgbif-3.7.6/rgbif/tests/testthat/test-elevation.R | 6 rgbif-3.7.6/rgbif/tests/testthat/test-gbif_names.R | 76 rgbif-3.7.6/rgbif/tests/testthat/test-lit_search.R |only rgbif-3.7.6/rgbif/tests/testthat/test-map_fetch.R | 6 rgbif-3.7.6/rgbif/tests/testthat/test-name_usage.r | 7 rgbif-3.7.6/rgbif/tests/testthat/test-occ_count.r | 183 rgbif-3.7.6/rgbif/tests/testthat/test-occ_count_.R |only rgbif-3.7.6/rgbif/tests/testthat/test-occ_data.R | 33 rgbif-3.7.6/rgbif/tests/testthat/test-occ_download_meta.R | 2 rgbif-3.7.6/rgbif/tests/testthat/test-occ_download_prep.R | 3 rgbif-3.7.6/rgbif/tests/testthat/test-occ_search.r | 34 rgbif-3.7.6/rgbif/tests/testthat/test-organizations.r | 104 rgbif-3.7.6/rgbif/tests/testthat/test-predicate_builders.R | 2 rgbif-3.7.6/rgbif/tests/testthat/test-wkt_large.R | 200 rgbif-3.7.6/rgbif/tests/testthat/test-wkt_parse.R | 138 201 files changed, 78613 insertions(+), 76052 deletions(-)
Title: Raw Data Quality Control Tool for LC-MS System
Description: Assess LC–MS system performance by visualizing instrument log
files and monitoring raw quality control samples within a project.
Author: Yonghui Dong [cre, aut]
Maintainer: Yonghui Dong <yonghui.dong@gmail.com>
Diff between RawHummus versions 0.2.3 dated 2022-11-29 and 0.3.0 dated 2023-03-23
RawHummus-0.2.3/RawHummus/R/runGui.R |only RawHummus-0.2.3/RawHummus/README.md |only RawHummus-0.2.3/RawHummus/inst/shiny |only RawHummus-0.2.3/RawHummus/man/runGui.Rd |only RawHummus-0.3.0/RawHummus/DESCRIPTION | 31 +++++++------ RawHummus-0.3.0/RawHummus/LICENSE |only RawHummus-0.3.0/RawHummus/MD5 | 57 ++++++++++++------------ RawHummus-0.3.0/RawHummus/NAMESPACE | 35 +++++++++----- RawHummus-0.3.0/RawHummus/R/app_config.R |only RawHummus-0.3.0/RawHummus/R/app_server.R |only RawHummus-0.3.0/RawHummus/R/app_ui.R |only RawHummus-0.3.0/RawHummus/R/fct_readLogFile.R |only RawHummus-0.3.0/RawHummus/R/mod_contact.R |only RawHummus-0.3.0/RawHummus/R/mod_home.R |only RawHummus-0.3.0/RawHummus/R/mod_logView.R |only RawHummus-0.3.0/RawHummus/R/mod_qcView.R |only RawHummus-0.3.0/RawHummus/R/run_app.R |only RawHummus-0.3.0/RawHummus/build |only RawHummus-0.3.0/RawHummus/inst/app |only RawHummus-0.3.0/RawHummus/inst/doc |only RawHummus-0.3.0/RawHummus/inst/golem-config.yml |only RawHummus-0.3.0/RawHummus/man/run_app.Rd |only RawHummus-0.3.0/RawHummus/vignettes |only 23 files changed, 69 insertions(+), 54 deletions(-)
Title: Multiple Imputation for Proteomics
Description: A framework for multiple imputation for proteomics is proposed by Marie Chion, Christine Carapito and Frederic Bertrand (2021) <arxiv:2108.07086>. It is dedicated to dealing with multiple imputation for proteomics.
Author: Marie Chion [aut] ,
Christine Carapito [aut] ,
Frederic Bertrand [cre, aut] ,
Gordon Smyth [ctb],
Davis McCarthy [ctb],
Helene Borges [ctb],
Thomas Burger [ctb],
Quentin Giai-Gianetto [ctb],
Samuel Wieczorek [ctb]
Maintainer: Frederic Bertrand <frederic.bertrand@utt.fr>
Diff between mi4p versions 1.0 dated 2022-06-13 and 1.1 dated 2023-03-23
DESCRIPTION | 12 ++--- MD5 | 38 +++++++++--------- NEWS.md | 4 + R/check.conditions.R | 6 +- R/check.design.R | 6 +- R/formatLimmaResult.R | 4 - R/make.contrast.R | 2 R/make.design.R | 2 R/mi4limma.R | 5 +- R/test.design.R | 2 build/vignette.rds |binary inst/CITATION | 10 ++-- inst/doc/Intromi4p.html | 98 +++++++++++++++++++++++------------------------ man/check.conditions.Rd | 6 +- man/check.design.Rd | 6 +- man/formatLimmaResult.Rd | 4 - man/make.contrast.Rd | 2 man/make.design.3.Rd | 2 man/mi4limma.Rd | 5 +- man/test.design.Rd | 2 20 files changed, 110 insertions(+), 106 deletions(-)
Title: Landscape Metrics for Categorical Map Patterns
Description: Calculates landscape metrics for categorical landscape patterns in
a tidy workflow. 'landscapemetrics' reimplements the most common metrics from
'FRAGSTATS' (<https://www.umass.edu/landeco/>)
and new ones from the current literature on landscape metrics.
This package supports 'raster' spatial objects and takes
RasterLayer, RasterStacks, RasterBricks or lists of RasterLayer from the
'raster' package as input arguments. It further provides utility functions
to visualize patches, select metrics and building blocks to develop new
metrics.
Author: Maximilian H.K. Hesselbarth [aut, cre]
,
Marco Sciaini [aut] ,
Jakub Nowosad [aut] ,
Sebastian Hanss [aut] ,
Laura J. Graham [ctb] ,
Jeffrey Hollister [ctb] ,
Kimberly A. With [ctb] ,
Florian Prive [ctb] function),
Project Nayuki [ctb] ,
Matt Strima [...truncated...]
Maintainer: Maximilian H.K. Hesselbarth <mhk.hesselbarth@gmail.com>
Diff between landscapemetrics versions 1.5.5 dated 2022-10-31 and 1.5.6 dated 2023-03-23
landscapemetrics-1.5.5/landscapemetrics/src/Makevars |only landscapemetrics-1.5.6/landscapemetrics/DESCRIPTION | 16 landscapemetrics-1.5.6/landscapemetrics/MD5 | 1015 +- landscapemetrics-1.5.6/landscapemetrics/NAMESPACE | 372 landscapemetrics-1.5.6/landscapemetrics/NEWS.md | 452 - landscapemetrics-1.5.6/landscapemetrics/R/RcppExports.R | 218 landscapemetrics-1.5.6/landscapemetrics/R/calculate_correlation.R | 314 landscapemetrics-1.5.6/landscapemetrics/R/calculate_lsm.R | 428 - landscapemetrics-1.5.6/landscapemetrics/R/check_landscape.R | 200 landscapemetrics-1.5.6/landscapemetrics/R/construct_buffer.R | 374 landscapemetrics-1.5.6/landscapemetrics/R/data.R | 250 landscapemetrics-1.5.6/landscapemetrics/R/data_info.R | 80 landscapemetrics-1.5.6/landscapemetrics/R/extract_lsm.R | 452 - landscapemetrics-1.5.6/landscapemetrics/R/get_adjacencies.R | 212 landscapemetrics-1.5.6/landscapemetrics/R/get_boundaries.R | 294 landscapemetrics-1.5.6/landscapemetrics/R/get_centroids.R | 336 landscapemetrics-1.5.6/landscapemetrics/R/get_circumscribingcircle.R | 258 landscapemetrics-1.5.6/landscapemetrics/R/get_nearestneighbour.R | 208 landscapemetrics-1.5.6/landscapemetrics/R/get_patches.R | 348 landscapemetrics-1.5.6/landscapemetrics/R/get_unique_values.R | 158 landscapemetrics-1.5.6/landscapemetrics/R/landscape_as_list.R | 184 landscapemetrics-1.5.6/landscapemetrics/R/landscapemetrics-package.R | 106 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_ai.R | 228 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_area_cv.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_area_mn.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_area_sd.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_ca.R | 170 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_cai_cv.R | 194 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_cai_mn.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_cai_sd.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_circle_cv.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_circle_mn.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_circle_sd.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_clumpy.R | 274 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_cohesion.R | 230 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_contig_cv.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_contig_mn.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_contig_sd.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_core_cv.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_core_mn.R | 182 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_core_sd.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_cpland.R | 214 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_dcad.R | 210 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_dcore_cv.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_dcore_mn.R | 184 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_dcore_sd.R | 194 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_division.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_ed.R | 210 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_enn_cv.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_enn_mn.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_enn_sd.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_frac_cv.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_frac_mn.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_frac_sd.R | 178 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_gyrate_cv.R | 202 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_gyrate_mn.R | 198 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_gyrate_sd.R | 200 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_iji.R | 224 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_lpi.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_lsi.R | 262 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_mesh.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_ndca.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_nlsi.R | 320 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_np.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_pafrac.R | 268 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_para_cv.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_para_mn.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_para_sd.R | 174 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_pd.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_pladj.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_pland.R | 164 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_shape_cv.R | 182 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_shape_mn.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_shape_sd.R | 182 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_split.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_tca.R | 184 landscapemetrics-1.5.6/landscapemetrics/R/lsm_c_te.R | 352 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_ai.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_area_cv.R | 170 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_area_mn.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_area_sd.R | 174 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_cai_cv.R | 198 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_cai_mn.R | 194 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_cai_sd.R | 198 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_circle_cv.R | 184 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_circle_mn.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_circle_sd.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_cohesion.R | 204 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_condent.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_contag.R | 218 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_contig_cv.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_contig_mn.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_contig_sd.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_core_cv.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_core_mn.R | 188 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_core_sd.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_dcad.R | 210 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_dcore_cv.R | 198 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_dcore_mn.R | 192 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_dcore_sd.R | 196 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_division.R | 182 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_ed.R | 208 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_enn_cv.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_enn_mn.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_enn_sd.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_ent.R | 158 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_frac_cv.R | 178 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_frac_mn.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_frac_sd.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_gyrate_cv.R | 202 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_gyrate_mn.R | 196 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_gyrate_sd.R | 200 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_iji.R | 224 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_joinent.R | 168 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_lpi.R | 170 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_lsi.R | 250 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_mesh.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_msidi.R | 182 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_msiei.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_mutinf.R | 184 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_ndca.R | 190 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_np.R | 154 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_pafrac.R | 252 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_para_cv.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_para_mn.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_para_sd.R | 172 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_pd.R | 198 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_pladj.R | 168 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_pr.R | 134 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_prd.R | 168 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_relmutinf.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_rpr.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_shape_cv.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_shape_mn.R | 178 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_shape_sd.R | 178 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_shdi.R | 160 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_shei.R | 169 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_sidi.R | 164 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_siei.R | 168 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_split.R | 176 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_ta.R | 156 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_tca.R | 186 landscapemetrics-1.5.6/landscapemetrics/R/lsm_l_te.R | 264 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_area.R | 228 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_cai.R | 240 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_circle.R | 272 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_contig.R | 302 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_core.R | 274 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_enn.R | 268 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_frac.R | 216 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_gyrate.R | 332 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_ncore.R | 364 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_para.R | 202 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_perim.R | 310 landscapemetrics-1.5.6/landscapemetrics/R/lsm_p_shape.R | 244 landscapemetrics-1.5.6/landscapemetrics/R/matrix_to_raster.R | 202 landscapemetrics-1.5.6/landscapemetrics/R/pad_raster.R | 210 landscapemetrics-1.5.6/landscapemetrics/R/proj_info.R | 100 landscapemetrics-1.5.6/landscapemetrics/R/raster_to_points.R | 126 landscapemetrics-1.5.6/landscapemetrics/R/sample_lsm.R | 784 -- landscapemetrics-1.5.6/landscapemetrics/R/scale_sample.R | 406 - landscapemetrics-1.5.6/landscapemetrics/R/scale_window.R | 392 - landscapemetrics-1.5.6/landscapemetrics/R/show_cores.R | 332 landscapemetrics-1.5.6/landscapemetrics/R/show_correlation.R | 562 - landscapemetrics-1.5.6/landscapemetrics/R/show_lsm.R | 376 landscapemetrics-1.5.6/landscapemetrics/R/show_patches.R | 282 landscapemetrics-1.5.6/landscapemetrics/R/spatialize_lsm.R | 422 - landscapemetrics-1.5.6/landscapemetrics/R/tmp.R |only landscapemetrics-1.5.6/landscapemetrics/R/unpad_raster.R | 180 landscapemetrics-1.5.6/landscapemetrics/R/window_lsm.R | 474 - landscapemetrics-1.5.6/landscapemetrics/R/zzz.R |only landscapemetrics-1.5.6/landscapemetrics/build/vignette.rds |binary landscapemetrics-1.5.6/landscapemetrics/inst/CITATION | 11 landscapemetrics-1.5.6/landscapemetrics/inst/doc/get_started.R | 190 landscapemetrics-1.5.6/landscapemetrics/inst/doc/get_started.Rmd | 360 landscapemetrics-1.5.6/landscapemetrics/inst/doc/get_started.html | 1342 +-- landscapemetrics-1.5.6/landscapemetrics/man/augusta_nlcd.Rd | 46 landscapemetrics-1.5.6/landscapemetrics/man/calculate_correlation.Rd | 76 landscapemetrics-1.5.6/landscapemetrics/man/calculate_lsm.Rd | 208 landscapemetrics-1.5.6/landscapemetrics/man/check_landscape.Rd | 66 landscapemetrics-1.5.6/landscapemetrics/man/construct_buffer.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/data_info.Rd | 54 landscapemetrics-1.5.6/landscapemetrics/man/extract_lsm.Rd | 168 landscapemetrics-1.5.6/landscapemetrics/man/get_adjacencies.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/get_boundaries.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/get_centroids.Rd | 82 landscapemetrics-1.5.6/landscapemetrics/man/get_circumscribingcircle.Rd | 70 landscapemetrics-1.5.6/landscapemetrics/man/get_nearestneighbour.Rd | 72 landscapemetrics-1.5.6/landscapemetrics/man/get_patches.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/get_unique_values.Rd | 76 landscapemetrics-1.5.6/landscapemetrics/man/landscape.Rd | 40 landscapemetrics-1.5.6/landscapemetrics/man/landscape_as_list.Rd | 96 landscapemetrics-1.5.6/landscapemetrics/man/landscapemetrics.Rd | 94 landscapemetrics-1.5.6/landscapemetrics/man/lsm_abbreviations_names.Rd | 54 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_ai.Rd | 96 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_area_cv.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_area_mn.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_area_sd.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_ca.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_cai_cv.Rd | 136 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_cai_mn.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_cai_sd.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_circle_cv.Rd | 124 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_circle_mn.Rd | 120 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_circle_sd.Rd | 120 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_clumpy.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_cohesion.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_contig_cv.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_contig_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_contig_sd.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_core_cv.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_core_mn.Rd | 124 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_core_sd.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_cpland.Rd | 120 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_dcad.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_dcore_cv.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_dcore_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_dcore_sd.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_division.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_ed.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_enn_cv.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_enn_mn.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_enn_sd.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_frac_cv.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_frac_mn.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_frac_sd.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_gyrate_cv.Rd | 132 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_gyrate_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_gyrate_sd.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_iji.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_lpi.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_lsi.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_mesh.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_ndca.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_nlsi.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_np.Rd | 90 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_pafrac.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_para_cv.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_para_mn.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_para_sd.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_pd.Rd | 100 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_pladj.Rd | 84 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_pland.Rd | 96 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_shape_cv.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_shape_mn.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_shape_sd.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_split.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_tca.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_c_te.Rd | 100 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_ai.Rd | 100 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_area_cv.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_area_mn.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_area_sd.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_cai_cv.Rd | 136 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_cai_mn.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_cai_sd.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_circle_cv.Rd | 120 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_circle_mn.Rd | 118 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_circle_sd.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_cohesion.Rd | 96 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_condent.Rd | 94 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_contag.Rd | 106 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_contig_cv.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_contig_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_contig_sd.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_core_cv.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_core_mn.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_core_sd.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_dcad.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_dcore_cv.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_dcore_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_dcore_sd.Rd | 132 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_division.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_ed.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_enn_cv.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_enn_mn.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_enn_sd.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_ent.Rd | 82 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_frac_cv.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_frac_mn.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_frac_sd.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_gyrate_cv.Rd | 132 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_gyrate_mn.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_gyrate_sd.Rd | 130 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_iji.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_joinent.Rd | 90 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_lpi.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_lsi.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_mesh.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_msidi.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_msiei.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_mutinf.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_ndca.Rd | 128 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_np.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_pafrac.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_para_cv.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_para_mn.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_para_sd.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_pd.Rd | 100 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_pladj.Rd | 84 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_pr.Rd | 80 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_prd.Rd | 90 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_relmutinf.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_rpr.Rd | 98 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_shape_cv.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_shape_mn.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_shape_sd.Rd | 112 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_shdi.Rd | 92 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_shei.Rd | 96 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_sidi.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_siei.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_split.Rd | 104 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_ta.Rd | 94 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_tca.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/lsm_l_te.Rd | 94 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_area.Rd | 108 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_cai.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_circle.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_contig.Rd | 132 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_core.Rd | 134 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_enn.Rd | 122 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_frac.Rd | 116 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_gyrate.Rd | 124 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_ncore.Rd | 136 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_para.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_perim.Rd | 88 landscapemetrics-1.5.6/landscapemetrics/man/lsm_p_shape.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/matrix_to_raster.Rd | 94 landscapemetrics-1.5.6/landscapemetrics/man/pad_raster.Rd | 88 landscapemetrics-1.5.6/landscapemetrics/man/podlasie_ccilc.Rd | 40 landscapemetrics-1.5.6/landscapemetrics/man/proj_info.Rd | 54 landscapemetrics-1.5.6/landscapemetrics/man/raster_to_points.Rd | 56 landscapemetrics-1.5.6/landscapemetrics/man/sample_lsm.Rd | 208 landscapemetrics-1.5.6/landscapemetrics/man/scale_sample.Rd | 148 landscapemetrics-1.5.6/landscapemetrics/man/scale_window.Rd | 144 landscapemetrics-1.5.6/landscapemetrics/man/show_cores.Rd | 114 landscapemetrics-1.5.6/landscapemetrics/man/show_correlation.Rd | 102 landscapemetrics-1.5.6/landscapemetrics/man/show_lsm.Rd | 110 landscapemetrics-1.5.6/landscapemetrics/man/show_patches.Rd | 86 landscapemetrics-1.5.6/landscapemetrics/man/spatialize_lsm.Rd | 126 landscapemetrics-1.5.6/landscapemetrics/man/unpad_raster.Rd | 78 landscapemetrics-1.5.6/landscapemetrics/man/window_lsm.Rd | 162 landscapemetrics-1.5.6/landscapemetrics/tests/testthat.R | 12 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/helper-brick.R | 8 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/helper-landscapes.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/helper-points.R | 36 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-calculate-lsm.R | 268 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-check-landscape.R | 160 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-construct-buffer.R | 80 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-different-classes.R | 28 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-extract-lsm.R | 272 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-adjacencies.R | 166 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-boundaries.R | 172 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-centroids.R | 112 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-circumscribungcircle.R | 108 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-nearestneighbour.R | 70 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-patches.R | 64 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-get-unique-values.R | 174 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-landscape_as_list.R | 22 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-ai.R | 68 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-area-cv.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-area-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-area-sd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-ca.R | 52 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-cai-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-cai-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-cai-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-circle-cv.R | 52 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-circle-mn.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-circle-sd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-clumpy.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-cohesion.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-contig-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-contig-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-contig-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-core-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-core-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-core-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-cpland.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-dcad.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-dcore_cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-dcore_mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-dcore_sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-division.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-ed.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-enn-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-enn-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-enn-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-frac-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-frac-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-frac-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-gyrate-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-gyrate-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-gyrate-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-iji.R | 68 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-lpi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-lsi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-mesh.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-ndca.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-nlsi.R | 62 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-np.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-pafrac.R | 76 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-para-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-para-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-para-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-pd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-pladj.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-pland.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-shape-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-shape-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-shape-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-split.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-tca.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-c-te.R | 104 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-ai.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-area-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-area-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-area-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-cai-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-cai-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-cai-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-circle-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-circle-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-circle-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-cohesion.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-condent.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-contag.R | 66 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-contig-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-contig-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-contig-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-core-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-core-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-core-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-dcad.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-dcore-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-dcore-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-dcore-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-division.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-ed.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-enn-cv.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-enn-mn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-enn-sd.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-ent.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-frac-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-frac-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-frac-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-gyrate-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-gyrate-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-gyrate-sd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-iji.R | 68 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-joinent.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-lpi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-lsi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-mesh.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-msidi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-msiei.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-mutinf.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-ndca.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-np.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-pafrac.R | 66 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-para-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-para-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-para-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-pd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-pladj.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-pr.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-prd.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-relmutinf.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-rpr.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-shape-cv.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-shape-mn.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-shape-sd.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-shdi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-shei.R | 55 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-sidi.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-siei.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-split.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-ta.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-tca.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-l-te.R | 114 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-area.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-cai.R | 46 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-circle.R | 56 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-contig.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-core.R | 68 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-enn.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-frac.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-gyrate.R | 62 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-nca.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-para.R | 50 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-perim.R | 54 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-lsm-p-shape.R | 48 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-matrix-to-raster.R | 96 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-options-landscapemetrics.R | 26 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-pad-raster.R | 122 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-raster-to-points.R | 94 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-rcpp-get-coocurrence-matrix.R | 200 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-sample-lsm.R | 446 - landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-scale-sample.R | 200 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-scale-window.R | 172 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-show-cores.R | 120 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-show-correlation.R | 118 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-show-lsm.R | 108 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-show-patches.R | 82 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-spatialize-lsm.R | 170 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-unique-values.R | 26 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-unpad-raster.R | 120 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test-window-lsm.R | 96 landscapemetrics-1.5.6/landscapemetrics/tests/testthat/test_fragstats.R | 3884 +++++----- landscapemetrics-1.5.6/landscapemetrics/vignettes/get_started.Rmd | 360 510 files changed, 36319 insertions(+), 36343 deletions(-)
More information about landscapemetrics at CRAN
Permanent link
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality
restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Yves Rosseel [ctb],
Rebecca Kuiper [aut],
Aleksandra Dacko [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.3-500 dated 2022-06-06 and 0.4-500 dated 2023-03-23
restriktor-0.3-500/restriktor/tests |only restriktor-0.4-500/restriktor/DESCRIPTION | 13 restriktor-0.4-500/restriktor/MD5 | 50 restriktor-0.4-500/restriktor/NAMESPACE | 51 restriktor-0.4-500/restriktor/R/conLM.R | 8 restriktor-0.4-500/restriktor/R/con_augmented_information.R | 1 restriktor-0.4-500/restriktor/R/con_constraints.R | 30 restriktor-0.4-500/restriktor/R/con_goric.R | 1128 +++++++----- restriktor-0.4-500/restriktor/R/con_incomplete.R |only restriktor-0.4-500/restriktor/R/con_solver.R | 6 restriktor-0.4-500/restriktor/R/con_weights.R | 8 restriktor-0.4-500/restriktor/R/evSyn.R |only restriktor-0.4-500/restriktor/R/restriktor.R | 26 restriktor-0.4-500/restriktor/R/restriktor_print.R | 2 restriktor-0.4-500/restriktor/R/restriktor_print_summary.R | 2 restriktor-0.4-500/restriktor/R/utilities.R | 28 restriktor-0.4-500/restriktor/man/Burns.Rd | 2 restriktor-0.4-500/restriktor/man/ConTestScore.Rd | 2 restriktor-0.4-500/restriktor/man/ConTestWald.Rd | 2 restriktor-0.4-500/restriktor/man/bootstrapD.Rd | 2 restriktor-0.4-500/restriktor/man/conTestF.Rd | 2 restriktor-0.4-500/restriktor/man/conTest_ceq.Rd | 4 restriktor-0.4-500/restriktor/man/conTest_summary.Rd | 4 restriktor-0.4-500/restriktor/man/evSyn.Rd |only restriktor-0.4-500/restriktor/man/goric.Rd | 195 +- restriktor-0.4-500/restriktor/man/iht.Rd | 8 restriktor-0.4-500/restriktor/man/restriktor-package.rd | 16 restriktor-0.4-500/restriktor/man/restriktor.Rd | 21 28 files changed, 1053 insertions(+), 558 deletions(-)
Title: Embedding and Clustering with Alignment for Spatial Datasets
Description: An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.
Author: Wei Liu [aut, cre],
Yi Yang [aut],
Jin Liu [aut]
Maintainer: Wei Liu <wei.liu@duke-nus.edu.sg>
Diff between PRECAST versions 1.4 dated 2023-02-11 and 1.5 dated 2023-03-23
DESCRIPTION | 11 +- MD5 | 48 ++++----- NAMESPACE | 9 + R/SetClass.R | 148 ++++++++++++++++++++++------ R/Visualization.R | 74 +++++++++++++- R/main.R | 12 ++ README.md | 12 +- inst/doc/PRECAST.BreastCancer.R | 104 +++++++++++++------- inst/doc/PRECAST.BreastCancer.Rmd | 138 +++++++++++++++++++------- inst/doc/PRECAST.BreastCancer.html | 190 ++++++++++++++++++++++++------------- inst/doc/PRECAST.DLPFC.R | 18 ++- inst/doc/PRECAST.DLPFC.Rmd | 20 ++- inst/doc/PRECAST.DLPFC.html | 24 ++-- inst/doc/PRECAST.Simu.R | 69 ++++++++++--- inst/doc/PRECAST.Simu.Rmd | 99 +++++++++++++++---- inst/doc/PRECAST.Simu.html | 170 +++++++++++++++++++++------------ man/CreateiDRSCObject.Rd | 4 man/IntegrateSpaData.Rd | 11 +- man/SpaPlot.Rd | 4 man/chooseColors.Rd |only man/dimPlot.Rd | 3 man/drawFigs.Rd |only man/plot_scatter.Rd | 3 vignettes/PRECAST.BreastCancer.Rmd | 138 +++++++++++++++++++------- vignettes/PRECAST.DLPFC.Rmd | 20 ++- vignettes/PRECAST.Simu.Rmd | 99 +++++++++++++++---- 26 files changed, 1040 insertions(+), 388 deletions(-)
Title: Tools for HTML
Description: Tools for HTML generation and output.
Author: Joe Cheng [aut],
Carson Sievert [aut, cre] ,
Barret Schloerke [aut] ,
Winston Chang [aut] ,
Yihui Xie [aut],
Jeff Allen [aut],
RStudio [cph]
Maintainer: Carson Sievert <carson@rstudio.com>
Diff between htmltools versions 0.5.4 dated 2022-12-07 and 0.5.5 dated 2023-03-23
DESCRIPTION | 8 ++-- MD5 | 16 ++++---- NEWS.md | 8 ++++ R/selector.R | 48 +++++++++++++++++------- R/tag_query.R | 2 - R/tags.R | 6 +-- tests/testthat/_snaps/tags.md | 18 +++++++++ tests/testthat/test-selector.R | 81 ++++++++++++++++++++++++++++++++++++++++- tests/testthat/test-tags.r | 11 ++++- 9 files changed, 165 insertions(+), 33 deletions(-)
Title: Change-in-Estimate Approach to Assess Confounding Effects
Description: Applies the change-in-effect estimate method to assess confounding
effects in medical and epidemiological research (Greenland & Pearce (2016)
<doi:10.1146/annurev-publhealth-031914-122559> ). It starts with a crude model
including only the outcome and exposure variables. At each of the subsequent
steps, one variable which creates the largest change among the remaining variables
is selected. This process is repeated until all variables have been entered into
the model (Wang Z. Stata Journal 2007; 7, Number 2, pp. 183–196). Currently, the 'chest'
package has functions for linear regression, logistic regression, negative
binomial regression, Cox proportional hazards model and conditional logistic
regression.
Author: Zhiqiang Wang [aut, cre]
Maintainer: Zhiqiang Wang <menzies.uq@gmail.com>
Diff between chest versions 0.3.6 dated 2022-03-01 and 0.3.7 dated 2023-03-23
chest-0.3.6/chest/R/chest_speedglm.R |only chest-0.3.6/chest/man/chest_speedglm.Rd |only chest-0.3.6/chest/man/figures/README-chest_speedglm_1-1.png |only chest-0.3.6/chest/man/figures/README-speedglm_2-1.png |only chest-0.3.6/chest/man/figures/README-speedglm_3-1.png |only chest-0.3.7/chest/DESCRIPTION | 12 chest-0.3.7/chest/MD5 | 39 chest-0.3.7/chest/NAMESPACE | 2 chest-0.3.7/chest/NEWS.md | 3 chest-0.3.7/chest/R/chest.R | 107 +- chest-0.3.7/chest/R/chest_forest.R | 162 +-- chest-0.3.7/chest/R/chest_glm.R | 4 chest-0.3.7/chest/R/chest_plot.R | 238 ++--- chest-0.3.7/chest/README.md | 272 ++---- chest-0.3.7/chest/build/vignette.rds |binary chest-0.3.7/chest/inst/doc/chest-vignette.R | 56 - chest-0.3.7/chest/inst/doc/chest-vignette.Rmd | 257 ++---- chest-0.3.7/chest/inst/doc/chest-vignette.html | 494 +++++++----- chest-0.3.7/chest/man/chest.Rd | 4 chest-0.3.7/chest/man/chest_forest.Rd | 2 chest-0.3.7/chest/man/chest_glm.Rd | 4 chest-0.3.7/chest/man/chest_plot.Rd | 6 chest-0.3.7/chest/vignettes/chest-vignette.Rmd | 257 ++---- 23 files changed, 878 insertions(+), 1041 deletions(-)
Title: Isotope Calculations in R
Description: Perform common calculations based on published stable isotope theory, such as calculating carbon isotope discrimination and intrinsic water use efficiency from wood or leaf carbon isotope composition. See Mathias and Hudiburg (2022) in Global Change Biology <doi:10.1111/gcb.16407>.
Author: Justin Mathias
Maintainer: Justin Mathias <justin.m.mathias@gmail.com>
Diff between isocalcR versions 0.1.0 dated 2022-07-15 and 0.1.1 dated 2023-03-23
DESCRIPTION | 12 - MD5 | 18 - NEWS.md | 4 R/CO2data.R | 3 README.md | 93 ++++---- build/vignette.rds |binary data/CO2data.rda |binary inst/CITATION |only inst/doc/isocalcR-vignette.html | 455 ++++++++++++++++++++++++++++++---------- man/CO2data.Rd | 3 man/figures/logo.png |only 11 files changed, 420 insertions(+), 168 deletions(-)
Title: Simple and Flexible Tests of Sample Exchangeability
Description: Given a multivariate dataset and some knowledge about the dependencies
between its features, it is customary to fit a statistical model to the features
to infer parameters of interest. Such a procedure implicitly assumes that the
sample is exchangeable. This package provides a flexible non-parametric test
of this exchangeability assumption, allowing the user to specify the feature
dependencies by hand as long as features can be grouped into disjoint independent sets.
This package also allows users to test a dual hypothesis, which is, given that the
sample is exchangeable, does a proposed grouping of the features into disjoint sets
also produce statistically independent sets of features? See Aw, Spence and Song (2023)
for the accompanying paper.
Author: Alan Aw [cre, aut] ,
Jeffrey Spence [ctb]
Maintainer: Alan Aw <alanaw1@berkeley.edu>
Diff between flintyR versions 0.0.2 dated 2021-09-28 and 0.1.0 dated 2023-03-23
flintyR-0.0.2/flintyR/tests/testthat/test-flintyR.R |only flintyR-0.1.0/flintyR/DESCRIPTION | 43 ++++-- flintyR-0.1.0/flintyR/MD5 | 47 +++--- flintyR-0.1.0/flintyR/R/RcppExports.R | 12 - flintyR-0.1.0/flintyR/R/auxiliary.R | 69 +++++++--- flintyR-0.1.0/flintyR/R/getPValue.R | 89 ++++++++----- flintyR-0.1.0/flintyR/build/partial.rdb |binary flintyR-0.1.0/flintyR/man/blockLargeP.Rd | 2 flintyR-0.1.0/flintyR/man/blockPermute.Rd | 4 flintyR-0.1.0/flintyR/man/cacheBlockPermute1.Rd | 2 flintyR-0.1.0/flintyR/man/cacheBlockPermute2.Rd | 2 flintyR-0.1.0/flintyR/man/distDataPValue.Rd | 29 ++-- flintyR-0.1.0/flintyR/man/distDataPermute.Rd | 4 flintyR-0.1.0/flintyR/man/getBinVStat.Rd | 2 flintyR-0.1.0/flintyR/man/getBlockCov.Rd | 4 flintyR-0.1.0/flintyR/man/getCov.Rd | 2 flintyR-0.1.0/flintyR/man/getPValue.Rd | 20 +- flintyR-0.1.0/flintyR/man/getRealVStat.Rd | 2 flintyR-0.1.0/flintyR/man/hamming_bitwise.Rd | 6 flintyR-0.1.0/flintyR/man/lp_distance.Rd | 6 flintyR-0.1.0/flintyR/man/naiveBlockPermute1.Rd | 2 flintyR-0.1.0/flintyR/man/naiveBlockPermute2.Rd | 2 flintyR-0.1.0/flintyR/src/fast_dist_calc.cpp | 4 flintyR-0.1.0/flintyR/tests/testthat.R | 7 - flintyR-0.1.0/flintyR/tests/testthat/test_flintyR.R |only flintyR-0.1.0/flintyR/tests/testthat/testthat-problems.rds |only 26 files changed, 227 insertions(+), 133 deletions(-)
Title: Bayesian Fertility Projection
Description: Making probabilistic projections of total fertility rate for all countries of the world, using a Bayesian hierarchical model <doi:10.1007/s13524-011-0040-5> <doi:10.18637/jss.v106.i08>. Subnational probabilistic projections are also supported <doi:10.4054/DemRes.2018.38.60>.
Author: Hana Sevcikova , Leontine Alkema , Peiran Liu , Adrian Raftery , Bailey Fosdick , Patrick Gerland
Maintainer: Hana Sevcikova <hanas@uw.edu>
Diff between bayesTFR versions 7.3-0 dated 2023-02-03 and 7.3-2 dated 2023-03-23
ChangeLog | 6 ++++++ DESCRIPTION | 10 +++++----- MD5 | 26 +++++++++++++------------- R/mcmc_ini.R | 5 +++-- R/run_mcmc.R | 5 +++-- R/wpp_data.R | 6 +++--- build/partial.rdb |binary inst/CITATION | 24 +++++++++++++++++------- man/bayesTFR-internal.Rd | 2 ++ man/bayesTFR-package.Rd | 4 ++++ man/predict-tfr.Rd | 2 ++ man/run-mcmc.Rd | 2 ++ man/run.tfr.mcmc.extra.Rd | 4 +++- man/tfr.predict.subnat.Rd | 2 +- 14 files changed, 64 insertions(+), 34 deletions(-)
Title: TERN AusPlots Analysis Package
Description: Extraction, preparation, visualisation and analysis of TERN AusPlots ecosystem monitoring data. Direct access to plot-based data on vegetation and soils across Australia, including physical sample barcode numbers. Simple function calls extract the data and merge them into species occurrence matrices for downstream analysis, or calculate things like basal area and fractional cover. TERN AusPlots is a national field plot-based ecosystem surveillance monitoring method and dataset for Australia. The data have been collected across a national network of plots and transects by the Terrestrial Ecosystem Research Network (TERN - <https://www.tern.org.au>), an Australian Government NCRIS-enabled project, and its Ecosystem Surveillance platform (<https://www.tern.org.au/tern-land-observatory/ecosystem-surveillance-and-environmental-monitoring/>).
Author: Greg Guerin [aut, cre],
Tom Saleeba [aut],
Samantha Munroe [aut],
Bernardo Blanco-Martin [aut],
Irene Martin-Fores [aut],
Andrew Tokmakoff [aut]
Maintainer: Greg Guerin <ggueri01@gmail.com>
Diff between ausplotsR versions 1.2.7 dated 2021-11-23 and 1.2.8 dated 2023-03-23
DESCRIPTION | 10 MD5 | 72 +- NAMESPACE | 50 - R/ausplots_queries.r | 434 ++++++------- R/ausplots_visual.R | 226 +++---- R/basal_area.R | 230 +++---- R/cumulative_cover.R | 112 +-- R/fraction_pie.R | 8 R/fractional_cover.R | 330 +++++----- R/get_ausplots.R | 530 ++++++++--------- R/growth_form_table.R | 566 +++++++++--------- R/growthform_pie.R | 16 R/ma_ausplot_ma.R | 88 +- R/map_attribute.R | 56 - R/map_ausplots.R | 68 +- R/set_auth.R | 28 R/single_cover_value.R | 142 ++-- R/species_list.R | 208 +++--- R/species_optimisation.R | 476 +++++++-------- R/species_table.R | 636 ++++++++++---------- R/whitt.plot.R | 6 build/vignette.rds |binary inst/doc/start_guide.R | 226 +++---- inst/doc/start_guide.Rmd | 456 +++++++------- inst/doc/start_guide.html | 1429 +++++++++++++++++++++++++--------------------- man/ausplotsR-package.Rd | 230 +++---- man/ausplots_visual.Rd | 160 ++--- man/basal_area.Rd | 90 +- man/fractional_cover.Rd | 110 +-- man/get_ausplots.Rd | 212 +++--- man/growth_form_table.Rd | 152 ++-- man/optim_species.Rd | 258 ++++---- man/plot_opt.Rd | 112 +-- man/single_cover_value.Rd | 124 +-- man/species_list.Rd | 124 +-- man/species_table.Rd | 144 ++-- vignettes/start_guide.Rmd | 456 +++++++------- 37 files changed, 4371 insertions(+), 4204 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-09 0.1.0
Title: Easily Save Output and Trace it Back to Code
Description: Write output (plots and tables) ensuring traceability back to code. Includes a graphics saver with simple automation of stamping with source, destination and creation time. A list of plots can be saved at once. A user-friendly selection of output dimensions for presentations, on-screen inspections, and more available.
Author: Philip Delff [aut, cre]
Maintainer: Philip Delff <philip@delff.dk>
Diff between tracee versions 0.0.2 dated 2022-10-15 and 0.0.3 dated 2023-03-23
tracee-0.0.2/tracee/R/fnAppend.R |only tracee-0.0.2/tracee/R/fnExtensionTracee.R |only tracee-0.0.2/tracee/man/fnAppend.Rd |only tracee-0.0.2/tracee/man/fnExtensionTracee.Rd |only tracee-0.0.2/tracee/man/writeFlextab.Rd |only tracee-0.0.2/tracee/tests/testthat/test_writeFlextab.R |only tracee-0.0.3/tracee/DESCRIPTION | 15 tracee-0.0.3/tracee/MD5 | 74 ++-- tracee-0.0.3/tracee/NAMESPACE | 6 tracee-0.0.3/tracee/NEWS.md | 19 + tracee-0.0.3/tracee/R/canvasSize.R | 82 +++- tracee-0.0.3/tracee/R/createStamp.R | 3 tracee-0.0.3/tracee/R/ftstamp.R |only tracee-0.0.3/tracee/R/ftwrite.R |only tracee-0.0.3/tracee/R/ggstamp.R | 11 tracee-0.0.3/tracee/R/ggwrite.R | 120 +++++- tracee-0.0.3/tracee/R/stampFlextab.R | 24 - tracee-0.0.3/tracee/R/writeFlextab.R | 44 -- tracee-0.0.3/tracee/README.md |only tracee-0.0.3/tracee/man/canvasSize.Rd | 27 - tracee-0.0.3/tracee/man/ftstamp.Rd |only tracee-0.0.3/tracee/man/ftwrite.Rd |only tracee-0.0.3/tracee/man/ggstamp.Rd | 4 tracee-0.0.3/tracee/man/ggwrite.Rd | 20 - tracee-0.0.3/tracee/tests/testthat/_snaps |only tracee-0.0.3/tracee/tests/testthat/testOutput/flextab1.png |binary tracee-0.0.3/tracee/tests/testthat/testOutput/flextab2.docx |binary tracee-0.0.3/tracee/tests/testthat/testOutput/flextab2.html | 173 ++++++++-- tracee-0.0.3/tracee/tests/testthat/testOutput/flextab2.png |binary tracee-0.0.3/tracee/tests/testthat/testOutput/flextab2.pptx |binary tracee-0.0.3/tracee/tests/testthat/testOutput/flextab3.png |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite1.docx |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite1.html |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite1.png |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite1.pptx |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite2.docx |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite2.html |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite2.png |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite2.pptx |only tracee-0.0.3/tracee/tests/testthat/testOutput/ftwrite3.png |only tracee-0.0.3/tracee/tests/testthat/testOutput/myplot1.png |only tracee-0.0.3/tracee/tests/testthat/testReference/canvasSize1.rds |binary tracee-0.0.3/tracee/tests/testthat/testReference/createStamp01.rds |only tracee-0.0.3/tracee/tests/testthat/testReference/ggstamp1.rds |binary tracee-0.0.3/tracee/tests/testthat/testReference/ggstamp2.rds |binary tracee-0.0.3/tracee/tests/testthat/test_canvasSize.R | 2 tracee-0.0.3/tracee/tests/testthat/test_createStamp.R |only tracee-0.0.3/tracee/tests/testthat/test_ftwrite.R |only tracee-0.0.3/tracee/tests/testthat/test_ggstamp.R | 35 +- tracee-0.0.3/tracee/tests/testthat/test_ggwrite.R | 36 +- 50 files changed, 466 insertions(+), 229 deletions(-)
Title: Neat Data for Presentation
Description: Utilities for unambiguous, neat and legible
representation of data (date, time stamp, numbers, percentages and strings)
for presentation of analysis , aiming for elegance and consistency.
The purpose of this package is to format data, that is better
for presentation and any automation jobs that reports numbers.
Author: Shivaprakash Suresh [aut, cre, cph]
Maintainer: Shivaprakash Suresh <dswithai@gmail.com>
Diff between neatR versions 0.1.1 dated 2023-01-30 and 0.2.0 dated 2023-03-23
DESCRIPTION | 9 MD5 | 21 +- R/src.R | 477 ++++++++++++++++++++++++++++++++++++++++++------- build |only inst |only man/ndate.Rd | 17 + man/nnumber.Rd | 28 ++ man/npercent.Rd | 12 - man/nstring.Rd | 29 ++ man/ntimestamp.Rd | 24 +- tests/testthat/tests.R | 46 +++- vignettes |only 12 files changed, 549 insertions(+), 114 deletions(-)