Title: Avoid the Typical Working Directory Pain When Using 'knitr'
Description: An extension of 'knitr' that adds flexibility in several
ways. One common source of frustration with 'knitr' is that it assumes
the directory where the source file lives should be the working directory,
which is often not true. 'ezknitr' addresses this problem by giving you
complete control over where all the inputs and outputs are, and adds several
other convenient features to make rendering markdown/HTML documents easier.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ezknitr versions 0.6 dated 2016-09-16 and 0.6.2 dated 2023-04-01
DESCRIPTION | 12 - MD5 | 20 +-- NEWS.md | 8 + R/setup_test.R | 2 README.md | 17 +- build/vignette.rds |binary inst/doc/ezknitr.R | 2 inst/doc/ezknitr.Rmd | 16 +- inst/doc/ezknitr.html | 324 +++++++++++++++++++++++++++++++++++++------------- inst/joss/paper.bib | 4 vignettes/ezknitr.Rmd | 16 +- 11 files changed, 294 insertions(+), 127 deletions(-)
Title: Automatic Detection of Experimental Unit in Precision
Agriculture
Description: A part of precision agriculture is linked to the spectral image obtained from the cameras. With the image information of the agricultural experiment, the included functions facilitate the collection of spectral data associated with the experimental units. Some designs generated in R are linked to the images, which allows the use of the information of each pixel of the image in the experimental unit and the treatment. Tables and images are generated for the analysis of the precision agriculture experiment during the entire vegetative period of the crop.
Author: Felipe de Mendiburu [aut, cre],
David Mauricio [aut],
Rodrigo Morales [aut],
Roberto Quiroz [aut]
Maintainer: Felipe de Mendiburu <fmendiburu@lamolina.edu.pe>
Diff between rPAex versions 1.0.2 dated 2022-08-20 and 1.0.3 dated 2023-04-01
rPAex-1.0.2/rPAex/R/imagefield.R |only rPAex-1.0.2/rPAex/inst/external |only rPAex-1.0.2/rPAex/man/rPAex.Rd |only rPAex-1.0.3/rPAex/DESCRIPTION | 9 +++-- rPAex-1.0.3/rPAex/MD5 | 43 +++++++++++++++------------- rPAex-1.0.3/rPAex/NEWS | 6 +++ rPAex-1.0.3/rPAex/R/EUsPoint.R | 27 +++++++++-------- rPAex-1.0.3/rPAex/R/borderPoint.R | 9 ++--- rPAex-1.0.3/rPAex/R/designRaster.R | 5 +-- rPAex-1.0.3/rPAex/R/fixedPoint.R | 41 +++++++++++++-------------- rPAex-1.0.3/rPAex/R/fourPoint.R | 30 +++++++++---------- rPAex-1.0.3/rPAex/R/imageField.R |only rPAex-1.0.3/rPAex/R/movePlot.R | 9 +---- rPAex-1.0.3/rPAex/data |only rPAex-1.0.3/rPAex/inst/NEWS.Rd | 12 +++++++ rPAex-1.0.3/rPAex/man/EUsPoint.Rd | 22 +++++++------- rPAex-1.0.3/rPAex/man/borderPoint.Rd | 25 +++++++--------- rPAex-1.0.3/rPAex/man/cassava.Rd |only rPAex-1.0.3/rPAex/man/designRaster.Rd | 5 +-- rPAex-1.0.3/rPAex/man/evolution.Rd |only rPAex-1.0.3/rPAex/man/fixedPoint.Rd | 3 - rPAex-1.0.3/rPAex/man/fourPoint.Rd | 3 - rPAex-1.0.3/rPAex/man/imageField.Rd | 22 +++++++------- rPAex-1.0.3/rPAex/man/movePlot.Rd | 50 +++++++++++++++++++++------------ rPAex-1.0.3/rPAex/man/rPAex-package.Rd |only 25 files changed, 176 insertions(+), 145 deletions(-)
Title: Generate Code Lists for the OMOP Common Data Model
Description: Generate a candidate code list for the Observational Medical Outcomes Partnership (OMOP) common data model based on string matching. For a given search strategy, a candidate code list will be returned.
Author: Edward Burn [aut, cre]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CodelistGenerator versions 1.0.0 dated 2023-02-07 and 1.1.0 dated 2023-04-01
CodelistGenerator-1.0.0/CodelistGenerator/vignettes/medData02.RData |only CodelistGenerator-1.1.0/CodelistGenerator/DESCRIPTION | 8 CodelistGenerator-1.1.0/CodelistGenerator/MD5 | 43 - CodelistGenerator-1.1.0/CodelistGenerator/NEWS.md | 3 CodelistGenerator-1.1.0/CodelistGenerator/R/getCandidateCodes.R | 23 CodelistGenerator-1.1.0/CodelistGenerator/R/getMappings.R | 2 CodelistGenerator-1.1.0/CodelistGenerator/R/mockVocabRef.R | 28 CodelistGenerator-1.1.0/CodelistGenerator/R/runSearch.R | 120 +++ CodelistGenerator-1.1.0/CodelistGenerator/README.md | 40 - CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a01_Introduction_to_CodelistGenerator.Rmd | 12 CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a01_Introduction_to_CodelistGenerator.html | 43 - CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a02_Candidate_codes_OA.html | 32 - CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a03_Options_for_CodelistGenerator.html | 4 CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a04_codelists_for_medications.R | 41 + CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a04_codelists_for_medications.Rmd | 52 + CodelistGenerator-1.1.0/CodelistGenerator/inst/doc/a04_codelists_for_medications.html | 317 ++++++++-- CodelistGenerator-1.1.0/CodelistGenerator/man/getCandidateCodes.Rd | 9 CodelistGenerator-1.1.0/CodelistGenerator/tests/testthat/test-getCandidateCodes.R | 70 +- CodelistGenerator-1.1.0/CodelistGenerator/tests/testthat/test-mockVocabRef.R | 31 CodelistGenerator-1.1.0/CodelistGenerator/vignettes/a01_Introduction_to_CodelistGenerator.Rmd | 12 CodelistGenerator-1.1.0/CodelistGenerator/vignettes/a04_codelists_for_medications.Rmd | 52 + CodelistGenerator-1.1.0/CodelistGenerator/vignettes/medData02a.RData |only CodelistGenerator-1.1.0/CodelistGenerator/vignettes/medData02b.RData |only CodelistGenerator-1.1.0/CodelistGenerator/vignettes/medDataConceptClass.RData |only CodelistGenerator-1.1.0/CodelistGenerator/vignettes/medDataDoseForms.RData |only 25 files changed, 741 insertions(+), 201 deletions(-)
More information about CodelistGenerator at CRAN
Permanent link
Title: Fit and Tune Models to Detect Treatment Effect Heterogeneity
Description: Implements methods to fit Virtual Twins models (Foster et al.
(2011) <doi:10.1002/sim.4322>) for identifying subgroups with differential
effects in the context of clinical trials while controlling the probability
of falsely detecting a differential effect when the conditional average
treatment effect is uniform across the study population using parameter
selection methods proposed in Wolf et al. (2022)
<doi:10.1177/17407745221095855>.
Author: Jack Wolf [aut, cre]
Maintainer: Jack Wolf <jackwolf910@gmail.com>
Diff between tehtuner versions 0.1.1 dated 2022-11-07 and 0.3.0 dated 2023-04-01
tehtuner-0.1.1/tehtuner/man/figures/README_mnpp_plot-2.png |only tehtuner-0.3.0/tehtuner/DESCRIPTION | 10 tehtuner-0.3.0/tehtuner/MD5 | 55 - tehtuner-0.3.0/tehtuner/NAMESPACE | 45 tehtuner-0.3.0/tehtuner/NEWS.md | 18 tehtuner-0.3.0/tehtuner/R/data.R | 26 tehtuner-0.3.0/tehtuner/R/main.R | 91 + tehtuner-0.3.0/tehtuner/R/permute.R | 488 +++++----- tehtuner-0.3.0/tehtuner/R/step_1.R | 440 ++++----- tehtuner-0.3.0/tehtuner/R/step_2.R | 259 ++--- tehtuner-0.3.0/tehtuner/README.md | 114 +- tehtuner-0.3.0/tehtuner/build/partial.rdb |binary tehtuner-0.3.0/tehtuner/data/tehtuner_example.rda |binary tehtuner-0.3.0/tehtuner/inst/CITATION |only tehtuner-0.3.0/tehtuner/inst/REFERENCES.bib | 170 ++- tehtuner-0.3.0/tehtuner/man/figures/README-mnpp_plot-1.png |binary tehtuner-0.3.0/tehtuner/man/figures/README-unnamed-chunk-4-1.png |binary tehtuner-0.3.0/tehtuner/man/get_mnpp.Rd | 58 - tehtuner-0.3.0/tehtuner/man/get_mnpp.classtree.Rd |only tehtuner-0.3.0/tehtuner/man/get_theta_null.Rd | 74 - tehtuner-0.3.0/tehtuner/man/get_vt2.Rd | 38 tehtuner-0.3.0/tehtuner/man/permute.Rd | 54 - tehtuner-0.3.0/tehtuner/man/print.tunevt.Rd |only tehtuner-0.3.0/tehtuner/man/tehtuner_example.Rd | 46 tehtuner-0.3.0/tehtuner/man/tune_theta.Rd | 104 +- tehtuner-0.3.0/tehtuner/man/tunevt.Rd | 214 ++-- tehtuner-0.3.0/tehtuner/man/vt2_classtree.Rd |only tehtuner-0.3.0/tehtuner/man/vt2_ctree.Rd | 73 - tehtuner-0.3.0/tehtuner/man/vt2_lasso.Rd | 81 - tehtuner-0.3.0/tehtuner/man/vt2_rtree.Rd | 71 - tehtuner-0.3.0/tehtuner/tests/testthat/test-main.R | 4 31 files changed, 1443 insertions(+), 1090 deletions(-)
Title: Grammar Extensions to 'ggplot2'
Description: Extensions to 'ggplot2' respecting the grammar of graphics
paradigm. Geometries: geom_table(), geom_plot() and geom_grob() add insets to
plots using native data coordinates, while geom_table_npc(), geom_plot_npc()
and geom_grob_npc() do the same using "npc" coordinates through new
aesthetics "npcx" and "npcy". Statistics: select observations based on 2D
density. Positions: radial nudging away from a center point and nudging away
from a line or curve; combined stacking and nudging; combined dodging and
nudging.
Author: Pedro J. Aphalo [aut, cre] ,
Kamil Slowikowski [ctb] ,
Michal Krassowski [ctb] ,
Daniel Sabanes Bove [ctb],
Stella Banjo [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between ggpp versions 0.5.1 dated 2023-02-03 and 0.5.2 dated 2023-04-01
ggpp-0.5.1/ggpp/R/stat-fmt-tb.R |only ggpp-0.5.1/ggpp/R/stat-group-counts.R |only ggpp-0.5.1/ggpp/man/keep_these2logical.Rd |only ggpp-0.5.2/ggpp/DESCRIPTION | 21 ggpp-0.5.2/ggpp/MD5 | 467 ++++++++++++++-- ggpp-0.5.2/ggpp/NAMESPACE | 3 ggpp-0.5.2/ggpp/NEWS.md | 31 + ggpp-0.5.2/ggpp/R/annotate.r | 28 - ggpp-0.5.2/ggpp/R/dark-or-light.R | 39 - ggpp-0.5.2/ggpp/R/geom-grob.R | 483 ++++++++--------- ggpp-0.5.2/ggpp/R/geom-label-linked.r | 74 +- ggpp-0.5.2/ggpp/R/geom-margin-point.r | 93 --- ggpp-0.5.2/ggpp/R/geom-plot.R | 381 ++++++------- ggpp-0.5.2/ggpp/R/geom-point-linked.r | 79 ++ ggpp-0.5.2/ggpp/R/geom-quadrant-lines.R | 56 +- ggpp-0.5.2/ggpp/R/geom-table.R | 644 +++++++++++------------ ggpp-0.5.2/ggpp/R/geom-text-linked.r | 59 +- ggpp-0.5.2/ggpp/R/ggpp.R | 4 ggpp-0.5.2/ggpp/R/position-nudge-center.R | 8 ggpp-0.5.2/ggpp/R/position-nudge-dodge.R | 80 +- ggpp-0.5.2/ggpp/R/position-nudge-dodge2.R | 74 +- ggpp-0.5.2/ggpp/R/position-nudge-jitter.R | 33 - ggpp-0.5.2/ggpp/R/position-nudge-line.R | 322 +++++------ ggpp-0.5.2/ggpp/R/position-nudge-stack.R | 94 +-- ggpp-0.5.2/ggpp/R/position-nudge-to.R | 109 ++- ggpp-0.5.2/ggpp/R/stat-apply.R | 319 +++++------ ggpp-0.5.2/ggpp/R/stat-dens1d-filter.r | 302 +++++++++- ggpp-0.5.2/ggpp/R/stat-dens1d-labels.r | 283 +++++----- ggpp-0.5.2/ggpp/R/stat-dens2d-filter.r | 410 +++++++++++++- ggpp-0.5.2/ggpp/R/stat-dens2d-labels.r | 457 +++++++++------- ggpp-0.5.2/ggpp/R/stat-format-table.R |only ggpp-0.5.2/ggpp/R/stat-panel-counts.R | 356 ++++++------ ggpp-0.5.2/ggpp/R/stat-quadrant-counts.R | 254 ++++----- ggpp-0.5.2/ggpp/R/try-data-frame.R | 13 ggpp-0.5.2/ggpp/R/utilities.R | 89 +-- ggpp-0.5.2/ggpp/README.md | 41 + ggpp-0.5.2/ggpp/build/vignette.rds |binary ggpp-0.5.2/ggpp/inst/doc/grammar-extensions.html | 16 ggpp-0.5.2/ggpp/inst/doc/nudge-examples.html | 12 ggpp-0.5.2/ggpp/inst/extdata/logo-ggpp.png |only ggpp-0.5.2/ggpp/inst/extdata/logo-ggpp.svg |only ggpp-0.5.2/ggpp/man/dark_or_light.Rd | 24 ggpp-0.5.2/ggpp/man/geom_grob.Rd | 34 - ggpp-0.5.2/ggpp/man/geom_plot.Rd | 20 ggpp-0.5.2/ggpp/man/geom_point_s.Rd | 46 + ggpp-0.5.2/ggpp/man/geom_quadrant_lines.Rd | 17 ggpp-0.5.2/ggpp/man/geom_table.Rd | 52 - ggpp-0.5.2/ggpp/man/geom_text_s.Rd | 26 ggpp-0.5.2/ggpp/man/ggplot.Rd | 1 ggpp-0.5.2/ggpp/man/ggpp-ggproto.Rd | 20 ggpp-0.5.2/ggpp/man/position_dodgenudge.Rd | 8 ggpp-0.5.2/ggpp/man/position_jitternudge.Rd | 7 ggpp-0.5.2/ggpp/man/position_nudge_center.Rd | 4 ggpp-0.5.2/ggpp/man/position_nudge_line.Rd | 6 ggpp-0.5.2/ggpp/man/position_nudge_to.Rd | 46 + ggpp-0.5.2/ggpp/man/position_stacknudge.Rd | 8 ggpp-0.5.2/ggpp/man/stat_apply.Rd | 7 ggpp-0.5.2/ggpp/man/stat_dens1d_filter.Rd | 38 + ggpp-0.5.2/ggpp/man/stat_dens1d_labels.Rd | 30 - ggpp-0.5.2/ggpp/man/stat_dens2d_filter.Rd | 52 + ggpp-0.5.2/ggpp/man/stat_dens2d_labels.Rd | 37 + ggpp-0.5.2/ggpp/man/stat_fmt_tb.Rd | 2 ggpp-0.5.2/ggpp/man/stat_panel_counts.Rd | 87 --- ggpp-0.5.2/ggpp/man/stat_quadrant_counts.Rd | 5 ggpp-0.5.2/ggpp/man/these2logical.Rd |only ggpp-0.5.2/ggpp/tests |only 66 files changed, 3720 insertions(+), 2591 deletions(-)
Title: Parallel Processing Options for Package 'dataRetrieval'
Description: Provides methods for retrieving United States Geological Survey (USGS) water data using sequential and parallel processing (Bengtsson, 2022 <doi:10.32614/RJ-2021-048>). In addition to parallel methods, data wrangling and additional statistical attributes are provided.
Author: Josh Erickson [aut, cre, cph]
Maintainer: Josh Erickson <joshualerickson@gmail.com>
Diff between whitewater versions 0.1.2 dated 2023-02-03 and 0.1.3 dated 2023-04-01
DESCRIPTION | 6 MD5 | 14 NEWS.md | 12 R/download_USGS.R | 2204 ++++++++++++++++++++++----------------------- R/stats.R | 6 README.md | 2 tests/testthat.R | 6 tests/testthat/test-usgs.R | 17 8 files changed, 1136 insertions(+), 1131 deletions(-)
Title: Discriminative Parameter Learning of Bayesian Networks by
Differential Evolution
Description: Implements Differential Evolution (DE) to train parameters of Bayesian Networks for optimizing the Conditional Log-Likelihood (Discriminative Learning) instead of the log-likelihood (Generative Learning). Any given Bayesian Network structure encodes assumptions about conditional independencies among the attributes and will result in an error if they do not hold in the data. Such an error includes the classification dimension. The main goal of Discriminative learning is to minimize this type of error. This package provides main variants of differential evolution described in Price & Storn (1996) <doi:10.1109/ICEC.1996.542711> and recent ones, described in Tanabe & Fukunaga (2014) <doi:10.1109/CEC.2014.6900380> and Zhang & Sanderson (2009) <doi:10.1109/TEVC.2009.2014613> with adaptation mechanism for factor mutarion and crossover rate.
Author: Alejandro Platas-Lopez [aut, cre]
,
Alejandro Guerra-Hernandez [ths]
Maintainer: Alejandro Platas-Lopez <alejandroplatasl@gmail.com>
Diff between dplbnDE versions 0.1.1 dated 2022-01-10 and 0.1.2 dated 2023-04-01
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NAMESPACE | 1 + R/utils.R | 43 +++++++++++++++++++++++++++++++++++++++++++ man/accuracy.Rd |only 5 files changed, 52 insertions(+), 7 deletions(-)
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickael Canouil [aut, cre] ,
Roderick Slieker [aut] ,
Gerard Bouland [aut]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between NACHO versions 2.0.2 dated 2022-12-05 and 2.0.4 dated 2023-04-01
DESCRIPTION | 10 - MD5 | 22 +- NEWS.md | 18 ++ README.md | 3 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 9 - inst/app/app.R | 2 inst/doc/NACHO-analysis.html | 235 ++++++++++++++++----------- inst/doc/NACHO.R | 80 ++++----- inst/doc/NACHO.html | 366 +++++++++++++++++++++++++++++++------------ man/NACHO-package.Rd | 2 12 files changed, 497 insertions(+), 250 deletions(-)
Title: INsulin Secretion ANalysEr
Description: A user-friendly interface, using Shiny, to analyse glucose-stimulated insulin secretion (GSIS)
assays in pancreatic beta cells or islets.
The package allows the user to import several sets of experiments from different spreadsheets
and to perform subsequent steps: summarise in a tidy format, visualise data quality
and compare experimental conditions without omitting to account for technical confounders
such as the date of the experiment or the technician.
Together, insane is a comprehensive method that optimises pre-processing and analyses of
GSIS experiments in a friendly-user interface.
The Shiny App was initially designed for EndoC-betaH1 cell line following method described
in Ndiaye et al., 2017 (<doi:10.1016/j.molmet.2017.03.011>).
Author: Mickael Canouil [aut, cre]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between insane versions 1.0.1 dated 2022-12-05 and 1.0.2 dated 2023-04-01
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 9 +++++++++ README.md | 17 ++++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/insane.html | 20 ++++++++++---------- inst/doc/protocol.html | 3 ++- man/insane-package.Rd | 2 +- 9 files changed, 45 insertions(+), 32 deletions(-)
Title: Geometric Data Analysis
Description: Many tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>), such as MCA variants (Specific Multiple Correspondence Analysis, Class Specific Analysis), many graphical and statistical aids to interpretation (structuring factors, concentration ellipses, inductive tests, bootstrap validation, etc.) and multiple-table analysis (Multiple Factor Analysis, between- and inter-class analysis, Principal Component Analysis and Correspondence Analysis with Instrumental Variables, etc.).
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 1.7.2 dated 2022-02-22 and 2.0 dated 2023-04-01
GDAtools-1.7.2/GDAtools/R/assoc.catcont.R |only GDAtools-1.7.2/GDAtools/R/assoc.twocat.R |only GDAtools-1.7.2/GDAtools/R/assoc.twocont.R |only GDAtools-1.7.2/GDAtools/R/assoc.yx.R |only GDAtools-1.7.2/GDAtools/R/catdesc.R |only GDAtools-1.7.2/GDAtools/R/condesc.R |only GDAtools-1.7.2/GDAtools/R/darma.R |only GDAtools-1.7.2/GDAtools/R/ggassoc_boxplot.R |only GDAtools-1.7.2/GDAtools/R/ggassoc_crosstab.R |only GDAtools-1.7.2/GDAtools/R/ggassoc_phiplot.R |only GDAtools-1.7.2/GDAtools/R/ggassoc_scatter.R |only GDAtools-1.7.2/GDAtools/R/indsup.R |only GDAtools-1.7.2/GDAtools/R/pem.R |only GDAtools-1.7.2/GDAtools/R/phi.table.R |only GDAtools-1.7.2/GDAtools/R/translate.logit.R |only GDAtools-1.7.2/GDAtools/R/varsup.R |only GDAtools-1.7.2/GDAtools/R/wtable.R |only GDAtools-1.7.2/GDAtools/data/Movies.RData |only GDAtools-1.7.2/GDAtools/inst/doc/Tutorial_GDA.html |only GDAtools-1.7.2/GDAtools/inst/doc/Tutorial_GDA.html.asis |only GDAtools-1.7.2/GDAtools/man/Movies.Rd |only GDAtools-1.7.2/GDAtools/man/assoc.catcont.Rd |only GDAtools-1.7.2/GDAtools/man/assoc.twocat.Rd |only GDAtools-1.7.2/GDAtools/man/assoc.twocont.Rd |only GDAtools-1.7.2/GDAtools/man/assoc.yx.Rd |only GDAtools-1.7.2/GDAtools/man/catdesc.Rd |only GDAtools-1.7.2/GDAtools/man/condesc.Rd |only GDAtools-1.7.2/GDAtools/man/darma.Rd |only GDAtools-1.7.2/GDAtools/man/ggassoc_boxplot.Rd |only GDAtools-1.7.2/GDAtools/man/ggassoc_crosstab.Rd |only GDAtools-1.7.2/GDAtools/man/ggassoc_phiplot.Rd |only GDAtools-1.7.2/GDAtools/man/ggassoc_scatter.Rd |only GDAtools-1.7.2/GDAtools/man/indsup.Rd |only GDAtools-1.7.2/GDAtools/man/pem.Rd |only GDAtools-1.7.2/GDAtools/man/phi.table.Rd |only GDAtools-1.7.2/GDAtools/man/varsup.Rd |only GDAtools-1.7.2/GDAtools/man/wtable.Rd |only GDAtools-1.7.2/GDAtools/vignettes/Tutorial_GDA.html.asis |only GDAtools-1.7.2/GDAtools/vignettes/english |only GDAtools-1.7.2/GDAtools/vignettes/french |only GDAtools-2.0/GDAtools/DESCRIPTION | 29 - 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Title: Spatial Analysis and Data Mining for Field Ecologists
Description: Set of tools for reading, writing and transforming spatial and seasonal data, model selection and specific statistical tests for ecologists. It includes functions to interpolate regular positions of points between landmarks, to discretize polylines into regular point positions, link distant observations to points and convert a bounding box in a spatial object. It also provides miscellaneous functions for field ecologists such as spatial statistics and inference on diversity indexes, writing data.frame with Chinese characters.
Author: Patrick Giraudoux [aut, cre] ,
Jean-Philippe Antonietti [ctb],
Colin Beale [ctb],
Ulrike Groemping [ctb],
Renaud Lancelot [ctb],
David Pleydell [ctb],
Mike Treglia [ctb]
Maintainer: Patrick Giraudoux <patrick.giraudoux@univ-fcomte.fr>
Diff between pgirmess versions 2.0.0 dated 2022-02-23 and 2.0.1 dated 2023-04-01
pgirmess-2.0.0/pgirmess/R/cormat.r |only pgirmess-2.0.0/pgirmess/R/correlog.r |only pgirmess-2.0.0/pgirmess/R/diag2edge.r |only pgirmess-2.0.0/pgirmess/R/difshannonbio.r |only pgirmess-2.0.0/pgirmess/R/findR.r |only pgirmess-2.0.0/pgirmess/R/friedmanmc.r |only pgirmess-2.0.0/pgirmess/R/ks.gof.r |only pgirmess-2.0.0/pgirmess/R/pairsrp.r |only pgirmess-2.0.0/pgirmess/R/piankabio.r |only pgirmess-2.0.0/pgirmess/R/piankabioboot.r |only pgirmess-2.0.0/pgirmess/R/polycirc.r |only pgirmess-2.0.0/pgirmess/R/polycirc2.r |only pgirmess-2.0.0/pgirmess/R/shannon.r |only pgirmess-2.0.0/pgirmess/R/shannonbio.r |only pgirmess-2.0.0/pgirmess/R/shannonbioboot.r |only pgirmess-2.0.0/pgirmess/R/tabcont2categ.r |only pgirmess-2.0.0/pgirmess/R/val4symb.r |only pgirmess-2.0.0/pgirmess/R/write.delim.r |only pgirmess-2.0.1/pgirmess/DESCRIPTION | 10 +++-- pgirmess-2.0.1/pgirmess/MD5 | 48 ++++++++++++++-------------- pgirmess-2.0.1/pgirmess/NAMESPACE | 2 - pgirmess-2.0.1/pgirmess/R/cormat.R |only pgirmess-2.0.1/pgirmess/R/correlog.R |only pgirmess-2.0.1/pgirmess/R/diag2edge.R |only pgirmess-2.0.1/pgirmess/R/difshannonbio.R |only pgirmess-2.0.1/pgirmess/R/findR.R |only pgirmess-2.0.1/pgirmess/R/friedmanmc.R |only pgirmess-2.0.1/pgirmess/R/ks.gof.R |only pgirmess-2.0.1/pgirmess/R/pairsrp.R |only pgirmess-2.0.1/pgirmess/R/piankabio.R |only pgirmess-2.0.1/pgirmess/R/piankabioboot.R |only pgirmess-2.0.1/pgirmess/R/polycirc.R |only pgirmess-2.0.1/pgirmess/R/polycirc2.R |only pgirmess-2.0.1/pgirmess/R/print.mc.r | 2 - pgirmess-2.0.1/pgirmess/R/shannon.R |only pgirmess-2.0.1/pgirmess/R/shannonbio.R |only pgirmess-2.0.1/pgirmess/R/shannonbioboot.R |only pgirmess-2.0.1/pgirmess/R/tabcont2categ.R |only pgirmess-2.0.1/pgirmess/R/val4symb.R |only pgirmess-2.0.1/pgirmess/R/write.delim.R |only pgirmess-2.0.1/pgirmess/data/preybiom.rda |binary pgirmess-2.0.1/pgirmess/data/siegelp179.rda |binary pgirmess-2.0.1/pgirmess/man/friedmanmc.rd | 12 +++---- 43 files changed, 38 insertions(+), 36 deletions(-)
Title: Reads Mass Spectrometry Data in Bruker *flex Format
Description: Reads data files acquired by Bruker Daltonics' matrix-assisted
laser desorption/ionization-time-of-flight mass spectrometer of the *flex
series.
Author: Sebastian Gibb [aut, cre] ,
Samuel Granjeaud [ctb],
Alan Race [ctb]
Maintainer: Sebastian Gibb <mail@sebastiangibb.de>
Diff between readBrukerFlexData versions 1.9.0 dated 2022-06-19 and 1.9.1 dated 2023-04-01
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS | 4 ++++ R/readAcquFile-functions.R | 12 +++++++----- 4 files changed, 19 insertions(+), 13 deletions(-)
More information about readBrukerFlexData at CRAN
Permanent link
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) <doi:10.3354/esr00292> for the phenology function, Girondot, M. (2017) <doi:10.1016/j.ecolind.2017.05.063> for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) <doi:10.2993/etbi-35-02-337-353.1> for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) <doi:10.1007/s00227-019-3545-x> for tag-loss estimate, Hancock J, ..., Girondot M (2019) <doi:10.1016/j.ecolmodel.2019.04.013> for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) <doi:10.1007/s00227-020-03686-x> for aggregating several seasons.
Author: Marc Girondot
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between phenology versions 7.9 dated 2022-09-06 and 9.0 dated 2023-04-01
DESCRIPTION | 12 - MD5 | 58 +++---- NEWS | 21 ++ R/Likelihood_phenology.R | 40 ++--- R/Lnegbin.R | 325 ++++++++++++++++++++++++++++++------------- R/add_phenology.R | 85 +++++++---- R/fit_phenology.R | 169 ++++++++++++++++------ R/format_par.R | 4 R/map_phenology.R | 16 -- R/phenology-package.R | 4 R/phenology_MHmcmc.R | 7 R/phenology_MHmcmc_p.R | 20 +- R/plot.fitRMU.R | 3 R/plot.phenology.R | 9 - R/print.phenology.R | 1 R/summary.phenology.R | 14 + data/result_Gratiot.rda |binary data/result_Gratiot1.rda |binary data/result_Gratiot2.rda |binary data/result_Gratiot_Flat.rda |binary inst/shiny/babel.Rdata |binary inst/shiny/server.R | 37 ++-- man/add_phenology.Rd | 23 ++- man/figures/imgfile.png |binary man/fit_phenology.Rd | 144 +++++++++++++++---- man/likelihood_phenology.Rd | 15 - man/map_phenology.Rd | 7 man/phenology-package.Rd | 4 man/phenology_MHmcmc.Rd | 4 man/plot.phenology.Rd | 3 30 files changed, 695 insertions(+), 330 deletions(-)
Title: Download Data from Bank of Spain
Description: Tools to download data series from 'Banco de España' ('BdE')
on 'tibble' format. 'Banco de España' is the national central bank
and, within the framework of the Single Supervisory Mechanism ('SSM'),
the supervisor of the Spanish banking system along with the European
Central Bank. This package is in no way sponsored endorsed or
administered by 'Banco de España'.
Author: Diego H. Herrero [aut, cre, cph]
Maintainer: Diego H. Herrero <dev.dieghernan@gmail.com>
Diff between tidyBdE versions 0.3.1 dated 2022-11-16 and 0.3.2 dated 2023-04-01
DESCRIPTION | 12 ++- MD5 | 46 ++++++------- NAMESPACE | 2 NEWS.md | 11 ++- R/catalogs.R | 6 + R/indicators.R | 19 +++++ R/scales.R | 13 ++- R/series.R | 2 R/theme_tidybde.R | 4 - README.md | 37 ++++------ build/vignette.rds |binary inst/WORDLIST | 7 -- inst/doc/tidyBdE.Rmd | 26 +++---- inst/doc/tidyBdE.html | 118 ++++++++++++++++------------------- man/bde_catalog_load.Rd | 2 man/bde_catalog_update.Rd | 6 + man/bde_indicators.Rd | 8 +- man/figures/README-macroseries-1.png |binary man/figures/logo.png |binary man/scales_bde.Rd | 8 +- man/theme_tidybde.Rd | 4 - tests/testthat/test-indicators.R | 6 + vignettes/macroseries-1.png |binary vignettes/tidyBdE.Rmd | 26 +++---- 24 files changed, 197 insertions(+), 166 deletions(-)
Title: Utilities for Handling Strings and Text
Description: Utilities for handling character vectors
that store human-readable text (either plain or with
markup, such as HTML or LaTeX). The package provides,
in particular, functions that help with the
preparation of plain-text reports, e.g. for expanding
and aligning strings that form the lines of such
reports. The package also provides generic functions for
transforming R objects to HTML and to plain text.
Author: Enrico Schumann [aut, cre]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between textutils versions 0.2-1 dated 2021-04-01 and 0.3-2 dated 2023-04-01
DESCRIPTION | 12 MD5 | 24 NAMESPACE | 1 NEWS | 30 R/char_refs.R |only R/functions.R | 2253 ---------------------------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/btable.pdf |binary inst/tinytest/test_HTMLdecode.R | 3 inst/tinytest/test_insert.R |only inst/unitTests |only man/fill_in.Rd | 13 man/here.Rd | 8 man/insert.Rd |only 15 files changed, 85 insertions(+), 2259 deletions(-)
Title: Utilities for Dates and Times
Description: Utilities for handling dates and times, such
as selecting particular days of the week or month,
formatting timestamps as required by RSS feeds, or
converting timestamp representations of other software
(such as 'MATLAB' and 'Excel') to R. The package is
lightweight (no dependencies, pure R implementations) and
relies only on R's standard classes to represent dates
and times ('Date' and 'POSIXt'); it aims to provide
efficient implementations, through vectorisation and the
use of R's native numeric representations of timestamps
where possible.
Author: Enrico Schumann [aut, cre] ,
Unicode, Inc. [dtc, cph]
Maintainer: Enrico Schumann <es@enricoschumann.net>
Diff between datetimeutils versions 0.5-0 dated 2021-04-01 and 0.6-0 dated 2023-04-01
DESCRIPTION | 8 +- MD5 | 27 +++---- NAMESPACE | 6 + NEWS | 18 ++++ R/functions.R | 101 ++++++++++++++++++++++----- build/partial.rdb |binary build/vignette.rds |binary data/tznames.RData |binary inst/doc/datetimeutils_examples.pdf |binary inst/tinytest/test.R | 132 ++++++++++++++++++++++++++++++++++++ man/business_days.Rd | 12 +-- man/convertDate.Rd | 11 +-- man/date1904.Rd |only man/end_of_period.Rd | 6 + man/tznames.Rd | 4 - 15 files changed, 278 insertions(+), 47 deletions(-)
Title: Maximum Likelihood Estimation for Generalized Linear Mixed
Models
Description: Maximum likelihood estimation for generalized linear mixed models via Monte Carlo EM.
For a description of the algorithm see Brian S. Caffo, Wolfgang Jank and Galin L. Jones (2005)
<DOI:10.1111/j.1467-9868.2005.00499.x>.
Author: Felipe Acosta Archila
Maintainer: Felipe Acosta Archila <acosta.felipe@gmail.com>
Diff between mcemGLM versions 1.1.2 dated 2023-01-24 and 1.1.3 dated 2023-04-01
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- inst/doc/mcemGLM-vignette.pdf |binary man/summary.mcemGLMM.Rd | 2 +- src/margloglikelihoodLogit_t.cpp | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-24 0.3-4
2021-01-08 0.3-3
2017-01-09 0.3-2
2015-09-21 0.3-1
2015-05-25 0.3
2014-10-22 0.2-1.0
2013-07-24 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-05-09 3.0.0
2015-10-09 2.1.2
2015-01-27 2.1.1
2014-10-08 2.1.0
2014-04-08 2.0.0
2014-02-11 1.0.5
2014-01-20 1.0.4
2013-12-12 1.0.3
2013-12-04 1.0.2
2013-12-02 1.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-01 1.3.0