Title: Datasets to Help Teach Statistics
Description: In the spirit of Anscombe's quartet, this package includes datasets
that demonstrate the importance of visualizing your data, the importance of
not relying on statistical summary measures alone, and why additional
assumptions about the data generating mechanism are needed when estimating
causal effects. The package includes "Anscombe's Quartet" (Anscombe 1973) <doi:10.1080/00031305.1973.10478966>,
D'Agostino McGowan & Barrett (2023) "Causal Quartet" <doi:10.48550/arXiv.2304.02683>,
"Datasaurus Dozen" (Matejka & Fitzmaurice 2017), "Interaction Triptych" (Rohrer & Arslan 2021) <doi:10.1177/25152459211007368>, "Rashomon Quartet" (Biecek et al. 2023) <doi:10.48550/arXiv.2302.13356>, and
Gelman "Variation and Heterogeneity Causal Quartets" (Gelman et al. 2023) <doi:10.48550/arXiv.2302.12878>.
Author: Lucy D'Agostino McGowan [aut, cre]
Maintainer: Lucy D'Agostino McGowan <lucydagostino@gmail.com>
Diff between quartets versions 0.1.0 dated 2023-04-12 and 0.1.1 dated 2023-04-13
DESCRIPTION | 6 ++--- MD5 | 19 +++++++++-------- NEWS.md | 4 +++ R/causal_quartet_time.R | 41 +++++++++++++++++++------------------ data/causal_collider_time.rda |binary data/causal_confounding_time.rda |binary data/causal_m_bias_time.rda |binary data/causal_mediator_time.rda |binary data/causal_quartet_time.rda |only inst/CITATION | 4 +-- man/causal_collider_time.Rd | 43 ++++++++++++++++++++------------------- 11 files changed, 63 insertions(+), 54 deletions(-)
Title: Tensors and Neural Networks with 'GPU' Acceleration
Description: Provides functionality to define and train neural networks similar to
'PyTorch' by Paszke et al (2019) <arXiv:1912.01703> but written entirely in R
using the 'libtorch' library. Also supports low-level tensor operations and
'GPU' acceleration.
Author: Daniel Falbel [aut, cre, cph],
Javier Luraschi [aut],
Dmitriy Selivanov [ctb],
Athos Damiani [ctb],
Christophe Regouby [ctb],
Krzysztof Joachimiak [ctb],
Hamada S. Badr [ctb],
RStudio [cph]
Maintainer: Daniel Falbel <daniel@rstudio.com>
Diff between torch versions 0.9.1 dated 2023-01-23 and 0.10.0 dated 2023-04-13
torch-0.10.0/torch/DESCRIPTION | 50 torch-0.10.0/torch/MD5 | 167 torch-0.10.0/torch/NAMESPACE | 16 torch-0.10.0/torch/NEWS.md | 27 torch-0.10.0/torch/R/RcppExports.R | 8850 +++++--- torch-0.10.0/torch/R/autocast.R |only torch-0.10.0/torch/R/autograd.R | 39 torch-0.10.0/torch/R/gen-method.R | 111 torch-0.10.0/torch/R/gen-namespace-docs.R | 13 torch-0.10.0/torch/R/gen-namespace-examples.R | 36 torch-0.10.0/torch/R/gen-namespace.R | 8747 ++++++-- torch-0.10.0/torch/R/generator.R | 77 torch-0.10.0/torch/R/install.R | 863 torch-0.10.0/torch/R/lantern_load.R | 15 torch-0.10.0/torch/R/linalg.R | 2 torch-0.10.0/torch/R/nn-activation.R | 23 torch-0.10.0/torch/R/nn.R | 54 torch-0.10.0/torch/R/nnf-activation.R | 13 torch-0.10.0/torch/R/optim-adamw.R |only torch-0.10.0/torch/R/optim.R | 84 torch-0.10.0/torch/R/package.R | 18 torch-0.10.0/torch/R/save.R | 4 torch-0.10.0/torch/R/tensor.R | 6 torch-0.10.0/torch/R/translate.R | 8 torch-0.10.0/torch/R/utils-data-dataloader.R | 5 torch-0.10.0/torch/R/utils-data-fetcher.R | 2 torch-0.10.0/torch/R/utils-data-sampler.R | 4 torch-0.10.0/torch/R/utils-data.R | 21 torch-0.10.0/torch/build/partial.rdb |binary torch-0.10.0/torch/configure |only torch-0.10.0/torch/configure.win |only torch-0.10.0/torch/inst/doc/installation.Rmd | 43 torch-0.10.0/torch/inst/doc/installation.html | 44 torch-0.10.0/torch/inst/include/lantern.h |only torch-0.10.0/torch/inst/include/lantern/lantern.h | 2499 +- torch-0.10.0/torch/inst/include/torch_api.h | 2 torch-0.10.0/torch/inst/include/torch_impl.h | 3 torch-0.10.0/torch/inst/include/torch_imports.h | 9 torch-0.10.0/torch/inst/include/torch_types.h | 3 torch-0.10.0/torch/man/cuda_amp_grad_scaler.Rd |only torch-0.10.0/torch/man/dataset.Rd | 7 torch-0.10.0/torch/man/install_torch.Rd | 45 torch-0.10.0/torch/man/install_torch_from_file.Rd | 28 torch-0.10.0/torch/man/local_autocast.Rd |only torch-0.10.0/torch/man/nn_silu.Rd |only torch-0.10.0/torch/man/nnf_silu.Rd |only torch-0.10.0/torch/man/optim_adamw.Rd |only torch-0.10.0/torch/man/torch_eig.Rd | 5 torch-0.10.0/torch/man/torch_einsum.Rd | 10 torch-0.10.0/torch/man/torch_get_rng_state.Rd |only torch-0.10.0/torch/man/torch_lstsq.Rd | 27 torch-0.10.0/torch/man/torch_manual_seed.Rd | 24 torch-0.10.0/torch/man/torch_matrix_rank.Rd | 13 torch-0.10.0/torch/man/torch_nansum.Rd | 2 torch-0.10.0/torch/man/torch_ormqr.Rd | 2 torch-0.10.0/torch/man/torch_where.Rd | 4 torch-0.10.0/torch/man/with_enable_grad.Rd | 10 torch-0.10.0/torch/man/with_no_grad.Rd | 10 torch-0.10.0/torch/src/Makevars.in |only torch-0.10.0/torch/src/RcppExports.cpp |10476 ++++++++-- torch-0.10.0/torch/src/amp.cpp |only torch-0.10.0/torch/src/autograd.cpp | 11 torch-0.10.0/torch/src/codegen.cpp | 4 torch-0.10.0/torch/src/dtype.cpp | 7 torch-0.10.0/torch/src/gen-namespace.cpp | 3927 +++ torch-0.10.0/torch/src/generator.cpp | 20 torch-0.10.0/torch/src/indexing.cpp | 7 torch-0.10.0/torch/src/tensor.cpp | 16 torch-0.10.0/torch/src/tensor_list.cpp | 13 torch-0.10.0/torch/src/torch_api.cpp | 74 torch-0.10.0/torch/src/torch_exports.cpp | 1 torch-0.10.0/torch/src/utils.cpp | 5 torch-0.10.0/torch/src/variable_list.cpp | 5 torch-0.10.0/torch/tests/testthat/helper-optim.R | 4 torch-0.10.0/torch/tests/testthat/test-autocast.R |only torch-0.10.0/torch/tests/testthat/test-autograd.R | 45 torch-0.10.0/torch/tests/testthat/test-fork.R |only torch-0.10.0/torch/tests/testthat/test-gen-namespace.R | 44 torch-0.10.0/torch/tests/testthat/test-generator.R | 53 torch-0.10.0/torch/tests/testthat/test-nn-activation.R | 15 torch-0.10.0/torch/tests/testthat/test-nn.R | 48 torch-0.10.0/torch/tests/testthat/test-optim-adamw.R |only torch-0.10.0/torch/tests/testthat/test-tensor.R | 12 torch-0.10.0/torch/tests/testthat/test-translate.R | 2 torch-0.10.0/torch/tests/testthat/test-utils-data.R | 20 torch-0.10.0/torch/tests/testthat/tracedmodule.pt |binary torch-0.10.0/torch/tools/create-decls.R | 3 torch-0.10.0/torch/tools/torchgen/R/cpp.R | 28 torch-0.10.0/torch/tools/torchgen/R/r.R | 9 torch-0.10.0/torch/tools/torchgen/R/utils.R | 2 torch-0.10.0/torch/tools/torchgen/inst/declaration/Declarations-1.13.1.yaml |only torch-0.10.0/torch/vignettes/installation.Rmd | 43 torch-0.9.1/torch/src/Makevars |only torch-0.9.1/torch/tools/torchgen/inst/declaration/Declarations-1.12.1.yaml |only 94 files changed, 28155 insertions(+), 8784 deletions(-)
Title: Robust Model-Based Clustering for Data Sets with Missing Values
at Random
Description: Implementation of robust model-based cluster analysis for data sets with missing values at random.
The models used are: Multivariate Contaminated Normal Mixture (MCNM, Tong and Tortora, 2022, <doi:10.1007/s11634-021-00476-1>),
Multivariate Generalized Hyperbolic Mixture (MGHM, Wei et al., 2019, <doi:10.1016/j.csda.2018.08.016>),
Multivariate Skew's t Mixture (MStM, Wei et al., 2019, <doi:10.1016/j.csda.2018.08.016>),
Multivariate t Mixture (MtM, Wang et al., 2004, <doi:10.1016/j.patrec.2004.01.010>), and
Multivariate Normal Mixture (MNM, Ghahramani and Jordan, 1994, <doi:10.21236/ADA295618>).
Author: Hung Tong [aut, cre],
Cristina Tortora [aut, ths, dgs]
Maintainer: Hung Tong <hungtongmx@gmail.com>
Diff between MixtureMissing versions 1.0.2 dated 2022-01-30 and 2.0.0 dated 2023-04-13
MixtureMissing-1.0.2/MixtureMissing/R/CNM.R |only MixtureMissing-1.0.2/MixtureMissing/R/NM.R |only MixtureMissing-1.0.2/MixtureMissing/R/tM.R |only MixtureMissing-1.0.2/MixtureMissing/man/CNM.Rd |only MixtureMissing-1.0.2/MixtureMissing/man/NM.Rd |only MixtureMissing-1.0.2/MixtureMissing/man/tM.Rd |only MixtureMissing-2.0.0/MixtureMissing/DESCRIPTION | 25 MixtureMissing-2.0.0/MixtureMissing/MD5 | 42 MixtureMissing-2.0.0/MixtureMissing/NAMESPACE | 12 MixtureMissing-2.0.0/MixtureMissing/R/MCNM.R | 1658 +++++++--- MixtureMissing-2.0.0/MixtureMissing/R/MGHM.R |only MixtureMissing-2.0.0/MixtureMissing/R/MNM.R | 1377 ++++++-- MixtureMissing-2.0.0/MixtureMissing/R/MStM.R |only MixtureMissing-2.0.0/MixtureMissing/R/MixtureMissing.R | 23 MixtureMissing-2.0.0/MixtureMissing/R/MtM.R | 1622 +++++++-- MixtureMissing-2.0.0/MixtureMissing/R/data.R | 17 MixtureMissing-2.0.0/MixtureMissing/R/utils.R | 587 ++- MixtureMissing-2.0.0/MixtureMissing/data/bankruptcy.rda |only MixtureMissing-2.0.0/MixtureMissing/man/MCNM.Rd | 74 MixtureMissing-2.0.0/MixtureMissing/man/MGHM.Rd |only MixtureMissing-2.0.0/MixtureMissing/man/MNM.Rd | 70 MixtureMissing-2.0.0/MixtureMissing/man/MStM.Rd |only MixtureMissing-2.0.0/MixtureMissing/man/MtM.Rd | 72 MixtureMissing-2.0.0/MixtureMissing/man/bankruptcy.Rd |only MixtureMissing-2.0.0/MixtureMissing/man/cluster_impute.Rd |only MixtureMissing-2.0.0/MixtureMissing/man/evaluation_metrics.Rd | 4 MixtureMissing-2.0.0/MixtureMissing/man/initialize_clusters.Rd | 62 MixtureMissing-2.0.0/MixtureMissing/man/mean_impute.Rd |only MixtureMissing-2.0.0/MixtureMissing/man/summary.MixtureMissing.Rd | 2 29 files changed, 4196 insertions(+), 1451 deletions(-)
More information about MixtureMissing at CRAN
Permanent link
Title: Forest Inventory Estimation and Analysis
Description: A research estimation tool for analysts that work with sample-based
inventory data from the U.S. Department of Agriculture, Forest Service,
Forest Inventory and Analysis (FIA) Program.
Author: Tracey Frescino [aut],
Gretchen Moisen [aut],
Paul Patterson [aut],
Chris Toney [aut],
Grayson White [aut, cre]
Maintainer: Grayson White <graysonwhite13@gmail.com>
Diff between FIESTA versions 3.5.1 dated 2023-01-18 and 3.5.2 dated 2023-04-13
FIESTA-3.5.1/FIESTA/man/ecomap.Rd |only FIESTA-3.5.2/FIESTA/DESCRIPTION | 10 FIESTA-3.5.2/FIESTA/MD5 | 206 +-- FIESTA-3.5.2/FIESTA/NAMESPACE | 4 FIESTA-3.5.2/FIESTA/R/DBgetCSV.R | 11 FIESTA-3.5.2/FIESTA/R/DBgetEvalid.R | 18 FIESTA-3.5.2/FIESTA/R/DBgetPlots.R | 1216 ++++++++++-------- FIESTA-3.5.2/FIESTA/R/DBgetStrata.R | 61 FIESTA-3.5.2/FIESTA/R/DBgetXY.R | 124 + FIESTA-3.5.2/FIESTA/R/FIESTA-package.R | 295 ++-- FIESTA-3.5.2/FIESTA/R/check.estdata.R | 10 FIESTA-3.5.2/FIESTA/R/check.popdataCHNG.R |only FIESTA-3.5.2/FIESTA/R/check.popdataP2VEG.R | 102 - FIESTA-3.5.2/FIESTA/R/check.popdataPLT.R | 19 FIESTA-3.5.2/FIESTA/R/check.popdataVOL.R | 2 FIESTA-3.5.2/FIESTA/R/check.rowcol.R | 27 FIESTA-3.5.2/FIESTA/R/check.titles.R | 3 FIESTA-3.5.2/FIESTA/R/datBarplot.R | 21 FIESTA-3.5.2/FIESTA/R/datSumCond.R | 224 ++- FIESTA-3.5.2/FIESTA/R/datSumTree.R | 340 ++--- FIESTA-3.5.2/FIESTA/R/datSumTreeDom.R | 194 +- FIESTA-3.5.2/FIESTA/R/dbTables.R | 18 FIESTA-3.5.2/FIESTA/R/modGBarea.R | 84 - FIESTA-3.5.2/FIESTA/R/modGBchng.R |only FIESTA-3.5.2/FIESTA/R/modGBp2veg.R | 24 FIESTA-3.5.2/FIESTA/R/modGBpop.R | 114 - FIESTA-3.5.2/FIESTA/R/modGBratio.R | 20 FIESTA-3.5.2/FIESTA/R/modGBtree.R | 18 FIESTA-3.5.2/FIESTA/R/modMApop.R | 2 FIESTA-3.5.2/FIESTA/R/modSApop.R | 2 FIESTA-3.5.2/FIESTA/R/modWFarea.R |only FIESTA-3.5.2/FIESTA/R/modWFpop.R |only FIESTA-3.5.2/FIESTA/R/modWFtree.R |only FIESTA-3.5.2/FIESTA/R/popTableIDs.R | 8 FIESTA-3.5.2/FIESTA/R/popTables.R | 16 FIESTA-3.5.2/FIESTA/R/spClipPoint.R | 8 FIESTA-3.5.2/FIESTA/R/spClipPoly.R | 13 FIESTA-3.5.2/FIESTA/R/spClipRast.R | 40 FIESTA-3.5.2/FIESTA/R/spExportSpatial.R | 19 FIESTA-3.5.2/FIESTA/R/spExtractPoly.R | 8 FIESTA-3.5.2/FIESTA/R/spExtractRast.R | 6 FIESTA-3.5.2/FIESTA/R/spGetAuxiliary.R | 5 FIESTA-3.5.2/FIESTA/R/spGetEstUnit.R | 6 FIESTA-3.5.2/FIESTA/R/spGetPlots.R | 129 + FIESTA-3.5.2/FIESTA/R/spGetSAdoms.R | 4 FIESTA-3.5.2/FIESTA/R/spGetStates.R | 8 FIESTA-3.5.2/FIESTA/R/spGetStrata.R | 4 FIESTA-3.5.2/FIESTA/R/spGetXY.R | 74 - FIESTA-3.5.2/FIESTA/R/spPoly2Rast.R | 7 FIESTA-3.5.2/FIESTA/R/spReprojectRaster.R | 10 FIESTA-3.5.2/FIESTA/R/spReprojectVector.R | 2 FIESTA-3.5.2/FIESTA/R/spUnionPoly.R | 8 FIESTA-3.5.2/FIESTA/R/spZonalRast.R | 4 FIESTA-3.5.2/FIESTA/data/WYp2veg_subp_structure.rda |only FIESTA-3.5.2/FIESTA/data/WYp2veg_subplot_spp.rda |only FIESTA-3.5.2/FIESTA/data/WYsubp_cond.rda |only FIESTA-3.5.2/FIESTA/data/WYsubplot.rda |only FIESTA-3.5.2/FIESTA/inst/CITATION | 23 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_GB.html | 282 ++-- FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_MA.R | 33 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_MA.Rmd | 35 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_MA.html | 55 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_PB.html | 8 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_SA.R | 39 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_SA.Rmd | 41 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_SA.html | 50 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_dat.R | 4 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_dat.Rmd | 8 FIESTA-3.5.2/FIESTA/inst/doc/FIESTA_tutorial_dat.html | 1162 ++++++++--------- FIESTA-3.5.2/FIESTA/man/DBgetEvalid.Rd | 2 FIESTA-3.5.2/FIESTA/man/DBgetPlots.Rd | 86 - FIESTA-3.5.2/FIESTA/man/DBgetStrata.Rd | 13 FIESTA-3.5.2/FIESTA/man/DBgetXY.Rd | 4 FIESTA-3.5.2/FIESTA/man/FIESTA-package.Rd | 32 FIESTA-3.5.2/FIESTA/man/WYcond.Rd | 17 FIESTA-3.5.2/FIESTA/man/WYp2veg_subp_structure.Rd |only FIESTA-3.5.2/FIESTA/man/WYp2veg_subplot_spp.Rd |only FIESTA-3.5.2/FIESTA/man/WYplt.Rd | 18 FIESTA-3.5.2/FIESTA/man/WYpltassgn.Rd | 18 FIESTA-3.5.2/FIESTA/man/WYseed.Rd | 17 FIESTA-3.5.2/FIESTA/man/WYstratalut.Rd | 21 FIESTA-3.5.2/FIESTA/man/WYsubp_cond.Rd |only FIESTA-3.5.2/FIESTA/man/WYsubplot.Rd |only FIESTA-3.5.2/FIESTA/man/WYtree.Rd | 17 FIESTA-3.5.2/FIESTA/man/WYunitarea.Rd | 17 FIESTA-3.5.2/FIESTA/man/datSumCond.Rd | 27 FIESTA-3.5.2/FIESTA/man/datSumTree.Rd | 45 FIESTA-3.5.2/FIESTA/man/datSumTreeDom.Rd | 25 FIESTA-3.5.2/FIESTA/man/modGBchng.Rd |only FIESTA-3.5.2/FIESTA/man/modWFarea.Rd |only FIESTA-3.5.2/FIESTA/man/modWFpop.Rd |only FIESTA-3.5.2/FIESTA/man/modWFtree.Rd |only FIESTA-3.5.2/FIESTA/man/popTableIDs.Rd | 8 FIESTA-3.5.2/FIESTA/man/popTables.Rd | 16 FIESTA-3.5.2/FIESTA/man/spClipPoint.Rd | 4 FIESTA-3.5.2/FIESTA/man/spClipPoly.Rd | 13 FIESTA-3.5.2/FIESTA/man/spClipRast.Rd | 18 FIESTA-3.5.2/FIESTA/man/spExtractPoly.Rd | 6 FIESTA-3.5.2/FIESTA/man/spExtractRast.Rd | 4 FIESTA-3.5.2/FIESTA/man/spGetAuxiliary.Rd | 4 FIESTA-3.5.2/FIESTA/man/spGetEstUnit.Rd | 6 FIESTA-3.5.2/FIESTA/man/spGetPlots.Rd | 28 FIESTA-3.5.2/FIESTA/man/spGetSAdoms.Rd | 4 FIESTA-3.5.2/FIESTA/man/spGetStrata.Rd | 4 FIESTA-3.5.2/FIESTA/man/spGetXY.Rd | 2 FIESTA-3.5.2/FIESTA/man/spPoly2Rast.Rd | 7 FIESTA-3.5.2/FIESTA/man/spReprojectRaster.Rd | 10 FIESTA-3.5.2/FIESTA/man/spReprojectVector.Rd | 2 FIESTA-3.5.2/FIESTA/man/spUnionPoly.Rd | 8 FIESTA-3.5.2/FIESTA/man/spZonalRast.Rd | 2 FIESTA-3.5.2/FIESTA/vignettes/FIESTA_tutorial_MA.Rmd | 35 FIESTA-3.5.2/FIESTA/vignettes/FIESTA_tutorial_SA.Rmd | 41 FIESTA-3.5.2/FIESTA/vignettes/FIESTA_tutorial_dat.Rmd | 8 113 files changed, 3217 insertions(+), 2660 deletions(-)
Title: Flexible Data Simulation Using the Multivariate Normal
Distribution
Description: This R package can be used to generate artificial data conditionally on pre-specified (simulated or user-defined) relationships between the variables and/or observations. Each observation is drawn from a multivariate Normal distribution where the mean vector and covariance matrix reflect the desired relationships. Outputs can be used to evaluate the performances of variable selection, graphical modelling, or clustering approaches by comparing the true and estimated structures (B Bodinier et al (2021) <arXiv:2106.02521>).
Author: Barbara Bodinier [aut, cre]
Maintainer: Barbara Bodinier <barbara.bodinier@gmail.com>
Diff between fake versions 1.3.0 dated 2022-12-09 and 1.4.0 dated 2023-04-13
DESCRIPTION | 12 - MD5 | 38 ++--- NAMESPACE | 5 NEWS.md | 5 R/goodness_of_fit.R | 4 R/s3_classes.R | 66 ++++++++- R/simulations.R | 321 ++++++++++++++++++++++++++++++++++++++++++++- R/tools.R | 81 +++++++++++ README.md | 12 + build/partial.rdb |binary inst/REFERENCES.bib | 16 ++ inst/WORDLIST | 9 + man/LayeredDAG.Rd |only man/ROC.Rd | 4 man/SimulateAdjacency.Rd | 3 man/SimulateClustering.Rd | 3 man/SimulateComponents.Rd | 3 man/SimulateCorrelation.Rd | 3 man/SimulateGraphical.Rd | 3 man/SimulateRegression.Rd | 3 man/SimulateStructural.Rd |only 21 files changed, 541 insertions(+), 50 deletions(-)
Title: 'parsnip' Engines for Survival Models
Description: Engines for survival models from the 'parsnip' package. These
include parametric models (e.g., Jackson (2016)
<doi:10.18637/jss.v070.i08>), semi-parametric (e.g., Simon et al
(2011) <doi:10.18637/jss.v039.i05>), and tree-based models (e.g.,
Buehlmann and Hothorn (2007) <doi:10.1214/07-STS242>).
Author: Emil Hvitfeldt [aut] ,
Hannah Frick [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hannah Frick <hannah@posit.co>
Diff between censored versions 0.1.1 dated 2022-09-30 and 0.2.0 dated 2023-04-13
censored-0.1.1/censored/man/party_internal.Rd |only censored-0.2.0/censored/DESCRIPTION | 41 censored-0.2.0/censored/LICENSE | 4 censored-0.2.0/censored/MD5 | 108 - censored-0.2.0/censored/NAMESPACE | 9 censored-0.2.0/censored/NEWS.md | 37 censored-0.2.0/censored/R/aaa_survival_prob.R | 288 +++- censored-0.2.0/censored/R/bag_tree-data.R | 23 censored-0.2.0/censored/R/bag_tree-rpart.R | 64 censored-0.2.0/censored/R/boost_tree-data.R | 23 censored-0.2.0/censored/R/boost_tree-mboost.R | 51 censored-0.2.0/censored/R/censored-package.R | 16 censored-0.2.0/censored/R/decision_tree-data.R | 39 censored-0.2.0/censored/R/partykit.R | 119 - censored-0.2.0/censored/R/proportional_hazards-data.R | 65 censored-0.2.0/censored/R/proportional_hazards-glmnet.R | 260 ++- censored-0.2.0/censored/R/proportional_hazards-survival.R | 78 - censored-0.2.0/censored/R/proportional_hazards.R | 32 censored-0.2.0/censored/R/rand_forest-aorsf.R |only censored-0.2.0/censored/R/rand_forest-data.R | 127 + censored-0.2.0/censored/R/survival_reg-data.R | 302 ++++ censored-0.2.0/censored/R/survival_reg-survival.R | 63 censored-0.2.0/censored/R/zzz.R | 4 censored-0.2.0/censored/README.md | 60 censored-0.2.0/censored/man/aorsf_internal.Rd |only censored-0.2.0/censored/man/blackboost_train.Rd | 3 censored-0.2.0/censored/man/censored-package.Rd | 10 censored-0.2.0/censored/man/coxnet_train.Rd | 12 censored-0.2.0/censored/man/figures/lifecycle-archived.svg |only censored-0.2.0/censored/man/figures/lifecycle-defunct.svg |only censored-0.2.0/censored/man/figures/lifecycle-deprecated.svg |only censored-0.2.0/censored/man/figures/lifecycle-experimental.svg |only censored-0.2.0/censored/man/figures/lifecycle-maturing.svg |only censored-0.2.0/censored/man/figures/lifecycle-questioning.svg |only censored-0.2.0/censored/man/figures/lifecycle-soft-deprecated.svg |only censored-0.2.0/censored/man/figures/lifecycle-stable.svg |only censored-0.2.0/censored/man/figures/lifecycle-superseded.svg |only censored-0.2.0/censored/man/figures/logo.png |binary censored-0.2.0/censored/man/survival_prob_coxnet.Rd | 9 censored-0.2.0/censored/man/survival_prob_coxph.Rd | 9 censored-0.2.0/censored/man/survival_prob_mboost.Rd | 8 censored-0.2.0/censored/man/survival_prob_partykit.Rd |only censored-0.2.0/censored/man/survival_prob_survbagg.Rd | 8 censored-0.2.0/censored/man/survival_prob_survreg.Rd | 12 censored-0.2.0/censored/man/survival_time_mboost.Rd | 3 censored-0.2.0/censored/tests/testthat/_snaps/proportional_hazards-glmnet.md | 107 + censored-0.2.0/censored/tests/testthat/_snaps/proportional_hazards-survival.md |only censored-0.2.0/censored/tests/testthat/_snaps/proportional_hazards.md | 2 censored-0.2.0/censored/tests/testthat/_snaps/survival_reg-flexsurvspline.md |only censored-0.2.0/censored/tests/testthat/helper-case-weights.R |only censored-0.2.0/censored/tests/testthat/test-aaa_survival_prob.R |only censored-0.2.0/censored/tests/testthat/test-bag_tree-rpart.R | 162 ++ censored-0.2.0/censored/tests/testthat/test-boost_tree-mboost.R | 109 + censored-0.2.0/censored/tests/testthat/test-decision_tree-partykit.R | 74 - censored-0.2.0/censored/tests/testthat/test-decision_tree-rpart.R | 78 + censored-0.2.0/censored/tests/testthat/test-partykit.R |only censored-0.2.0/censored/tests/testthat/test-proportional_hazards-glmnet.R | 654 +++++++--- censored-0.2.0/censored/tests/testthat/test-proportional_hazards-survival.R | 497 +++++-- censored-0.2.0/censored/tests/testthat/test-proportional_hazards.R | 2 censored-0.2.0/censored/tests/testthat/test-rand_forest-aorsf.R |only censored-0.2.0/censored/tests/testthat/test-rand_forest-partykit.R | 77 + censored-0.2.0/censored/tests/testthat/test-survival_reg-flexsurv.R | 262 +++- censored-0.2.0/censored/tests/testthat/test-survival_reg-flexsurvspline.R |only censored-0.2.0/censored/tests/testthat/test-survival_reg-survival.R | 142 ++ censored-0.2.0/censored/tests/testthat/test-survival_reg.R | 4 65 files changed, 3070 insertions(+), 987 deletions(-)
Title: Tools for Working with Recurrence Rules
Description: Provides tools for defining recurrence rules and recurrence
sets. Recurrence rules are a programmatic way to define a recurring
event, like the first Monday of December. Multiple recurrence rules
can be combined into larger recurrence sets. A full holiday and
calendar interface is also provided that can generate holidays within
a particular year, can detect if a date is a holiday, can respect
holiday observance rules, and allows for custom holidays.
Author: Davis Vaughan [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>
Diff between almanac versions 0.1.1 dated 2020-05-28 and 1.0.0 dated 2023-04-13
almanac-0.1.1/almanac/R/compat-purrr.R |only almanac-0.1.1/almanac/R/conditions.R |only almanac-0.1.1/almanac/R/months.R |only almanac-0.1.1/almanac/R/rbundle-add.R |only almanac-0.1.1/almanac/R/rbundle-set.R |only almanac-0.1.1/almanac/R/rbundle.R |only almanac-0.1.1/almanac/R/recur-on-mday.R |only almanac-0.1.1/almanac/R/recur-on-wday.R |only almanac-0.1.1/almanac/R/recur-on-yday.R |only almanac-0.1.1/almanac/R/recur-on-ymonth.R |only almanac-0.1.1/almanac/R/recur-on-yweek.R |only almanac-0.1.1/almanac/R/rintersect.R |only almanac-0.1.1/almanac/R/rsetdiff.R |only almanac-0.1.1/almanac/R/runion.R |only almanac-0.1.1/almanac/man/new-rbundle-set.Rd |only almanac-0.1.1/almanac/man/new_rbundle.Rd |only almanac-0.1.1/almanac/man/rbundle-add.Rd |only almanac-0.1.1/almanac/man/rbundle-set.Rd |only almanac-0.1.1/almanac/man/recur_on_mday.Rd |only almanac-0.1.1/almanac/man/recur_on_wday.Rd |only almanac-0.1.1/almanac/man/recur_on_yday.Rd |only almanac-0.1.1/almanac/man/recur_on_ymonth.Rd |only almanac-0.1.1/almanac/man/recur_on_yweek.Rd |only almanac-0.1.1/almanac/tests/testthat/helper-s3.R |only almanac-0.1.1/almanac/tests/testthat/output |only almanac-0.1.1/almanac/tests/testthat/test-rbundle-add.R |only almanac-0.1.1/almanac/tests/testthat/test-rbundle.R |only almanac-0.1.1/almanac/tests/testthat/test-recur-on-mday.R |only almanac-0.1.1/almanac/tests/testthat/test-recur-on-wday.R |only almanac-0.1.1/almanac/tests/testthat/test-recur-on-yday.R |only almanac-0.1.1/almanac/tests/testthat/test-recur-on-ymonth.R |only almanac-0.1.1/almanac/tests/testthat/test-recur-on-yweek.R |only almanac-0.1.1/almanac/tests/testthat/test-rintersect.R |only almanac-0.1.1/almanac/tests/testthat/test-rsetdiff.R |only almanac-0.1.1/almanac/tests/testthat/test-runion.R |only almanac-1.0.0/almanac/DESCRIPTION | 49 almanac-1.0.0/almanac/LICENSE | 4 almanac-1.0.0/almanac/MD5 | 311 ++-- almanac-1.0.0/almanac/NAMESPACE | 91 - almanac-1.0.0/almanac/NEWS.md | 105 + almanac-1.0.0/almanac/R/aaa.R | 3 almanac-1.0.0/almanac/R/adjustments.R | 14 almanac-1.0.0/almanac/R/alma-events.R | 44 almanac-1.0.0/almanac/R/alma-in.R | 12 almanac-1.0.0/almanac/R/alma-next.R | 33 almanac-1.0.0/almanac/R/alma-search.R | 24 almanac-1.0.0/almanac/R/alma-seq.R | 23 almanac-1.0.0/almanac/R/alma-step.R | 10 almanac-1.0.0/almanac/R/almanac-deprecated.R |only almanac-1.0.0/almanac/R/cache-rcalendar.R |only almanac-1.0.0/almanac/R/cache-rintersect.R | 2 almanac-1.0.0/almanac/R/cache-rsetdiff.R | 6 almanac-1.0.0/almanac/R/cache-runion.R | 4 almanac-1.0.0/almanac/R/calendars.R |only almanac-1.0.0/almanac/R/conversion.R | 74 almanac-1.0.0/almanac/R/defaults.R |only almanac-1.0.0/almanac/R/holidays.R |only almanac-1.0.0/almanac/R/import-standalone-obj-type.R |only almanac-1.0.0/almanac/R/import-standalone-purrr.R |only almanac-1.0.0/almanac/R/import-standalone-types-check.R |only almanac-1.0.0/almanac/R/radjusted.R | 58 almanac-1.0.0/almanac/R/rcalendar.R |only almanac-1.0.0/almanac/R/rcustom.R |only almanac-1.0.0/almanac/R/recur-for-count.R | 25 almanac-1.0.0/almanac/R/recur-on-day-of-month.R |only almanac-1.0.0/almanac/R/recur-on-day-of-week.R |only almanac-1.0.0/almanac/R/recur-on-day-of-year.R |only almanac-1.0.0/almanac/R/recur-on-easter.R | 65 almanac-1.0.0/almanac/R/recur-on-interval.R | 21 almanac-1.0.0/almanac/R/recur-on-month-of-year.R |only almanac-1.0.0/almanac/R/recur-on-position.R | 33 almanac-1.0.0/almanac/R/recur-on-week-of-year.R |only almanac-1.0.0/almanac/R/recur-with-week-start.R | 25 almanac-1.0.0/almanac/R/rholiday.R |only almanac-1.0.0/almanac/R/roffset.R |only almanac-1.0.0/almanac/R/rrule-print.R | 186 -- almanac-1.0.0/almanac/R/rrule.R | 123 - almanac-1.0.0/almanac/R/rschedule.R | 46 almanac-1.0.0/almanac/R/rset.R |only almanac-1.0.0/almanac/R/stepper.R | 29 almanac-1.0.0/almanac/R/utils.R | 263 ++- almanac-1.0.0/almanac/README.md | 170 +- almanac-1.0.0/almanac/build/vignette.rds |binary almanac-1.0.0/almanac/inst/doc/adjust-and-shift.R | 4 almanac-1.0.0/almanac/inst/doc/adjust-and-shift.Rmd | 14 almanac-1.0.0/almanac/inst/doc/adjust-and-shift.html | 418 +++-- almanac-1.0.0/almanac/inst/doc/almanac.R | 27 almanac-1.0.0/almanac/inst/doc/almanac.Rmd | 49 almanac-1.0.0/almanac/inst/doc/almanac.html | 459 +++-- almanac-1.0.0/almanac/inst/doc/holidays-calendars.R |only almanac-1.0.0/almanac/inst/doc/holidays-calendars.Rmd |only almanac-1.0.0/almanac/inst/doc/holidays-calendars.html |only almanac-1.0.0/almanac/inst/doc/icalendar.R | 70 almanac-1.0.0/almanac/inst/doc/icalendar.Rmd | 78 - almanac-1.0.0/almanac/inst/doc/icalendar.html | 771 +++++----- almanac-1.0.0/almanac/inst/doc/quarterly.R | 111 - almanac-1.0.0/almanac/inst/doc/quarterly.Rmd | 123 - almanac-1.0.0/almanac/inst/doc/quarterly.html | 505 +++--- almanac-1.0.0/almanac/inst/js/rrule.js | 66 almanac-1.0.0/almanac/man/adjustments.Rd | 2 almanac-1.0.0/almanac/man/alma_events.Rd | 21 almanac-1.0.0/almanac/man/alma_in.Rd | 12 almanac-1.0.0/almanac/man/alma_next.Rd | 10 almanac-1.0.0/almanac/man/alma_search.Rd | 10 almanac-1.0.0/almanac/man/alma_seq.Rd | 2 almanac-1.0.0/almanac/man/alma_step.Rd | 10 almanac-1.0.0/almanac/man/almanac-defaults.Rd |only almanac-1.0.0/almanac/man/almanac-package.Rd | 12 almanac-1.0.0/almanac/man/cal_events.Rd |only almanac-1.0.0/almanac/man/cal_match.Rd |only almanac-1.0.0/almanac/man/cal_names.Rd |only almanac-1.0.0/almanac/man/cal_us_federal.Rd |only almanac-1.0.0/almanac/man/calendar-add-remove.Rd |only almanac-1.0.0/almanac/man/calendar-locations.Rd |only almanac-1.0.0/almanac/man/deprecated-recur.Rd |only almanac-1.0.0/almanac/man/figures |only almanac-1.0.0/almanac/man/holiday-utilities.Rd |only almanac-1.0.0/almanac/man/holidays.Rd |only almanac-1.0.0/almanac/man/new_rschedule.Rd | 2 almanac-1.0.0/almanac/man/radjusted.Rd | 6 almanac-1.0.0/almanac/man/rcalendar.Rd |only almanac-1.0.0/almanac/man/rcustom.Rd |only almanac-1.0.0/almanac/man/recur_for_count.Rd | 7 almanac-1.0.0/almanac/man/recur_on_day_of_month.Rd |only almanac-1.0.0/almanac/man/recur_on_day_of_week.Rd |only almanac-1.0.0/almanac/man/recur_on_day_of_year.Rd |only almanac-1.0.0/almanac/man/recur_on_easter.Rd | 34 almanac-1.0.0/almanac/man/recur_on_interval.Rd | 6 almanac-1.0.0/almanac/man/recur_on_month_of_year.Rd |only almanac-1.0.0/almanac/man/recur_on_position.Rd | 2 almanac-1.0.0/almanac/man/recur_on_week_of_year.Rd |only almanac-1.0.0/almanac/man/recur_with_week_start.Rd | 10 almanac-1.0.0/almanac/man/rholiday.Rd |only almanac-1.0.0/almanac/man/roffset.Rd |only almanac-1.0.0/almanac/man/rrule.Rd | 19 almanac-1.0.0/almanac/man/rset-add.Rd |only almanac-1.0.0/almanac/man/rset.Rd |only almanac-1.0.0/almanac/man/stepper.Rd | 16 almanac-1.0.0/almanac/src/alma-next.cc | 77 almanac-1.0.0/almanac/src/alma-next.h | 3 almanac-1.0.0/almanac/src/exports.cc | 10 almanac-1.0.0/almanac/src/exports.h | 2 almanac-1.0.0/almanac/src/init.cc | 2 almanac-1.0.0/almanac/src/r.h | 1 almanac-1.0.0/almanac/tests/testthat.R | 8 almanac-1.0.0/almanac/tests/testthat/_snaps |only almanac-1.0.0/almanac/tests/testthat/helper-months.R |only almanac-1.0.0/almanac/tests/testthat/test-adjustments.R | 21 almanac-1.0.0/almanac/tests/testthat/test-alma-events.R | 24 almanac-1.0.0/almanac/tests/testthat/test-alma-next.R | 4 almanac-1.0.0/almanac/tests/testthat/test-alma-search.R | 8 almanac-1.0.0/almanac/tests/testthat/test-alma-seq.R | 12 almanac-1.0.0/almanac/tests/testthat/test-alma-step.R | 11 almanac-1.0.0/almanac/tests/testthat/test-almanac-deprecated.R |only almanac-1.0.0/almanac/tests/testthat/test-calendars.R |only almanac-1.0.0/almanac/tests/testthat/test-holidays.R |only almanac-1.0.0/almanac/tests/testthat/test-misc-cache.R | 12 almanac-1.0.0/almanac/tests/testthat/test-misc-quarterly.R | 92 - almanac-1.0.0/almanac/tests/testthat/test-months.R | 10 almanac-1.0.0/almanac/tests/testthat/test-radjusted.R | 28 almanac-1.0.0/almanac/tests/testthat/test-rcalendar.R |only almanac-1.0.0/almanac/tests/testthat/test-rcustom.R |only almanac-1.0.0/almanac/tests/testthat/test-recur-for-count.R | 23 almanac-1.0.0/almanac/tests/testthat/test-recur-on-day-of-month.R |only almanac-1.0.0/almanac/tests/testthat/test-recur-on-day-of-week.R |only almanac-1.0.0/almanac/tests/testthat/test-recur-on-day-of-year.R |only almanac-1.0.0/almanac/tests/testthat/test-recur-on-easter.R | 48 almanac-1.0.0/almanac/tests/testthat/test-recur-on-interval.R | 12 almanac-1.0.0/almanac/tests/testthat/test-recur-on-month-of-year.R |only almanac-1.0.0/almanac/tests/testthat/test-recur-on-position.R | 61 almanac-1.0.0/almanac/tests/testthat/test-recur-on-week-of-year.R |only almanac-1.0.0/almanac/tests/testthat/test-rholiday.R |only almanac-1.0.0/almanac/tests/testthat/test-roffset.R |only almanac-1.0.0/almanac/tests/testthat/test-rrule-print.R | 41 almanac-1.0.0/almanac/tests/testthat/test-rrule.R | 42 almanac-1.0.0/almanac/tests/testthat/test-rschedule.R | 18 almanac-1.0.0/almanac/tests/testthat/test-rset.R |only almanac-1.0.0/almanac/tests/testthat/test-stepper.R | 111 + almanac-1.0.0/almanac/tests/testthat/test-vec-cast-date.R | 17 almanac-1.0.0/almanac/vignettes/adjust-and-shift.Rmd | 14 almanac-1.0.0/almanac/vignettes/almanac.Rmd | 49 almanac-1.0.0/almanac/vignettes/holidays-calendars.Rmd |only almanac-1.0.0/almanac/vignettes/icalendar.Rmd | 78 - almanac-1.0.0/almanac/vignettes/quarterly.Rmd | 123 - 184 files changed, 3360 insertions(+), 2331 deletions(-)
Title: Spatial Dynamic Panel Data Modeling
Description: Spatial model calculation for static and dynamic panel data models, weights matrix creation and Bayesian model comparison.
Bayesian model comparison methods were described by 'LeSage' (2014) <doi:10.1016/j.spasta.2014.02.002>.
The 'Lee'-'Yu' transformation approach is described in 'Yu', 'De Jong' and 'Lee' (2008) <doi:10.1016/j.jeconom.2008.08.002>, 'Lee' and 'Yu' (2010) <doi:10.1016/j.jeconom.2009.08.001> and 'Lee' and 'Yu' (2010) <doi:10.1017/S0266466609100099>.
Author: Rozeta Simonovska [aut, cre]
Maintainer: Rozeta Simonovska <simonovska.r@gmail.com>
Diff between SDPDmod versions 0.0.1 dated 2022-12-12 and 0.0.2 dated 2023-04-13
DESCRIPTION | 6 - MD5 | 78 +++++++-------- NAMESPACE | 60 ++++++----- NEWS.md | 7 - R/DDistMat.R | 4 R/DistWMat.R | 11 +- R/InvDistMat.R | 2 R/SDPDm.R | 137 ++++++++++++++++++-------- R/SIG_OMG.R | 8 - R/SharedBMat.R | 32 ++++-- R/blmpSDPD.R | 105 +++++++++++++------- R/demeaning.R | 20 +++ R/eignor.R | 2 R/feffects.R | 22 ++-- R/impactsSDPDm.R | 35 ++++-- R/isrownor.R | 4 R/mOrdNbr.R | 22 ++-- R/rownor.R | 3 R/summary.SDPDm.R | 20 ++- R/summary.impactsSDPDm.R |only build/vignette.rds |binary data/usa46.rda |binary inst/doc/spatial_matrices.R | 42 +++++--- inst/doc/spatial_matrices.Rmd | 42 +++++--- inst/doc/spatial_matrices.html | 56 ++++++---- inst/doc/spatial_model.R | 20 ++- inst/doc/spatial_model.Rmd | 22 ++-- inst/doc/spatial_model.html | 164 ++++++++++++++++---------------- man/DDistMat.Rd | 86 ++++++++-------- man/DistWMat.Rd | 97 +++++++++--------- man/InvDistMat.Rd | 90 ++++++++--------- man/SDPDm.Rd | 209 ++++++++++++++++++++-------------------- man/SharedBMat.Rd | 62 ++++++------ man/blmpSDPD.Rd | 210 +++++++++++++++++++++-------------------- man/impactsSDPDm.Rd | 73 +++++++------- man/isrownor.Rd | 53 +++++----- man/mOrdNbr.Rd | 81 ++++++++------- man/rownor.Rd | 61 ++++++----- man/summary.impactsSDPDm.Rd |only vignettes/spatial_matrices.Rmd | 42 +++++--- vignettes/spatial_model.Rmd | 22 ++-- 41 files changed, 1136 insertions(+), 874 deletions(-)
Title: Optimal Sample Size and Allocation with a Network Meta-Analysis
Description: A system for calculating the minimum total sample size needed to achieve a prespecified power or the optimal allocation for each treatment group with a fixed total sample size to maximize the power.
Author: Fangshu Ye [aut, cre]
Maintainer: Fangshu Ye <fye@iastate.edu>
Diff between OssaNMA versions 0.1.0 dated 2023-01-17 and 0.1.1 dated 2023-04-13
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/SSS_equal.R | 10 ++-------- R/SSS_unequal.R | 16 ++-------------- inst/doc/Introduction.html | 10 +++++----- 6 files changed, 23 insertions(+), 35 deletions(-)
Title: Power Analysis for Generalised Linear Mixed Models by Simulation
Description: Calculate power for generalised linear mixed models, using
simulation. Designed to work with models fit using the 'lme4' package.
Described in Green and MacLeod, 2016 <doi:10.1111/2041-210X.12504>.
Author: Peter Green [aut, cre] ,
Catriona MacLeod [aut],
Phillip Alday [ctb]
Maintainer: Peter Green <simr.peter@gmail.com>
Diff between simr versions 1.0.6 dated 2022-03-08 and 1.0.7 dated 2023-04-13
DESCRIPTION | 8 +- MD5 | 18 +++--- NAMESPACE | 1 NEWS.md | 6 ++ R/modify.R | 8 ++ R/testLibrary.R | 16 ++--- README.md | 7 +- build/vignette.rds |binary inst/doc/examples.html | 128 ++++++++++++++++++++++++---------------------- inst/doc/fromscratch.html | 124 +++++++++++++++++++++++--------------------- 10 files changed, 172 insertions(+), 144 deletions(-)
Title: Spatial Data Framework for ggplot2
Description: Spatial data plus the power of the ggplot2 framework means easier mapping when input
data are already in the form of spatial objects.
Author: Dewey Dunnington [aut, cre] ,
Brent Thorne [ctb] ,
Diego Hernangomez [ctb]
Maintainer: Dewey Dunnington <dewey@fishandwhistle.net>
Diff between ggspatial versions 1.1.7 dated 2022-11-24 and 1.1.8 dated 2023-04-13
DESCRIPTION | 8 ++++---- MD5 | 10 +++++++--- NEWS.md | 4 ++++ R/layer-spatial.R | 2 +- tests/testthat/rosm.cache |only 5 files changed, 16 insertions(+), 8 deletions(-)
Title: Item Response Theory Modeling and Scoring for Judgment Data
Description: Psychometric analysis and scoring of judgment data using polytomous Item-Response Theory (IRT) models, as described in Myszkowski and Storme (2019) <doi:10.1037/aca0000225> and Myszkowski (2021) <doi:10.1037/aca0000287>. A function is used to automatically compare and select models, as well as to present a variety of model-based statistics. Plotting functions are used to present category curves, as well as information, reliability and standard error functions.
Author: Nils Myszkowski [aut, cre]
Maintainer: Nils Myszkowski <nilsmyszkowskiscience@gmail.com>
Diff between jrt versions 1.1.1 dated 2022-10-08 and 1.1.2 dated 2023-04-13
DESCRIPTION | 8 - MD5 | 22 ++-- NEWS.md | 5 R/jrt.R | 33 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 5 inst/doc/my-vignette.R | 6 - inst/doc/my-vignette.Rmd | 20 +-- inst/doc/my-vignette.html | 242 +++++++++++++++++++++++----------------------- man/jrt.Rd | 6 - vignettes/my-vignette.Rmd | 20 +-- 12 files changed, 191 insertions(+), 176 deletions(-)
Title: Chronological Bayesian Models Integrating Optically Stimulated
Luminescence and Radiocarbon Age Dating
Description: Bayesian analysis of luminescence data and C-14 age estimates. Bayesian models are based on the following publications: Combes, B. & Philippe, A. (2017) <doi:10.1016/j.quageo.2017.02.003> and Combes et al (2015) <doi:10.1016/j.quageo.2015.04.001>. This includes, amongst others, data import, export, application of age models and palaeodose model.
Author: Claire Christophe [aut],
Anne Philippe [aut, cre] ,
Sebastian Kreutzer [aut] ,
Guillaume Guerin [aut] ,
Frederik Harly Baumgarten [aut]
Maintainer: Anne Philippe <anne.philippe@univ-nantes.fr>
Diff between BayLum versions 0.2.1 dated 2022-02-21 and 0.3.1 dated 2023-04-13
DESCRIPTION | 31 MD5 | 85 +- NAMESPACE | 1 NEWS.md | 252 +----- R/AgeC14_Computation.R | 57 - R/AgeS_Computation.R | 902 +++++++++++++++--------- R/Age_Computation.R | 2 R/Age_OSLC14.R | 1049 +++++++++++++++++------------ R/Generate_DataFile.R | 22 R/Generate_DataFile_MG.R | 80 +- R/combine_DataFiles.R | 2 R/create_ThetaMatrix.R | 29 R/plot_Ages.R | 241 ++++-- R/plot_MCMC.R | 31 R/plot_Scatterplots.R | 31 R/write_BayLumFiles.R |only README.md | 10 build/partial.rdb |binary build/vignette.rds |binary inst/doc/BayLum.html | 766 ++++++++++++++------- man/AgeC14_Computation.Rd | 50 - man/AgeS_Computation.Rd | 137 ++- man/Age_Computation.Rd | 4 man/Age_OSLC14.Rd | 64 + man/Generate_DataFile.Rd | 18 man/Generate_DataFile_MG.Rd | 59 - man/LT_RegenDose.Rd | 2 man/Palaeodose_Computation.Rd | 2 man/SCMatrix.Rd | 2 man/SC_Ordered.Rd | 2 man/combine_DataFiles.Rd | 4 man/create_FolderTemplates.Rd | 2 man/create_ThetaMatrix.Rd | 18 man/plot_Ages.Rd | 24 man/plot_MCMC.Rd | 8 man/plot_Scatterplots.Rd | 16 man/write_BayLumFiles.Rd |only tests/testthat/test_AgeS_Computation.R | 93 ++ tests/testthat/test_Age_OSLC14.R | 17 tests/testthat/test_BayLumFiles.R |only tests/testthat/test_Generate_DataFile_MG.R | 12 tests/testthat/test_create_ThetaMatrix.R | 15 tests/testthat/test_plot_Ages.R | 7 tests/testthat/test_plot_MCMC.R | 4 vignettes/BayLum.Rmd | 52 - 45 files changed, 2523 insertions(+), 1680 deletions(-)
Title: Measuring the Power in Voting Systems
Description: This R package allows the determination of some distributions of the voters' power when passing laws in weighted voting situations.
Author: Livino M. Armijos-Toro [aut],
Jose M. Alonso-Meijide [aut],
Manuel A. Mosquera [aut],
Alejandro Saavedra-Nieves [aut, cre]
Maintainer: Alejandro Saavedra-Nieves <alejandro.saavedra.nieves@gmail.com>
Diff between powerindexR versions 1.0 dated 2023-04-03 and 1.0.1 dated 2023-04-13
DESCRIPTION | 10 +++++++--- MD5 | 22 +++++++++++----------- build/partial.rdb |binary man/MWC.Rd | 2 +- man/QMWC.Rd | 2 +- man/pi.banzhaf.Rd | 3 +-- man/pi.colomermartinez.Rd | 2 +- man/pi.johnston.Rd | 2 +- man/pi.johnstoncolomermartinez.Rd | 2 +- man/pi.shapley.Rd | 3 +-- man/powerindex.Rd | 5 +---- man/powerindexR-package.Rd | 7 +++---- 12 files changed, 29 insertions(+), 31 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2015-09-21 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-26 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-19 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-08 2.0.7-0
2019-02-05 2.0.6-1
2017-11-19 1.1.0-1
2017-06-16 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-09 0.9.9-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-17 1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-21 1.2.3
2023-03-16 1.2.2
2023-03-01 1.2.1
2023-02-21 1.2.0
2022-12-07 1.0.0
Title: Convert 'sjPlot' HTML-Tables to R 'data.frame'
Description: A small set of helper functions to convert 'sjPlot'
HTML-tables to R data.frame objects / knitr::kable-tables.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between sjtable2df versions 0.0.2 dated 2022-06-22 and 0.0.3 dated 2023-04-13
sjtable2df-0.0.2/sjtable2df/inst/doc/Overview.R |only sjtable2df-0.0.2/sjtable2df/inst/doc/Overview.Rmd |only sjtable2df-0.0.2/sjtable2df/inst/doc/Overview.html |only sjtable2df-0.0.2/sjtable2df/vignettes/Overview.Rmd |only sjtable2df-0.0.3/sjtable2df/DESCRIPTION | 14 +- sjtable2df-0.0.3/sjtable2df/MD5 | 27 ++-- sjtable2df-0.0.3/sjtable2df/R/get_xtab_summary.R | 5 sjtable2df-0.0.3/sjtable2df/R/mtab2df.R | 48 ++++++- sjtable2df-0.0.3/sjtable2df/R/utf8_replacements.R | 10 - sjtable2df-0.0.3/sjtable2df/R/xtab2df.R | 9 - sjtable2df-0.0.3/sjtable2df/R/xtab_utils.R | 4 sjtable2df-0.0.3/sjtable2df/R/zzz.R |only sjtable2df-0.0.3/sjtable2df/build/vignette.rds |binary sjtable2df-0.0.3/sjtable2df/inst/doc/sjtable2df_overview.R |only sjtable2df-0.0.3/sjtable2df/inst/doc/sjtable2df_overview.Rmd |only sjtable2df-0.0.3/sjtable2df/inst/doc/sjtable2df_overview.html |only sjtable2df-0.0.3/sjtable2df/tests/testthat/_snaps/mtab2df.md | 2 sjtable2df-0.0.3/sjtable2df/tests/testthat/test-mtab2df.R | 62 ++++++++++ sjtable2df-0.0.3/sjtable2df/vignettes/sjtable2df_overview.Rmd |only 19 files changed, 143 insertions(+), 38 deletions(-)
Title: Regression Models with Break-Points / Change-Points (with
Possibly Random Effects) Estimation
Description: Given a regression model, segmented `updates' it by adding one or more segmented
(i.e., piece-wise linear) relationships. Several variables with multiple breakpoints are allowed. The estimation method is discussed in Muggeo (2003, <doi:10.1002/sim.1545>) and
illustrated in Muggeo (2008, <https://www.r-project.org/doc/Rnews/Rnews_2008-1.pdf>). An approach for hypothesis testing is presented
in Muggeo (2016, <doi:10.1080/00949655.2016.1149855>), and interval estimation for the breakpoint is discussed in Muggeo (2017, <doi:10.1111/anzs.12200>).
Segmented mixed models, i.e. random effects in the change point, are discussed in
in Muggeo (2014, <doi:10.1177/1471082X13504721>).
Author: Vito M. R. Muggeo [aut, cre]
Maintainer: Vito M. R. Muggeo <vito.muggeo@unipa.it>
Diff between segmented versions 1.6-3 dated 2023-03-26 and 1.6-4 dated 2023-04-13
segmented-1.6-3/segmented/R/selgmented.r |only segmented-1.6-4/segmented/DESCRIPTION | 8 segmented-1.6-4/segmented/MD5 | 32 segmented-1.6-4/segmented/NAMESPACE | 110 +-- segmented-1.6-4/segmented/NEWS | 18 segmented-1.6-4/segmented/R/plot.segmented.R | 658 +++++++++----------- segmented-1.6-4/segmented/R/plot.segmented.lme.r | 246 ++++--- segmented-1.6-4/segmented/R/points.segmented.r | 83 +- segmented-1.6-4/segmented/R/predict.segmented.r | 25 segmented-1.6-4/segmented/R/pscore.test.R | 22 segmented-1.6-4/segmented/R/selgmented.R |only segmented-1.6-4/segmented/R/slope.R | 2 segmented-1.6-4/segmented/man/plot.segmented.lme.Rd | 12 segmented-1.6-4/segmented/man/predict.segmented.Rd | 4 segmented-1.6-4/segmented/man/segmented-package.Rd | 162 ++-- segmented-1.6-4/segmented/man/segmented.lme.Rd | 3 segmented-1.6-4/segmented/man/selgmented.Rd | 108 ++- segmented-1.6-4/segmented/man/slope.Rd | 4 18 files changed, 791 insertions(+), 706 deletions(-)
Title: Probability Computations on Pedigrees
Description: An implementation of the Elston-Stewart algorithm for
calculating pedigree likelihoods given genetic marker data (Elston and
Stewart (1971) <doi:10.1159/000152448>). The standard algorithm is
extended to allow inbred founders. 'pedprobr' is part of the 'ped
suite', a collection of packages for pedigree analysis in R. In
particular, 'pedprobr' depends on 'pedtools' for pedigree
manipulations and 'pedmut' for mutation modelling. For more
information, see 'Pedigree Analysis in R' (Vigeland, 2021,
ISBN:9780128244302).
Author: Magnus Dehli Vigeland [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland@medisin.uio.no>
Diff between pedprobr versions 0.7.1 dated 2023-02-13 and 0.8.0 dated 2023-04-13
pedprobr-0.7.1/pedprobr/man/pedprobr.Rd |only pedprobr-0.8.0/pedprobr/DESCRIPTION | 8 - pedprobr-0.8.0/pedprobr/MD5 | 26 +++--- pedprobr-0.8.0/pedprobr/NAMESPACE | 2 pedprobr-0.8.0/pedprobr/NEWS.md | 21 ++++- pedprobr-0.8.0/pedprobr/R/haldane.R |only pedprobr-0.8.0/pedprobr/R/likelihood2.R | 4 pedprobr-0.8.0/pedprobr/R/pedprobr-package.R | 17 +--- pedprobr-0.8.0/pedprobr/R/peel.R | 61 +++++++++------ pedprobr-0.8.0/pedprobr/R/utils.R | 9 -- pedprobr-0.8.0/pedprobr/README.md | 36 ++++---- pedprobr-0.8.0/pedprobr/build/partial.rdb |binary pedprobr-0.8.0/pedprobr/man/figures/README-pedplot-1.png |binary pedprobr-0.8.0/pedprobr/man/haldane.Rd |only pedprobr-0.8.0/pedprobr/man/pedprobr-package.Rd |only pedprobr-0.8.0/pedprobr/tests/testthat/test-mutations.R | 53 +++++++++++++ 16 files changed, 153 insertions(+), 84 deletions(-)
Title: Interface to OGC Web-Services (OWS)
Description: Provides an Interface to Web-Services defined as standards by the Open Geospatial Consortium (OGC), including Web Feature Service
(WFS) for vector data, Web Coverage Service (WCS), Catalogue Service (CSW) for ISO/OGC metadata, Web Processing Service (WPS) for data processes,
and associated standards such as the common web-service specification (OWS) and OGC Filter Encoding. Partial support is provided for the Web Map
Service (WMS). The purpose is to add support for additional OGC service standards such as Web Coverage Processing Service (WCPS), the Sensor
Observation Service (SOS), or even new standard services emerging such OGC API or SensorThings.
Author: Emmanuel Blondel [aut, cre] ,
Alexandre Bennici [ctb] ,
Norbert Billet [ctb]
Maintainer: Emmanuel Blondel <emmanuel.blondel1@gmail.com>
Diff between ows4R versions 0.3-4 dated 2023-03-10 and 0.3-5 dated 2023-04-13
DESCRIPTION | 10 - MD5 | 14 +- NEWS.md | 10 + R/profile.R | 3 README.md | 2 build/vignette.rds |binary inst/doc/csw.html | 307 ++++++++++++++++------------------------------------- inst/doc/wcs.html | 287 +++++++++++++++---------------------------------- 8 files changed, 214 insertions(+), 419 deletions(-)
Title: Auto-Generate Changelog using Conventional Commits
Description: Automatically generate a changelog file (NEWS.md /
CHANGELOG.md) from the git history using conventional commit messages
(<https://www.conventionalcommits.org/en/v1.0.0/>).
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between autonewsmd versions 0.0.5 dated 2023-01-21 and 0.0.6 dated 2023-04-13
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/generate_autonewsmd.R | 2 +- R/init_autonewsmd.R | 7 ++++--- R/write_autonewsmd.R | 6 +++--- 5 files changed, 15 insertions(+), 14 deletions(-)
Title: S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Description: An S3 class with methods for totally ordered indexed
observations. It is particularly aimed at irregular time series
of numeric vectors/matrices and factors. zoo's key design goals
are independence of a particular index/date/time class and
consistency with ts and base R by providing methods to extend
standard generics.
Author: Achim Zeileis [aut, cre] ,
Gabor Grothendieck [aut],
Jeffrey A. Ryan [aut],
Joshua M. Ulrich [ctb],
Felix Andrews [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between zoo versions 1.8-11 dated 2022-09-17 and 1.8-12 dated 2023-04-13
DESCRIPTION | 8 ++++---- MD5 | 40 ++++++++++++++++++++-------------------- NAMESPACE | 5 ++--- NEWS | 16 ++++++++++++++++ R/as.zoo.R | 2 +- R/ggplot2.zoo.R | 12 ++++++++---- R/index2char.R | 2 ++ R/na.approx.R | 2 +- R/window.zoo.R | 10 +++++----- build/vignette.rds |binary inst/CITATION | 29 +++++++++++------------------ inst/doc/zoo-design.pdf |binary inst/doc/zoo-faq.pdf |binary inst/doc/zoo-quickref.pdf |binary inst/doc/zoo-read.pdf |binary inst/doc/zoo.pdf |binary man/ggplot2.zoo.Rd | 23 +++++++++++------------ man/zoo.Rd | 1 + src/coredata.c | 14 +++++++------- src/lag.c | 14 +++++++------- tests/Examples/zoo-Ex.Rout.save | 13 ++++++------- 21 files changed, 102 insertions(+), 89 deletions(-)
Title: Clinical Stroke Research
Description: This is an R-toolbox of custom functions for convenient data management
and analysis in clinical health research and teaching.
The package is mainly collected for personal use, but any use beyond that is encouraged.
This package has migrated functions from 'agdamsbo/daDoctoR', and new functions has been added.
Version follows months and year. See NEWS/Changelog for release notes.
This package includes sampled data from the TALOS trial (Kraglund et al (2018) <doi:10.1161/STROKEAHA.117.020067>).
The win_prob() function is based on work by Zou et al (2022) <doi:10.1161/STROKEAHA.121.037744>.
The age_calc() function is based on work by Becker (2020) <doi:10.18637/jss.v093.i02>.
Author: Andreas Gammelgaard Damsbo [aut, cre]
Maintainer: Andreas Gammelgaard Damsbo <agdamsbo@clin.au.dk>
Diff between stRoke versions 23.1.7 dated 2023-01-24 and 23.4.1 dated 2023-04-13
DESCRIPTION | 12 ++-- MD5 | 50 ++++++++++++------ NAMESPACE | 10 +++ NEWS.md | 33 ++++++++++++ R/ci_plot.R | 8 +- R/contrast_text.R |only R/ds2dd.R |only R/generic_stroke.R | 4 - R/label_select.R | 7 +- R/metadata.R |only R/write_ical.R |only README.md | 14 ++++- build/vignette.rds |binary data/metadata_names.rda |only inst/WORDLIST | 18 ++++++ inst/doc/ds2dd.R |only inst/doc/ds2dd.Rmd |only inst/doc/ds2dd.html |only inst/doc/toolbox.Rmd | 3 - inst/doc/toolbox.html | 98 ++++++++++++++++++------------------ man/ci_plot.Rd | 8 +- man/contrast_text.Rd |only man/ds2dd.Rd |only man/generic_stroke.Rd | 4 - man/label_select.Rd | 7 +- man/metadata_names.Rd |only man/write_ical.Rd |only tests/testthat/test-age_calc.R | 19 ++++-- tests/testthat/test-ci_plot.R | 22 ++++++++ tests/testthat/test-contrast_text.R |only tests/testthat/test-ds2dd.R |only tests/testthat/test-write_ical.R |only vignettes/ds2dd.Rmd |only vignettes/toolbox.Rmd | 3 - 34 files changed, 223 insertions(+), 97 deletions(-)
Title: Stability Assessment of Statistical Learning Methods
Description: Graphical and computational methods that can be used to assess the
stability of results from supervised statistical learning.
Author: Michel Philipp [aut],
Carolin Strobl [aut],
Achim Zeileis [aut, cre] ,
Thomas Rusch [aut],
Kurt Hornik [aut] ,
Lennart Schneider [aut]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between stablelearner versions 0.1-4 dated 2022-03-18 and 0.1-5 dated 2023-04-13
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 5 NEWS.md | 6 R/stabletree-coercion.R | 7 build/partial.rdb |binary build/vignette.rds |binary inst/doc/forests.html | 598 ++++++++++++++++++++++++++++++++---------------- man/stability.Rd | 10 9 files changed, 438 insertions(+), 212 deletions(-)
Title: Nonparametric Preprocessing for Parametric Causal Inference
Description: Selects matched samples of the original treated and
control groups with similar covariate distributions -- can be
used to match exactly on covariates, to match on propensity
scores, or perform a variety of other matching procedures. The
package also implements a series of recommendations offered in
Ho, Imai, King, and Stuart (2007) <DOI:10.1093/pan/mpl013>. (The
'gurobi' package, which is not on CRAN, is optional and comes with
an installation of the Gurobi Optimizer, available at
<https://www.gurobi.com>.)
Author: Daniel Ho [aut] ,
Kosuke Imai [aut] ,
Gary King [aut] ,
Elizabeth Stuart [aut] ,
Alex Whitworth [ctb],
Noah Greifer [cre, aut]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between MatchIt versions 4.5.2 dated 2023-03-22 and 4.5.3 dated 2023-04-13
MatchIt-4.5.2/MatchIt/R/weights.matrix.R |only MatchIt-4.5.2/MatchIt/R/weights.subclass.R |only MatchIt-4.5.3/MatchIt/DESCRIPTION | 11 MatchIt-4.5.3/MatchIt/MD5 | 88 ++--- MatchIt-4.5.3/MatchIt/NEWS.md | 20 + MatchIt-4.5.3/MatchIt/R/add_s.weights.R | 26 - MatchIt-4.5.3/MatchIt/R/aux_functions.R | 291 +++++++++++------ MatchIt-4.5.3/MatchIt/R/discard.R | 102 ++--- MatchIt-4.5.3/MatchIt/R/dist_functions.R | 33 + MatchIt-4.5.3/MatchIt/R/distance2_methods.R | 42 +- MatchIt-4.5.3/MatchIt/R/get_weights_from_mm.R |only MatchIt-4.5.3/MatchIt/R/get_weights_from_subclass.R |only MatchIt-4.5.3/MatchIt/R/input_processing.R | 171 +++++---- MatchIt-4.5.3/MatchIt/R/match.data.R | 66 +-- MatchIt-4.5.3/MatchIt/R/match.qoi.R | 36 +- MatchIt-4.5.3/MatchIt/R/matchit.R | 34 - MatchIt-4.5.3/MatchIt/R/matchit2cardinality.R | 46 +- MatchIt-4.5.3/MatchIt/R/matchit2cem.R | 177 +++++++--- MatchIt-4.5.3/MatchIt/R/matchit2exact.R | 8 MatchIt-4.5.3/MatchIt/R/matchit2full.R | 27 - MatchIt-4.5.3/MatchIt/R/matchit2genetic.R | 48 -- MatchIt-4.5.3/MatchIt/R/matchit2nearest.R | 53 +-- MatchIt-4.5.3/MatchIt/R/matchit2optimal.R | 51 +- MatchIt-4.5.3/MatchIt/R/matchit2quick.R | 33 - MatchIt-4.5.3/MatchIt/R/matchit2subclass.R | 33 - MatchIt-4.5.3/MatchIt/R/plot.matchit.R | 150 ++++---- MatchIt-4.5.3/MatchIt/R/plot.summary.matchit.R | 9 MatchIt-4.5.3/MatchIt/R/rbind.matchdata.R | 7 MatchIt-4.5.3/MatchIt/R/summary.matchit.R | 57 +-- MatchIt-4.5.3/MatchIt/build/MatchIt.pdf |binary MatchIt-4.5.3/MatchIt/build/vignette.rds |binary MatchIt-4.5.3/MatchIt/inst/doc/MatchIt.Rmd | 2 MatchIt-4.5.3/MatchIt/inst/doc/MatchIt.html | 8 MatchIt-4.5.3/MatchIt/inst/doc/assessing-balance.html | 19 - MatchIt-4.5.3/MatchIt/inst/doc/estimating-effects.R | 9 MatchIt-4.5.3/MatchIt/inst/doc/estimating-effects.Rmd | 35 -- MatchIt-4.5.3/MatchIt/inst/doc/estimating-effects.html | 115 +++--- MatchIt-4.5.3/MatchIt/inst/doc/matching-methods.html | 4 MatchIt-4.5.3/MatchIt/inst/doc/sampling-weights.html | 4 MatchIt-4.5.3/MatchIt/man/mahalanobis_dist.Rd | 4 MatchIt-4.5.3/MatchIt/man/match.data.Rd | 10 MatchIt-4.5.3/MatchIt/man/method_cem.Rd | 10 MatchIt-4.5.3/MatchIt/man/method_quick.Rd | 2 MatchIt-4.5.3/MatchIt/src/nn_matchC.cpp | 13 MatchIt-4.5.3/MatchIt/src/nn_matchC_vec.cpp | 24 - MatchIt-4.5.3/MatchIt/vignettes/MatchIt.Rmd | 2 MatchIt-4.5.3/MatchIt/vignettes/estimating-effects.Rmd | 35 -- 47 files changed, 1043 insertions(+), 872 deletions(-)
Title: Rendering Parameterized SQL and Translation to Dialects
Description: A rendering tool for parameterized SQL that also translates into
different SQL dialects. These dialects include 'Microsoft SQL Server', 'Oracle',
'PostgreSql', 'Amazon RedShift', 'Apache Impala', 'IBM Netezza', 'Google BigQuery', 'Microsoft PDW', 'Snowflake',
'Azure Synapse Analytics Dedicated', 'Apache Spark', and 'SQLite'.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between SqlRender versions 1.13.1 dated 2023-03-21 and 1.14.0 dated 2023-04-13
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 16 ++++++++++++++++ inst/csv/replacementPatterns.csv | 15 +++++++++++++-- inst/doc/UsingSqlRender.pdf |binary man/loadRenderTranslateSql.Rd | 6 +++--- tests/testthat/test-translate-oracle.R | 5 +++++ tests/testthat/test-translate-snowflake.R | 5 +++++ tests/testthat/test-translate-spark.R | 28 ++++++++++++++++++++++++++++ 9 files changed, 82 insertions(+), 17 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', and 'SQLite'). Also includes support for
fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or other DB I drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.1.0 dated 2023-03-15 and 6.2.0 dated 2023-04-13
DESCRIPTION | 8 +- MD5 | 46 ++++++++-------- NEWS.md | 19 ++++++ R/Andromeda.R | 3 - R/Connect.R | 10 ++- R/DBI.R | 3 - R/DatabaseConnector.R | 7 -- R/Drivers.R | 45 ++++++++-------- R/HelperFunctions.R | 5 - R/InsertTable.R | 56 ++++++++++++-------- R/RStudio.R | 2 R/Sql.R | 8 +- inst/csv/jarChecksum.txt | 2 inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary inst/java/DatabaseConnector.jar |binary java/org/ohdsi/databaseConnector/BatchedInsert.java | 19 ++++-- java/org/ohdsi/databaseConnector/BatchedQuery.java | 18 +++--- man/DatabaseConnectorConnection-class.Rd | 1 man/connect.Rd | 10 +-- man/createConnectionDetails.Rd | 10 +-- man/downloadJdbcDrivers.Rd | 5 + man/jdbcDrivers.Rd | 7 -- 24 files changed, 156 insertions(+), 128 deletions(-)
More information about DatabaseConnector at CRAN
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Title: Monte Carlo for Regression Effect Sizes
Description: Generates Monte Carlo confidence intervals
for standardized regression coefficients (beta) and other effect sizes,
including multiple correlation, semipartial correlations,
improvement in R-squared, squared partial correlations,
and differences in standardized regression coefficients,
for models fitted by lm().
'betaMC' combines ideas from Monte Carlo confidence intervals for the indirect effect
(Preacher and Selig, 2012 <doi:10.1080/19312458.2012.679848>)
and the sampling covariance matrix of regression coefficients
(Dudgeon, 2017 <doi:10.1007/s11336-017-9563-z>)
to generate confidence intervals effect sizes in regression.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between betaMC versions 1.0.0 dated 2023-01-09 and 1.2.0 dated 2023-04-13
betaMC-1.0.0/betaMC/R/betaMC-beta-ci-dot.R |only betaMC-1.0.0/betaMC/R/betaMC-cov-mvn-dot.R |only betaMC-1.0.0/betaMC/R/betaMC-methods.R |only betaMC-1.0.0/betaMC/R/betaMC-pcci-dot.R |only betaMC-1.0.0/betaMC/R/betaSandwich-acov-mvn-dot.R |only betaMC-1.0.0/betaMC/R/betaSandwich-nas1982.R |only betaMC-1.0.0/betaMC/R/betaSandwich-process-lm-dot.R |only betaMC-1.0.0/betaMC/tests/testthat/test-betaMC-methods.R |only betaMC-1.0.0/betaMC/tests/testthat/test-betaMC-vcov.R |only betaMC-1.2.0/betaMC/DESCRIPTION | 19 betaMC-1.2.0/betaMC/LICENSE | 2 betaMC-1.2.0/betaMC/MD5 | 91 +- betaMC-1.2.0/betaMC/NAMESPACE | 8 betaMC-1.2.0/betaMC/NEWS.md | 13 betaMC-1.2.0/betaMC/R/betaMC-beta-mc.R | 351 +--------- betaMC-1.2.0/betaMC/R/betaMC-ci-dot.R |only betaMC-1.2.0/betaMC/R/betaMC-delta-r-sq-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-diff-beta-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-mc-bias.R |only betaMC-1.2.0/betaMC/R/betaMC-mc-rmse.R |only betaMC-1.2.0/betaMC/R/betaMC-mc-theta-hat-dot.R |only betaMC-1.2.0/betaMC/R/betaMC-mc-var.R |only betaMC-1.2.0/betaMC/R/betaMC-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-methods-beta-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-methods-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-p-cor-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-r-sq-mc.R |only betaMC-1.2.0/betaMC/R/betaMC-s-cor-mc.R |only betaMC-1.2.0/betaMC/R/betaSandwich-acov-hc-dot.R | 3 betaMC-1.2.0/betaMC/R/betaSandwich-acov-sem-inverse-dot.R |only betaMC-1.2.0/betaMC/R/dataSets-nas1982.R |only betaMC-1.2.0/betaMC/R/linearAlgebra-positive-definite-2-test-dot.R |only betaMC-1.2.0/betaMC/R/linearAlgebra-sym-of-vech-dot.R |only betaMC-1.2.0/betaMC/R/nBootstrap-ci-format-dot.R |only betaMC-1.2.0/betaMC/R/nBootstrap-pc-ci-dot.R |only betaMC-1.2.0/betaMC/R/nBootstrap-pc-probs-dot.R |only betaMC-1.2.0/betaMC/R/processLM-process-lm-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-beta-star-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-beta-star-of-rho-dot.R | 37 - betaMC-1.2.0/betaMC/R/strRegression-jacobian-vech-sigma-wrt-theta-dot.R | 112 ++- betaMC-1.2.0/betaMC/R/strRegression-p-cor-sq-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-r-sq-of-sigma-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-s-p-cor-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-sigma-yx-dot.R |only betaMC-1.2.0/betaMC/R/strRegression-theta-index-dot.R | 2 betaMC-1.2.0/betaMC/build/partial.rdb |binary betaMC-1.2.0/betaMC/data/nas1982.rda |binary betaMC-1.2.0/betaMC/inst/CITATION | 53 - betaMC-1.2.0/betaMC/man/BetaMC.Rd | 144 +--- betaMC-1.2.0/betaMC/man/DeltaRSqMC.Rd |only betaMC-1.2.0/betaMC/man/DiffBetaMC.Rd |only betaMC-1.2.0/betaMC/man/MC.Rd |only betaMC-1.2.0/betaMC/man/PCorMC.Rd |only betaMC-1.2.0/betaMC/man/RSqMC.Rd |only betaMC-1.2.0/betaMC/man/SCorMC.Rd |only betaMC-1.2.0/betaMC/man/betaMC-package.Rd | 4 betaMC-1.2.0/betaMC/man/coef.betamc.Rd | 32 betaMC-1.2.0/betaMC/man/confint.betamc.Rd | 30 betaMC-1.2.0/betaMC/man/nas1982.Rd | 2 betaMC-1.2.0/betaMC/man/print.betamc.Rd | 38 - betaMC-1.2.0/betaMC/man/print.mc.Rd |only betaMC-1.2.0/betaMC/man/summary.betamc.Rd | 38 - betaMC-1.2.0/betaMC/man/summary.mc.Rd |only betaMC-1.2.0/betaMC/man/vcov.betamc.Rd | 33 betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-beta-mc-est.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-delta-r-sq-mc-est.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-diff-beta-mc-est.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-mc-fixed-x.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-mc.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-p-cor-mc-est.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-r-sq-mc-est.R |only betaMC-1.2.0/betaMC/tests/testthat/test-betaMC-s-cor-mc-est.R |only 72 files changed, 472 insertions(+), 540 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-04-22 0.1.0
Title: Compositional Data Analysis
Description: Provides functions for the consistent analysis of compositional
data (e.g. portions of substances) and positive numbers (e.g. concentrations)
in the way proposed by J. Aitchison and V. Pawlowsky-Glahn.
Author: K. Gerald van den Boogaart <boogaart@hzdr.de>,
Raimon Tolosana-Delgado, Matevz Bren
Maintainer: K. Gerald van den Boogaart <support@boogaart.de>
Diff between compositions versions 2.0-5 dated 2023-02-04 and 2.0-6 dated 2023-04-13
ChangeLog | 4 DESCRIPTION | 8 MD5 | 26 +- NAMESPACE | 27 +- R/Geostat.R | 2 R/compositions.R | 23 + R/ctests.R | 8 build/partial.rdb |binary build/vignette.rds |binary inst/doc/UsingCompositions.pdf |binary inst/doc/compositions_v2.Rmd | 2 inst/doc/compositions_v2.html | 473 ++++++++--------------------------------- man/segments.Rd | 26 +- vignettes/compositions_v2.Rmd | 2 14 files changed, 173 insertions(+), 428 deletions(-)
More information about WaveletMLbestFL at CRAN
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Title: Fitting Differential Equations to Time Series Data
Description: Use numerical optimization to fit ordinary differential equations (ODEs) to time series data to examine the dynamic relationships between variables or the characteristics of a dynamical system. It can now be used to estimate the parameters of ODEs up to second order, and can also apply to multilevel systems. See <https://github.com/yueqinhu/defit> for details.
Author: Yueqin Hu [aut, cre],
Qingshan Liu [aut]
Maintainer: Yueqin Hu <yueqinhu@bnu.edu.cn>
Diff between deFit versions 0.1.2 dated 2023-02-15 and 0.2.0 dated 2023-04-13
deFit-0.1.2/deFit/R/Slover_BinFirst_func.R |only deFit-0.1.2/deFit/man/Slover_BinFirst_func.Rd |only deFit-0.2.0/deFit/DESCRIPTION | 10 deFit-0.2.0/deFit/MD5 | 44 +- deFit-0.2.0/deFit/NAMESPACE | 1 deFit-0.2.0/deFit/R/AdjustModel_func.R | 23 + deFit-0.2.0/deFit/R/CalcDe_func.R | 20 + deFit-0.2.0/deFit/R/IntiOption_func.R | 28 + deFit-0.2.0/deFit/R/JudgeModel_func.R | 34 +- deFit-0.2.0/deFit/R/PlotDe_func.R | 135 ++++++--- deFit-0.2.0/deFit/R/Solver_BinFirst_func.R |only deFit-0.2.0/deFit/R/Solver_MultiBiFirst_func.R |only deFit-0.2.0/deFit/R/Solver_MultiUniSec_func.R |only deFit-0.2.0/deFit/R/Solver_UniSec_func.R | 129 +++++--- deFit-0.2.0/deFit/R/data.R | 73 +++- deFit-0.2.0/deFit/R/deFit.R | 327 ++++++++++++---------- deFit-0.2.0/deFit/R/scale_within.R |only deFit-0.2.0/deFit/data/example2.rda |binary deFit-0.2.0/deFit/data/example3.rda |only deFit-0.2.0/deFit/man/CalcDe_func.Rd | 5 deFit-0.2.0/deFit/man/PlotDe_func.Rd | 10 deFit-0.2.0/deFit/man/Slover_UniSec_func.Rd | 2 deFit-0.2.0/deFit/man/Solver_BinFirst_func.Rd |only deFit-0.2.0/deFit/man/Solver_MultiBiFirst_func.Rd |only deFit-0.2.0/deFit/man/Solver_MultiUniSec_func.Rd |only deFit-0.2.0/deFit/man/defit.Rd | 63 +++- deFit-0.2.0/deFit/man/example2.Rd | 5 deFit-0.2.0/deFit/man/example3.Rd |only deFit-0.2.0/deFit/man/scale_within.Rd |only 29 files changed, 597 insertions(+), 312 deletions(-)
Title: Perform the Complete Processing of a Set of Proton Nuclear
Magnetic Resonance Spectra
Description: Perform the complete processing of a set of proton nuclear magnetic resonance spectra from the free induction decay (raw data) and based on a processing sequence (macro-command file). An additional file specifies all the spectra to be considered by associating their sample code as well as the levels of experimental factors to which they belong. More detail can be found in Jacob et al. (2017) <doi:10.1007/s11306-017-1178-y>.
Author: Daniel Jacob [cre, aut] ,
Catherine Deborde [ctb],
Marie Lefebvre [ctb]
Maintainer: Daniel Jacob <daniel.jacob@inrae.fr>
Diff between Rnmr1D versions 1.3.0 dated 2021-11-10 and 1.3.2 dated 2023-04-13
DESCRIPTION | 19 MD5 | 36 NAMESPACE | 3 R/RcppExports.R | 16 R/Rnmr.R | 201 +++ R/RnmrTools.R | 294 +++++ R/const.R | 12 R/doProcessing.R | 97 + R/generateMetadata.R | 122 ++ R/ggplotTools.R | 128 ++ inst/doc/Rnmr1D.R | 14 inst/doc/Rnmr1D.Rmd | 32 inst/doc/Rnmr1D.html | 2570 +++++++++++++++++++++++++++++++++++++++------------ man/Spec1rProcpar.Rd | 2 man/doProcessing.Rd | 11 man/setLogFile.Rd | 2 src/RcppExports.cpp | 59 - src/libCspec.cpp | 210 +++- vignettes/Rnmr1D.Rmd | 32 19 files changed, 3077 insertions(+), 783 deletions(-)
Title: Multi-Trait Dissimilarity with more Uniform Contributions
Description: R function gawdis() produces multi-trait dissimilarity with more uniform contributions of different traits. de Bello et al. (2021) <doi:10.1111/2041-210X.13537> presented the approach based on minimizing the differences in the correlation between the dissimilarity of each trait, or groups of traits, and the multi-trait dissimilarity. This is done using either an analytic or a numerical solution, both available in the function.
Author: Francesco de Bello [aut],
Zoltan Botta-Dukat [aut],
Jan Leps [aut],
Pavel Fibich [aut, cre]
Maintainer: Pavel Fibich <pavel.fibich@prf.jcu.cz>
Diff between gawdis versions 0.1.3 dated 2021-05-12 and 0.1.4 dated 2023-04-13
DESCRIPTION | 10 MD5 | 16 - R/gawdis.R | 21 - README.md | 6 build/vignette.rds |binary inst/doc/gawdis.Rmd | 2 inst/doc/gawdis.html | 708 +++++++++++++++++++++++++++++++++++++++------------ man/gawdis.Rd | 4 vignettes/gawdis.Rmd | 2 9 files changed, 577 insertions(+), 192 deletions(-)
Title: Fixed Landscape Inference Method
Description: Likelihood-free inference method for stochastic models.
Uses a deterministic optimizer on simple simulations of the model
that are performed with a prior drawn randomness by applying the inverse transform method.
Is designed to work on its own and also by using the Julia package 'Jflimo'
available on the git page of the project: <https://metabarcoding.org/flimo>.
Author: Sylvain Moinard [aut, cre]
Maintainer: Sylvain Moinard <sylvain.moinard@univ-grenoble-alpes.fr>
Diff between flimo versions 0.1.3 dated 2022-11-12 and 0.1.4 dated 2023-04-13
DESCRIPTION | 8 - MD5 | 39 +++---- NAMESPACE | 2 NEWS.md | 8 + R/functions.R | 229 ++++++++++++++++++++++++++++++-------------- R/zzz.R | 4 inst/doc/Examples.Rmd | 2 inst/doc/Examples.html | 138 +++++++++++++------------- man/check_simulator.Rd | 2 man/flimobjective.Rd | 4 man/flimoptim.Rd | 2 man/flimoptim_Julia.Rd | 2 man/flimoptim_R.Rd | 2 man/julia_load.Rd | 2 man/julia_setup.Rd | 2 man/plot.flimo_result.Rd | 2 man/plot_objective.Rd | 14 +- man/print.flimo_result.Rd | 2 man/sampleQ.Rd |only man/summary.flimo_result.Rd | 2 vignettes/Examples.Rmd | 2 21 files changed, 285 insertions(+), 183 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-17 0.1.2
2022-08-19 0.1.1
2022-08-18 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-03 0.6-7