Mon, 27 Mar 2023

Package robumeta updated to version 2.1 with previous version 2.0 dated 2017-05-29

Title: Robust Variance Meta-Regression
Description: Functions for conducting robust variance estimation (RVE) meta-regression using both large and small sample RVE estimators under various weighting schemes. These methods are distribution free and provide valid point estimates, standard errors and hypothesis tests even when the degree and structure of dependence between effect sizes is unknown. Also included are functions for conducting sensitivity analyses under correlated effects weighting and producing RVE-based forest plots.
Author: Zachary Fisher [aut, cre], Elizabeth Tipton [aut], Hou Zhipeng [aut]
Maintainer: Zachary Fisher <fish.zachary@gmail.com>

Diff between robumeta versions 2.0 dated 2017-05-29 and 2.1 dated 2023-03-27

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Package r2mlm updated to version 0.3.3 with previous version 0.3.2 dated 2022-07-06

Title: R-Squared Measures for Multilevel Models
Description: Generates both total- and level-specific R-squared measures from Rights and Sterba’s (2019) <doi:10.1037/met0000184> framework of R-squared measures for multilevel models with random intercepts and/or slopes, which is based on a complete decomposition of variance. Additionally generates graphical representations of these R-squared measures to allow visualizing and interpreting all measures in the framework together as an integrated set. This framework subsumes 10 previously-developed R-squared measures for multilevel models as special cases of 5 measures from the framework, and it also includes several newly-developed measures. Measures in the framework can be used to compute R-squared differences when comparing multilevel models (following procedures in Rights & Sterba (2020) <doi:10.1080/00273171.2019.1660605>).
Author: Mairead Shaw [aut, cre], Jason Rights [aut], Sonya Sterba [aut], Jessica Flake [aut]
Maintainer: Mairead Shaw <mairead.shaw@mail.mcgill.ca>

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Package metevalue updated to version 0.1.14 with previous version 0.1.13 dated 2022-11-21

Title: E-Value in the Omics Data Association Studies
Description: In the omics data association studies, it is common to conduct the p-value corrections to control the false significance. Among those p-value correction methods, E-value is recently studied based on V. Vovk and R. Wang (2021) <doi:10.1214/20-AOS2020>. This package provides e-value calculation for several types of omics data association studies. Currently, four data formats are supported: BiSeq, MDRfinder, methylKit and metilene data. The relevant references are listed below: Katja Hebestreit and Hans-Ulrich Klein (2022) <doi:10.18129/B9.bioc.BiSeq>; Altuna Akalin et.al (2012) <doi:10.18129/B9.bioc.methylKit>.
Author: Yifan Yang [aut, cre, cph], Xiaoqing Pan [aut], Haoyuan Liu [aut]
Maintainer: Yifan Yang <yfyang.86@hotmail.com>

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Package gam updated to version 1.22-2 with previous version 1.22-1 dated 2023-01-28

Title: Generalized Additive Models
Description: Functions for fitting and working with generalized additive models, as described in chapter 7 of "Statistical Models in S" (Chambers and Hastie (eds), 1991), and "Generalized Additive Models" (Hastie and Tibshirani, 1990).
Author: Trevor Hastie
Maintainer: Trevor Hastie <hastie@stanford.edu>

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Package QBMS updated to version 0.9.0 with previous version 0.8.0 dated 2022-05-19

Title: Query the Breeding Management System(s)
Description: Linking data management systems to analytics is an important step in breeding digitization. Breeders can use this R package to Query the Breeding Management System(s) like 'BMS' <https://bmspro.io>, 'BreedBase' <https://breedbase.org>, and 'GIGWA' <https://southgreen.fr/content/gigwa> (using 'BrAPI' <https://brapi.org> calls) and help them to retrieve phenotypic and genotypic data directly into their analyzing pipelines.
Author: Khaled Al-Shamaa [aut, cre], Mariano Omar Crimi [ctb], Zakaria Kehel [ctb], Johan Aparicio [ctb], ICARDA [cph]
Maintainer: Khaled Al-Shamaa <k.el-shamaa@cgiar.org>

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Package lefko3 updated to version 6.0.0 with previous version 5.5.0 dated 2022-09-13

Title: Historical and Ahistorical Population Projection Matrix Analysis
Description: Complete analytical environment for the construction and analysis of matrix population models and integral projection models. Includes the ability to construct historical matrices, which are 2d matrices comprising 3 consecutive times of demographic information. Estimates both raw and function-based forms of historical and standard ahistorical matrices. It also estimates function-based age-by-stage matrices and raw and function-based Leslie matrices.
Author: Richard P. Shefferson [aut, cre] , Johan Ehrlen [aut]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>

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Package did2s updated to version 1.0.1 with previous version 1.0.0 dated 2023-03-11

Title: Two-Stage Difference-in-Differences Following Gardner (2021)
Description: Estimates Two-way Fixed Effects difference-in-differences/event-study models using the approach proposed by Gardner (2021). To avoid the problems caused by OLS estimation of the Two-way Fixed Effects model, this function first estimates the fixed effects and covariates using untreated observations and then in a second stage, estimates the treatment effects.
Author: Kyle Butts [aut, cre] , John Gardner [aut] , Grant McDermott [ctb] , Laurent Berge [ctb]
Maintainer: Kyle Butts <kyle.butts@colorado.edu>

Diff between did2s versions 1.0.0 dated 2023-03-11 and 1.0.1 dated 2023-03-27

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Package DSSAT updated to version 0.0.7 with previous version 0.0.6 dated 2022-01-19

Title: A Comprehensive R Interface for the DSSAT Cropping Systems Model
Description: The purpose of this package is to provide a comprehensive R interface to the Decision Support System for Agrotechnology Transfer Cropping Systems Model (DSSAT-CSM; see <https://dssat.net> for more information). The package provides cross-platform functions to read and write input files, run DSSAT-CSM, and read output files.
Author: Phillip D. Alderman [aut, cre]
Maintainer: Phillip D. Alderman <phillip.alderman@okstate.edu>

Diff between DSSAT versions 0.0.6 dated 2022-01-19 and 0.0.7 dated 2023-03-27

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New package IDEATools with initial version 3.4.1
Package: IDEATools
Title: Individual and Group Farm Sustainability Assessments using the IDEA4 Method
Version: 3.4.1
Description: Collection of tools to automate the processing of data collected though the IDEA4 method (see Zahm et al. (2018) <doi:10.1051/cagri/2019004> ). Starting from the original data collecting files this packages provides functions to compute IDEA indicators, draw modern and aesthetic plots, and produce a wide range of reporting materials.
Encoding: UTF-8
URL: https://davidcarayon.github.io/IDEATools/index.html, https://github.com/davidcarayon/IDEATools
BugReports: https://github.com/davidcarayon/IDEATools/issues
Imports: data.table, jsonlite, readxl, tibble, stringi, ggimage, pdftools, ggpubr, ggplot2, rlang, ggtext, rmarkdown, shiny, openxlsx
License: GPL-3
Depends: R (>= 4.1.0)
VignetteBuilder: knitr
Suggests: covr, knitr
NeedsCompilation: no
Packaged: 2023-03-27 13:15:12 UTC; davidcarayon
Author: David Carayon [aut, cre, cph]
Maintainer: David Carayon <david.carayon@inrae.fr>
Repository: CRAN
Date/Publication: 2023-03-27 19:10:02 UTC

More information about IDEATools at CRAN
Permanent link

Package loadeR updated to version 1.1.6 with previous version 1.1.3 dated 2023-01-24

Title: Load Data for Analysis System
Description: Provides a framework to load text and excel files through a 'shiny' graphical interface. It allows renaming, transforming, ordering and removing variables. It includes basic exploratory methods such as the mean, median, mode, normality test, histogram and correlation.
Author: Oldemar Rodriguez [aut, cre], Diego Jimenez [aut], Joseline Quiros [aut]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>

Diff between loadeR versions 1.1.3 dated 2023-01-24 and 1.1.6 dated 2023-03-27

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Package jomo updated to version 2.7-5 with previous version 2.7-4 dated 2022-09-17

Title: Multilevel Joint Modelling Multiple Imputation
Description: Similarly to package 'pan', 'jomo' is a package for multilevel joint modelling multiple imputation (Carpenter and Kenward, 2013) <doi:10.1002/9781119942283>. Novel aspects of 'jomo' are the possibility of handling binary and categorical data through latent normal variables, the option to use cluster-specific covariance matrices and to impute compatibly with the substantive model.
Author: Matteo Quartagno, James Carpenter
Maintainer: Matteo Quartagno <m.quartagno@ucl.ac.uk>

Diff between jomo versions 2.7-4 dated 2022-09-17 and 2.7-5 dated 2023-03-27

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Package guiplot updated to version 0.4.0 with previous version 0.3.1 dated 2022-12-07

Title: User-Friendly GUI Plotting Tools
Description: Create a user-friendly plotting GUI for 'R'. In addition, one purpose of creating the 'R' package is to facilitate third-party software to call 'R' for drawing, for example, 'Phoenix WinNonlin' software calls 'R' to draw the drug concentration versus time curve.
Author: Fu Yongchao [aut, cre, cph]
Maintainer: Fu Yongchao <3212418315@qq.com>

Diff between guiplot versions 0.3.1 dated 2022-12-07 and 0.4.0 dated 2023-03-27

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Package queryup updated to version 1.0.3 with previous version 1.0.2 dated 2023-02-10

Title: Query the 'UniProtKB' REST API
Description: Retrieve protein information from the 'UniProtKB' REST API (see <https://www.uniprot.org/help/api_queries>).
Author: Guillaume Voisinne [aut, cre]
Maintainer: Guillaume Voisinne <voisinne@gmail.com>

Diff between queryup versions 1.0.2 dated 2023-02-10 and 1.0.3 dated 2023-03-27

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Package AlphaSimR updated to version 1.4.2 with previous version 1.3.4 dated 2022-12-09

Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>]. Used for stochastic simulations of breeding programs to the level of DNA sequence for every individual. Contained is a wide range of functions for modeling common tasks in a breeding program, such as selection and crossing. These functions allow for constructing simulations of highly complex plant and animal breeding programs via scripting in the R software environment. Such simulations can be used to evaluate overall breeding program performance and conduct research into breeding program design, such as implementation of genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS') for fast simulation of biallelic sequences according to a population demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] , Gregor Gorjanc [ctb] , John Hickey [ctb] , Daniel Money [ctb] , David Wilson [ctb], Thiago Oliveira [ctb] , Audrey Martin [ctb]
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>

Diff between AlphaSimR versions 1.3.4 dated 2022-12-09 and 1.4.2 dated 2023-03-27

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Package sknifedatar (with last version 0.1.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-06-01 0.1.2
2021-05-20 0.1.1

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Package modeltime (with last version 1.2.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-02-07 1.2.5
2022-11-16 1.2.4
2022-10-18 1.2.3
2022-06-07 1.2.2
2022-06-01 1.2.1
2022-04-07 1.2.0
2022-01-12 1.1.1
2021-10-18 1.1.0
2021-09-14 1.0.0
2021-07-16 0.7.0
2021-06-13 0.6.1
2021-05-30 0.6.0
2021-04-03 0.5.1
2021-03-29 0.5.0
2021-03-19 0.4.2
2021-01-17 0.4.1
2020-11-23 0.4.0
2020-11-09 0.3.1
2020-10-28 0.3.0
2020-10-08 0.2.1
2020-09-28 0.2.0
2020-09-02 0.1.0
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Package rfars (with last version 0.2.0) was removed from CRAN

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2022-11-01 0.2.0

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Package timetk (with last version 2.8.2) was removed from CRAN

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2022-11-17 2.8.2
2022-05-31 2.8.1
2022-04-07 2.8.0
2022-01-19 2.7.0
2021-11-16 2.6.2
2021-01-18 2.6.1
2020-11-21 2.6.0
2020-10-22 2.5.0
2020-10-08 2.4.0
2020-09-29 2.3.0
2020-09-01 2.2.1
2020-07-18 2.2.0
2020-07-03 2.1.0
2020-05-31 2.0.0
2020-04-19 1.0.0
2020-03-18 0.1.3
2019-09-25 0.1.2
2018-08-19 0.1.1.1
2018-05-14 0.1.1
2017-07-25 0.1.0

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Package modeltime.ensemble (with last version 1.0.2) was removed from CRAN

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2022-10-18 1.0.2
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2021-10-19 1.0.0
2021-07-16 0.4.2
2021-05-31 0.4.1
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Package modeltime.h2o (with last version 0.1.1) was removed from CRAN

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2021-04-05 0.1.1

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Package tidyquant (with last version 1.0.6) was removed from CRAN

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2022-11-16 1.0.6
2022-09-08 1.0.5
2022-05-20 1.0.4
2021-03-05 1.0.3
2020-10-21 1.0.2
2020-07-02 1.0.1
2020-03-04 1.0.0
2020-01-27 0.5.10
2019-12-15 0.5.9
2019-10-11 0.5.8
2019-09-20 0.5.7
2019-04-22 0.5.6
2018-05-09 0.5.5
2018-02-19 0.5.4
2017-08-03 0.5.3
2017-07-27 0.5.2
2017-04-24 0.5.1
2017-04-03 0.5.0
2017-03-03 0.4.0
2017-01-21 0.3.0
2017-01-08 0.2.0
2016-12-31 0.1.0

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Package modeltime.resample (with last version 0.2.2) was removed from CRAN

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2023-01-28 0.2.7
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2022-11-10 0.2.4
2022-10-03 0.2.3
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2021-08-23 0.1.3
2021-06-25 0.1.2
2021-02-09 0.1.1
2021-01-22 0.1.0

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Package healthyR (with last version 0.2.0) was removed from CRAN

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2022-07-18 0.2.0
2022-04-25 0.1.9
2022-02-27 0.1.8
2022-01-05 0.1.7
2021-08-20 0.1.6
2021-06-22 0.1.5
2021-06-13 0.1.4
2021-06-03 0.1.3
2021-02-23 0.1.2
2020-12-04 0.1.1
2020-12-03 0.1.0

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Package alphavantager (with last version 0.1.2) was removed from CRAN

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2020-03-01 0.1.2
2019-03-11 0.1.1
2017-09-03 0.1.0

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Package FFdownload (with last version 1.1.0) was removed from CRAN

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2022-10-31 1.1.0
2021-05-27 1.0.6
2020-10-29 1.0.5

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Package RTL (with last version 1.3.2) was removed from CRAN

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2023-01-08 1.3.2
2022-11-15 1.3.1
2022-11-07 1.3.0
2022-06-17 1.2.0
2022-05-18 1.1.0
2022-02-11 1.0.0
2022-01-07 0.1.91
2022-01-04 0.1.9
2021-09-21 0.1.8
2021-06-12 0.1.7
2021-04-07 0.1.6
2020-11-11 0.1.5
2020-09-04 0.1.4
2020-06-07 0.1.3
2020-02-23 0.1.1

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Package healthyverse (with last version 1.0.3) was removed from CRAN

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2023-02-21 1.0.3
2022-01-21 1.0.2
2021-08-23 1.0.1
2021-02-17 1.0.0

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Package EventStudy (with last version 0.39.1) was removed from CRAN

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2023-03-23 0.39.1
2022-09-20 0.39
2021-12-19 0.37
2019-03-14 0.36
2019-03-02 0.35
2017-09-27 0.34
2017-09-07 0.33
2017-08-02 0.32
2017-06-07 0.31
2017-05-20 0.30

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Package healthyR.ai (with last version 0.0.12) was removed from CRAN

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2023-02-01 0.0.12
2023-01-12 0.0.11
2022-11-16 0.0.10
2022-10-04 0.0.9
2022-07-04 0.0.8
2022-04-29 0.0.7
2022-02-27 0.0.6
2022-01-07 0.0.5
2021-12-08 0.0.4
2021-11-23 0.0.3
2021-09-02 0.0.2
2021-08-20 0.0.1

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Package finnts (with last version 0.2.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-03-23 0.2.3
2023-02-11 0.2.2
2022-11-15 0.2.1
2022-07-14 0.2.0
2022-03-28 0.1.1
2022-02-07 0.1.0

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Package activatr (with last version 0.1.0) was removed from CRAN

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2021-01-15 0.1.0

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Package PortalHacienda (with last version 0.1.6) was removed from CRAN

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2020-11-19 0.1.6

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Package avfintools (with last version 0.1.0) was removed from CRAN

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2022-10-06 0.1.0

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Package MainExistingDatasets updated to version 1.0.2 with previous version 1.0.1 dated 2022-06-27

Title: Main Existing Human Datasets
Description: Shiny for Open Science to visualize, share, and inventory the main existing human datasets for researchers.
Author: Etienne Camenen [aut, cre], Baptiste Couvy-Duchesne [aut]
Maintainer: Etienne Camenen <etienne.camenen@gmail.com>

Diff between MainExistingDatasets versions 1.0.1 dated 2022-06-27 and 1.0.2 dated 2023-03-27

 DESCRIPTION                      |   11 +
 MD5                              |   12 +-
 NAMESPACE                        |    2 
 R/MainExistingDatasets-package.R |    3 
 build/vignette.rds               |binary
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 7 files changed, 229 insertions(+), 28 deletions(-)

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Package gdtools updated to version 0.3.3 with previous version 0.3.2 dated 2023-03-13

Title: Utilities for Graphical Rendering and Fonts Management
Description: Tools are provided to compute metrics of formatted strings and to check the availability of a font. Another set of functions is provided to support the collection of fonts from 'Google Fonts' in a cache. Their use is simple within 'R Markdown' documents and 'shiny' applications but also with graphic productions generated with the 'ggiraph', 'ragg' and 'svglite' packages or with tabular productions from the 'flextable' package.
Author: David Gohel [aut, cre], Hadley Wickham [aut], Lionel Henry [aut], Jeroen Ooms [aut] , Yixuan Qiu [ctb], R Core Team [cph] , ArData [cph], RStudio [cph]
Maintainer: David Gohel <david.gohel@ardata.fr>

Diff between gdtools versions 0.3.2 dated 2023-03-13 and 0.3.3 dated 2023-03-27

 DESCRIPTION      |   12 ++++++------
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 NAMESPACE        |    1 -
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 6 files changed, 21 insertions(+), 13 deletions(-)

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New package xtranat with initial version 0.1.0
Package: xtranat
Title: Network Metrics Based on Random Walks
Version: 0.1.0
Description: There are two new network metrics, RWC (random walk centrality) and CBET (counting betweenness). Also available are the normalized versions of those metrics. These measures of centrality and betweenness are particularly useful for the analysis of very dense weighted networks which include loops. Traditional measures do not work as well for those network characteristics. The main reference is DePaolis at al (2022) <doi:10.1007/s41109-022-00519-2>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Suggests: knitr, rmarkdown, igraph, kableExtra, testthat (>= 3.0.0)
VignetteBuilder: knitr
Depends: R (>= 2.10)
URL: https://github.com/fdepaolis/xtranat
BugReports: https://github.com/fdepaolis/xtranat/issues
NeedsCompilation: no
Packaged: 2023-03-23 14:57:30 UTC; fernandodepaolis
Author: Fernando DePaolis [aut, cre]
Maintainer: Fernando DePaolis <fdepaolis@middlebury.edu>
Repository: CRAN
Date/Publication: 2023-03-27 12:30:02 UTC

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New package textab with initial version 1.0
Package: textab
Title: Create Highly-Customized 'LaTeX' Tables
Version: 1.0
Description: Generate 'LaTeX' tables directly from R. It builds 'LaTeX' tables in blocks in the spirit of 'ggplot2' using the + and - operators for concatenation in the vertical and horizontal dimensions, respectively. It exports tables in the 'LaTeX' tabular environment using '.tex' code. It can compile '.tex' code to 'PDF' automatically.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
URL: https://setzler.github.io/textab/
BugReports: https://github.com/setzler/textab/issues
NeedsCompilation: no
Packaged: 2023-03-26 23:16:21 UTC; bradleysetzler
Author: Thibaut Lamadon [aut, cph], Bradley Setzler [aut, cre, cph]
Maintainer: Bradley Setzler <bradley.setzler@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-27 12:30:05 UTC

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New package SherlockHolmes with initial version 1.0
Package: SherlockHolmes
Version: 1.0
Date: 2023-03-19
Title: Building a Concordance of Terms in a Series of Texts
Maintainer: Barry Zeeberg <barryz2013@gmail.com>
Author: Barry Zeeberg [aut, cre]
Depends: R (>= 4.2.0)
LazyData: true
Imports: qpdf, stringr, dpseg, tableHTML, plotrix, zoo, stargazer, utils, graphics, grDevices, stats, textBoxPlacement, plot.matrix, devtools
Description: Compute the frequency distribution of a search term in a series of texts. For example, Arthur Conan Doyle wrote a total of 60 Sherlock Holmes stories, comprised of 54 short stories and 4 longer novels. I wanted to test my own subjective impression that, in many of the stories, Sherlock Holmes' popularity was used as bait to induce the reader to read a story that is essentially not primarily a Sherlock Holmes story. I used the term "Holmes" as a search pattern, since Watson would frequently address him by name, or use his name to describe something that he was doing. My hypothesis is that the frequency distribution of the search pattern "Holmes" is a good proxy for the degree to which a story is or is not truly a Sherlock Holmes story. The results are presented in a manuscript that is available as a vignette and online at <https://github.com/barryzee/Concordance>.
License: GPL (>= 2)
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-03-26 13:00:54 UTC; barryzeeberg
Repository: CRAN
Date/Publication: 2023-03-27 12:20:03 UTC

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New package IncidencePrevalence with initial version 0.2.0
Package: IncidencePrevalence
Title: Estimate Incidence and Prevalence using the OMOP Common Data Model
Version: 0.2.0
Description: Calculate incidence and prevalence using data mapped to the Observational Medical Outcomes Partnership (OMOP) common data model. Incidence and prevalence can be estimated for the total population in a database or for a stratification cohort.
Encoding: UTF-8
Depends: R (>= 4.0)
Imports: CDMConnector (>= 0.5.0), checkmate (>= 2.0.0), cli (>= 3.0.0), DBI (>= 1.0.0), dbplyr (>= 2.0.0), dplyr (>= 1.1.0), glue (>= 1.5.0), lubridate (>= 1.0.0), magrittr (>= 2.0.0), purrr (>= 0.3.5), rlang (>= 1.0.0), stringr (>= 1.5.0), tidyr (>= 1.2.0), tidyselect (>= 1.2.0), zip (>= 2.2.0)
Suggests: knitr, rmarkdown, RPostgres, tibble, ggplot2, scales, duckdb, odbc, here, Hmisc, epitools, tictoc, testthat (>= 0.3.1), spelling
VignetteBuilder: knitr
Language: en-US
License: Apache License (>= 2)
URL: https://darwin-eu.github.io/IncidencePrevalence/
NeedsCompilation: no
Packaged: 2023-03-26 20:08:29 UTC; eburn
Author: Edward Burn [aut, cre] , Berta Raventos [aut] , Marti Catala [aut] , Mike Du [ctb] , Yuchen Guo [ctb] , Adam Black [ctb] , Ger Inberg [ctb] , Kim Lopez [ctb]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Repository: CRAN
Date/Publication: 2023-03-27 12:20:06 UTC

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Package crch updated to version 1.1-2 with previous version 1.1-1 dated 2022-09-09

Title: Censored Regression with Conditional Heteroscedasticity
Description: Different approaches to censored or truncated regression with conditional heteroscedasticity are provided. First, continuous distributions can be used for the (right and/or left censored or truncated) response with separate linear predictors for the mean and variance. Second, cumulative link models for ordinal data (obtained by interval-censoring continuous data) can be employed for heteroscedastic extended logistic regression (HXLR). In the latter type of models, the intercepts depend on the thresholds that define the intervals. Infrastructure for working with censored or truncated normal, logistic, and Student-t distributions, i.e., d/p/q/r functions and distributions3 objects.
Author: Jakob Messner [aut, cre] , Achim Zeileis [aut] , Reto Stauffer [aut]
Maintainer: Jakob Messner <jakob.messner@posteo.net>

Diff between crch versions 1.1-1 dated 2022-09-09 and 1.1-2 dated 2023-03-27

 DESCRIPTION        |    8 +--
 MD5                |   14 +++---
 NEWS.md            |    5 ++
 R/crch.R           |    8 +--
 build/partial.rdb  |binary
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 8 files changed, 60 insertions(+), 95 deletions(-)

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New package cequre with initial version 1.3
Package: cequre
Version: 1.3
Date: 2023-03-24
Title: Censored Quantile Regression & Monotonicity-Respecting Restoring
Author: Yijian Huang <yhuang5@emory.edu>
Maintainer: Yijian Huang <yhuang5@emory.edu>
Depends: R (>= 2.8.0)
Description: Perform censored quantile regression of Huang (2010) <doi:10.1214/09-AOS771>, and restore monotonicity respecting via adaptive interpolation for dynamic regression of Huang (2017) <doi:10.1080/01621459.2016.1149070>. The monotonicity-respecting restoration applies to general dynamic regression models including (uncensored or censored) quantile regression model, additive hazards model, and dynamic survival models of Peng and Huang (2007) <doi:10.1093/biomet/asm058>, among others.
License: GPL (>= 2)
NeedsCompilation: yes
Packaged: 2023-03-26 20:25:00 UTC; eugene
Repository: CRAN
Date/Publication: 2023-03-27 12:30:08 UTC

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New package AcademicThemes with initial version 0.0.1
Package: AcademicThemes
Title: Colour Plots with Palettes from Academic Institutions
Version: 0.0.1
Description: Functionality to allow users to easily colour plots with the colour palettes of various academic institutions.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/hwarden162/AcademicThemes
BugReports: https://github.com/hwarden162/AcademicThemes/issues
Suggests: covr, knitr, rmarkdown, scales, testthat (>= 3.0.0), tidyverse
Imports: ggplot2, grDevices
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2023-03-27 09:05:44 UTC; hwarden
Author: Hugh Warden [aut, cre]
Maintainer: Hugh Warden <hugh.warden@outlook.com>
Repository: CRAN
Date/Publication: 2023-03-27 12:40:02 UTC

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Package RCurl updated to version 1.98-1.12 with previous version 1.98-1.10 dated 2023-01-27

Title: General Network (HTTP/FTP/...) Client Interface for R
Description: A wrapper for 'libcurl' <https://curl.se/libcurl/> Provides functions to allow one to compose general HTTP requests and provides convenient functions to fetch URIs, get & post forms, etc. and process the results returned by the Web server. This provides a great deal of control over the HTTP/FTP/... connection and the form of the request while providing a higher-level interface than is available just using R socket connections. Additionally, the underlying implementation is robust and extensive, supporting FTP/FTPS/TFTP (uploads and downloads), SSL/HTTPS, telnet, dict, ldap, and also supports cookies, redirects, authentication, etc.
Author: CRAN Team [ctb, cre] , Duncan Temple Lang [aut]
Maintainer: CRAN Team <CRAN@r-project.org>

Diff between RCurl versions 1.98-1.10 dated 2023-01-27 and 1.98-1.12 dated 2023-03-27

 DESCRIPTION       |    6 +++---
 MD5               |    6 +++---
 R/curl.S          |    2 +-
 src/Makevars.ucrt |    2 +-
 4 files changed, 8 insertions(+), 8 deletions(-)

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Package OCNet updated to version 1.0.0 with previous version 0.7.1 dated 2023-03-07

Title: Optimal Channel Networks
Description: Generate and analyze Optimal Channel Networks (OCNs): oriented spanning trees reproducing all scaling features characteristic of real, natural river networks. As such, they can be used in a variety of numerical experiments in the fields of hydrology, ecology and epidemiology. See Carraro et al. (2020) <doi:10.1002/ece3.6479> for a presentation of the package; Rinaldo et al. (2014) <doi:10.1073/pnas.1322700111> for a theoretical overview on the OCN concept; Furrer and Sain (2010) <doi:10.18637/jss.v036.i10> for the construct used.
Author: Luca Carraro [aut, cre], Florian Altermatt [ctb], Emanuel A. Fronhofer [ctb], Reinhard Furrer [ctb], Isabelle Gounand [ctb], Andrea Rinaldo [ctb], Enrico Bertuzzo [aut]
Maintainer: Luca Carraro <luca.carraro@hotmail.it>

Diff between OCNet versions 0.7.1 dated 2023-03-07 and 1.0.0 dated 2023-03-27

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 MD5                               |   92 +++++++++++++++----------------
 NAMESPACE                         |    4 +
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 man/draw_thematic_OCN.Rd          |    4 -
 man/find_area_threshold_OCN.Rd    |    2 
 man/landscape_OCN.Rd              |    8 +-
 man/paths_OCN.Rd                  |    6 +-
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 man/rivergeometry_OCN.Rd          |    4 -
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More information about OCNet at CRAN
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Package nanonext updated to version 0.8.1 with previous version 0.8.0 dated 2023-03-03

Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ. NNG is a socket library providing high-performance scalability protocols, a cross-platform standard for messaging and communications. Serves as a concurrency framework for building distributed applications, utilising 'aio' objects which resolve automatically upon completion of asynchronous operations. Implements synchronisation primitives, allowing R to wait upon events being signalled by concurrent messaging threads.
Author: Charlie Gao [aut, cre] , Hibiki AI Limited [cph]
Maintainer: Charlie Gao <charlie.gao@shikokuchuo.net>

Diff between nanonext versions 0.8.0 dated 2023-03-03 and 0.8.1 dated 2023-03-27

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 MD5                     |   69 ++--
 NAMESPACE               |   15 +
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 src/aio.c               |  681 ++++++++++++++++++++++++++++++++++++++++++++++--
 src/core.c              |   13 
 src/init.c              |   24 +
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 39 files changed, 1438 insertions(+), 190 deletions(-)

More information about nanonext at CRAN
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Package MCDA updated to version 0.0.24 with previous version 0.0.22 dated 2022-09-20

Title: Support for the Multicriteria Decision Aiding Process
Description: Support for the analyst in a Multicriteria Decision Aiding (MCDA) process with algorithms, preference elicitation and data visualisation functions. Sébastien Bigaret, Richard Hodgett, Patrick Meyer, Tatyana Mironova, Alexandru Olteanu (2017) Supporting the multi-criteria decision aiding process : R and the MCDA package, Euro Journal On Decision Processes, Volume 5, Issue 1 - 4, pages 169 - 194 <doi:10.1007/s40070-017-0064-1>.
Author: Patrick Meyer, Sebastien Bigaret, Richard Hodgett, Alexandru-Liviu Olteanu
Maintainer: Patrick Meyer <patrick.meyer@imt-atlantique.fr>

Diff between MCDA versions 0.0.22 dated 2022-09-20 and 0.0.24 dated 2023-03-27

 DESCRIPTION                                            |   10 -
 MD5                                                    |   47 ++--
 NAMESPACE                                              |    1 
 R/ELECTRE3.R                                           |only
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 R/LPDMRSortInferenceExact.R                            |   56 -----
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 tests/ELECTRE.R                                        |only
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More information about MCDA at CRAN
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Package WorldFlora updated to version 1.13 with previous version 1.12 dated 2023-01-06

Title: Standardize Plant Names According to World Flora Online Taxonomic Backbone
Description: World Flora Online is an online flora of all known plants, available from <http://www.worldfloraonline.org/>. Methods are provided of matching a list of plant names (scientific names, taxonomic names, botanical names) against a static copy of the World Flora Online Taxonomic Backbone data that can be downloaded from the World Flora Online website. The World Flora Online Taxonomic Backbone is an updated version of The Plant List (<http://www.theplantlist.org/>), a working list of plant names that has become static since 2013.
Author: Roeland Kindt [cre, aut]
Maintainer: Roeland Kindt <RoelandCEKindt@gmail.com>

Diff between WorldFlora versions 1.12 dated 2023-01-06 and 1.13 dated 2023-03-27

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Package microeco updated to version 0.15.0 with previous version 0.14.1 dated 2023-02-20

Title: Microbial Community Ecology Data Analysis
Description: A series of statistical and plotting approaches in microbial community ecology based on the R6 class. The classes are designed for data preprocessing, taxa abundance plotting, alpha diversity analysis, beta diversity analysis, differential abundance test, null model analysis, network analysis, machine learning, environmental data analysis and functional analysis.
Author: Chi Liu [aut, cre], Felipe R. P. Mansoldo [ctb], Umer Zeeshan Ijaz [ctb], Chenhao Li [ctb], Yang Cao [ctb], Minjie Yao [ctb], Xiangzhen Li [ctb]
Maintainer: Chi Liu <liuchi0426@126.com>

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Package gfpop updated to version 1.1.1 with previous version 1.1.0 dated 2022-03-10

Title: Graph-Constrained Functional Pruning Optimal Partitioning
Description: Penalized parametric change-point detection by functional pruning dynamic programming algorithm. The successive means are constrained using a graph structure with edges defining the nature of the changes These changes can be unconstrained (type std), up or down constrained (type up and down) or constrained by a minimal size jump (type abs). The type null means that the graph allows us to stay on the same segment. To each edge we can associate some additional properties: a minimal gap size, a penalty, some robust parameters (K,a) for biweight (K) and Huber losses (K and a). The user can also constrain the inferred means to lie between some minimal and maximal values. Data is modeled by a cost with possible use of a robust loss, biweight and Huber (see edge parameters K and a). These costs should have a quadratic, log-linear or a log-log representation. This includes quadratic Gaussian cost (type = 'mean'), log-linear cost (type = 'variance', 'poisson' or 'exp') and log-log cost (type = [...truncated...]
Author: Vincent Runge [aut, cre], Toby Hocking [aut], Guillem Rigaill [aut], Daniel Grose [aut], Gaetano Romano [aut], Fatemeh Afghah [aut], Paul Fearnhead [aut], Michel Koskas [ctb], Arnaud Liehrmann [ctb]
Maintainer: Vincent Runge <vincent.runge@univ-evry.fr>

Diff between gfpop versions 1.1.0 dated 2022-03-10 and 1.1.1 dated 2023-03-27

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Package vtable updated to version 1.4.3 with previous version 1.4.2 dated 2023-03-14

Title: Variable Table for Variable Documentation
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>

Diff between vtable versions 1.4.2 dated 2023-03-14 and 1.4.3 dated 2023-03-27

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Package TempStable updated to version 0.1.1 with previous version 0.1.0 dated 2023-03-17

Title: A Collection of Methods to Estimate Parameters of Different Tempered Stable Distributions
Description: A collection of methods to estimate parameters of different tempered stable distributions. Currently, there are three different tempered stable distributions to choose from: Tempered stable subordinator distribution, classical tempered stable distribution, normal tempered stable distribution. The package also provides functions to compute density and probability functions and tools to run Monte Carlo simulations. This package has already been used for the estimation of tempered stable distributions (Massing (2023) <arXiv:2303.07060>). The following references form the theoretical background for various functions in this package. References for each function are explicitly listed in its documentation: Carrasco (2017) <doi:10.1017/S0266466616000025> Feuerverger (1981) <doi:10.1111/j.2517-6161.1981.tb01143.x> Hansen et al. (1996) <doi:10.1080/07350015.1996.10524656> Hansen (1982) <doi:10.2307/1912775> Kawai & Masuda (2011) <doi:10.1016/j.cam.2010.12.01 [...truncated...]
Author: Till Massing [aut], Cedric Maximilian Juessen [cre]
Maintainer: Cedric Maximilian Juessen <cedric.juessen@vwl.uni-due.de>

Diff between TempStable versions 0.1.0 dated 2023-03-17 and 0.1.1 dated 2023-03-27

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Package nanoarrow updated to version 0.1.0.2 with previous version 0.1.0.1 dated 2023-03-10

Title: Interface to the 'nanoarrow' 'C' Library
Description: Provides an 'R' interface to the 'nanoarrow' 'C' library and the 'Apache Arrow' application binary interface. Functions to import and export 'ArrowArray', 'ArrowSchema', and 'ArrowArrayStream' 'C' structures to and from 'R' objects are provided alongside helpers to facilitate zero-copy data transfer among 'R' bindings to libraries implementing the 'Arrow' 'C' data interface.
Author: Dewey Dunnington [aut, cre] , Apache Arrow [aut, cph], Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>

Diff between nanoarrow versions 0.1.0.1 dated 2023-03-10 and 0.1.0.2 dated 2023-03-27

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Package glmx updated to version 0.2-0 with previous version 0.1-3 dated 2022-04-19

Title: Generalized Linear Models Extended
Description: Extended techniques for generalized linear models (GLMs), especially for binary responses, including parametric links and heteroscedastic latent variables.
Author: Achim Zeileis [aut, cre] , Roger Koenker [aut] , Philipp Doebler [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>

Diff between glmx versions 0.1-3 dated 2022-04-19 and 0.2-0 dated 2023-03-27

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Package FactoMineR updated to version 2.8 with previous version 2.7 dated 2022-12-14

Title: Multivariate Exploratory Data Analysis and Data Mining
Description: Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. F. Husson, S. Le and J. Pages (2017).
Author: Francois Husson, Julie Josse, Sebastien Le, Jeremy Mazet
Maintainer: Francois Husson <francois.husson@agrocampus-ouest.fr>

Diff between FactoMineR versions 2.7 dated 2022-12-14 and 2.8 dated 2023-03-27

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New package cenROC with initial version 2.0.0
Package: cenROC
Title: Estimating Time-Dependent ROC Curve and AUC for Censored Data
Version: 2.0.0
Description: Contains functions to estimate a smoothed and a non-smoothed (empirical) time-dependent receiver operating characteristic curve and the corresponding area under the receiver operating characteristic curve and the optimal cutoff point for the right and interval censored survival data. See Beyene and El Ghouch (2020)<doi:10.1002/sim.8671> and Beyene and El Ghouch (2022) <doi:10.1002/bimj.202000382>.
License: GPL (>= 2)
Depends: R (>= 3.5.0)
Imports: Rcpp (>= 1.0.0), icenReg, condSURV, survival, stats, graphics, methods
LinkingTo: Rcpp, RcppEigen
Encoding: UTF-8
LazyData: true
NeedsCompilation: yes
Packaged: 2023-03-27 03:57:11 UTC; m2kas
Author: Kassu Mehari Beyene [aut, cre], Anouar El Ghouch [aut, ths]
Maintainer: Kassu Mehari Beyene <kassu.mehari@wu.edu.et>
Repository: CRAN
Date/Publication: 2023-03-27 08:10:05 UTC

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Package theft updated to version 0.4.2.4 with previous version 0.4.2.3 dated 2023-02-07

Title: Tools for Handling Extraction of Features from Time Series
Description: Consolidates and calculates different sets of time-series features from multiple 'R' and 'Python' packages including 'Rcatch22' Henderson, T. (2021) <doi:10.5281/zenodo.5546815>, 'feasts' O'Hara-Wild, M., Hyndman, R., and Wang, E. (2021) <https://CRAN.R-project.org/package=feasts>, 'tsfeatures' Hyndman, R., Kang, Y., Montero-Manso, P., Talagala, T., Wang, E., Yang, Y., and O'Hara-Wild, M. (2020) <https://CRAN.R-project.org/package=tsfeatures>, 'tsfresh' Christ, M., Braun, N., Neuffer, J., and Kempa-Liehr A.W. (2018) <doi:10.1016/j.neucom.2018.03.067>, 'TSFEL' Barandas, M., et al. (2020) <doi:10.1016/j.softx.2020.100456>, and 'Kats' Facebook Infrastructure Data Science (2021) <https://facebookresearch.github.io/Kats/>. Provides a standardised workflow from feature calculation to feature processing, machine learning classification procedures, and the production of statistical graphics.
Author: Trent Henderson [cre, aut], Annie Bryant [ctb]
Maintainer: Trent Henderson <then6675@uni.sydney.edu.au>

Diff between theft versions 0.4.2.3 dated 2023-02-07 and 0.4.2.4 dated 2023-03-27

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Package rdss updated to version 1.0.2 with previous version 1.0.0 dated 2023-01-17

Title: Companion Datasets and Functions for Research Design in the Social Sciences
Description: Helper functions to accompany the Blair, Coppock, and Humphreys (2022) "Research Design in the Social Sciences: Declaration, Diagnosis, and Redesign" <https://book.declaredesign.org>. 'rdss' includes datasets, helper functions, and plotting components to enable use and replication of the book.
Author: Graeme Blair [aut, cre] , Alexander Coppock [aut] , Macartan Humphreys [aut]
Maintainer: Graeme Blair <graeme.blair@gmail.com>

Diff between rdss versions 1.0.0 dated 2023-01-17 and 1.0.2 dated 2023-03-27

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New package mutualinf with initial version 1.1.3
Package: mutualinf
Title: Computation and Decomposition of the Mutual Information Index
Version: 1.1.3
Description: The Mutual Information Index (M) introduced to social science literature by Theil and Finizza (1971) <doi:10.1080/0022250X.1971.9989795> is a multigroup segregation measure that is highly decomposable and that according to Frankel and Volij (2011) <doi:10.1016/j.jet.2010.10.008> and Mora and Ruiz-Castillo (2011) <doi:10.1111/j.1467-9531.2011.01237.x> satisfies the Strong Unit Decomposability and Strong Group Decomposability properties. This package allows computing and decomposing the total index value into its "between" and "within" terms. These last terms can also be decomposed into their contributions, either by group or unit characteristics. The factors that produce each "within" term can also be displayed at the user's request. The results can be computed considering a variable or sets of variables that define separate clusters.
License: GPL-3
Imports: data.table, parallel, runner, stats
Encoding: UTF-8
LazyData: true
URL: https://github.com/RafaelFuentealbaC/mutualinf
BugReports: https://github.com/RafaelFuentealbaC/mutualinf/issues
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2023-03-27 00:26:55 UTC; rafae
Author: Rafael Fuentealba-Chaura [aut, cre], Ricardo Mora [aut], Julio Rojas-Mora [aut], FONDECYT/ANID Project 11170583 [fnd], MCIN/AEI/10.13039/501100011033 [fnd], UCT VIP Project FEQUIP2019-INRN-03 [fnd]
Maintainer: Rafael Fuentealba-Chaura <rafael.fuentealba97@gmail.com>
Repository: CRAN
Date/Publication: 2023-03-27 08:00:06 UTC

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New package gratis with initial version 1.0.3
Package: gratis
Title: Generating Time Series with Diverse and Controllable Characteristics
Version: 1.0.3
Description: Generates synthetic time series based on various univariate time series models including MAR and ARIMA processes. Kang, Y., Hyndman, R.J., Li, F.(2020) <doi:10.1002/sam.11461>.
LazyLoad: yes
Repository: CRAN
URL: https://github.com/ykang/gratis
BugReports: https://github.com/ykang/gratis/issues/
Depends: R (>= 3.5.0)
Imports: doRNG, dplyr, foreach, forecast (>= 8.16), GA, generics, magrittr, methods, mvtnorm, polynom, purrr, stats, tibble, tsfeatures, tsibble, utils, shiny
Suggests: feasts, fGarch, knitr, rmarkdown, rlang, shinydashboard
NeedsCompilation: no
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Packaged: 2023-03-27 02:49:40 UTC; fli
Author: Yanfei Kang [aut] , Feng Li [aut, cre] , Rob Hyndman [aut] , Mitchell O'Hara-Wild [ctb] , Bocong Zhao [ctb]
Maintainer: Feng Li <feng.li@cufe.edu.cn>
Date/Publication: 2023-03-27 07:50:02 UTC

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Package dbparser updated to version 2.0.1 with previous version 2.0.0 dated 2023-03-17

Title: Drugs Databases Parser
Description: This tool is for parsing public drug databases such as 'DrugBank' XML database <https://go.drugbank.com/>. The parsed data are then returned in a proper 'R' object called 'dvobject'.
Author: Mohammed Ali [aut, cre], Ali Ezzat [aut], Hao Zhu [rev], Emma Mendelsohn [rev]
Maintainer: Mohammed Ali <moh_fcis@yahoo.com>

Diff between dbparser versions 2.0.0 dated 2023-03-17 and 2.0.1 dated 2023-03-27

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Package GREENeR (with last version 0.1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2022-09-07 0.1.1
2022-01-27 0.1.0

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Package SemNeT (with last version 1.4.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-09-04 1.4.3
2021-06-22 1.4.2
2020-12-04 1.4.1
2020-09-26 1.4.0
2020-06-09 1.3.0
2020-03-21 1.2.0
2020-02-07 1.1.3
2019-10-28 1.1.2
2019-09-27 1.1.1
2019-08-05 1.0.0

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Package nser (with last version 1.4.5) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2023-03-10 1.4.5
2022-12-14 1.4.4

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Package rfieldclimate (with last version 0.1.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-12-21 0.1.0

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