Title: Tools for Model Specification in the Latent Variable Framework
Description: Tools for model specification in the latent variable framework
(add-on to the 'lava' package). The package contains three main functionalities:
Wald tests/F-tests with improved control of the type 1 error in small samples,
adjustment for multiple comparisons when searching for local dependencies,
and adjustment for multiple comparisons when doing inference for multiple latent variable models.
Author: Brice Ozenne [aut, cre]
Maintainer: Brice Ozenne <brice.mh.ozenne@gmail.com>
Diff between lavaSearch2 versions 1.5.6 dated 2020-07-31 and 2.0.1 dated 2023-04-11
lavaSearch2-1.5.6/lavaSearch2/R/Utils-formula.R |only lavaSearch2-1.5.6/lavaSearch2/R/Utils-nlme.R |only lavaSearch2-1.5.6/lavaSearch2/R/calcDistMax.R |only lavaSearch2-1.5.6/lavaSearch2/R/compare2.R |only lavaSearch2-1.5.6/lavaSearch2/R/conditionalMoment.R |only lavaSearch2-1.5.6/lavaSearch2/R/effects2.R |only lavaSearch2-1.5.6/lavaSearch2/R/estimate2.R |only lavaSearch2-1.5.6/lavaSearch2/R/getVarCov2.R |only lavaSearch2-1.5.6/lavaSearch2/R/iid2.R |only lavaSearch2-1.5.6/lavaSearch2/R/information2.R |only lavaSearch2-1.5.6/lavaSearch2/R/leverage.R |only lavaSearch2-1.5.6/lavaSearch2/R/methods-modelsearch2.R |only lavaSearch2-1.5.6/lavaSearch2/R/multcomp.R |only lavaSearch2-1.5.6/lavaSearch2/R/package-butils-evalInParentEnv.R |only lavaSearch2-1.5.6/lavaSearch2/R/package-butils-extractData.R |only lavaSearch2-1.5.6/lavaSearch2/R/package-butils-valid.R |only lavaSearch2-1.5.6/lavaSearch2/R/prepareScore2.R |only lavaSearch2-1.5.6/lavaSearch2/R/print.modelsearch2.R |only lavaSearch2-1.5.6/lavaSearch2/R/residuals2.R |only lavaSearch2-1.5.6/lavaSearch2/R/score2.R |only lavaSearch2-1.5.6/lavaSearch2/R/skeleton.R |only lavaSearch2-1.5.6/lavaSearch2/R/summary.glht2.R |only lavaSearch2-1.5.6/lavaSearch2/R/summary.modelsearch2.R |only lavaSearch2-1.5.6/lavaSearch2/R/summary2.R |only lavaSearch2-1.5.6/lavaSearch2/R/vcov2.R |only lavaSearch2-1.5.6/lavaSearch2/inst/doc/overview.ltx |only lavaSearch2-1.5.6/lavaSearch2/inst/implementationScheme.png |only lavaSearch2-1.5.6/lavaSearch2/inst/implementationScheme.svg |only lavaSearch2-1.5.6/lavaSearch2/inst/likelihood-derivatives-LVM |only lavaSearch2-1.5.6/lavaSearch2/man/coef2-internal.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/conditionalMoment.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/dInformation2-internal.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/dfSigmaRobust.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/estfun.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/getCluster2-internal.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/getIndexOmega2-internal.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/getVarCov2-internal.Rd |only lavaSearch2-1.5.6/lavaSearch2/man/validFCTs.Rd |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-Utils-nlme.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-adjustMoment.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-cluster-lava.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-compare2.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-adjustedResiduals.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-dVcov.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-lava.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-smallSampleCorrection.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-summary2.R |only lavaSearch2-1.5.6/lavaSearch2/tests/testthat/test1-sCorrect-validObjects.R |only lavaSearch2-1.5.6/lavaSearch2/vignettes/changes.sty |only lavaSearch2-1.5.6/lavaSearch2/vignettes/modelsearch.png |only lavaSearch2-1.5.6/lavaSearch2/vignettes/overview.ltx |only lavaSearch2-1.5.6/lavaSearch2/vignettes/overview.org |only lavaSearch2-2.0.1/lavaSearch2/DESCRIPTION | 22 lavaSearch2-2.0.1/lavaSearch2/MD5 | 259 +- lavaSearch2-2.0.1/lavaSearch2/NAMESPACE | 467 ++--- lavaSearch2-2.0.1/lavaSearch2/NEWS | 166 - 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Title: Create Consort Diagram
Description: To make it easy to create CONSORT diagrams for the transparent reporting of participant allocation in randomized, controlled clinical trials. This is done by creating a standardized disposition data, and using this data as the source for the creation a standard CONSORT diagram. Human effort by supplying text labels on the node can also be achieved.
Author: Alim Dayim [aut, cre]
Maintainer: Alim Dayim <ad938@cam.ac.uk>
Diff between consort versions 1.1.0 dated 2023-01-05 and 1.2.0 dated 2023-04-11
consort-1.1.0/consort/inst/doc/consrot_diagram.R |only consort-1.1.0/consort/inst/doc/consrot_diagram.Rmd |only consort-1.1.0/consort/inst/doc/consrot_diagram.html |only consort-1.1.0/consort/vignettes/consrot_diagram.Rmd |only consort-1.2.0/consort/DESCRIPTION | 8 consort-1.2.0/consort/MD5 | 83 +- consort-1.2.0/consort/NEWS.md | 11 consort-1.2.0/consort/R/add_box.R | 40 - consort-1.2.0/consort/R/add_label_box.R | 32 consort-1.2.0/consort/R/add_side_box.R | 30 consort-1.2.0/consort/R/add_split.R | 29 consort-1.2.0/consort/R/build_grid.R | 36 consort-1.2.0/consort/R/build_grviz.R | 59 + consort-1.2.0/consort/R/consort_plot.R | 129 --- consort-1.2.0/consort/R/grid_util.R | 370 ++++------ consort-1.2.0/consort/R/grviz_util.R | 14 consort-1.2.0/consort/R/textbox.R | 18 consort-1.2.0/consort/R/utils.R | 8 consort-1.2.0/consort/README.md | 2 consort-1.2.0/consort/build/vignette.rds |binary consort-1.2.0/consort/inst/doc/consort_diagram.R |only consort-1.2.0/consort/inst/doc/consort_diagram.Rmd |only consort-1.2.0/consort/inst/doc/consort_diagram.html |only consort-1.2.0/consort/inst/examples |only consort-1.2.0/consort/man/add_box.Rd | 19 consort-1.2.0/consort/man/add_label_box.Rd | 3 consort-1.2.0/consort/man/add_side_box.Rd | 3 consort-1.2.0/consort/man/build_grid.Rd | 9 consort-1.2.0/consort/man/build_grviz.Rd | 5 consort-1.2.0/consort/man/consort_plot.Rd | 56 - consort-1.2.0/consort/man/figures/README-diagram-1.png |binary consort-1.2.0/consort/man/figures/README-unnamed-chunk-2-1.png |binary consort-1.2.0/consort/tests/testthat/Rplots.pdf |binary consort-1.2.0/consort/tests/testthat/_snaps/auto/auto-grviz.gv | 42 - consort-1.2.0/consort/tests/testthat/_snaps/auto/auto-last-grviz.gv | 20 consort-1.2.0/consort/tests/testthat/_snaps/auto/auto-nolab-grviz.gv | 14 consort-1.2.0/consort/tests/testthat/_snaps/auto/autogen-last.png |binary consort-1.2.0/consort/tests/testthat/_snaps/auto/autogen-nolab.png |binary consort-1.2.0/consort/tests/testthat/_snaps/auto/autogen.png |binary consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/build-grviz.png |binary consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/end-miss-grviz.gv |only consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/end-miss-grviz.png |only consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/grviz.gv | 42 - consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/multi-miss-grviz.gv |only consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/multi-miss-grviz.png |only consort-1.2.0/consort/tests/testthat/_snaps/build_grviz/split-comb-grviz.gv |only consort-1.2.0/consort/tests/testthat/_snaps/manually/manually-gen.png |binary consort-1.2.0/consort/tests/testthat/test-build_grviz.R | 58 + consort-1.2.0/consort/vignettes/consort_diagram.Rmd |only 49 files changed, 505 insertions(+), 635 deletions(-)
Title: Heterogeneous Effects Analysis of Conjoint Experiments
Description: A tool for analyzing conjoint experiments using Bayesian Additive Regression Trees ('BART'), a machine learning method developed by Chipman, George and McCulloch (2010) <doi:10.1214/09-AOAS285>. This tool focuses specifically on estimating, identifying, and visualizing the heterogeneity within marginal component effects, at the observation- and individual-level. It uses a variable importance measure ('VIMP') with delete-d jackknife variance estimation, following Ishwaran and Lu (2019) <doi:10.1002/sim.7803>, to obtain bias-corrected estimates of which variables drive heterogeneity in the predicted individual-level effects.
Author: Thomas Robinson [aut, cre, cph]
,
Raymond Duch [aut, cph]
Maintainer: Thomas Robinson <ts.robinson1994@gmail.com>
Diff between cjbart versions 0.2.2 dated 2022-03-02 and 0.3.0 dated 2023-04-11
DESCRIPTION | 10 MD5 | 41 NAMESPACE | 2 NEWS.md | 14 R/cjbart.R | 367 ++++++ R/generics.R | 78 - R/pIMCE.R |only R/vimp.R | 56 - README.md | 6 build/partial.rdb |binary build/vignette.rds |binary inst/doc/cjbart-demo.R | 48 inst/doc/cjbart-demo.Rmd | 60 - inst/doc/cjbart-demo.html | 2446 +++++++++++++++++++++++++++++++++++++++++++--- man/AMCE.Rd |only man/IMCE.Rd | 2 man/RMCE.Rd | 2 man/cjbart.Rd | 13 man/het_vimp.Rd | 10 man/pIMCE.Rd |only man/plot.cjbart.Rd | 2 man/summary.cjbart.Rd | 35 vignettes/cjbart-demo.Rmd | 60 - 23 files changed, 2918 insertions(+), 334 deletions(-)
Title: Volume Approximation and Sampling of Convex Polytopes
Description: Provides an R interface for 'volesti' C++ package. 'volesti' computes estimations of volume
of polytopes given by (i) a set of points, (ii) linear inequalities or (iii) Minkowski sum of segments
(a.k.a. zonotopes). There are three algorithms for volume estimation as well as algorithms
for sampling, rounding and rotating polytopes. Moreover, 'volesti' provides algorithms for
estimating copulas useful in computational finance. Methods implemented in 'volesti' are described
in A. Chalkis and V. Fisikopoulos (2022) <doi:10.32614/RJ-2021-077> and references therein.
Author: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com> [aut, cph, cre],
Apostolos Chalkis <tolis.chal@gmail.com> [cph, aut],
contributors in file inst/AUTHORS
Maintainer: Vissarion Fisikopoulos <vissarion.fisikopoulos@gmail.com>
Diff between volesti versions 1.1.2-4 dated 2023-04-03 and 1.1.2-6 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 6 +++++- src/external/lpsolve/build/lp_solve/lp_presolve.c | 10 ++++++---- 4 files changed, 18 insertions(+), 12 deletions(-)
Title: Evaluate Trending Models
Description: Provides a coherent interface for evaluating models fit with the
trending package. This package is part of the RECON
(<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Author: Dirk Schumacher [aut],
Thibaut Jombart [aut, cre],
Tim Taylor [ctb]
Maintainer: Thibaut Jombart <thibautjombart@gmail.com>
Diff between trendeval versions 0.0.1 dated 2020-11-20 and 0.1.0 dated 2023-04-11
trendeval-0.0.1/trendeval/R/model-evaluation.R |only trendeval-0.0.1/trendeval/man/evaluate_models.Rd |only trendeval-0.0.1/trendeval/tests/testthat/test-evaluate_models.R |only trendeval-0.1.0/trendeval/DESCRIPTION | 28 +- trendeval-0.1.0/trendeval/MD5 | 34 ++- trendeval-0.1.0/trendeval/NAMESPACE | 60 ++++++ trendeval-0.1.0/trendeval/NEWS.md |only trendeval-0.1.0/trendeval/R/calculate_aic.R |only trendeval-0.1.0/trendeval/R/calculate_mae.R |only trendeval-0.1.0/trendeval/R/calculate_rmse.R |only trendeval-0.1.0/trendeval/R/calculate_rsq.R |only trendeval-0.1.0/trendeval/R/calculate_yardstick.R |only trendeval-0.1.0/trendeval/R/evaluate_aic.R |only trendeval-0.1.0/trendeval/R/evaluate_resampling.R |only trendeval-0.1.0/trendeval/R/imports.R |only trendeval-0.1.0/trendeval/R/reexports.R |only trendeval-0.1.0/trendeval/R/utils.r | 65 ++++-- trendeval-0.1.0/trendeval/README.md | 95 +++------- trendeval-0.1.0/trendeval/man/calculate_aic.Rd |only trendeval-0.1.0/trendeval/man/calculate_mae.Rd |only trendeval-0.1.0/trendeval/man/calculate_rmse.Rd |only trendeval-0.1.0/trendeval/man/calculate_rsq.Rd |only trendeval-0.1.0/trendeval/man/evaluate_aic.Rd |only trendeval-0.1.0/trendeval/man/evaluate_resampling.Rd |only trendeval-0.1.0/trendeval/man/reexports.Rd |only trendeval-0.1.0/trendeval/tests/testthat/test-calculate_aic.R |only trendeval-0.1.0/trendeval/tests/testthat/test-calculate_mae.R |only trendeval-0.1.0/trendeval/tests/testthat/test-calculate_rmse.R |only trendeval-0.1.0/trendeval/tests/testthat/test-calculate_rsq.R |only trendeval-0.1.0/trendeval/tests/testthat/test-evaluate_aic.R | 44 +++- 30 files changed, 211 insertions(+), 115 deletions(-)
Title: Statistical Power and Sample Size Calculation Tools
Description: Statistical power and minimum required sample size calculations for (1) testing a proportion (one-sample) against a constant, (2) testing a mean (one-sample) against a constant, (3) testing difference between two proportions (independent samples), (4) testing difference between two means or groups (parametric and non-parametric tests for independent and paired samples), (5) testing a correlation (one-sample) against a constant, (6) testing difference between two correlations (independent samples), (7) testing a single coefficient in multiple linear regression, logistic regression, and Poisson regression (with standardized or unstandardized coefficients, with no covariates or covariate adjusted), (8) testing an indirect effect (with standardized or unstandardized coefficients, with no covariates or covariate adjusted) in the mediation analysis (Sobel, Joint, and Monte Carlo tests), (9) testing an R-squared against zero in linear regression, (10) testing an R-squared difference agai [...truncated...]
Author: Metin Bulus [aut, cre]
Maintainer: Metin Bulus <bulusmetin@gmail.com>
Diff between pwrss versions 0.3.0 dated 2023-03-12 and 0.3.1 dated 2023-04-11
pwrss-0.3.0/pwrss/man/plot.t1t2.Rd |only pwrss-0.3.0/pwrss/man/power.chisq.test.Rd |only pwrss-0.3.0/pwrss/man/power.f.test.Rd |only pwrss-0.3.0/pwrss/man/power.t.test.Rd |only pwrss-0.3.0/pwrss/man/power.z.test.Rd |only pwrss-0.3.0/pwrss/man/pwrss.chisq.gofct.Rd |only pwrss-0.3.0/pwrss/man/pwrss.f.ancova.Rd |only pwrss-0.3.0/pwrss/man/pwrss.f.reg.Rd |only pwrss-0.3.0/pwrss/man/pwrss.f.rmanova.Rd |only pwrss-0.3.0/pwrss/man/pwrss.np.2means.Rd |only pwrss-0.3.0/pwrss/man/pwrss.t.2means.Rd |only pwrss-0.3.0/pwrss/man/pwrss.t.mean.Rd |only pwrss-0.3.0/pwrss/man/pwrss.t.reg.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.2corrs.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.2props.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.corr.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.logreg.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.med.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.pois.Rd |only pwrss-0.3.0/pwrss/man/pwrss.z.prop.Rd |only pwrss-0.3.0/pwrss/vignettes/med.tiff |only pwrss-0.3.1/pwrss/DESCRIPTION | 10 pwrss-0.3.1/pwrss/MD5 | 67 pwrss-0.3.1/pwrss/NAMESPACE | 1 pwrss-0.3.1/pwrss/NEWS.md | 7 pwrss-0.3.1/pwrss/R/pwrss.R | 138 pwrss-0.3.1/pwrss/README.md | 40 pwrss-0.3.1/pwrss/build/vignette.rds |binary pwrss-0.3.1/pwrss/inst/CITATION | 4 pwrss-0.3.1/pwrss/inst/doc/examples.R | 199 pwrss-0.3.1/pwrss/inst/doc/examples.Rmd | 677 ++- pwrss-0.3.1/pwrss/inst/doc/examples.html | 3209 ++++++++++++---- pwrss-0.3.1/pwrss/man/0-Generic-Chi-square-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-F-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-t-Test.Rd |only pwrss-0.3.1/pwrss/man/0-Generic-z-Test.Rd |only pwrss-0.3.1/pwrss/man/1-One-Correlation.Rd |only pwrss-0.3.1/pwrss/man/1-One-Mean.Rd |only pwrss-0.3.1/pwrss/man/1-One-Proportion.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Correlations.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Groups-NP.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Means.Rd |only pwrss-0.3.1/pwrss/man/2-Two-Proportions.Rd |only pwrss-0.3.1/pwrss/man/4-Indirect-Effect-in-Mediation.Rd |only pwrss-0.3.1/pwrss/man/4-Linear-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/4-Linear-Regression-Rsquared.Rd |only pwrss-0.3.1/pwrss/man/4-Logistic-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/4-Poisson-Regression-Beta.Rd |only pwrss-0.3.1/pwrss/man/5-ANOVA-and-ANCOVA.Rd |only pwrss-0.3.1/pwrss/man/5-GOF-or-Independence.Rd |only pwrss-0.3.1/pwrss/man/5-Repeated-Measures-ANOVA.Rd |only pwrss-0.3.1/pwrss/man/6-Plot-Type-I-and-II-Errors.Rd |only pwrss-0.3.1/pwrss/vignettes/app.png |only pwrss-0.3.1/pwrss/vignettes/examples.Rmd | 677 ++- pwrss-0.3.1/pwrss/vignettes/hex.png |only pwrss-0.3.1/pwrss/vignettes/license.png |only pwrss-0.3.1/pwrss/vignettes/med.png |only 57 files changed, 3577 insertions(+), 1452 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.1.6 dated 2023-03-17 and 0.1.7 dated 2023-04-11
PriceIndices-0.1.6/PriceIndices/man/figures/README-unnamed-chunk-66-1.png |only PriceIndices-0.1.7/PriceIndices/DESCRIPTION | 6 PriceIndices-0.1.7/PriceIndices/MD5 | 41 - PriceIndices-0.1.7/PriceIndices/NAMESPACE | 2 PriceIndices-0.1.7/PriceIndices/NEWS.md | 9 PriceIndices-0.1.7/PriceIndices/R/PriceIndices.R | 4 PriceIndices-0.1.7/PriceIndices/R/f_bilateral_indicators.R | 44 + PriceIndices-0.1.7/PriceIndices/R/f_comparing_indices.R | 74 +- PriceIndices-0.1.7/PriceIndices/R/f_internal.R | 344 +++++++++- PriceIndices-0.1.7/PriceIndices/R/f_multilateral_indicators.R | 83 ++ PriceIndices-0.1.7/PriceIndices/README.md | 128 ++- PriceIndices-0.1.7/PriceIndices/inst/doc/PriceIndices.R | 26 PriceIndices-0.1.7/PriceIndices/inst/doc/PriceIndices.Rmd | 43 - PriceIndices-0.1.7/PriceIndices/inst/doc/PriceIndices.html | 31 PriceIndices-0.1.7/PriceIndices/man/PriceIndices.Rd | 8 PriceIndices-0.1.7/PriceIndices/man/bennet.Rd | 2 PriceIndices-0.1.7/PriceIndices/man/compare_indices_jk.Rd | 18 PriceIndices-0.1.7/PriceIndices/man/figures/README-unnamed-chunk-19-1.png |binary PriceIndices-0.1.7/PriceIndices/man/figures/README-unnamed-chunk-20-1.png |binary PriceIndices-0.1.7/PriceIndices/man/figures/README-unnamed-chunk-67-1.png |only PriceIndices-0.1.7/PriceIndices/man/figures/README-unnamed-chunk-68-1.png |only PriceIndices-0.1.7/PriceIndices/man/mmontgomery.Rd |only PriceIndices-0.1.7/PriceIndices/man/montgomery.Rd |only PriceIndices-0.1.7/PriceIndices/vignettes/PriceIndices.Rmd | 43 - 24 files changed, 777 insertions(+), 129 deletions(-)
Title: Nonlinear Nonparametric Statistics
Description: Nonlinear nonparametric statistics using partial moments. Partial moments are the elements of variance and asymptotically approximate the area of f(x). These robust statistics provide the basis for nonlinear analysis while retaining linear equivalences. NNS offers: Numerical integration, Numerical differentiation, Clustering, Correlation, Dependence, Causal analysis, ANOVA, Regression, Classification, Seasonality, Autoregressive modeling, Normalization and Stochastic dominance. All routines based on: Viole, F. and Nawrocki, D. (2013), Nonlinear Nonparametric Statistics: Using Partial Moments (ISBN: 1490523995).
Author: Fred Viole [aut, cre],
Roberto Spadim [ctb]
Maintainer: Fred Viole <ovvo.financial.systems@gmail.com>
Diff between NNS versions 0.9.6 dated 2023-03-08 and 0.9.7 dated 2023-04-11
DESCRIPTION | 8 +++--- MD5 | 36 +++++++++++++-------------- R/Boost.R | 25 ++++++++----------- R/Causal_matrix.R | 9 ++---- R/Causation.R | 2 - R/Dependence_matrix.R | 4 +-- R/NNS_MC.R | 2 - R/NNS_term_matrix.R | 7 ++--- R/Regression.R | 27 ++++++++++---------- R/Stack.R | 7 ++--- R/dy_d_wrt.R | 2 - README.md | 4 +-- inst/doc/NNSvignette_Classification.R | 15 +++++------ inst/doc/NNSvignette_Classification.Rmd | 17 ++++++------- inst/doc/NNSvignette_Classification.html | 40 +++++++++++++++---------------- man/NNS.MC.Rd | 2 - man/NNS.term.matrix.Rd | 4 --- man/dy.d_.Rd | 2 - vignettes/NNSvignette_Classification.Rmd | 17 ++++++------- 19 files changed, 109 insertions(+), 121 deletions(-)
Title: String Manipulation Package for Those Familiar with 'Microsoft
Excel'
Description: The goal of 'forstringr' is to enable complex string
manipulation in R especially to those more familiar with LEFT(),
RIGHT(), and MID() functions in Microsoft Excel. The package combines
the power of 'stringr' with other manipulation packages such as
'dplyr' and 'tidyr'.
Author: Ezekiel Ogundepo [aut, cre] ,
Olubukunola Oyedele [ctb],
Fatimo Adebanjo [ctb]
Maintainer: Ezekiel Ogundepo <gbganalyst@gmail.com>
Diff between forstringr versions 0.0.1 dated 2023-02-27 and 0.1.1 dated 2023-04-11
DESCRIPTION | 33 ++--- MD5 | 40 +++--- NAMESPACE | 29 ++-- NEWS.md | 8 + R/length_omit_na.R | 6 R/str_englue.R |only R/str_extract_part.R | 10 + R/str_left.R | 6 R/str_mid.R | 54 +++++--- R/str_right.R | 6 R/str_rm_whitespace.R | 10 + R/str_split_extract.R | 61 +++++---- README.md | 81 +++++++++++- build/vignette.rds |binary inst/doc/forstringr.R | 20 ++- inst/doc/forstringr.Rmd | 44 +++++- inst/doc/forstringr.html | 210 ++++++++++++++++++--------------- man/figures/README-example_6-1.png |only man/str_englue.Rd |only man/str_extract_part.Rd | 72 +++++------ tests/testthat/test-str_englue.R |only tests/testthat/test-str_extract_part.R | 26 ++-- vignettes/forstringr.Rmd | 44 +++++- 23 files changed, 490 insertions(+), 270 deletions(-)
Title: Map Layers and Spatial Utilities for British Columbia
Description: Various layers of B.C., including administrative boundaries, natural resource management boundaries, census boundaries etc. All layers are available in BC Albers (<https://spatialreference.org/ref/epsg/nad83-bc-albers/>) equal-area projection, which is the B.C. government standard. The layers are sourced from the British Columbia and Canadian government under open licenses, including B.C. Data Catalogue (<https://data.gov.bc.ca>), the Government of Canada Open Data Portal (<https://open.canada.ca/en/open-data>), and Statistics Canada (<https://www.statcan.gc.ca/en/reference/licence>).
Author: Andy Teucher [aut, cre] ,
Sam Albers [aut, ctb] ,
Stephanie Hazlitt [aut, ctb] ,
Province of British Columbia [cph]
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between bcmaps versions 1.1.0 dated 2023-01-06 and 1.2.0 dated 2023-04-11
bcmaps-1.1.0/bcmaps/R/bcmaps.R |only bcmaps-1.1.0/bcmaps/man/bcmaps.Rd |only bcmaps-1.1.0/bcmaps/tests/testthat/test-get_poly_attribute.R |only bcmaps-1.2.0/bcmaps/DESCRIPTION | 18 bcmaps-1.2.0/bcmaps/MD5 | 157 +++--- bcmaps-1.2.0/bcmaps/NAMESPACE | 1 bcmaps-1.2.0/bcmaps/NEWS.md | 17 bcmaps-1.2.0/bcmaps/R/bc_bound.R | 29 - bcmaps-1.2.0/bcmaps/R/bcmaps-package.R |only bcmaps-1.2.0/bcmaps/R/get-non-catalogue-data.R | 37 + bcmaps-1.2.0/bcmaps/R/get_data.R | 27 - bcmaps-1.2.0/bcmaps/R/make_shortcuts.R | 11 bcmaps-1.2.0/bcmaps/R/raster_by_poly.R | 5 bcmaps-1.2.0/bcmaps/R/shortcuts.R | 245 +++++++--- bcmaps-1.2.0/bcmaps/R/sysdata.rda |binary bcmaps-1.2.0/bcmaps/R/utils.R | 168 +++---- bcmaps-1.2.0/bcmaps/R/zzz.R | 24 + bcmaps-1.2.0/bcmaps/README.md | 61 -- bcmaps-1.2.0/bcmaps/build/vignette.rds |binary bcmaps-1.2.0/bcmaps/inst/WORDLIST |only bcmaps-1.2.0/bcmaps/inst/doc/add_points.Rmd | 54 -- bcmaps-1.2.0/bcmaps/inst/doc/add_points.html | 264 +++++------ bcmaps-1.2.0/bcmaps/man/airzones.Rd | 7 bcmaps-1.2.0/bcmaps/man/bc_bbox.Rd | 4 bcmaps-1.2.0/bcmaps/man/bc_bound.Rd | 7 bcmaps-1.2.0/bcmaps/man/bc_bound_hres.Rd | 7 bcmaps-1.2.0/bcmaps/man/bc_cities.Rd | 7 bcmaps-1.2.0/bcmaps/man/bc_neighbours.Rd | 7 bcmaps-1.2.0/bcmaps/man/bcmaps-package.Rd |only bcmaps-1.2.0/bcmaps/man/bec.Rd | 7 bcmaps-1.2.0/bcmaps/man/census_dissemination_area.Rd | 11 bcmaps-1.2.0/bcmaps/man/census_division.Rd | 7 bcmaps-1.2.0/bcmaps/man/census_economic.Rd | 7 bcmaps-1.2.0/bcmaps/man/census_metropolitan_area.Rd | 11 bcmaps-1.2.0/bcmaps/man/census_subdivision.Rd | 7 bcmaps-1.2.0/bcmaps/man/census_tract.Rd | 7 bcmaps-1.2.0/bcmaps/man/combine_nr_rd.Rd | 6 bcmaps-1.2.0/bcmaps/man/ecoprovinces.Rd | 7 bcmaps-1.2.0/bcmaps/man/ecoregions.Rd | 7 bcmaps-1.2.0/bcmaps/man/ecosections.Rd | 7 bcmaps-1.2.0/bcmaps/man/figures |only bcmaps-1.2.0/bcmaps/man/fix_geo_problems.Rd | 15 bcmaps-1.2.0/bcmaps/man/fsa.Rd | 6 bcmaps-1.2.0/bcmaps/man/get_layer.Rd | 9 bcmaps-1.2.0/bcmaps/man/get_poly_attribute.Rd | 27 - bcmaps-1.2.0/bcmaps/man/gw_aquifers.Rd | 7 bcmaps-1.2.0/bcmaps/man/health_chsa.Rd | 7 bcmaps-1.2.0/bcmaps/man/health_ha.Rd | 7 bcmaps-1.2.0/bcmaps/man/health_hsda.Rd | 7 bcmaps-1.2.0/bcmaps/man/health_lha.Rd | 7 bcmaps-1.2.0/bcmaps/man/hydrozones.Rd | 7 bcmaps-1.2.0/bcmaps/man/make_shortcuts.Rd | 2 bcmaps-1.2.0/bcmaps/man/mapsheets_250K.Rd | 6 bcmaps-1.2.0/bcmaps/man/mapsheets_50K.Rd | 6 bcmaps-1.2.0/bcmaps/man/municipalities.Rd | 7 bcmaps-1.2.0/bcmaps/man/nr_areas.Rd | 7 bcmaps-1.2.0/bcmaps/man/nr_districts.Rd | 7 bcmaps-1.2.0/bcmaps/man/nr_regions.Rd | 7 bcmaps-1.2.0/bcmaps/man/regional_districts.Rd | 7 bcmaps-1.2.0/bcmaps/man/self_union.Rd | 30 - bcmaps-1.2.0/bcmaps/man/transform_bc_albers.Rd | 6 bcmaps-1.2.0/bcmaps/man/tsa.Rd | 7 bcmaps-1.2.0/bcmaps/man/water_districts.Rd | 7 bcmaps-1.2.0/bcmaps/man/water_precincts.Rd | 7 bcmaps-1.2.0/bcmaps/man/watercourses_15M.Rd | 6 bcmaps-1.2.0/bcmaps/man/watercourses_5M.Rd | 6 bcmaps-1.2.0/bcmaps/man/wsc_drainages.Rd | 7 bcmaps-1.2.0/bcmaps/tests/testthat/setup.R | 2 bcmaps-1.2.0/bcmaps/tests/testthat/test-cded.R | 5 bcmaps-1.2.0/bcmaps/tests/testthat/test-data_functions.R | 2 bcmaps-1.2.0/bcmaps/tests/testthat/test-fix_geo_problems.R | 167 ++---- bcmaps-1.2.0/bcmaps/tests/testthat/test-self_union.R | 4 bcmaps-1.2.0/bcmaps/tests/testthat/test-utils.R | 8 bcmaps-1.2.0/bcmaps/tools/readme/bc_neighbours-1.png |binary bcmaps-1.2.0/bcmaps/tools/readme/bec-1.png |binary bcmaps-1.2.0/bcmaps/vignettes/add_points.Rmd | 54 -- bcmaps-1.2.0/bcmaps/vignettes/add_points.Rmd.orig | 2 bcmaps-1.2.0/bcmaps/vignettes/vignette-fig-convert-1.png |binary bcmaps-1.2.0/bcmaps/vignettes/vignette-fig-overlay-1.png |binary 79 files changed, 945 insertions(+), 764 deletions(-)
Title: Tools for Computational Optimal Transport
Description: Transport theory has seen much success in many fields of statistics and machine learning. We provide a variety of algorithms to compute Wasserstein distance, barycenter, and others. See Peyré and Cuturi (2019) <doi:10.1561/2200000073> for the general exposition to the study of computational optimal transport.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisungyou@outlook.com>
Diff between T4transport versions 0.1.1 dated 2022-09-03 and 0.1.2 dated 2023-04-11
T4transport-0.1.1/T4transport/R/distance_ipot.R |only T4transport-0.1.1/T4transport/R/distance_sinkhorn.R |only T4transport-0.1.1/T4transport/R/distance_wasserstein.R |only T4transport-0.1.2/T4transport/DESCRIPTION | 8 - T4transport-0.1.2/T4transport/MD5 | 55 +++++------ T4transport-0.1.2/T4transport/NAMESPACE | 1 T4transport-0.1.2/T4transport/NEWS.md | 5 + T4transport-0.1.2/T4transport/R/RcppExports.R | 8 + T4transport-0.1.2/T4transport/R/auxiliary_ecdf.R | 14 ++ T4transport-0.1.2/T4transport/R/auxiliary_inputs.R | 42 ++++++-- T4transport-0.1.2/T4transport/R/dist_swdist.R |only T4transport-0.1.2/T4transport/R/dist_wass_ipot.R |only T4transport-0.1.2/T4transport/R/dist_wass_sinkhorn.R |only T4transport-0.1.2/T4transport/R/dist_wass_wasserstein.R |only T4transport-0.1.2/T4transport/R/gauss_median1d.R | 9 + T4transport-0.1.2/T4transport/R/gauss_medianpd.R | 15 +-- T4transport-0.1.2/T4transport/R/image_bary14C.R | 2 T4transport-0.1.2/T4transport/R/later_gw.R |only T4transport-0.1.2/T4transport/README.md | 7 - T4transport-0.1.2/T4transport/build/partial.rdb |binary T4transport-0.1.2/T4transport/inst/REFERENCES.bib | 13 ++ T4transport-0.1.2/T4transport/man/gaussmedpd.Rd | 6 - T4transport-0.1.2/T4transport/man/imagebary14C.Rd | 2 T4transport-0.1.2/T4transport/man/ipot.Rd | 6 - T4transport-0.1.2/T4transport/man/sinkhorn.Rd | 14 +- T4transport-0.1.2/T4transport/man/swdist.Rd |only T4transport-0.1.2/T4transport/man/wasserstein.Rd | 10 +- T4transport-0.1.2/T4transport/src/Makevars | 2 T4transport-0.1.2/T4transport/src/Makevars.win | 2 T4transport-0.1.2/T4transport/src/RcppExports.cpp | 26 ++++- T4transport-0.1.2/T4transport/src/elementary.cpp | 44 ++++++++ T4transport-0.1.2/T4transport/src/elementary.h | 9 + T4transport-0.1.2/T4transport/src/src_gaussian.cpp | 79 +++++++++++++++- 33 files changed, 289 insertions(+), 90 deletions(-)
Title: Interactive Application for Analyzing Representativeness and
Nonresponse Bias
Description: Provides access to the
Idea Data Center (IDC) application for conducting
nonresponse bias analysis (NRBA). The IDC NRBA app is an
interactive, browser-based Shiny application that can be used to
analyze survey data with respect to response rates,
representativeness, and nonresponse bias. This app provides a user-friendly
interface to statistical methods implemented by the 'nrba' package.
Krenzke, Van de Kerckhove, and Mohadjer (2005)
<http://www.asasrms.org/Proceedings/y2005/files/JSM2005-000572.pdf>
and Lohr and Riddles (2016)
<https://www150.statcan.gc.ca/n1/en/pub/12-001-x/2016002/article/14677-eng.pdf?st=q7PyNsGR>
provide an overview of the statistical methods implemented in the application.
Author: Ben Schneider [aut, cre] ,
Tamara Nimkoff [aut],
Anthony Fucci [aut],
Andy Cruse [aut],
Alexander Cates [aut],
Jim Green [aut],
Westat [cph]
Maintainer: Ben Schneider <BenjaminSchneider@westat.com>
Diff between idcnrba versions 0.1.0 dated 2023-03-24 and 0.2.0 dated 2023-04-11
DESCRIPTION | 6 MD5 | 16 - NEWS.md | 18 ++ inst/output_table_dictionary.csv | 222 +++++++++++++-------------- inst/resources/App-Guide-for-Welcome-Page.md | 86 +++++----- inst/shiny/app.Rmd | 158 +++++++++++++------ inst/shiny/css/style.css | 36 ++++ inst/types.csv | 20 +- tests/testthat/test-csv_types.R | 10 + 9 files changed, 346 insertions(+), 226 deletions(-)
Title: Interface to the Pan-STARRS API
Description: An interface to the API for 'Pan-STARRS1', a data archive of
the PS1 wide-field astronomical survey. The package allows access to
the PS1 catalog and to the PS1 images. (see
<https://outerspace.stsci.edu/display/PANSTARRS/> for more
information). You can use it to plan astronomical observations, make
guidance pictures, find magnitudes in five broadband filters (g, r, i,
z, y) and more.
Author: Grigory Uskov [cre, aut]
Maintainer: Grigory Uskov <uskov.russia@gmail.com>
Diff between panstarrs versions 0.1.0 dated 2022-02-07 and 0.2.0 dated 2023-04-11
panstarrs-0.1.0/panstarrs/R/utils-pipe.R |only panstarrs-0.1.0/panstarrs/man/pipe.Rd |only panstarrs-0.2.0/panstarrs/DESCRIPTION | 21 panstarrs-0.2.0/panstarrs/MD5 | 53 - panstarrs-0.2.0/panstarrs/NAMESPACE | 15 panstarrs-0.2.0/panstarrs/NEWS.md | 21 panstarrs-0.2.0/panstarrs/R/get_images.R | 131 ++-- panstarrs-0.2.0/panstarrs/R/object_catalog_search.R | 473 ++++++++++------ panstarrs-0.2.0/panstarrs/R/sysdata.rda |only panstarrs-0.2.0/panstarrs/R/utils.R |only panstarrs-0.2.0/panstarrs/README.md | 15 panstarrs-0.2.0/panstarrs/build/vignette.rds |binary panstarrs-0.2.0/panstarrs/inst/doc/PS1_Cat.R | 34 - panstarrs-0.2.0/panstarrs/inst/doc/PS1_Cat.Rmd | 52 - panstarrs-0.2.0/panstarrs/inst/doc/PS1_Cat.html | 448 ++++++++++----- panstarrs-0.2.0/panstarrs/inst/doc/PS1_Images.R | 46 - panstarrs-0.2.0/panstarrs/inst/doc/PS1_Images.Rmd | 68 +- panstarrs-0.2.0/panstarrs/inst/doc/PS1_Images.html | 586 +++++++++++++------- panstarrs-0.2.0/panstarrs/man/checklegal.Rd | 3 panstarrs-0.2.0/panstarrs/man/convert_types.Rd |only panstarrs-0.2.0/panstarrs/man/get_metadata.Rd |only panstarrs-0.2.0/panstarrs/man/ps1_cone.Rd | 4 panstarrs-0.2.0/panstarrs/man/ps1_crossmatch.Rd | 4 panstarrs-0.2.0/panstarrs/man/ps1_mast_query.Rd | 3 panstarrs-0.2.0/panstarrs/man/ps1_metadata.Rd | 7 panstarrs-0.2.0/panstarrs/man/ps1_resolve.Rd | 4 panstarrs-0.2.0/panstarrs/man/ps1_search.Rd | 4 panstarrs-0.2.0/panstarrs/man/validate_radec.Rd |only panstarrs-0.2.0/panstarrs/tests |only panstarrs-0.2.0/panstarrs/vignettes/PS1_Cat.Rmd | 52 - panstarrs-0.2.0/panstarrs/vignettes/PS1_Images.Rmd | 68 +- 31 files changed, 1339 insertions(+), 773 deletions(-)
Title: Manipulating Labelled Data
Description: Work with labelled data imported from 'SPSS'
or 'Stata' with 'haven' or 'foreign'. This package
provides useful functions to deal with "haven_labelled" and
"haven_labelled_spss" classes introduced by 'haven' package.
Author: Joseph Larmarange [aut, cre] ,
Daniel Ludecke [ctb],
Hadley Wickham [ctb],
Michal Bojanowski [ctb],
Francois Briatte [ctb]
Maintainer: Joseph Larmarange <joseph@larmarange.net>
Diff between labelled versions 2.10.0 dated 2022-09-14 and 2.11.0 dated 2023-04-11
DESCRIPTION | 12 MD5 | 114 +++--- NEWS.md | 16 R/copy_labels.R | 2 R/data.R | 2 R/drop_unused_value_labels.R | 2 R/labelled-package.R | 1 R/lookfor.R | 198 ++++++++--- R/na_values.R | 134 +++++-- R/recode.R | 65 +++ R/recode_if.R | 7 R/remove_attributes.R | 5 R/remove_labels.R | 37 +- R/retrocompatibility.R | 16 R/tagged_na.R | 13 R/to_character.R | 21 - R/to_factor.R | 135 +++++-- R/to_labelled.R | 54 +-- R/to_na.R | 2 R/val_labels.R | 127 +++++-- R/var_label.R | 97 ++++- README.md | 18 - build/vignette.rds |binary inst/WORDLIST | 5 inst/doc/intro_labelled.R | 32 + inst/doc/intro_labelled.Rmd | 32 + inst/doc/intro_labelled.html | 266 ++++++++------- inst/doc/look_for.html | 647 ++++++++++++++++++++----------------- inst/doc/missing_values.R | 2 inst/doc/missing_values.Rmd | 2 inst/doc/missing_values.html | 113 +++--- man/copy_labels.Rd | 116 +++--- man/drop_unused_value_labels.Rd | 38 +- man/look_for.Rd | 71 ++-- man/na_values.Rd | 54 +-- man/recode.haven_labelled.Rd | 213 ++++++------ man/recode_if.Rd | 5 man/remove_attributes.Rd | 53 +-- man/remove_labels.Rd | 23 - man/sort_val_labels.Rd | 52 +- man/tagged_na_to_user_na.Rd | 4 man/to_character.Rd | 11 man/to_factor.Rd | 50 +- man/to_labelled.Rd | 43 +- man/update_labelled.Rd | 84 ++-- man/val_labels.Rd | 37 +- man/var_label.Rd | 31 + tests/spelling.R | 9 tests/testthat/test-copy_labels.r | 7 tests/testthat/test-labelled.r | 416 +++++++++++++++++++---- tests/testthat/test-miscellanous.R | 8 tests/testthat/test-na_values.R | 81 +++- tests/testthat/test-recode_if.r | 3 tests/testthat/test-tagged_na.r | 16 tests/testthat/test-to_labelled.r | 95 +++-- tests/testthat/test_lookfor.R | 39 +- vignettes/intro_labelled.Rmd | 32 + vignettes/missing_values.Rmd | 2 58 files changed, 2414 insertions(+), 1356 deletions(-)
Title: R6 Based Utilities for 3D Meshes using 'CGAL'
Description: Provides some utilities for 3D meshes: clipping of a mesh to
the volume bounded by another mesh, decomposition into convex parts,
distance between a mesh and a point, triangulation, geodesic distance,
Boolean operations (intersection, union, difference), connected
components, volume, area, and centroid. Also provides an algorithm for
surface reconstruction from a cloud of points. Meshes are represented
by R6 classes. All algorithms are performed by the 'C++' library
'CGAL' (<https://www.cgal.org/>).
Author: Stephane Laurent [aut, cre]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between cgalMeshes versions 1.0.0 dated 2022-11-09 and 2.0.0 dated 2023-04-11
DESCRIPTION | 15 MD5 | 75 - NAMESPACE | 16 NEWS.md | 30 R/AFSreconstruction.R | 41 R/Edges.R | 35 R/RcppExports.R | 20 R/SSSreconstruction.R |only R/aaa.R | 4 R/cgalMesh.R | 1009 ++++++++++++++++- R/data-SolidMobiusStrip.R |only R/data-tetrahedraCompound.R |only R/gyroTriangle.R |only R/internal.R | 68 + R/parametricMesh.R |only R/revolutionMesh.R |only R/someMeshes.R | 90 + R/sphericalTriangle.R |only README.md | 82 + data/SolidMobiusStrip.rda |only data/pentagrammicPrism.rda |binary data/tetrahedraCompound.rda |only inst/extdata/pentagrammicDipyramid.ply |only inst/extdata/teapot.nii.gz |only man/AFSreconstruction.Rd | 33 man/SSSreconstruction.Rd |only man/SolidMobiusStrip.Rd |only man/cgalMesh.Rd | 1704 +++++++++++++++++++++++++++-- man/exteriorEdges.Rd | 4 man/gyroTriangle.Rd |only man/isoCuboidMesh.Rd |only man/parametricMesh.Rd |only man/plotEdges.Rd | 10 man/revolutionMesh.Rd |only man/sphericalTriangle.Rd |only man/tetrahedraCompound.Rd |only man/torusMesh.Rd | 38 src/AFSreconstruction.cpp | 22 src/MODULE.cpp | 44 src/MODULE.h | 1912 +++++++++++++++++++++++++++++++-- src/RcppExports.cpp | 75 + src/ReadWrite.cpp | 91 + src/SSSreconstruction.cpp |only src/cgalMesh.h | 347 +++++ src/gyro.cpp |only src/meshTopology.cpp |only src/sphericalTriangle.cpp |only src/unexported.cpp | 366 ++++++ src/unexported1.cpp | 6 src/unexported2.cpp | 67 - 50 files changed, 5800 insertions(+), 404 deletions(-)
Title: Penalized Quantile Regression
Description: Performs penalized quantile regression with LASSO, elastic net, SCAD and MCP penalty functions including group penalties. Provides a function that automatically generates lambdas and evaluates different models with cross validation or BIC, including a large p version of BIC. Below URL provides a link to a work in progress vignette.
Author: Ben Sherwood [aut, cre], Adam Maidman [ctb], Shaobo Li [ctb]
Maintainer: Ben Sherwood <ben.sherwood@ku.edu>
Diff between rqPen versions 3.1.2 dated 2023-03-28 and 3.1.3 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS | 4 ++++ R/mainFunctions.R | 13 +++++++++++-- R/workHorse.R | 2 +- build/partial.rdb |binary 6 files changed, 25 insertions(+), 12 deletions(-)
Title: Tidy Tuning Tools
Description: The ability to tune models is important. 'tune' contains
functions and classes to be used in conjunction with other
'tidymodels' packages for finding reasonable values of
hyper-parameters in models, pre-processing methods, and
post-processing steps.
Author: Max Kuhn [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tune versions 1.1.0 dated 2023-04-04 and 1.1.1 dated 2023-04-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 5 +++++ R/collect.R | 18 ++++++++++++++---- tests/testthat/test-collect.R | 5 +++++ 5 files changed, 31 insertions(+), 11 deletions(-)
Title: "Eating the Liver of Data Science"
Description: Provides a collection of helper functions that make various techniques from data science more user-friendly for non-experts. In this way, our aim is to allow non-experts to become familiar with the techniques with only a minimal level of coding knowledge. Indeed, following an ancient Persian idiom, we refer to this as "eating the liver of data science" which could be interpreted as "getting intimately close with data science". Examples of procedures we include are: data partitioning for out-of-sample testing, computing Mean Squared Error (MSE) for quantifying prediction accuracy, and data transformation (z-score and min-max). Besides such helper functions, the package also includes several interesting datasets that are useful for multivariate analysis.
Author: Reza Mohammadi [aut, cre] ,
Kevin Burke [aut]
Maintainer: Reza Mohammadi <a.mohammadi@uva.nl>
Diff between liver versions 1.13 dated 2022-08-07 and 1.14 dated 2023-04-11
DESCRIPTION | 6 +++--- MD5 | 40 ++++++++++++++++++++-------------------- R/kNN.plot.R | 10 ++++++---- build/vignette.rds |binary data/adult.RData |binary data/advertising.RData |binary data/bank.RData |binary data/cereal.RData |binary data/churn.RData |binary data/churnCredit.RData |binary data/churnTel.RData |binary data/corona.RData |binary data/fertilizer.RData |binary data/house.RData |binary data/housePrice.RData |binary data/insurance.RData |binary data/marketing.RData |binary data/risk.RData |binary inst/doc/liver-example.Rmd | 2 +- inst/doc/liver-example.html | 23 +++++++++++++++++------ vignettes/liver-example.Rmd | 2 +- 21 files changed, 48 insertions(+), 35 deletions(-)
Title: Collective Matrix Factorization for Recommender Systems
Description: Collective matrix factorization (a.k.a. multi-view or multi-way factorization,
Singh, Gordon, (2008) <doi:10.1145/1401890.1401969>) tries to approximate a (potentially very sparse
or having many missing values) matrix 'X' as the product of two low-dimensional matrices,
optionally aided with secondary information matrices about rows and/or columns of 'X',
which are also factorized using the same latent components.
The intended usage is for recommender systems, dimensionality reduction, and missing value imputation.
Implements extensions of the original model (Cortes, (2018) <arXiv:1809.00366>) and can produce
different factorizations such as the weighted 'implicit-feedback' model (Hu, Koren, Volinsky,
(2008) <doi:10.1109/ICDM.2008.22>), the 'weighted-lambda-regularization' model,
(Zhou, Wilkinson, Schreiber, Pan, (2008) <doi:10.1007/978-3-540-68880-8_32>),
or the enhanced model with 'implicit features' (Rendle, Zhang,
Koren, (2019) <arXiv:1905.01395>), with [...truncated...]
Author: David Cortes [aut, cre, cph],
Jorge Nocedal [cph] ,
Naoaki Okazaki [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between cmfrec versions 3.5.1 dated 2023-03-08 and 3.5.1-1 dated 2023-04-11
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 14 +++++++------- R/fit.R | 17 +++++++++++++---- R/helpers.R | 13 +++++++++++-- src/Makevars | 2 +- src/cmfrec.h | 3 --- src/offsets.c | 10 +++------- 8 files changed, 40 insertions(+), 29 deletions(-)
Title: Spatial Analysis on Network
Description: Perform spatial analysis on network.
Implement several methods for spatial analysis on network: Network Kernel Density estimation,
building of spatial matrices based on network distance ('listw' objects from 'spdep' package), K functions estimation
for point pattern analysis on network, k nearest neighbours on network, reachable area calculation, and graph generation
References: Okabe et al (2019) <doi:10.1080/13658810802475491>;
Okabe et al (2012, ISBN:978-0470770818);Baddeley et al (2015, ISBN:9781482210200).
Author: Jeremy Gelb [aut, cre] ,
Philippe Apparicio [ctb]
Maintainer: Jeremy Gelb <jeremy.gelb@ucs.inrs.ca>
Diff between spNetwork versions 0.4.3.6 dated 2022-11-11 and 0.4.3.7 dated 2023-04-11
DESCRIPTION | 9 - MD5 | 62 ++++---- NEWS.md | 12 + R/border_correction_sf.R | 6 R/neighbouring_sf.R | 13 + R/temporal_nkde_sf.R | 14 + README.md | 92 ++++++------ build/partial.rdb |binary build/vignette.rds |binary data/bike_accidents.rda |binary data/main_network_mtl.rda |binary data/mtl_libraries.rda |binary data/mtl_network.rda |binary data/mtl_theatres.rda |binary data/small_mtl_network.rda |binary inst/CITATION | 10 - inst/doc/Isochrones.html | 128 +++++++++-------- inst/doc/KNetworkFunctions.html | 158 +++++++++++---------- inst/doc/NKDE.html | 174 ++++++++++++------------ inst/doc/NetworkBuilding.html | 148 ++++++++++---------- inst/doc/SpatialWeightMatrices.html | 133 +++++++++--------- inst/doc/TNKDE.html | 143 ++++++++++--------- inst/extdata/results_vignette_kfunc.rda |binary inst/extdata/results_vignette_network_build.rda |binary inst/extdata/results_vignette_nkde.rda |binary inst/extdata/results_vignette_tnkde.rda |binary inst/extdata/results_vignette_wmat.rda |binary man/figures/unnamed-chunk-8-1.png |binary man/spNetwork-package.Rd | 2 src/Makevars.win | 2 tests/testthat/test_border_correction_sf.R | 95 +++++++++++++ vignettes/images/animated_map.gif |binary 32 files changed, 682 insertions(+), 519 deletions(-)
Title: An R Package for Fitting Separable Nonlinear Models
Description: Set of functions implementing the algorithm described in Fernandez
Torvisco et al. (2018) for fitting separable nonlinear regression curves.
See Fernandez Torvisco, Rodriguez-Arias Fernandez and Cabello Sanchez (2018)
<doi:10.2298/FIL1812233T>.
Author: Mariano Rodriguez-Arias <arias@unex.es>, Juan Antonio Fernandez <jfernandck@alumnos.unex.es>, Javier Cabello <coco@unex.es>, Rafael Benitez <rabesua@uv.es>
Maintainer: Rafael Benitez <rabesua@uv.es>
Diff between nlstac versions 0.1.0 dated 2020-10-29 and 0.2.0 dated 2023-04-11
nlstac-0.1.0/nlstac/R/is.tac.R |only nlstac-0.2.0/nlstac/DESCRIPTION | 13 nlstac-0.2.0/nlstac/MD5 | 47 +- nlstac-0.2.0/nlstac/NAMESPACE | 17 nlstac-0.2.0/nlstac/R/deviance.nlstac.R |only nlstac-0.2.0/nlstac/R/df.residual.R |only nlstac-0.2.0/nlstac/R/fitted.nlstac.R |only nlstac-0.2.0/nlstac/R/get_best_params.R | 344 +++++++++--------- nlstac-0.2.0/nlstac/R/get_functions.R | 157 ++++---- nlstac-0.2.0/nlstac/R/get_lhs.R | 43 +- nlstac-0.2.0/nlstac/R/get_parameters.R | 59 +-- nlstac-0.2.0/nlstac/R/get_rhs.R | 41 +- nlstac-0.2.0/nlstac/R/logLik.nlstac.R |only nlstac-0.2.0/nlstac/R/nls_tac.R | 486 +++++++++++++------------- nlstac-0.2.0/nlstac/R/nobs.nlstac.R |only nlstac-0.2.0/nlstac/R/predict.nlstac.R | 2 nlstac-0.2.0/nlstac/R/print.nlstac.R |only nlstac-0.2.0/nlstac/R/print.summary.nlstac.R | 83 +--- nlstac-0.2.0/nlstac/R/residuals.nlstac.R |only nlstac-0.2.0/nlstac/R/summary.nlstac.R | 2 nlstac-0.2.0/nlstac/R/vcov.nlstac.R |only nlstac-0.2.0/nlstac/man/deviance.nlstac.Rd |only nlstac-0.2.0/nlstac/man/df.residual.nlstac.Rd |only nlstac-0.2.0/nlstac/man/fitted.nlstac.Rd |only nlstac-0.2.0/nlstac/man/get_best_params.Rd | 4 nlstac-0.2.0/nlstac/man/is.nlstac.Rd | 9 nlstac-0.2.0/nlstac/man/logLik.nlstac.Rd |only nlstac-0.2.0/nlstac/man/nls_tac.Rd | 9 nlstac-0.2.0/nlstac/man/nobs.nlstac.Rd |only nlstac-0.2.0/nlstac/man/print.nlstac.Rd |only nlstac-0.2.0/nlstac/man/residuals.nlstac.Rd |only nlstac-0.2.0/nlstac/man/vcov.nlstac.Rd |only nlstac-0.2.0/nlstac/tests |only 33 files changed, 654 insertions(+), 662 deletions(-)
Title: Optimum Threshold Estimation
Description: Functions that provide point and interval estimations of optimum thresholds for continuous diagnostic tests. The methodology used is based on minimizing an overall cost function in the two- and three-state settings. We also provide functions for sample size determination and estimation of diagnostic accuracy measures. We also include graphical tools. The statistical methodology used here can be found in Perez-Jaume et al (2017) <doi:10.18637/jss.v082.i04> and in Skaltsa et al (2010, 2012) <doi:10.1002/bimj.200900294>, <doi:10.1002/sim.4369>.
Author: Sara Perez-Jaume [aut, cre],
Natalia Pallares [aut],
Konstantina Skaltsa [aut]
Maintainer: Sara Perez-Jaume <spjaume@gmail.com>
Diff between ThresholdROC versions 2.9.0 dated 2021-07-30 and 2.9.1 dated 2023-04-11
DESCRIPTION | 19 ++- MD5 | 12 +- NAMESPACE | 2 R/ThresholdROC-2states.R | 218 ++++++++++++++++++++++++-------------------- R/ThresholdROC-3states.R | 2 man/ThresholdROC-package.Rd | 7 - man/plotCostROC.Rd | 7 + 7 files changed, 146 insertions(+), 121 deletions(-)
Title: MultiDimensional Feature Selection
Description: Functions for MultiDimensional Feature Selection (MDFS):
calculating multidimensional information gains, scoring variables,
finding important variables, plotting selection results.
This package includes an optional CUDA implementation that speeds up
information gain calculation using NVIDIA GPGPUs.
R. Piliszek et al. (2019) <doi:10.32614/RJ-2019-019>.
Author: Radoslaw Piliszek [aut, cre],
Krzysztof Mnich [aut],
Pawel Tabaszewski [aut],
Szymon Migacz [aut],
Andrzej Sulecki [aut],
Witold Remigiusz Rudnicki [aut]
Maintainer: Radoslaw Piliszek <r.piliszek@uwb.edu.pl>
Diff between MDFS versions 1.5.0 dated 2023-03-14 and 1.5.1 dated 2023-04-11
DESCRIPTION | 8 MD5 | 48 - NEWS | 10 R/information_gain.R | 6 R/main.R | 27 cleanup.win | 10 man/ComputeMaxInfoGains.Rd | 2 man/ComputePValue.Rd | 160 ++--- man/MDFS.Rd | 2 man/RelevantVariables.MDFS.Rd | 54 - man/RelevantVariables.Rd | 38 - man/as.data.frame.MDFS.Rd | 38 - man/madelon.Rd | 68 +- man/plot.MDFS.Rd | 36 - src/MDFS-win.def | 6 src/Makevars.cuda.in | 2 src/gpu/kernels.cu | 214 +++--- src/gpu/kernels2D.cuh | 1302 +++++++++++++++++++++--------------------- src/gpu/kernels3D.cuh | 1176 ++++++++++++++++++------------------- src/gpu/kernels4D.cuh | 1204 +++++++++++++++++++------------------- src/gpu/kernels5D.cuh | 1298 ++++++++++++++++++++--------------------- src/gpu/splitkernel.cuh | 926 ++++++++++++++--------------- src/gpu/tableskernel.cuh | 340 +++++----- src/gpu/utils.cuh | 28 tests/simple_run.R | 10 25 files changed, 3521 insertions(+), 3492 deletions(-)
Title: Formula Interface to the Grammar of Graphics
Description: Provides a formula interface to 'ggplot2' graphics.
Author: Daniel Kaplan [aut],
Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@calvin.edu>
Diff between ggformula versions 0.10.2 dated 2022-08-31 and 0.10.4 dated 2023-04-11
DESCRIPTION | 11 - MD5 | 263 +++++++++++++++++++++++++++-------- NEWS.md | 7 R/gf_aux.R | 2 R/gf_dist.R | 2 R/gf_functions.R | 266 ++++++++++++++++++++++++++---------- R/ggridges.R | 24 ++- R/ggstance.R | 53 +++---- R/newplots.R | 2 R/reexports.R | 13 + R/relabel.R | 35 ---- R/vdiffr.R | 5 inst/doc/ggformula.html | 161 ++++++++++----------- man/geom_lm.Rd | 14 + man/gf_area.Rd | 20 +- man/gf_ash.Rd | 4 man/gf_aux.Rd | 2 man/gf_bar.Rd | 24 +-- man/gf_barh.Rd | 4 man/gf_bin2d.Rd | 4 man/gf_boxplot.Rd | 10 - man/gf_boxploth.Rd | 4 man/gf_col.Rd | 4 man/gf_contour.Rd | 34 ++-- man/gf_crossbar.Rd | 18 +- man/gf_curve.Rd | 18 +- man/gf_density.Rd | 14 + man/gf_density_2d.Rd | 16 +- man/gf_dist.Rd | 2 man/gf_ecdf.Rd | 14 + man/gf_errorbar.Rd | 20 +- man/gf_errorbarh.Rd | 16 +- man/gf_fitdistr.Rd | 12 + man/gf_freqpoly.Rd | 12 - man/gf_hex.Rd | 14 + man/gf_histogram.Rd | 18 +- man/gf_line.Rd | 6 man/gf_linerange.Rd | 63 +++++--- man/gf_lines.Rd | 10 - man/gf_polygon.Rd | 18 +- man/gf_qq.Rd | 6 man/gf_quantile.Rd | 14 - man/gf_raster.Rd | 4 man/gf_rect.Rd | 4 man/gf_ribbon.Rd | 18 +- man/gf_rug.Rd | 24 +-- man/gf_segment.Rd | 18 +- man/gf_sf.Rd | 4 man/gf_sina.Rd | 14 + man/gf_smooth.Rd | 5 man/gf_spline.Rd | 4 man/gf_spoke.Rd | 16 +- man/gf_step.Rd | 16 +- man/gf_text.Rd | 4 man/gf_tile.Rd | 4 man/gf_violin.Rd | 12 - man/ggridges.Rd | 32 ++-- man/labels.Rd | 47 ------ man/reexports.Rd | 5 tests/testthat/_snaps |only tests/testthat/test-layer-factory.R | 57 +++++-- 61 files changed, 971 insertions(+), 576 deletions(-)
Title: Cyclic Coordinate Descent for Logistic, Poisson and Survival
Analysis
Description: This model fitting tool incorporates cyclic coordinate descent and
majorization-minimization approaches to fit a variety of regression models
found in large-scale observational healthcare data. Implementations focus
on computational optimization and fine-scale parallelization to yield
efficient inference in massive datasets. Please see:
Suchard, Simpson, Zorych, Ryan and Madigan (2013) <doi:10.1145/2414416.2414791>.
Author: Marc A. Suchard [aut, cre],
Martijn J. Schuemie [aut],
Trevor R. Shaddox [aut],
Yuxi Tian [aut],
Jianxiao Yang [aut],
Eric Kawaguchi [aut],
Sushil Mittal [ctb],
Observational Health Data Sciences and Informatics [cph],
Marcus Geelnard [cph, ctb] ,
Ru [...truncated...]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between Cyclops versions 3.3.0 dated 2023-04-05 and 3.3.1 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 9 +++++++++ man/convertToCyclopsData.Rd | 6 +++--- src/RcppCyclopsInterface.cpp | 6 +++--- src/RcppModelData.cpp | 2 +- src/cyclops/CyclicCoordinateDescent.cpp | 4 ++++ src/cyclops/engine/ModelSpecifics.hpp | 4 ++-- tools/configure.R | 7 +++++-- 9 files changed, 39 insertions(+), 23 deletions(-)
Title: X-Engineering or Supporting Functions
Description: Miscellaneous functions used for x-engineering (feature engineering) or
for supporting in other packages maintained by 'Shichen Xie'.
Author: Shichen Xie [aut, cre]
Maintainer: Shichen Xie <xie@shichen.name>
Diff between xefun versions 0.1.3 dated 2022-12-24 and 0.1.4 dated 2023-04-11
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/date_funcs.R | 46 +++++++++++++++++++++++++++++++++------------- man/date_num.Rd | 25 +++++++++++++++++++++---- 5 files changed, 65 insertions(+), 24 deletions(-)
Title: Modeling Species Distributions in Three Dimensions
Description: Facilitates modeling species' ecological niches and
geographic distributions based on occurrences and environments that
have a vertical as well as horizontal component, and projecting models
into three-dimensional geographic space. Working in three dimensions is
useful in an aquatic context when the organisms one wishes to model can
be found across a wide range of depths in the water column. The package
also contains functions to automatically generate marine training
model training regions using machine learning, and interpolate and smooth
patchily sampled environmental rasters using thin plate splines.
Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) <doi:10.1038/ncomms11484>.
Nychka D, Furrer R, Paige J, Sain S (2021) <doi:10.5065/D6W957CT>.
Pateiro-Lopez B, Rodriguez-Casal A (2022) <https://CRAN.R-project.org/package=alphahull>.
Author: Hannah L. Owens [aut, cre] ,
Carsten Rahbek [aut]
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
Diff between voluModel versions 0.1.9 dated 2023-01-18 and 0.2.0 dated 2023-04-11
voluModel-0.1.9/voluModel/inst/extdata/PointsAndTrainingRegion.png |only voluModel-0.1.9/voluModel/inst/extdata/backgroundSamplingRegions.rds |only voluModel-0.1.9/voluModel/inst/extdata/oxygenBottom.RData |only voluModel-0.1.9/voluModel/inst/extdata/oxygenSmooth.RData |only voluModel-0.1.9/voluModel/inst/extdata/pointMap.png |only voluModel-0.1.9/voluModel/vignettes/pointMap.png |only voluModel-0.2.0/voluModel/DESCRIPTION | 13 voluModel-0.2.0/voluModel/MD5 | 136 +- voluModel-0.2.0/voluModel/NAMESPACE | 9 voluModel-0.2.0/voluModel/NEWS.md | 7 voluModel-0.2.0/voluModel/R/BackgroundSamplingFunctions.R | 28 voluModel-0.2.0/voluModel/R/inputProcessingUtilties.R | 132 +- voluModel-0.2.0/voluModel/R/interpolateRaster.R | 52 voluModel-0.2.0/voluModel/R/marineBackground.R | 4 voluModel-0.2.0/voluModel/R/modelDiagnostics.R | 57 - voluModel-0.2.0/voluModel/R/visualizations.R | 549 +++++----- voluModel-0.2.0/voluModel/R/xyzSample.R | 65 - voluModel-0.2.0/voluModel/inst/doc/a_Introduction.R | 167 +-- voluModel-0.2.0/voluModel/inst/doc/a_Introduction.Rmd | 169 +-- voluModel-0.2.0/voluModel/inst/doc/a_Introduction.html | 398 +++---- voluModel-0.2.0/voluModel/inst/doc/b_RasterProcessing.R | 150 -- voluModel-0.2.0/voluModel/inst/doc/b_RasterProcessing.Rmd | 154 -- voluModel-0.2.0/voluModel/inst/doc/b_RasterProcessing.html | 295 ++--- voluModel-0.2.0/voluModel/inst/doc/c_DataSampling.R | 64 - voluModel-0.2.0/voluModel/inst/doc/c_DataSampling.Rmd | 85 - voluModel-0.2.0/voluModel/inst/doc/c_DataSampling.html | 451 +++----- voluModel-0.2.0/voluModel/inst/doc/d_Visualization.R | 78 - voluModel-0.2.0/voluModel/inst/doc/d_Visualization.Rmd | 81 - voluModel-0.2.0/voluModel/inst/doc/d_Visualization.html | 238 ++-- voluModel-0.2.0/voluModel/inst/doc/e_GLMWorkflow.R | 62 - voluModel-0.2.0/voluModel/inst/doc/e_GLMWorkflow.Rmd | 75 - voluModel-0.2.0/voluModel/inst/doc/e_GLMWorkflow.html | 364 +++--- voluModel-0.2.0/voluModel/inst/extdata/backgroundSamplingRegions.cpg |only voluModel-0.2.0/voluModel/inst/extdata/backgroundSamplingRegions.dbf |only voluModel-0.2.0/voluModel/inst/extdata/backgroundSamplingRegions.prj |only voluModel-0.2.0/voluModel/inst/extdata/backgroundSamplingRegions.shp |only voluModel-0.2.0/voluModel/inst/extdata/backgroundSamplingRegions.shx |only voluModel-0.2.0/voluModel/inst/extdata/oxygenBottom.tif |only voluModel-0.2.0/voluModel/inst/extdata/oxygenSmooth.tif |only voluModel-0.2.0/voluModel/inst/extdata/woa18_all_A00mn01_cropped.zip |binary voluModel-0.2.0/voluModel/inst/extdata/woa18_decav_t00mn01_cropped.zip |binary voluModel-0.2.0/voluModel/man/MESS3D.Rd | 36 voluModel-0.2.0/voluModel/man/bottomRaster.Rd | 19 voluModel-0.2.0/voluModel/man/centerPointRasterTemplate.Rd |only voluModel-0.2.0/voluModel/man/columnParse.Rd | 8 voluModel-0.2.0/voluModel/man/diversityStack.Rd | 12 voluModel-0.2.0/voluModel/man/downsample.Rd | 10 voluModel-0.2.0/voluModel/man/interpolateRaster.Rd | 6 voluModel-0.2.0/voluModel/man/mSampling2D.Rd | 2 voluModel-0.2.0/voluModel/man/mSampling3D.Rd | 12 voluModel-0.2.0/voluModel/man/marineBackground.Rd | 4 voluModel-0.2.0/voluModel/man/oneRasterPlot.Rd | 40 voluModel-0.2.0/voluModel/man/plotLayers.Rd | 36 voluModel-0.2.0/voluModel/man/pointCompMap.Rd | 4 voluModel-0.2.0/voluModel/man/pointMap.Rd | 4 voluModel-0.2.0/voluModel/man/rasterComp.Rd | 25 voluModel-0.2.0/voluModel/man/smoothRaster.Rd | 8 voluModel-0.2.0/voluModel/man/testIntersection.Rd | 14 voluModel-0.2.0/voluModel/man/xyzSample.Rd | 38 voluModel-0.2.0/voluModel/tests/testthat/test-inputProcessingUtilties.R | 42 voluModel-0.2.0/voluModel/tests/testthat/test-interpolateRaster.R | 50 voluModel-0.2.0/voluModel/tests/testthat/test-modelDiagnostics.R | 24 voluModel-0.2.0/voluModel/tests/testthat/test-visualizations.R | 58 - voluModel-0.2.0/voluModel/tests/testthat/test-xyzSample.R | 14 voluModel-0.2.0/voluModel/vignettes/AOUInterpAndSmooth.png |binary voluModel-0.2.0/voluModel/vignettes/OxygenTopBottom.png |binary voluModel-0.2.0/voluModel/vignettes/PointsAndTrainingRegion.png |binary voluModel-0.2.0/voluModel/vignettes/TemperatureTopBottom.png |binary voluModel-0.2.0/voluModel/vignettes/a_Introduction.Rmd | 169 +-- voluModel-0.2.0/voluModel/vignettes/alphaHullDemonstration-1.png |binary voluModel-0.2.0/voluModel/vignettes/b_RasterProcessing.Rmd | 154 -- voluModel-0.2.0/voluModel/vignettes/c_DataSampling.Rmd | 85 - voluModel-0.2.0/voluModel/vignettes/clipToOceanDemo-1.png |binary voluModel-0.2.0/voluModel/vignettes/d_Visualization.Rmd | 81 - voluModel-0.2.0/voluModel/vignettes/e_GLMWorkflow.Rmd | 75 - voluModel-0.2.0/voluModel/vignettes/meridianWrapDemo-1.png |binary 76 files changed, 2407 insertions(+), 2506 deletions(-)
Title: Variable Importance and Variable Interaction Displays
Description: A suite of plots for displaying variable importance and two-way variable interaction jointly. Can also display partial dependence plots laid out in a pairs plot or 'zenplots' style.
Author: Alan Inglis [aut, cre],
Andrew Parnell [aut],
Catherine Hurley [aut]
Maintainer: Alan Inglis <alan.n.inglis@gmail.com>
Diff between vivid versions 0.2.6 dated 2023-04-05 and 0.2.7 dated 2023-04-11
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS.md | 13 -- R/vivi.R | 23 +++-- build/vignette.rds |binary inst/doc/vividVignette.R | 71 ++++++++++++---- inst/doc/vividVignette.Rmd | 113 +++++++++++++++++++------- inst/doc/vividVignette.html | 191 ++++++++++++++++++++++++++++++-------------- man/vivi.Rd | 21 +++- vignettes/vividVignette.Rmd | 113 +++++++++++++++++++------- 10 files changed, 404 insertions(+), 165 deletions(-)
Title: Access to the 'Geospatial Data Abstraction Library' ('GDAL')
Description: Provides low-level access to 'GDAL' functionality.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>. This package is focussed on providing exactly and only what GDAL does, to enable
developing further tools.
Author: Michael Sumner [aut, cre] ,
Simon Wotherspoon [ctb] ,
Mark Padgham [ctb] ),
Edzer Pebesma [ctb] ,
Roger Bivand [ctb] ,
Jim Hester [ctb, cph] ,
Timothy Keitt [ctb] ,
Jeroen Ooms [ctb] ,
Dale Maschette [ctb] ,
Joseph Stachelek [ctb],
Even Rouault [ctb] [...truncated...]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.9.3 dated 2023-01-06 and 0.9.5 dated 2023-04-11
DESCRIPTION | 18 + MD5 | 98 +++++----- NAMESPACE | 4 NEWS.md | 40 ++++ R/00_read_block.R | 6 R/00_utils.R | 5 R/00_warpgeneral.R |only R/RcppExports.R | 44 +++- R/index_input_geometry.R | 10 - R/raster-info.R | 21 +- R/raster-input.R | 15 - R/read_stream_internal.R |only R/utils.R | 11 - R/vapour-gdal-library.R | 24 ++ R/vapour_input_attributes.R | 9 R/vapour_input_geometry.R | 12 + R/vapour_vrt.R | 14 + R/vapour_vsi_list.R | 2 README.md | 153 ++++++--------- configure | 37 --- configure.ac | 34 --- inst/cmd |only inst/doc/vapour.html | 34 ++- inst/extdata/cutline_sst.gpkg |only inst/include/gdalapplib/gdalapplib.h | 35 +-- inst/include/gdalarrowstream |only inst/include/gdalgeometry/gdalgeometry.h | 21 ++ inst/include/gdallibrary/gdallibrary.h | 18 + inst/include/gdalraster/gdalraster.h | 280 ++++++++++++++++++++++++----- inst/include/gdalreadwrite/gdalreadwrite.h | 17 - inst/include/gdalwarpgeneral |only inst/include/gdalwarpmem/gdalwarpmem.h | 56 ++--- man/figures/README-lod-1.png |binary man/gdal_raster_data.Rd |only man/vapour_crs_is_lonlat.Rd |only man/vapour_raster_info.Rd | 2 man/vapour_read_raster.Rd | 5 man/vapour_read_raster_block.Rd | 5 man/vapour_vrt.Rd | 10 - man/vapour_vsi_list.Rd | 2 man/vapour_warp_raster.Rd | 8 src/000-stream.cpp |only src/000-warpgeneral.cpp |only src/00_gdal.cpp | 6 src/00_raster.cpp | 10 - src/00_raster_block_io.cpp | 166 ++++++++++++++++- src/00_vrt.cpp | 4 src/Makevars.in | 4 src/Makevars.ucrt | 6 src/Makevars.win | 2 src/RcppExports.cpp | 152 ++++++++++++++- tests/testthat.R | 2 tests/testthat/test-crs-less-warp.R | 19 + tests/testthat/test-features.R | 2 tests/testthat/test-rasterio-resampling.R | 11 - 55 files changed, 1020 insertions(+), 414 deletions(-)
Title: Plot Null Hypothesis Significance Tests
Description: Illustrate graphically the most common Null Hypothesis Significance Testing procedures. More specifically, this package provides functions to plot Chi-Squared, F, t (one- and two-tailed) and z (one- and two-tailed) tests, by plotting the probability density under the null hypothesis as a function of the different test statistic values. Although highly flexible (color theme, fonts, etc.), only the minimal number of arguments (observed test statistic, degrees of freedom) are necessary for a clear and useful graph to be plotted, with the observed test statistic and the p value, as well as their corresponding value labels. The axes are automatically scaled to present the relevant part and the overall shape of the probability density function. This package is especially intended for education purposes, as it provides a helpful support to help explain the Null Hypothesis Significance Testing process, its use and/or shortcomings.
Author: Nils Myszkowski [aut, cre]
Maintainer: Nils Myszkowski <nilsmyszkowskiscience@gmail.com>
Diff between nhstplot versions 1.1.0 dated 2020-04-14 and 1.2.0 dated 2023-04-11
DESCRIPTION | 13 - MD5 | 26 +-- NEWS.md | 6 R/plot.chisqtest.R | 25 ++ R/plot.ftest.R | 92 ++++++----- R/plot.ttest.R | 12 - R/plot.ztest.R | 14 - build/vignette.rds |binary inst/doc/nhstplot.R | 16 + inst/doc/nhstplot.Rmd | 23 ++ inst/doc/nhstplot.html | 409 +++++++++++++++++++++++++++++-------------------- man/plotchisqtest.Rd | 8 man/plotftest.Rd | 9 + vignettes/nhstplot.Rmd | 23 ++ 14 files changed, 442 insertions(+), 234 deletions(-)
Title: Gadget is the Globally-Applicable Area Disaggregated General
Ecosystem Toolbox
Description: A statistical ecosystem modelling package, taking many features of
the ecosystem into account. Gadget works by running an internal
model based on many parameters, and then comparing the data from
the output of this model to real data to get a goodness-of-fit
likelihood score. These parameters can then be adjusted, and the
model re-run, until an optimum is found, which corresponds to the
model with the lowest likelihood score. Gadget allows the user to
include a number of features into an ecosystem model: One or more
species, each of which may be split into multiple stocks; multiple
areas with migration between areas; predation between and within
species; maturation; reproduction and recruitment; multiple
commercial and survey fleets taking catches from the populations.
For more details see <https://gadget-framework.github.io/gadget2/>.
This is the C++ Gadget2 runtime, making it available for R.
Author: Bjarki Thor Elvarsson [aut, cre],
James Begley [aut],
Hoskuldur Bjornsson [aut],
Jamie Lentin [ctb],
Gunnar Stefansson [ctb],
Lorna Taylor [ctb],
Daniel Howell [ctb],
Sigurdur Hannesson [ctb],
Narfi Stefansson [aut],
Hersir Sigurgeirsson [ctb],
Morte [...truncated...]
Maintainer: Bjarki Thor Elvarsson <bjarki.elvarsson@hafogvatn.is>
Diff between gadget2 versions 2.3.9 dated 2022-11-02 and 2.3.10 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- src/stock.cc | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Model Selection of PERMANOVA Models Using AICc
Description: Provides tools for model selection and model averaging of PerMANOVA
models using Akaike Information Criterion corrected for small sample sizes
(AICc) and Information Theoretic criteria principles. The package is built
around the PERMANOVA analysis from the 'vegan' package and provides a
streamlined workflow for generating and comparing models, obtaining model
weights, and summarizing results using model averaging approaches. The
methods implemented in this package are based on the practical information-
theoretic approach described by Burnham, K. P. and Anderson, D. R. (2002)
(<doi:10.1007/b97636>).
Author: Derek Corcoran [aut, cre]
Maintainer: Derek Corcoran <derek.corcoran.barrios@gmail.com>
Diff between AICcPermanova versions 0.0.1 dated 2023-04-05 and 0.0.2 dated 2023-04-11
DESCRIPTION | 11 +++++++---- MD5 | 21 +++++++++++++++++---- NAMESPACE | 11 +++++++++++ R/AICc_permanova2.R | 4 ---- R/akaike_adjusted_rsq.R |only R/filter_vif.R |only R/fit_models.R | 13 +++++++++---- R/select_models.R |only man/akaike_adjusted_rsq.Rd |only man/filter_vif.Rd |only man/select_models.Rd |only tests |only 12 files changed, 44 insertions(+), 16 deletions(-)
Title: Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Description: Validation of risk predictions obtained from survival models and
competing risk models based on censored data using inverse weighting and
cross-validation. Most of the 'pec' functionality has been moved to 'riskRegression'.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between pec versions 2022.05.04 dated 2022-05-04 and 2023.04.12 dated 2023-04-11
pec-2022.05.04/pec/R/predictEventProb.selectFGR.R |only pec-2022.05.04/pec/man/selectFGR.Rd |only pec-2023.04.12/pec/DESCRIPTION | 10 ++--- pec-2023.04.12/pec/MD5 | 38 +++++++++----------- pec-2023.04.12/pec/NAMESPACE | 2 - pec-2023.04.12/pec/R/R2.R | 2 - pec-2023.04.12/pec/R/ipcw.R | 1 pec-2023.04.12/pec/R/pec.R | 9 ++-- pec-2023.04.12/pec/R/plotPredictEventProb.R | 13 +++++- pec-2023.04.12/pec/R/plotPredictSurvProb.R | 3 + pec-2023.04.12/pec/R/predictEventProb.coxboost.R | 2 - pec-2023.04.12/pec/R/predictRestrictedMeanTime.R | 1 pec-2023.04.12/pec/R/predictSurvProb.R | 3 + pec-2023.04.12/pec/inst/CITATION | 25 ++++--------- pec-2023.04.12/pec/man/R2.Rd | 2 - pec-2023.04.12/pec/man/ipcw.Rd | 1 pec-2023.04.12/pec/man/pec.Rd | 9 ++-- pec-2023.04.12/pec/man/plotPredictEventProb.Rd | 9 ++++ pec-2023.04.12/pec/man/plotPredictSurvProb.Rd | 3 + pec-2023.04.12/pec/man/predictRestrictedMeanTime.Rd | 1 pec-2023.04.12/pec/man/predictSurvProb.Rd | 1 21 files changed, 73 insertions(+), 62 deletions(-)
Title: Owen Q-Function
Description: Evaluates the Owen Q-function for an integer value of the
degrees of freedom, by applying Owen's algorithm (1965)
<doi:10.1093/biomet/52.3-4.437>. It is useful for the calculation of
the power of equivalence tests.
Author: Stephane Laurent
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between OwenQ versions 1.0.6 dated 2023-01-27 and 1.0.7 dated 2023-04-11
DESCRIPTION | 6 MD5 | 14 NEWS.md | 4 build/vignette.rds |binary inst/doc/OwenQ.html | 8 inst/doc/Validation.html | 4 tests/testthat/test-pOwen_algo1.R | 819 +++++++++++++++++++------------------- tests/testthat/test-pOwen_algo2.R | 819 +++++++++++++++++++------------------- 8 files changed, 840 insertions(+), 834 deletions(-)
Title: Tracking Geo Code Change of Regional Granularity in Norway
Description: Regional granularity levels in Norway which are depicted by different codes,
have undergone several changes over the years.
Identifying when codes have changed and how many changes have taken place
can be troublesome. This package will help to identify these changes and when the changes
have taken place. One of the limitation of this package is that it is heavily depending
on the codes available from SSB website <https://data.ssb.no/api/klass/v1/api-guide.html>.
Author: Yusman Kamaleri [aut, cre]
Maintainer: Yusman Kamaleri <ybkamaleri@gmail.com>
Diff between norgeo versions 2.1.4 dated 2022-12-21 and 2.1.5 dated 2023-04-11
norgeo-2.1.4/norgeo/inst/test-data/cast_2020.rds |only norgeo-2.1.4/norgeo/inst/test-data/merge_2018_2020.rds |only norgeo-2.1.4/norgeo/inst/test-data/trackChangeFylke_2018_2020.rds |only norgeo-2.1.4/norgeo/inst/test-data/trackChangeKomm_2017_2020.rds |only norgeo-2.1.5/norgeo/DESCRIPTION | 8 norgeo-2.1.5/norgeo/MD5 | 74 - norgeo-2.1.5/norgeo/NEWS.md | 4 norgeo-2.1.5/norgeo/R/cast-geo.R | 7 norgeo-2.1.5/norgeo/R/get-change.R | 44 norgeo-2.1.5/norgeo/R/get-code.R | 9 norgeo-2.1.5/norgeo/R/get-correspond.R | 9 norgeo-2.1.5/norgeo/R/track-change.R | 11 norgeo-2.1.5/norgeo/R/track-merge.R | 8 norgeo-2.1.5/norgeo/R/track-split.R | 8 norgeo-2.1.5/norgeo/R/zzz.R | 4 norgeo-2.1.5/norgeo/README.md | 8 norgeo-2.1.5/norgeo/build/vignette.rds |binary norgeo-2.1.5/norgeo/inst/doc/use-api.html | 12 norgeo-2.1.5/norgeo/inst/test-data/cast_2010.rds |only norgeo-2.1.5/norgeo/inst/test-data/change-dt.rds |binary norgeo-2.1.5/norgeo/inst/test-data/codes-fromto.rds |binary norgeo-2.1.5/norgeo/inst/test-data/dtCorres.rds |binary norgeo-2.1.5/norgeo/inst/test-data/merge_2016_2018.rds |only norgeo-2.1.5/norgeo/inst/test-data/split_2018_2020.rds |binary norgeo-2.1.5/norgeo/inst/test-data/trackChangeFylke_2017_2018.rds |only norgeo-2.1.5/norgeo/inst/test-data/trackChangeKomm_2010_2015.rds |only norgeo-2.1.5/norgeo/man/cast_geo.Rd | 52 - norgeo-2.1.5/norgeo/man/get_change.Rd | 105 +- norgeo-2.1.5/norgeo/man/get_code.Rd | 75 - norgeo-2.1.5/norgeo/man/get_correspond.Rd | 89 - norgeo-2.1.5/norgeo/man/track_change.Rd | 81 - norgeo-2.1.5/norgeo/man/track_merge.Rd | 65 - norgeo-2.1.5/norgeo/man/track_split.Rd | 65 - norgeo-2.1.5/norgeo/tests/fixtures/change.yml | 40 norgeo-2.1.5/norgeo/tests/fixtures/codes-fromto.yml | 42 norgeo-2.1.5/norgeo/tests/fixtures/correspond.yml | 501 +++------- norgeo-2.1.5/norgeo/tests/testthat/setup-norgeo.R | 6 norgeo-2.1.5/norgeo/tests/testthat/test-cast-geo.R | 5 norgeo-2.1.5/norgeo/tests/testthat/test-get-change.R | 2 norgeo-2.1.5/norgeo/tests/testthat/test-get-code.R | 2 norgeo-2.1.5/norgeo/tests/testthat/test-get-correspond.R | 2 norgeo-2.1.5/norgeo/tests/testthat/test-track-change.R | 14 42 files changed, 618 insertions(+), 734 deletions(-)
Title: Generic Implementation of a PK/PD Model
Description: A generic, easy-to-use and expandable implementation of a
pharmacokinetic (PK) / pharmacodynamic (PD) model based on the S4
class system. This package allows the user to read/write a
pharmacometric model from/to files and adapt it further on the fly in
the R environment. For this purpose, this package provides an
intuitive API to add, modify or delete equations, ordinary
differential equations (ODE's), model parameters or compartment
properties (like infusion duration or rate, bioavailability and
initial values). Finally, this package also provides a useful export
of the model for use with simulation packages 'rxode2' and 'mrgsolve'.
This package is designed and intended to be used with package
'campsis', a PK/PD simulation platform built on top of 'rxode2' and
'mrgsolve'.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsismod versions 0.9.0 dated 2022-06-17 and 1.0.0 dated 2023-04-11
DESCRIPTION | 14 +-- MD5 | 61 +++++++++------- NAMESPACE | 2 NEWS.md | 10 ++ R/campsis_model.R | 4 - R/code_records.R | 20 ++++- R/data.R | 4 - R/model_add_suffix.R |only R/mrgsolve_conversion.R | 8 +- R/mrgsolve_model.R | 5 - R/parameters.R | 17 ++++ R/utilities.R | 24 ++++++ build/vignette.rds |binary data/model_suite.rda |binary inst/doc/campsismod.html | 111 ++++++++++++++--------------- inst/doc/v01_model_creation.html | 115 +++++++++++++++---------------- inst/doc/v02_structural_model.html | 111 ++++++++++++++--------------- inst/doc/v03_model_adaptation.html | 111 ++++++++++++++--------------- inst/doc/v04_compartment_properties.html | 111 ++++++++++++++--------------- inst/doc/v05_parameters.html | 113 +++++++++++++++--------------- inst/doc/v06_append_pd_model.html | 111 ++++++++++++++--------------- man/addSuffix.Rd |only man/export.Rd | 6 + man/getRecordEquationNames.Rd |only man/model_library.Rd | 2 man/model_suite.Rd | 2 man/mrgsolveParam.Rd | 4 - man/read.model.Rd | 6 + man/variablePatternNoStartStr.Rd |only tests/testthat/custom/model_suffix_ab |only tests/testthat/testAddSuffix.R |only tests/testthat/testCampsisModel.R | 23 +++++- tests/testthat/testCodeRecords.R | 35 +++++++++ 33 files changed, 578 insertions(+), 452 deletions(-)
Title: Splitting Conic Solver
Description: Solves convex cone programs via operator splitting. Can solve:
linear programs ('LPs'), second-order cone programs ('SOCPs'), semidefinite programs
('SDPs'), exponential cone programs ('ECPs'), and power cone programs ('PCPs'), or
problems with any combination of those cones. 'SCS' uses 'AMD' (a set of routines for permuting sparse matrices prior to factorization) and 'LDL' (a sparse 'LDL' factorization and solve package) from 'SuiteSparse' (<https://people.engr.tamu.edu/davis/suitesparse.html>).
Author: Florian Schwendinger [aut, cre],
Brendan O'Donoghue [aut, cph],
Balasubramanian Narasimhan [aut],
Timothy A. Davis [cph],
Patrick R. Amestory [cph],
Iain S. Duff [cph]
Maintainer: Florian Schwendinger <FlorianSchwendinger@gmx.at>
Diff between scs versions 3.0-1 dated 2022-08-25 and 3.2.4 dated 2023-04-11
scs-3.0-1/scs/inst/check.R |only scs-3.0-1/scs/tests/testthat |only scs-3.0-1/scs/tests/testthat.R |only scs-3.2.4/scs/DESCRIPTION | 8 scs-3.2.4/scs/MD5 | 258 +- scs-3.2.4/scs/inst/CITATION | 19 scs-3.2.4/scs/inst/tinytest |only scs-3.2.4/scs/src/Makevars | 15 scs-3.2.4/scs/src/Makevars.win | 4 scs-3.2.4/scs/src/scs/CMakeLists.txt | 489 +++-- scs-3.2.4/scs/src/scs/Makefile | 77 scs-3.2.4/scs/src/scs/cmake/scs_types.h.in |only scs-3.2.4/scs/src/scs/docs/src/Doxyfile | 2 scs-3.2.4/scs/src/scs/docs/src/_static/css/scs_theme.css | 4 scs-3.2.4/scs/src/scs/docs/src/_static/scs_logo.png |binary scs-3.2.4/scs/src/scs/docs/src/_static/scs_logo_transparent.png |only scs-3.2.4/scs/src/scs/docs/src/algorithm/acceleration.rst | 10 scs-3.2.4/scs/src/scs/docs/src/algorithm/index.rst | 6 scs-3.2.4/scs/src/scs/docs/src/algorithm/scale.rst | 75 scs-3.2.4/scs/src/scs/docs/src/algorithm/warm_start.rst | 42 scs-3.2.4/scs/src/scs/docs/src/api/c.rst | 24 scs-3.2.4/scs/src/scs/docs/src/api/compile_flags.rst | 16 scs-3.2.4/scs/src/scs/docs/src/api/cones.rst | 15 scs-3.2.4/scs/src/scs/docs/src/api/exit_flags.rst | 3 scs-3.2.4/scs/src/scs/docs/src/api/index.rst | 3 scs-3.2.4/scs/src/scs/docs/src/api/info.rst | 3 scs-3.2.4/scs/src/scs/docs/src/api/matlab.rst | 15 scs-3.2.4/scs/src/scs/docs/src/api/python.rst | 58 scs-3.2.4/scs/src/scs/docs/src/api/r.rst | 51 scs-3.2.4/scs/src/scs/docs/src/api/ruby.rst |only scs-3.2.4/scs/src/scs/docs/src/api/settings.rst | 8 scs-3.2.4/scs/src/scs/docs/src/blas_lapack/index.rst | 2 scs-3.2.4/scs/src/scs/docs/src/citing/index.rst | 4 scs-3.2.4/scs/src/scs/docs/src/conf.py | 45 scs-3.2.4/scs/src/scs/docs/src/examples/c.rst | 26 scs-3.2.4/scs/src/scs/docs/src/examples/index.rst | 6 scs-3.2.4/scs/src/scs/docs/src/examples/matlab.rst | 18 scs-3.2.4/scs/src/scs/docs/src/examples/python |only scs-3.2.4/scs/src/scs/docs/src/examples/python.rst | 22 scs-3.2.4/scs/src/scs/docs/src/examples/qp.c |only scs-3.2.4/scs/src/scs/docs/src/examples/qp.c.out |only scs-3.2.4/scs/src/scs/docs/src/examples/qp.m |only scs-3.2.4/scs/src/scs/docs/src/examples/qp.m.out |only scs-3.2.4/scs/src/scs/docs/src/examples/qp.prob |only scs-3.2.4/scs/src/scs/docs/src/examples/r.rst | 109 + scs-3.2.4/scs/src/scs/docs/src/examples/ruby.rst |only scs-3.2.4/scs/src/scs/docs/src/index.rst | 22 scs-3.2.4/scs/src/scs/docs/src/install/c.rst | 60 scs-3.2.4/scs/src/scs/docs/src/install/index.rst | 3 scs-3.2.4/scs/src/scs/docs/src/install/python.rst | 10 scs-3.2.4/scs/src/scs/docs/src/install/r.rst | 8 scs-3.2.4/scs/src/scs/docs/src/install/ruby.rst |only scs-3.2.4/scs/src/scs/docs/src/linear_solver/index.rst | 52 scs-3.2.4/scs/src/scs/include/aa.h | 2 scs-3.2.4/scs/src/scs/include/cones.h | 29 scs-3.2.4/scs/src/scs/include/glbopts.h | 126 - scs-3.2.4/scs/src/scs/include/linalg.h | 3 scs-3.2.4/scs/src/scs/include/linsys.h | 38 scs-3.2.4/scs/src/scs/include/normalize.h | 12 scs-3.2.4/scs/src/scs/include/rw.h | 6 scs-3.2.4/scs/src/scs/include/scs.h | 195 -- scs-3.2.4/scs/src/scs/include/scs_types.h |only scs-3.2.4/scs/src/scs/include/scs_work.h |only scs-3.2.4/scs/src/scs/include/util.h | 6 scs-3.2.4/scs/src/scs/linsys/cpu/direct/private.c | 225 -- scs-3.2.4/scs/src/scs/linsys/cpu/direct/private.h | 16 scs-3.2.4/scs/src/scs/linsys/cpu/indirect/private.c | 102 - scs-3.2.4/scs/src/scs/linsys/cpu/indirect/private.h | 9 scs-3.2.4/scs/src/scs/linsys/csparse.c | 158 + scs-3.2.4/scs/src/scs/linsys/csparse.h | 27 scs-3.2.4/scs/src/scs/linsys/external/amd/LICENSE.txt | 897 ---------- scs-3.2.4/scs/src/scs/linsys/external/amd/SuiteSparse_config.c | 16 scs-3.2.4/scs/src/scs/linsys/external/amd/SuiteSparse_config.h | 2 scs-3.2.4/scs/src/scs/linsys/external/amd/amd_order.c | 10 scs-3.2.4/scs/src/scs/linsys/mkl |only scs-3.2.4/scs/src/scs/linsys/scs_matrix.c | 175 - scs-3.2.4/scs/src/scs/linsys/scs_matrix.h | 9 scs-3.2.4/scs/src/scs/scs.mk | 71 scs-3.2.4/scs/src/scs/src/aa.c | 21 scs-3.2.4/scs/src/scs/src/cones.c | 457 ++--- scs-3.2.4/scs/src/scs/src/exp_cone.c |only scs-3.2.4/scs/src/scs/src/linalg.c | 25 scs-3.2.4/scs/src/scs/src/normalize.c | 103 - scs-3.2.4/scs/src/scs/src/rw.c | 231 +- scs-3.2.4/scs/src/scs/src/scs.c | 662 ++++--- scs-3.2.4/scs/src/scs/src/scs_version.c | 14 scs-3.2.4/scs/src/scs/src/util.c | 51 scs-3.2.4/scs/src/scs/test/minunit.h | 7 scs-3.2.4/scs/src/scs/test/problem_utils.h | 43 scs-3.2.4/scs/src/scs/test/problems/degenerate.h | 3 scs-3.2.4/scs/src/scs/test/problems/hs21_tiny_qp.h | 5 scs-3.2.4/scs/src/scs/test/problems/hs21_tiny_qp_rw.h | 19 scs-3.2.4/scs/src/scs/test/problems/infeasible_tiny_qp.h | 3 scs-3.2.4/scs/src/scs/test/problems/max_ent |only scs-3.2.4/scs/src/scs/test/problems/max_ent.h |only scs-3.2.4/scs/src/scs/test/problems/qafiro_tiny_qp.h | 5 scs-3.2.4/scs/src/scs/test/problems/random_prob.h | 41 scs-3.2.4/scs/src/scs/test/problems/rob_gauss_cov_est.h | 20 scs-3.2.4/scs/src/scs/test/problems/small_lp.h | 7 scs-3.2.4/scs/src/scs/test/problems/small_qp.h | 53 scs-3.2.4/scs/src/scs/test/problems/test_exp_cone.h |only scs-3.2.4/scs/src/scs/test/problems/test_prob_from_data_file.h |only scs-3.2.4/scs/src/scs/test/problems/test_validation.h | 7 scs-3.2.4/scs/src/scs/test/problems/unbounded_tiny_qp.h | 8 scs-3.2.4/scs/src/scs/test/random_socp_prob.c | 6 scs-3.2.4/scs/src/scs/test/run_from_file.c | 28 scs-3.2.4/scs/src/scs/test/run_tests.c | 40 scs-3.2.4/scs/src/scs_mods/README.md | 11 scs-3.2.4/scs/src/scs_mods/private.c |only scs-3.2.4/scs/src/scs_mods/rw.c | 231 +- scs-3.2.4/scs/src/scs_mods/scs.c |only scs-3.2.4/scs/src/scs_mods/scs.mk | 85 scs-3.2.4/scs/tests/tinytest.R |only 113 files changed, 2984 insertions(+), 2928 deletions(-)
Title: Gaussian Process Fitting
Description: Fits a Gaussian process model to data. Gaussian processes
are commonly used in computer experiments to fit an interpolating model.
The model is stored as an 'R6' object and can be easily updated with new
data. There are options to run in parallel, and 'Rcpp'
has been used to speed up calculations.
For more info about Gaussian process software, see Erickson et al. (2018)
<doi:10.1016/j.ejor.2017.10.002>.
Author: Collin Erickson
Maintainer: Collin Erickson <collinberickson@gmail.com>
Diff between GauPro versions 0.2.8 dated 2023-02-27 and 0.2.11 dated 2023-04-11
DESCRIPTION | 8 +- MD5 | 24 ++++---- NEWS.md | 6 ++ R/kernel_Gaussian.R | 1 README.md | 18 ++---- build/vignette.rds |binary inst/doc/CrossValidationErrorCorrection.html | 22 +++---- inst/doc/GauPro.html | 4 - inst/doc/IntroductionToGPs.html | 4 - inst/doc/derivatives.html | 4 - inst/doc/surface_derivatives.html | 4 - tests/testthat/test_kernel_model_and_kernels.R | 71 ++++++++++++++++--------- tools/README-plot_dm-1.png |binary 13 files changed, 95 insertions(+), 71 deletions(-)
Title: Automatic Linear and Logistic Regression and Survival Analysis
Description: Make summary tables for descriptive statistics and select explanatory variables
automatically in various regression models. Support linear models, generalized linear
models and cox-proportional hazard models. Generate publication-ready tables summarizing
result of regression analysis and plots. The tables and plots can be exported in "HTML",
"pdf('LaTex')", "docx('MS Word')" and "pptx('MS Powerpoint')" documents.
Author: Keon-Woong Moon [aut, cre]
Maintainer: Keon-Woong Moon <cardiomoon@gmail.com>
Diff between autoReg versions 0.2.6 dated 2022-04-05 and 0.3.2 dated 2023-04-11
DESCRIPTION | 8 MD5 | 62 +- NAMESPACE | 7 NEWS | 113 ++-- R/adjustedPlot.R | 12 R/adjustedPlot.survreg.R | 24 R/adjustedPlot2.survreg.R |only R/df2flextable.R | 1 R/fill.R | 2 R/fit2final.R | 2 R/gaze.R | 5 R/gaze_sub.R | 33 + R/ggcmprsk.R | 21 R/ggcmprsk2.R | 3 R/myft.R | 9 R/showEffect.R | 25 build/vignette.rds |binary inst/doc/Automatic_Regression_Modeling.html | 642 ++++-------------------- inst/doc/Bootstrap_Prediction.html | 230 ++++---- inst/doc/Getting_started.html | 746 ++++------------------------ inst/doc/Statiastical_test_in_gaze.html | 587 ++++------------------ inst/doc/Survival.R | 7 inst/doc/Survival.Rmd | 7 inst/doc/Survival.html | 571 ++++----------------- man/adjustedPlot.survreg.Rd | 11 man/adjustedPlot2.survreg.Rd |only man/autoReg.Rd | 10 man/gaze.Rd | 16 man/gaze_sub.Rd | 6 man/ggcmprsk.Rd | 15 man/ggcmprsk2.Rd | 3 man/showEffect.Rd | 9 vignettes/Survival.Rmd | 7 33 files changed, 838 insertions(+), 2356 deletions(-)
Title: Create Actuarial Experience Studies: Prepare Data, Summarize
Results, and Create Reports
Description: Experience studies are used by actuaries to explore historical
experience across blocks of business and to inform assumption setting
activities. This package provides functions for preparing data, creating
studies, and beginning assumption development. Experience study methods,
including exposure calculations, are described in: Atkinson & McGarry
(2016) "Experience Study Calculations"
<https://www.soa.org/49378a/globalassets/assets/files/research/experience-study-calculations.pdf>.
The limited fluctuation credibility method used by the 'exp_stats()'
function is described in: Herzog (1999, ISBN:1-56698-374-6)
"Introduction to Credibility Theory".
Author: Matt Heaphy [aut, cre]
Maintainer: Matt Heaphy <mattrmattrs@gmail.com>
Diff between actxps versions 1.0.0 dated 2023-03-04 and 1.0.1 dated 2023-04-11
DESCRIPTION | 6 - MD5 | 26 ++++---- NEWS.md | 117 +++++++++++++++++++------------------- R/exp_stats.R | 7 -- R/expose.R | 4 - R/exposed_df_helpers.R | 2 R/iam_basic_2012_g2.R | 4 - R/plots.R | 4 - R/sim_data.R | 110 +++++++++++++++++------------------ man/autoplot_exp.Rd | 4 - man/exp_stats.Rd | 5 - man/expose.Rd | 4 - man/qx_iamb.Rd | 4 - tests/testthat/test-step_expose.R | 2 14 files changed, 152 insertions(+), 147 deletions(-)
Title: Spatial Coverage Sampling and Random Sampling from Compact
Geographical Strata
Description: Spatial coverage sampling and random sampling from compact
geographical strata created by k-means. See Walvoort et al. (2010)
<doi:10.1016/j.cageo.2010.04.005> for details.
Author: Dennis Walvoort [aut, cre, cph]
,
Dick Brus [aut, cph] ,
Jaap de Gruijter [aut, cph]
Maintainer: Dennis Walvoort <dennis.Walvoort@wur.nl>
Diff between spcosa versions 0.4-1 dated 2022-08-11 and 0.4-2 dated 2023-04-11
DESCRIPTION | 10 MD5 | 32 +-- build/partial.rdb |binary build/vignette.rds |binary demo/farmsumComposite.R | 8 demo/farmsumSCS.R | 10 demo/farmsumStS.R | 8 inst/CITATION | 127 +++--------- inst/NEWS.Rd | 410 +++++++++++++++++++-------------------- inst/doc/spcosa.R | 9 inst/doc/spcosa.Rmd | 24 +- inst/doc/spcosa.html | 388 ++++++++++++++++++------------------ man/estimate-methods.Rd | 10 man/spsample-methods.Rd | 10 man/stratify-methods.Rd | 180 ++++++++--------- tests/unitTests/runit_stratify.R | 10 vignettes/spcosa.Rmd | 24 +- 17 files changed, 616 insertions(+), 644 deletions(-)
Title: Authenticate and Create Google APIs
Description: Create R functions that interact with OAuth2 Google APIs
<https://developers.google.com/apis-explorer/> easily,
with auto-refresh and Shiny compatibility.
Author: Mark Edmondson [aut, cre] ,
Jennifer Bryan [ctb],
Johann deBoer [ctb],
Neal Richardson [ctb],
David Kulp [ctb],
Joe Cheng [ctb]
Maintainer: Mark Edmondson <m@sunholo.com>
Diff between googleAuthR versions 2.0.0 dated 2022-01-28 and 2.0.1 dated 2023-04-11
DESCRIPTION | 6 MD5 | 30 - NEWS.md | 5 R/gce.R | 9 README.md | 4 build/vignette.rds |binary inst/doc/advanced-building.Rmd | 8 inst/doc/advanced-building.html | 531 +++++++++++++++++++++----- inst/doc/building.html | 432 +++++++++++++++++---- inst/doc/google-authentication-types.Rmd | 49 ++ inst/doc/google-authentication-types.html | 591 ++++++++++++++++++++++++------ inst/doc/setup.html | 362 ++++++++++++++---- inst/doc/troubleshooting.html | 442 +++++++++++++++++----- man/gar_gce_auth.Rd | 2 vignettes/advanced-building.Rmd | 8 vignettes/google-authentication-types.Rmd | 49 ++ 16 files changed, 2019 insertions(+), 509 deletions(-)
Title: Suite of GR Hydrological Models for Precipitation-Runoff
Modelling
Description: Hydrological modelling tools developed at INRAE-Antony (HYCAR Research Unit, France). The package includes several conceptual rainfall-runoff models (GR4H, GR5H, GR4J, GR5J, GR6J, GR2M, GR1A) that can be applied either on a lumped or semi-distributed way. A snow accumulation and melt model (CemaNeige) and the associated functions for the calibration and evaluation of models are also included. Use help(airGR) for package description and references.
Author: Laurent Coron [aut, trl] ,
Olivier Delaigue [aut, cre] ,
Guillaume Thirel [aut, ths] ,
David Dorchies [aut] ,
Charles Perrin [aut, ths] ,
Claude Michel [aut, ths],
Vazken Andreassian [ctb, ths] ,
Francois Bourgin [ctb] ,
Pierre Brigode [ctb] ,
Nicola [...truncated...]
Maintainer: Olivier Delaigue <airGR@inrae.fr>
Diff between airGR versions 1.7.0 dated 2022-02-22 and 1.7.4 dated 2023-04-11
DESCRIPTION | 10 MD5 | 33 - NAMESPACE | 4 NEWS.md | 11 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 4 inst/doc/V01_get_started.html | 713 +++++++++++++++++++++++++-------- inst/doc/V02.1_param_optim.R | 8 inst/doc/V02.1_param_optim.Rmd | 8 inst/doc/V02.1_param_optim.html | 566 +++++++++++++++++++------- inst/doc/V02.2_param_mcmc.html | 412 +++++++++++++++---- inst/doc/V03_param_sets_GR4J.html | 472 +++++++++++++++++---- inst/doc/V04_cemaneige_hysteresis.html | 437 ++++++++++++++++---- inst/doc/V05_sd_model.html | 456 ++++++++++++++++----- tests/testthat/Rplots.pdf |only vignettes/V00_airgr_ref.bib | 4 vignettes/V02.1_param_optim.Rmd | 8 18 files changed, 2429 insertions(+), 717 deletions(-)
Title: Maps of Finland
Description: Maps and other related data of Finland.
Author: Jari Haukka [aut, cre]
Maintainer: Jari Haukka <jari.haukka@helsinki.fi>
Diff between mapsFinland versions 0.2.1 dated 2023-01-13 and 0.2.2 dated 2023-04-11
DESCRIPTION | 9 +--- MD5 | 28 ++++++------- NEWS.md | 6 +- R/data.R | 88 +++++++++++++++++++++++++++++++++-------- data/hyvinvointialueet2023.rda |only data/kunnat2019.rda |binary data/maakunta2019.rda |binary data/seutukunnat2019.rda |binary data/suuralue2019.rda |binary data/tyossakayntialue2019.rda |binary data/vaalipiiri2019.rda |binary man/hyvinvointialueet2023.Rd |only man/maakunta2019.Rd | 13 ++++++ man/mkMapFinland.Rd | 8 ++- man/suuralue2019.Rd | 13 ++++++ man/vaalipiiri2019.Rd | 11 +++-- 16 files changed, 132 insertions(+), 44 deletions(-)
Title: Testing for Change in C-Statistic
Description: Calculate the confidence interval and p value for change in C-statistic. The adjusted C-statistic is calculated by using formula as "Somers' Dxy rank correlation"/2+0.5. The confidence interval was calculated by using the bootstrap method. The p value was calculated by using the Z testing method. Please refer to the article of Peter Ganz et al. (2016) <doi:10.1001/jama.2016.5951>.
Author: Zhicheng Du, Yuantao Hao
Maintainer: Zhicheng Du<dgdzc@hotmail.com>
Diff between CsChange versions 0.1.6 dated 2020-07-18 and 0.1.7 dated 2023-04-11
DESCRIPTION | 7 +-- MD5 | 8 +-- NAMESPACE | 2 R/CsChange.R | 116 +++++++++++++++++++++++++++++++++++++++++++++++++++----- man/CsChange.Rd | 5 ++ 5 files changed, 119 insertions(+), 19 deletions(-)
Title: Useful Functions for Data Processing
Description: In ancient Chinese mythology, Bai Ze is a divine creature that knows the needs of everything.
'baizer' provides data processing functions frequently used by the author.
Hope this package also knows what you want!
Author: William Song [aut, cre]
Maintainer: William Song <william_swl@163.com>
Diff between baizer versions 0.3.0 dated 2023-03-10 and 0.4.0 dated 2023-04-11
DESCRIPTION | 12 MD5 | 77 +- NAMESPACE | 31 NEWS.md | 22 R/IO.R | 196 +++++ R/R-cmd-check.R |only R/baizer-package.R | 7 R/dataframe.R | 105 ++ R/numbers.R | 81 +- R/stat.R | 61 + R/tbflt.R | 83 +- R/utils-basic.R | 248 ++++++ R/utils-tidy-eval.R |only README.md | 471 +++++++++++- man/atomic_expr.Rd |only man/cmdargs.Rd | 1 man/empty_dir.Rd |only man/empty_file.Rd |only man/expr_pileup.Rd |only man/fancy_count.Rd | 2 man/filterC.Rd | 28 man/group_vector.Rd |only man/hist_bins.Rd |only man/percent_to_float.Rd | 6 man/reg_match.Rd |only man/remove_nacol.Rd |only man/remove_narow.Rd |only man/sftp_connect.Rd |only man/sftp_download.Rd |only man/sortf.Rd |only man/split_path.Rd |only man/split_vector.Rd |only man/stat_fc.Rd | 12 man/stat_test.Rd | 3 man/tbflt.Rd | 4 man/tidyeval.Rd |only man/write_excel.Rd | 5 tests/testthat/_snaps/IO/1sheet.xlsx |binary tests/testthat/_snaps/IO/2sheets.xlsx |binary tests/testthat/_snaps/dataframe.md | 1257 ++++++++++++++++++++++++++++++---- tests/testthat/_snaps/stat.md | 445 ++++++++++-- tests/testthat/_snaps/tbflt.md | 331 ++++++++ tests/testthat/test-IO.R | 43 + tests/testthat/test-dataframe.R | 51 + tests/testthat/test-numbers.R | 39 - tests/testthat/test-stat.R | 42 - tests/testthat/test-tbflt.R | 60 + tests/testthat/test-utils-basic.R | 122 +++ 48 files changed, 3470 insertions(+), 375 deletions(-)
Title: Creation, Reading and Validation of 'mzqc' Files
Description: Reads, writes and validates 'mzQC' files. The 'mzQC' format is a
standardized file format for the exchange, transmission, and archiving of
quality metrics derived from biological mass spectrometry data, as defined
by the HUPO-PSI (Human Proteome Organisation - Proteomics Standards Initiative)
Quality Control working group.
See <https://hupo-psi.github.io/mzQC/> for details.
Author: Chris Bielow [aut, cre] ,
David Jimenez-Morales [rev, ctb]
Maintainer: Chris Bielow <chris.bielow@bsc.fu-berlin.de>
Diff between rmzqc versions 0.1.0 dated 2022-08-18 and 0.4.1 dated 2023-04-11
rmzqc-0.1.0/rmzqc/NEWS |only rmzqc-0.4.1/rmzqc/DESCRIPTION | 36 +++-- rmzqc-0.4.1/rmzqc/MD5 | 59 +++++--- rmzqc-0.4.1/rmzqc/NAMESPACE | 7 + rmzqc-0.4.1/rmzqc/NEWS.md |only rmzqc-0.4.1/rmzqc/R/conversion.R | 4 rmzqc-0.4.1/rmzqc/R/io.R | 25 +++ rmzqc-0.4.1/rmzqc/R/mzQC.R | 82 +++++++---- rmzqc-0.4.1/rmzqc/R/obo.R | 14 +- rmzqc-0.4.1/rmzqc/R/templates.R | 4 rmzqc-0.4.1/rmzqc/R/validator.R |only rmzqc-0.4.1/rmzqc/README.md | 154 ++++++++++++---------- rmzqc-0.4.1/rmzqc/build/vignette.rds |binary rmzqc-0.4.1/rmzqc/inst/doc/basic_guide.R | 10 + rmzqc-0.4.1/rmzqc/inst/doc/basic_guide.Rmd | 10 + rmzqc-0.4.1/rmzqc/inst/doc/basic_guide.html | 30 ++-- rmzqc-0.4.1/rmzqc/inst/doc/validation_guide.R |only rmzqc-0.4.1/rmzqc/inst/doc/validation_guide.Rmd |only rmzqc-0.4.1/rmzqc/inst/doc/validation_guide.html |only rmzqc-0.4.1/rmzqc/inst/schema |only rmzqc-0.4.1/rmzqc/inst/testdata |only rmzqc-0.4.1/rmzqc/man/CV_.Rd | 2 rmzqc-0.4.1/rmzqc/man/fromDatatoMzQC.Rd | 14 -- rmzqc-0.4.1/rmzqc/man/fromDatatoMzQCobj.Rd |only rmzqc-0.4.1/rmzqc/man/getCVSingleton.Rd |only rmzqc-0.4.1/rmzqc/man/getCVTemplate.Rd | 2 rmzqc-0.4.1/rmzqc/man/getQualityMetricTemplate.Rd | 2 rmzqc-0.4.1/rmzqc/man/getSyntaxValidator.Rd |only rmzqc-0.4.1/rmzqc/man/readMZQC.Rd |only rmzqc-0.4.1/rmzqc/man/validateFromFile.Rd |only rmzqc-0.4.1/rmzqc/man/validateFromObj.Rd |only rmzqc-0.4.1/rmzqc/man/validateFromString.Rd |only rmzqc-0.4.1/rmzqc/man/writeMZQC.Rd | 8 - rmzqc-0.4.1/rmzqc/tests/testthat/test-mzQC.R | 13 + rmzqc-0.4.1/rmzqc/tests/testthat/test_io.R |only rmzqc-0.4.1/rmzqc/tests/testthat/test_obo.R | 6 rmzqc-0.4.1/rmzqc/tests/testthat/test_validate.R |only rmzqc-0.4.1/rmzqc/vignettes/basic_guide.Rmd | 10 + rmzqc-0.4.1/rmzqc/vignettes/test.mzQC |only rmzqc-0.4.1/rmzqc/vignettes/validation_guide.Rmd |only 40 files changed, 320 insertions(+), 172 deletions(-)
Title: Raw System Credential Store Access from R
Description: Aims to support all features of the system credential store,
including non-portable ones. Supports 'Keychain' on 'macOS', and
'Credential Manager' on 'Windows'. See the 'keyring' package if you
need a portable 'API'.
Author: Gabor Csardi [aut, cre],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between oskeyring versions 0.1.5 dated 2022-10-27 and 0.1.6 dated 2023-04-11
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ src/keyring-macos.c | 4 ++-- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Hierarchical Partitioning of Marginal R2 for Generalized
Mixed-Effect Models
Description: Conducts hierarchical partitioning to calculate individual contributions of each fixed effects towards marginal R2 for generalized mixed-effect model based on output of r.squaredGLMM() in 'MuMIn', applying the algorithm of Lai J.,Zou Y., Zhang S.,Zhang X.,Mao L.(2022)glmm.hp: an R package for computing individual effect of predictors in generalized linear mixed models.Journal of Plant Ecology,15(6)1302-1307<doi:10.1093/jpe/rtac096>.
Author: Jiangshan Lai [aut, cre] ,
Kim Nimon [aut]
Maintainer: Jiangshan Lai <lai@njfu.edu.cn>
Diff between glmm.hp versions 0.0-7 dated 2023-03-05 and 0.0-8 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/glmm.hp.r | 25 +++++++++++++++++++++---- man/glmm.hp.Rd | 6 +++++- 4 files changed, 33 insertions(+), 12 deletions(-)
Title: Access Victorian Spatial Data Through Web File Services (WFS)
Description: Easily interfaces R to spatial datasets available through
the Victorian Government's WFS (Web Feature Service): <https://opendata.maps.vic.gov.au/geoserver/ows?request=GetCapabilities&service=wfs>,
which allows users to read in 'sf' data from these sources. VicmapR uses the lazy querying approach and code developed by Teucher et al. (2021) for the 'bcdata' R package <doi:10.21105/joss.02927>.
Author: Justin Cally [aut, cre] ,
Rachel Swain [ctb],
Andy Teucher [aut] ,
Sam Albers [aut] ,
Stephanie Hazlitt [aut] ,
Province of British Columbia [cph]
Maintainer: Justin Cally <justin.g.cally@gmail.com>
Diff between VicmapR versions 0.1.10 dated 2023-03-31 and 0.2.0 dated 2023-04-11
DESCRIPTION | 20 - MD5 | 92 +++--- NAMESPACE | 2 NEWS.md | 12 R/build-query.R | 37 +- R/convert-layer-names.R |only R/cql-predicates.R | 27 + R/cql-translate.R | 55 ++-- R/data.R |only R/filter.R | 9 R/globals.R | 2 R/listFeatures.R | 94 ++++++ R/metadata.R | 43 +-- R/select.R | 9 R/utils-metadata.R | 14 - R/utils-options.R | 9 README.md | 113 ++++---- build/vignette.rds |binary data |only inst/doc/beginner_vicmap.R | 2 inst/doc/beginner_vicmap.Rmd | 250 +++++++----------- inst/doc/beginner_vicmap.html | 409 +++++++++++++----------------- inst/doc/migration_odp.R |only inst/doc/migration_odp.Rmd |only inst/doc/migration_odp.html |only inst/doc/query_vicmap.Rmd | 22 - inst/doc/query_vicmap.html | 26 - man/collect.Rd | 2 man/convert_layer_name.Rd |only man/data_citation.Rd | 8 man/feature_hits.Rd | 2 man/filter.Rd | 4 man/geom_col_name.Rd | 6 man/head.Rd | 2 man/listLayers.Rd | 6 man/name_conversions.Rd |only man/print.vicmap_promise.Rd | 2 man/select.Rd | 4 man/show_query.Rd | 2 man/vicmap_options.Rd | 2 man/vicmap_query.Rd | 2 tests/testthat/test-build-query.R | 27 - tests/testthat/test-citation.R | 10 tests/testthat/test-convert-layer-names.R |only tests/testthat/test-cql-predicates.R | 7 tests/testthat/test-filter.R | 40 ++ tests/testthat/test-listLayers.R | 9 tests/testthat/test-utils-metadata.R | 4 tests/testthat/test-utils-options.R | 2 vignettes/beginner_vicmap.Rmd | 250 +++++++----------- vignettes/migration_odp.Rmd |only vignettes/query_vicmap.Rmd | 22 - 52 files changed, 857 insertions(+), 803 deletions(-)
Title: Intensity Analysis of Spatial Point Patterns on Complex Networks
Description: Tools to analyze point patterns in space occurring over planar network structures derived from graph-related intensity measures for undirected, directed, and mixed networks.
This package is based on the following research: Eckardt and Mateu (2018) <doi:10.1080/10618600.2017.1391695>. Eckardt and Mateu (2021) <doi:10.1007/s11749-020-00720-4>.
Author: Pol Llagostera [aut, cre],
Matthias Eckardt [aut]
Maintainer: Pol Llagostera <pol.llagostera@udl.cat>
Diff between intensitynet versions 1.3.1 dated 2022-09-26 and 1.4.0 dated 2023-04-11
intensitynet-1.3.1/intensitynet/man/ApplyWindow.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/NodeGeneralCorrelation.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/NodeLocalCorrelation.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/PathTotalWeight.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/PlotHeatmap.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/PlotNeighborhood.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/ShortestPath.intensitynet.Rd |only intensitynet-1.3.1/intensitynet/man/plot.intensitynetDir.Rd |only intensitynet-1.3.1/intensitynet/man/plot.intensitynetMix.Rd |only intensitynet-1.3.1/intensitynet/man/plot.intensitynetUnd.Rd |only intensitynet-1.4.0/intensitynet/DESCRIPTION | 10 intensitynet-1.4.0/intensitynet/MD5 | 102 - intensitynet-1.4.0/intensitynet/NAMESPACE | 16 intensitynet-1.4.0/intensitynet/NEWS.md | 20 intensitynet-1.4.0/intensitynet/R/intensitynet.R | 548 ++++++---- intensitynet-1.4.0/intensitynet/R/intensitynetDir.R | 76 - intensitynet-1.4.0/intensitynet/R/intensitynetMix.R | 82 - intensitynet-1.4.0/intensitynet/R/intensitynetUnd.R | 75 - intensitynet-1.4.0/intensitynet/R/netTools.R | 41 intensitynet-1.4.0/intensitynet/data/dir_intnet_chicago.rda |binary intensitynet-1.4.0/intensitynet/data/mix_intnet_chicago.rda |binary intensitynet-1.4.0/intensitynet/data/und_intnet_chicago.rda |binary intensitynet-1.4.0/intensitynet/inst/CITATION | 32 intensitynet-1.4.0/intensitynet/man/ApplyWindow.Rd | 5 intensitynet-1.4.0/intensitynet/man/AreEventsRelated.Rd |only intensitynet-1.4.0/intensitynet/man/EdgeIntensitiesAndProportions.intensitynet.Rd | 3 intensitynet-1.4.0/intensitynet/man/EdgeIntensity.intensitynet.Rd | 5 intensitynet-1.4.0/intensitynet/man/GeoreferencedGgplot2.netTools.Rd | 4 intensitynet-1.4.0/intensitynet/man/GetEventCorrection.Rd |only intensitynet-1.4.0/intensitynet/man/GetEvents.Rd |only intensitynet-1.4.0/intensitynet/man/GetGraph.Rd |only intensitynet-1.4.0/intensitynet/man/GetGraphType.Rd |only intensitynet-1.4.0/intensitynet/man/IsIntensitynet.Rd |only intensitynet-1.4.0/intensitynet/man/NodeGeneralCorrelation.Rd | 13 intensitynet-1.4.0/intensitynet/man/NodeLocalCorrelation.Rd | 5 intensitynet-1.4.0/intensitynet/man/PathTotalWeight.Rd | 59 - intensitynet-1.4.0/intensitynet/man/PlotHeatmap.Rd | 14 intensitynet-1.4.0/intensitynet/man/PlotNeighborhood.Rd | 5 intensitynet-1.4.0/intensitynet/man/PointToLine.netTools.Rd | 4 intensitynet-1.4.0/intensitynet/man/PointToSegment.netTools.Rd | 4 intensitynet-1.4.0/intensitynet/man/PointToSegment_deprecated.netTools.Rd | 4 intensitynet-1.4.0/intensitynet/man/RelateEventsToNetwork.Rd | 3 intensitynet-1.4.0/intensitynet/man/RelateEventsToNetwork.intensitynetDir.Rd | 3 intensitynet-1.4.0/intensitynet/man/RelateEventsToNetwork.intensitynetMix.Rd | 3 intensitynet-1.4.0/intensitynet/man/RelateEventsToNetwork.intensitynetUnd.Rd | 5 intensitynet-1.4.0/intensitynet/man/ShortestNodeDistance.intensitynet.Rd | 4 intensitynet-1.4.0/intensitynet/man/ShortestPath.Rd | 76 - intensitynet-1.4.0/intensitynet/man/Undirected2RandomDirectedAdjMtx.netTools.Rd | 3 intensitynet-1.4.0/intensitynet/man/dir_intnet_chicago.Rd | 2 intensitynet-1.4.0/intensitynet/man/intensitynet.Rd | 9 intensitynet-1.4.0/intensitynet/man/mix_intnet_chicago.Rd | 2 intensitynet-1.4.0/intensitynet/man/nodeIntensity.intensitynetDir.Rd | 2 intensitynet-1.4.0/intensitynet/man/nodeIntensity.intensitynetMix.Rd | 3 intensitynet-1.4.0/intensitynet/man/nodeIntensity.intensitynetUnd.Rd | 2 intensitynet-1.4.0/intensitynet/man/plot.intensitynet.Rd |only intensitynet-1.4.0/intensitynet/man/summary.Rd |only intensitynet-1.4.0/intensitynet/man/und_intnet_chicago.Rd | 2 intensitynet-1.4.0/intensitynet/tests/testthat/test-directed.R | 2 intensitynet-1.4.0/intensitynet/tests/testthat/test-general.R | 13 intensitynet-1.4.0/intensitynet/tests/testthat/test-mixed.R | 2 intensitynet-1.4.0/intensitynet/tests/testthat/test-undirected.R | 2 61 files changed, 687 insertions(+), 578 deletions(-)
Title: Shiny App. Idiograms with Marks and Karyotype Indices
Description: Plot idiograms of karyotypes, plasmids, circular chr. having a set of data.frames for chromosome data and optionally mark data. Two styles of chromosomes can be used: without or with visible chromatids. Supports micrometers, cM and Mb or any unit. Three styles of centromeres are available: triangle, rounded and inProtein; and six styles of marks are available: square (squareLeft), dots, cM (cMLeft), cenStyle, upArrow (downArrow), exProtein (inProtein); its legend (label) can be drawn inline or to the right of karyotypes. Idiograms can also be plotted in concentric circles. It is possible to calculate chromosome indices by Levan et al. (1964) <https:onlinelibrary.wiley.com/doi/abs/10.1111/j.1601-5223.1964.tb01953.x>, karyotype indices of Watanabe et al. (1999) <doi:10.1007/PL00013869> and Romero-Zarco (1986) <doi:10.2307/1221906> and classify chromosomes by morphology Guerra (1986) and Levan et al. (1964).
Author: Fernando Roa [aut, cre],
Mariana PC Telles [ctb]
Maintainer: Fernando Roa <froao@unal.edu.co>
Diff between idiogramFISH versions 2.0.10 dated 2023-04-05 and 2.0.11 dated 2023-04-11
idiogramFISH-2.0.10/idiogramFISH/vignettes/bigdfChrSizeHolo.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/bigdfChrSizeHolo2.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/climon.svg |only idiogramFISH-2.0.10/idiogramFISH/vignettes/dfOfChrSizeVector.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/firstplot.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/monoholoCS.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/mydfChrSize2.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/secondplot.png |only idiogramFISH-2.0.10/idiogramFISH/vignettes/thirdplot.png |only idiogramFISH-2.0.11/idiogramFISH/DESCRIPTION | 8 idiogramFISH-2.0.11/idiogramFISH/MD5 | 77 idiogramFISH-2.0.11/idiogramFISH/NEWS.md | 8 idiogramFISH-2.0.11/idiogramFISH/README.md | 571 --- idiogramFISH-2.0.11/idiogramFISH/inst/doc/AVignette.R | 8 idiogramFISH-2.0.11/idiogramFISH/inst/doc/AVignette.Rmd | 10 idiogramFISH-2.0.11/idiogramFISH/inst/doc/AVignette.html | 2 idiogramFISH-2.0.11/idiogramFISH/inst/doc/index.html | 10 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserColumnMod.R | 86 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserDataframes.R | 183 - idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserIndices.R | 8 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserNuccore.R | 178 - idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserPlot.R | 355 -- idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserPosButtons.R | 8 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserPresets.R | 314 - idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/obser/obserSwap.R | 15 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputDataframes.R | 199 - idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputLogCode.R | 5 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputMenu.R | 16 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputNuccore.R | 179 - idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputPanels.R | 1692 ++++++---- idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputPlot.R | 537 +-- idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputTabs.R | 99 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/output/outputTabsetpanels.R | 78 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/rsconnect/shinyapps.io/ferapps/iboard.dcf | 6 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/ui.R | 2 idiogramFISH-2.0.11/idiogramFISH/inst/shinyApps/iBoard/www/DESCRIPTION | 4 idiogramFISH-2.0.11/idiogramFISH/man/figures/circular.png |binary idiogramFISH-2.0.11/idiogramFISH/man/figures/cranmanualbookdown.svg | 2 idiogramFISH-2.0.11/idiogramFISH/man/figures/cranversion.svg | 16 idiogramFISH-2.0.11/idiogramFISH/man/figures/develmanualvignette.svg | 2 idiogramFISH-2.0.11/idiogramFISH/man/figures/gitbadge.svg | 2 idiogramFISH-2.0.11/idiogramFISH/man/figures/manual.svg | 2 idiogramFISH-2.0.11/idiogramFISH/man/figures/pkgdownver.svg | 2 idiogramFISH-2.0.11/idiogramFISH/vignettes/AVignette.Rmd | 10 44 files changed, 2336 insertions(+), 2358 deletions(-)
Title: Semiparametric Model-Assisted Estimation in Finite Populations
Description: It is a framework to fit semiparametric regression estimators for the total parameter of a finite population when the interest variable is asymmetric distributed. The main references for this package are Sarndal C.E., Swensson B., and Wretman J. (2003,ISBN: 978-0-387-40620-6, "Model Assisted Survey Sampling." Springer-Verlag)
Cardozo C.A, Paula G.A. and Vanegas L.H. (2022) "Generalized log-gamma additive partial linear mdoels with P-spline smoothing", Statistical Papers.
Cardozo C.A and Alonso-Malaver C.E. (2022). "Semi-parametric model assisted estimation in finite populations." In preparation.
Author: Carlos Alberto Cardozo Delgado [aut, cre, cph],
Carlos E. Alonso-Malaver [aut]
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sregsurvey versions 0.1.2 dated 2022-01-09 and 0.1.3 dated 2023-04-11
DESCRIPTION | 14 +++++++------- MD5 | 22 +++++++++++----------- R/sreg_ber.R | 9 ++++++--- R/sreg_pips.R | 11 +++++++---- R/sreg_poisson.R | 9 ++++++--- R/sreg_srswr.R | 6 ++++-- R/sreg_stsi.R | 9 ++++++--- man/sreg_ber.Rd | 9 ++++++--- man/sreg_pips.Rd | 11 +++++++---- man/sreg_poisson.Rd | 9 ++++++--- man/sreg_srswr.Rd | 6 ++++-- man/sreg_stsi.Rd | 9 ++++++--- 12 files changed, 76 insertions(+), 48 deletions(-)
Title: Analysis of Niche Evolution using Niche and Distribution Models
Description: Constructing niche models and analyzing patterns of niche evolution. Acts as an interface for many popular modeling algorithms, and allows users to conduct Monte Carlo tests to address basic questions in evolutionary ecology and biogeography. Warren, D.L., R.E. Glor, and M. Turelli (2008) <doi:10.1111/j.1558-5646.2008.00482.x> Glor, R.E., and D.L. Warren (2011) <doi:10.1111/j.1558-5646.2010.01177.x> Warren, D.L., R.E. Glor, and M. Turelli (2010) <doi:10.1111/j.1600-0587.2009.06142.x> Cardillo, M., and D.L. Warren (2016) <doi:10.1111/geb.12455> D.L. Warren, L.J. Beaumont, R. Dinnage, and J.B. Baumgartner (2019) <doi:10.1111/ecog.03900>.
Author: Dan Warren [aut, cre] ,
Russell Dinnage [aut]
Maintainer: Dan Warren <dan.l.warren@gmail.com>
Diff between ENMTools versions 1.1.0 dated 2023-03-15 and 1.1.1 dated 2023-04-11
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 15 ++++++++++++++- R/enmtools.maxent.R | 8 ++++---- 4 files changed, 25 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-11-24 0.1.2
2022-11-09 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-02-06 0.0.1