Title: Minimization Tool for Pharmacokinetic-Pharmacodynamic Data
Analysis
Description: This is a set of minimization tools (maximum likelihood estimation and least square fitting) to solve examples in the Johan Gabrielsson and Dan Weiner's book "Pharmacokinetic and Pharmacodynamic Data Analysis - Concepts and Applications" 5th ed. (ISBN:9198299107). Examples include linear and nonlinear compartmental model, turn-over model, single or multiple dosing bolus/infusion/oral models, allometry, toxicokinetics, reversible metabolism, in-vitro/in-vivo extrapolation, enterohepatic circulation, metabolite modeling, Emax model, inhibitory model, tolerance model, oscillating response model, enantiomer interaction model, effect compartment model, drug-drug interaction model, receptor occupancy model, and rebound phenomena model.
Author: Kyun-Seop Bae [aut]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between wnl versions 0.7.2 dated 2023-03-26 and 0.7.3 dated 2023-04-24
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- R/nlr.R | 16 ++++++++++++++-- R/pProf.R | 6 ++++-- inst/NEWS.Rd | 6 ++++++ inst/doc/wnl-manual.pdf |binary man/nlr.Rd | 2 +- man/pProf.Rd | 5 ++--- 8 files changed, 37 insertions(+), 18 deletions(-)
Title: Detect SDGs and Targets in Text
Description: Identify 17 Sustainable Development Goals and associated 169 targets in text.
Author: Yingjie Li [aut, cre] ,
Veronica Frans [aut] ,
Yongze Song [aut] ,
Meng Cai [aut] ,
Yuqian Zhang [aut] ,
Jianguo Liu [aut]
Maintainer: Yingjie Li <yingjieli.edu@gmail.com>
Diff between SDGdetector versions 2.7.1 dated 2023-02-22 and 2.7.2 dated 2023-04-24
DESCRIPTION | 24 MD5 | 45 NEWS.md | 21 R/SDGdetector.R | 111 R/add_sdg_pattern.R | 72 R/detect_region.R | 80 R/helper_SDG_search_terms.R | 3227 ++++++++++++++++++-------- R/plot_sdg_bar.R | 33 R/plot_sdg_map.R | 74 R/sdg_color.R | 16 R/sdg_icon.R | 26 README.md | 284 +- inst/CITATION | 24 man/SDGdetector.Rd | 8 man/add_sdg_pattern.Rd | 4 man/func_OR_vector.Rd | 2 man/lookaround_nearby_n.Rd | 3 man/plot_sdg_bar.Rd | 4 man/plot_sdg_map.Rd | 6 man/sdg_icon.Rd | 3 tests/testthat/test-add_sdg_pattern.R |only tests/testthat/test-detect_region.R |only tests/testthat/test-helper_SDG_search_terms.R |only tests/testthat/test-plot_sdg_bar.R |only tests/testthat/test-plot_sdg_map.R |only tests/testthat/test-sdg_color.R |only tests/testthat/test-sdg_icon.R |only 27 files changed, 2720 insertions(+), 1347 deletions(-)
Title: Preprocessing and Feature Engineering Steps for Modeling
Description: A recipe prepares your data for modeling. We provide an
extensible framework for pipeable sequences of feature engineering
steps provides preprocessing tools to be applied to data. Statistical
parameters for the steps can be estimated from an initial data set and
then applied to other data sets. The resulting processed output can
then be used as inputs for statistical or machine learning models.
Author: Max Kuhn [aut, cre],
Hadley Wickham [aut],
Emil Hvitfeldt [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
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recipes-1.0.6/recipes/tests/testthat/test-retraining.R |only recipes-1.0.6/recipes/tests/testthat/test-rm.R |only recipes-1.0.6/recipes/tests/testthat/test-roles.R |only recipes-1.0.6/recipes/tests/testthat/test-sample.R |only recipes-1.0.6/recipes/tests/testthat/test-scale.R |only recipes-1.0.6/recipes/tests/testthat/test-select.R | 7 recipes-1.0.6/recipes/tests/testthat/test-shuffle.R |only recipes-1.0.6/recipes/tests/testthat/test-skipping.R |only recipes-1.0.6/recipes/tests/testthat/test-slice.R |only recipes-1.0.6/recipes/tests/testthat/test-sparsity.R |only recipes-1.0.6/recipes/tests/testthat/test-spatialsign.R |only recipes-1.0.6/recipes/tests/testthat/test-spline_b.R |only recipes-1.0.6/recipes/tests/testthat/test-spline_convex.R |only recipes-1.0.6/recipes/tests/testthat/test-spline_monotone.R |only recipes-1.0.6/recipes/tests/testthat/test-spline_natural.R |only recipes-1.0.6/recipes/tests/testthat/test-spline_nonnegative.R |only recipes-1.0.6/recipes/tests/testthat/test-sqrt.R |only recipes-1.0.6/recipes/tests/testthat/test-string2factor.R |only recipes-1.0.6/recipes/tests/testthat/test-stringsAsFactors.R |only recipes-1.0.6/recipes/tests/testthat/test-term_info.R |only recipes-1.0.6/recipes/tests/testthat/test-tidy.R |only recipes-1.0.6/recipes/tests/testthat/test-time.R | 16 recipes-1.0.6/recipes/tests/testthat/test-unknown.R |only recipes-1.0.6/recipes/tests/testthat/test-unorder.R |only recipes-1.0.6/recipes/tests/testthat/test-window.R |only recipes-1.0.6/recipes/tests/testthat/test-zv.R |only 427 files changed, 1611 insertions(+), 676 deletions(-)
Title: Joint Peak Detection in Several ChIP-Seq Samples
Description: Jointly segment several ChIP-seq samples to find the peaks
which are the same and different across samples. The fast approximate
maximum Poisson likelihood algorithm is described in
"PeakSegJoint: fast supervised peak detection via joint segmentation
of multiple count data samples"
<arXiv:1506.01286> by TD Hocking and G Bourque.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between PeakSegJoint versions 2022.4.6 dated 2022-04-07 and 2023.4.24 dated 2023-04-24
DESCRIPTION | 6 MD5 | 6 NEWS | 294 +++++++++++++------------------------------ src/PeakSegJoint_interface.c | 2 4 files changed, 98 insertions(+), 210 deletions(-)
Title: Ornstein-Uhlenbeck Models for Phylogenetic Comparative
Hypotheses
Description: Fit and compare Ornstein-Uhlenbeck models for evolution along a phylogenetic tree.
Author: Aaron A. King [aut, cre] ,
Marguerite A. Butler [ctb]
Maintainer: Aaron A. King <kingaa@umich.edu>
Diff between ouch versions 2.18 dated 2022-05-16 and 2.19 dated 2023-04-24
DESCRIPTION | 22 +++++++++++----------- MD5 | 51 +++++++++++++++++++++++++++------------------------ NAMESPACE | 3 +++ R/as_data_frame.R |only R/update.R | 1 - data/anolis.ssd.rda |binary data/bimac.rda |binary data/geospiza.rda |binary inst/CITATION | 12 ++++++------ inst/NEWS | 4 ++++ inst/NEWS.Rd | 5 +++++ inst/doc |only man/anolis_ssd.Rd | 3 ++- man/as_data_frame.Rd |only man/bimac.Rd | 3 ++- man/bootstrap.Rd | 9 +++++---- man/brown.Rd | 3 ++- man/coef.Rd | 17 +++++++++-------- man/geospiza.Rd | 2 ++ man/hansen.Rd | 5 ++++- man/logLik.Rd | 9 +++++---- man/package.Rd | 1 + man/paint.Rd | 1 + man/plot.Rd | 1 + man/print.Rd | 15 ++++++++------- man/simulate.Rd | 9 +++++---- man/summary.Rd | 13 +++++++------ man/update.Rd | 21 +++++++-------------- 28 files changed, 117 insertions(+), 93 deletions(-)
Title: Projected Subset Gradient Descent
Description: Functions to generate ensembles of generalized linear models using
a greedy projected subset gradient descent algorithm. The sparsity
and diversity tuning parameters are selected by cross-validation.
Author: Anthony Christidis [aut, cre],
Stefan Van Aelst [aut],
Ruben Zamar [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between PSGD versions 1.0.2 dated 2022-11-22 and 1.0.3 dated 2023-04-24
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 6 +++++- src/Makevars.in | 2 +- src/Makevars.win | 2 +- src/PSGD.cpp | 20 +++++++++++++------- src/PSGD.hpp | 4 ++-- src/PS_Model.cpp | 2 +- 8 files changed, 34 insertions(+), 24 deletions(-)
Title: Dynamic Function-Oriented 'Make'-Like Declarative Pipelines
Description: Pipeline tools coordinate the pieces of computationally
demanding analysis projects.
The 'targets' package is a 'Make'-like pipeline tool for statistics and
data science in R. The package skips costly runtime for tasks
that are already up to date,
orchestrates the necessary computation with implicit parallel computing,
and abstracts files as R objects. If all the current output matches
the current upstream code and data, then the whole pipeline is up
to date, and the results are more trustworthy than otherwise.
The methodology in this package
borrows from GNU 'Make' (2015, ISBN:978-9881443519)
and 'drake' (2018, <doi:10.21105/joss.00550>).
Author: William Michael Landau [aut, cre]
,
Matthew T. Warkentin [ctb],
Mark Edmondson [ctb] ,
Samantha Oliver [rev] ,
Tristan Mahr [rev] ,
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@gmail.com>
Diff between targets versions 0.14.3 dated 2023-03-08 and 1.0.0 dated 2023-04-24
targets-0.14.3/targets/tests/testthat/test-class_url.R |only targets-1.0.0/targets/DESCRIPTION | 41 targets-1.0.0/targets/MD5 | 419 +++++----- targets-1.0.0/targets/NAMESPACE | 5 targets-1.0.0/targets/NEWS.md | 22 targets-1.0.0/targets/R/class_active.R | 3 targets-1.0.0/targets/R/class_clustermq.R | 2 targets-1.0.0/targets/R/class_crew.R |only targets-1.0.0/targets/R/class_frames.R | 2 targets-1.0.0/targets/R/class_fst_dt.R | 5 targets-1.0.0/targets/R/class_future.R | 5 targets-1.0.0/targets/R/class_options.R | 32 targets-1.0.0/targets/R/class_resources_crew.R |only targets-1.0.0/targets/R/class_resources_url.R | 22 targets-1.0.0/targets/R/class_store.R | 8 targets-1.0.0/targets/R/class_store_custom.R | 92 ++ targets-1.0.0/targets/R/class_url.R | 29 targets-1.0.0/targets/R/tar_active.R | 4 targets-1.0.0/targets/R/tar_branch_index.R | 4 targets-1.0.0/targets/R/tar_branch_names.R | 4 targets-1.0.0/targets/R/tar_branch_names_raw.R | 4 targets-1.0.0/targets/R/tar_branches.R | 4 targets-1.0.0/targets/R/tar_built.R | 4 targets-1.0.0/targets/R/tar_call.R | 4 targets-1.0.0/targets/R/tar_cancel.R | 4 targets-1.0.0/targets/R/tar_canceled.R | 4 targets-1.0.0/targets/R/tar_config_get.R | 4 targets-1.0.0/targets/R/tar_config_set.R | 4 targets-1.0.0/targets/R/tar_config_unset.R | 4 targets-1.0.0/targets/R/tar_debug_instructions.R | 9 targets-1.0.0/targets/R/tar_definition.R | 4 targets-1.0.0/targets/R/tar_delete.R | 4 targets-1.0.0/targets/R/tar_destroy.R | 4 targets-1.0.0/targets/R/tar_engine_knitr.R | 2 targets-1.0.0/targets/R/tar_envir.R | 4 targets-1.0.0/targets/R/tar_errored.R | 4 targets-1.0.0/targets/R/tar_format.R | 82 + targets-1.0.0/targets/R/tar_glimpse.R | 2 targets-1.0.0/targets/R/tar_group.R | 4 targets-1.0.0/targets/R/tar_invalidate.R | 4 targets-1.0.0/targets/R/tar_load.R | 4 targets-1.0.0/targets/R/tar_load_everything.R | 4 targets-1.0.0/targets/R/tar_load_globals.R | 4 targets-1.0.0/targets/R/tar_load_raw.R | 4 targets-1.0.0/targets/R/tar_make.R | 67 + targets-1.0.0/targets/R/tar_make_clustermq.R | 4 targets-1.0.0/targets/R/tar_make_future.R | 4 targets-1.0.0/targets/R/tar_manifest.R | 4 targets-1.0.0/targets/R/tar_mermaid.R | 2 targets-1.0.0/targets/R/tar_meta.R | 4 targets-1.0.0/targets/R/tar_name.R | 4 targets-1.0.0/targets/R/tar_network.R | 4 targets-1.0.0/targets/R/tar_newer.R | 4 targets-1.0.0/targets/R/tar_objects.R | 4 targets-1.0.0/targets/R/tar_older.R | 4 targets-1.0.0/targets/R/tar_option_get.R | 7 targets-1.0.0/targets/R/tar_option_reset.R | 4 targets-1.0.0/targets/R/tar_option_set.R | 11 targets-1.0.0/targets/R/tar_outdated.R | 4 targets-1.0.0/targets/R/tar_path.R | 4 targets-1.0.0/targets/R/tar_path_script.R | 4 targets-1.0.0/targets/R/tar_path_script_support.R | 4 targets-1.0.0/targets/R/tar_path_store.R | 4 targets-1.0.0/targets/R/tar_path_target.R | 4 targets-1.0.0/targets/R/tar_pid.R | 4 targets-1.0.0/targets/R/tar_poll.R | 2 targets-1.0.0/targets/R/tar_process.R | 4 targets-1.0.0/targets/R/tar_progress.R | 4 targets-1.0.0/targets/R/tar_progress_branches.R | 4 targets-1.0.0/targets/R/tar_progress_summary.R | 4 targets-1.0.0/targets/R/tar_prune.R | 4 targets-1.0.0/targets/R/tar_read.R | 4 targets-1.0.0/targets/R/tar_read_raw.R | 4 targets-1.0.0/targets/R/tar_renv.R | 2 targets-1.0.0/targets/R/tar_resources.R | 8 targets-1.0.0/targets/R/tar_resources_aws.R | 2 targets-1.0.0/targets/R/tar_resources_crew.R |only targets-1.0.0/targets/R/tar_resources_url.R | 16 targets-1.0.0/targets/R/tar_script.R | 2 targets-1.0.0/targets/R/tar_seed.R | 4 targets-1.0.0/targets/R/tar_sitrep.R | 4 targets-1.0.0/targets/R/tar_skipped.R | 4 targets-1.0.0/targets/R/tar_source.R | 27 targets-1.0.0/targets/R/tar_started.R | 4 targets-1.0.0/targets/R/tar_store.R | 4 targets-1.0.0/targets/R/tar_target.R | 6 targets-1.0.0/targets/R/tar_target_raw.R | 10 targets-1.0.0/targets/R/tar_timestamp.R | 4 targets-1.0.0/targets/R/tar_timestamp_raw.R | 4 targets-1.0.0/targets/R/tar_traceback.R | 4 targets-1.0.0/targets/R/tar_unscript.R | 2 targets-1.0.0/targets/R/tar_validate.R | 4 targets-1.0.0/targets/R/tar_visnetwork.R | 2 targets-1.0.0/targets/R/tar_watch.R | 2 targets-1.0.0/targets/R/tar_workspace.R | 4 targets-1.0.0/targets/R/tar_workspaces.R | 4 targets-1.0.0/targets/R/use_targets.R | 2 targets-1.0.0/targets/R/use_targets_rmd.R | 2 targets-1.0.0/targets/R/utils_assert.R | 10 targets-1.0.0/targets/R/utils_condition.R | 7 targets-1.0.0/targets/R/utils_logic.R | 52 + targets-1.0.0/targets/R/utils_url.R | 48 - targets-1.0.0/targets/build/partial.rdb |binary targets-1.0.0/targets/build/vignette.rds |binary targets-1.0.0/targets/inst/pipelines/example.R | 6 targets-1.0.0/targets/man/tar_active.Rd | 4 targets-1.0.0/targets/man/tar_branch_index.Rd | 4 targets-1.0.0/targets/man/tar_branch_names.Rd | 4 targets-1.0.0/targets/man/tar_branch_names_raw.Rd | 4 targets-1.0.0/targets/man/tar_branches.Rd | 4 targets-1.0.0/targets/man/tar_built.Rd | 4 targets-1.0.0/targets/man/tar_call.Rd | 4 targets-1.0.0/targets/man/tar_cancel.Rd | 4 targets-1.0.0/targets/man/tar_canceled.Rd | 4 targets-1.0.0/targets/man/tar_config_get.Rd | 4 targets-1.0.0/targets/man/tar_config_set.Rd | 4 targets-1.0.0/targets/man/tar_config_unset.Rd | 4 targets-1.0.0/targets/man/tar_definition.Rd | 4 targets-1.0.0/targets/man/tar_delete.Rd | 4 targets-1.0.0/targets/man/tar_destroy.Rd | 4 targets-1.0.0/targets/man/tar_engine_knitr.Rd | 2 targets-1.0.0/targets/man/tar_envir.Rd | 4 targets-1.0.0/targets/man/tar_errored.Rd | 4 targets-1.0.0/targets/man/tar_format.Rd | 52 - targets-1.0.0/targets/man/tar_glimpse.Rd | 2 targets-1.0.0/targets/man/tar_group.Rd | 4 targets-1.0.0/targets/man/tar_invalidate.Rd | 4 targets-1.0.0/targets/man/tar_load.Rd | 4 targets-1.0.0/targets/man/tar_load_everything.Rd | 4 targets-1.0.0/targets/man/tar_load_globals.Rd | 4 targets-1.0.0/targets/man/tar_load_raw.Rd | 4 targets-1.0.0/targets/man/tar_make.Rd | 23 targets-1.0.0/targets/man/tar_make_clustermq.Rd | 4 targets-1.0.0/targets/man/tar_make_future.Rd | 4 targets-1.0.0/targets/man/tar_manifest.Rd | 4 targets-1.0.0/targets/man/tar_mermaid.Rd | 2 targets-1.0.0/targets/man/tar_meta.Rd | 4 targets-1.0.0/targets/man/tar_name.Rd | 4 targets-1.0.0/targets/man/tar_network.Rd | 4 targets-1.0.0/targets/man/tar_newer.Rd | 4 targets-1.0.0/targets/man/tar_objects.Rd | 4 targets-1.0.0/targets/man/tar_older.Rd | 4 targets-1.0.0/targets/man/tar_option_get.Rd | 4 targets-1.0.0/targets/man/tar_option_reset.Rd | 4 targets-1.0.0/targets/man/tar_option_set.Rd | 13 targets-1.0.0/targets/man/tar_outdated.Rd | 4 targets-1.0.0/targets/man/tar_path.Rd | 4 targets-1.0.0/targets/man/tar_path_script.Rd | 4 targets-1.0.0/targets/man/tar_path_script_support.Rd | 4 targets-1.0.0/targets/man/tar_path_store.Rd | 4 targets-1.0.0/targets/man/tar_path_target.Rd | 4 targets-1.0.0/targets/man/tar_pid.Rd | 4 targets-1.0.0/targets/man/tar_poll.Rd | 2 targets-1.0.0/targets/man/tar_process.Rd | 4 targets-1.0.0/targets/man/tar_progress.Rd | 4 targets-1.0.0/targets/man/tar_progress_branches.Rd | 4 targets-1.0.0/targets/man/tar_progress_summary.Rd | 4 targets-1.0.0/targets/man/tar_prune.Rd | 4 targets-1.0.0/targets/man/tar_read.Rd | 4 targets-1.0.0/targets/man/tar_read_raw.Rd | 4 targets-1.0.0/targets/man/tar_renv.Rd | 2 targets-1.0.0/targets/man/tar_resources.Rd | 10 targets-1.0.0/targets/man/tar_resources_aws.Rd | 3 targets-1.0.0/targets/man/tar_resources_clustermq.Rd | 1 targets-1.0.0/targets/man/tar_resources_crew.Rd |only targets-1.0.0/targets/man/tar_resources_feather.Rd | 1 targets-1.0.0/targets/man/tar_resources_fst.Rd | 1 targets-1.0.0/targets/man/tar_resources_future.Rd | 1 targets-1.0.0/targets/man/tar_resources_gcp.Rd | 1 targets-1.0.0/targets/man/tar_resources_parquet.Rd | 1 targets-1.0.0/targets/man/tar_resources_qs.Rd | 1 targets-1.0.0/targets/man/tar_resources_url.Rd | 17 targets-1.0.0/targets/man/tar_script.Rd | 2 targets-1.0.0/targets/man/tar_seed.Rd | 4 targets-1.0.0/targets/man/tar_sitrep.Rd | 4 targets-1.0.0/targets/man/tar_skipped.Rd | 4 targets-1.0.0/targets/man/tar_source.Rd | 18 targets-1.0.0/targets/man/tar_started.Rd | 4 targets-1.0.0/targets/man/tar_store.Rd | 4 targets-1.0.0/targets/man/tar_target.Rd | 6 targets-1.0.0/targets/man/tar_target_raw.Rd | 12 targets-1.0.0/targets/man/tar_timestamp.Rd | 4 targets-1.0.0/targets/man/tar_timestamp_raw.Rd | 4 targets-1.0.0/targets/man/tar_traceback.Rd | 4 targets-1.0.0/targets/man/tar_unscript.Rd | 2 targets-1.0.0/targets/man/tar_validate.Rd | 4 targets-1.0.0/targets/man/tar_visnetwork.Rd | 2 targets-1.0.0/targets/man/tar_watch.Rd | 2 targets-1.0.0/targets/man/tar_workspace.Rd | 4 targets-1.0.0/targets/man/tar_workspaces.Rd | 4 targets-1.0.0/targets/man/use_targets.Rd | 2 targets-1.0.0/targets/man/use_targets_rmd.Rd | 2 targets-1.0.0/targets/tests/hpc/test-crew_local.R |only targets-1.0.0/targets/tests/hpc/test-exports.R | 44 - targets-1.0.0/targets/tests/interactive/test-class_url.R | 329 +++++++ targets-1.0.0/targets/tests/interactive/test-file.R | 24 targets-1.0.0/targets/tests/interactive/test-mermaid.R | 3 targets-1.0.0/targets/tests/testthat.R | 2 targets-1.0.0/targets/tests/testthat/helper-utils.R | 16 targets-1.0.0/targets/tests/testthat/test-class_clustermq.R | 28 targets-1.0.0/targets/tests/testthat/test-class_crew.R |only targets-1.0.0/targets/tests/testthat/test-class_fst_dt.R | 27 targets-1.0.0/targets/tests/testthat/test-class_options.R | 18 targets-1.0.0/targets/tests/testthat/test-class_resources_crew.R |only targets-1.0.0/targets/tests/testthat/test-class_store_custom.R | 81 + targets-1.0.0/targets/tests/testthat/test-tar_debug_instructions.R | 9 targets-1.0.0/targets/tests/testthat/test-tar_format.R | 12 targets-1.0.0/targets/tests/testthat/test-tar_make.R | 37 targets-1.0.0/targets/tests/testthat/test-tar_make_clustermq.R | 18 targets-1.0.0/targets/tests/testthat/test-tar_option_set.R | 15 targets-1.0.0/targets/tests/testthat/test-tar_resources_crew.R |only targets-1.0.0/targets/tests/testthat/test-tar_resources_url.R | 8 targets-1.0.0/targets/tests/testthat/test-tar_source.R | 16 targets-1.0.0/targets/tests/testthat/test-utils_assert.R | 19 targets-1.0.0/targets/tests/testthat/test-utils_logic.R | 65 + 215 files changed, 1811 insertions(+), 688 deletions(-)
Title: Size-Constrained Clustering
Description: Provides wrappers for 'scclust', a C library for computationally efficient
size-constrained clustering with near-optimal performance.
See <https://github.com/fsavje/scclust> for more information.
Author: Fredrik Savje [aut, cre],
Michael Higgins [aut],
Jasjeet Sekhon [aut]
Maintainer: Fredrik Savje <fredrik.savje@yale.edu>
Diff between scclust versions 0.2.2 dated 2018-12-13 and 0.2.3 dated 2023-04-24
DESCRIPTION | 10 +++---- MD5 | 22 ++++++++--------- NEWS.md | 8 ++++++ R/sc_clustering.R | 1 R/scclust-package.R | 1 README.md | 7 +---- man/check_clustering.Rd | 10 +++++-- man/hierarchical_clustering.Rd | 8 ++++-- man/sc_clustering.Rd | 16 ++++++++---- man/scclust-package.Rd | 1 src/error.h | 2 - src/libscclust/src/hierarchical_clustering.c | 34 +++++++++++++++++++-------- 12 files changed, 75 insertions(+), 45 deletions(-)
Title: Computational Geometry
Description: R interface to (some of) cddlib
(<https://github.com/cddlib/cddlib>).
Converts back and forth between two representations of a convex polytope:
as solution of a set of linear equalities and inequalities and as
convex hull of set of points and rays.
Also does linear programming and redundant generator elimination
(for example, convex hull in n dimensions). All functions can use exact
infinite-precision rational arithmetic.
Author: Charles J. Geyer <charlie@stat.umn.edu> and
Glen D. Meeden <glen@stat.umn.edu>, incorporates code from
cddlib written by Komei Fukuda <fukuda@ifor.math.ethz.ch>
Maintainer: Charles J. Geyer <charlie@stat.umn.edu>
Diff between rcdd versions 1.5 dated 2021-11-18 and 1.5-2 dated 2023-04-24
CHANGES | 1 + DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/doc/vinny.pdf |binary src/cdd.h | 3 +++ src/cdd_f.h | 3 +++ src/cddmp.c | 4 ++-- src/cddmp_f.c | 4 ++-- src/nonred.c | 3 ++- 10 files changed, 26 insertions(+), 18 deletions(-)
Title: Modeling and Map Production using Random Forest and Related
Stochastic Models
Description: Creates sophisticated models of training data and validates the models with an independent test set, cross validation, or Out Of Bag (OOB) predictions on the training data. Create graphs and tables of the model validation results. Applies these models to GIS .img files of predictors to create detailed prediction surfaces. Handles large predictor files for map making, by reading in the .img files in chunks, and output to the .txt file the prediction for each data chunk, before reading the next chunk of data.
Author: Elizabeth Freeman, Tracey Frescino
Maintainer: Elizabeth Freeman <elizabeth.a.freeman@usda.gov>
Diff between ModelMap versions 3.4.0.3 dated 2023-01-06 and 3.4.0.4 dated 2023-04-24
DESCRIPTION | 12 +++++++----- MD5 | 20 ++++++++++---------- NAMESPACE | 3 +-- inst/CHANGELOG | 9 ++++++++- inst/CITATION | 4 ++-- inst/README | 2 +- inst/doc/ExploreModelMap.pdf |binary inst/doc/VModelMap.pdf |binary inst/doc/Vquantile.pdf |binary man/ModelMap-package.Rd | 4 ++-- man/build.rastLUT.Rd | 2 +- 11 files changed, 32 insertions(+), 24 deletions(-)
Title: Linked Micromap Plots
Description: This group of functions simplifies the creation of linked micromap plots. Please
see <https://www.jstatsoft.org/v63/i02/> for additional details.
Author: Quinn Payton [aut],
Tony Olsen [aut],
Marc Weber [ctb],
Michael McManus [ctb],
Tom Kincaid [ctb],
Marcus W. Beck [cre, ctb]
Maintainer: Marcus W. Beck <mbeck@tbep.org>
Diff between micromap versions 1.9.5 dated 2021-09-29 and 1.9.6 dated 2023-04-24
micromap-1.9.5/micromap/inst/doc/Introduction_Guide.R |only micromap-1.9.5/micromap/inst/doc/Introduction_Guide.Rnw |only micromap-1.9.5/micromap/man/lmplot-internal.Rd |only micromap-1.9.5/micromap/vignettes |only micromap-1.9.6/micromap/DESCRIPTION | 20 micromap-1.9.6/micromap/MD5 | 72 - micromap-1.9.6/micromap/NAMESPACE | 58 - micromap-1.9.6/micromap/R/AttDefaults.r | 46 micromap-1.9.6/micromap/R/CreateMapTable.r | 25 micromap-1.9.6/micromap/R/DataReorg.r | 17 micromap-1.9.6/micromap/R/GraphCleaning.r | 21 micromap-1.9.6/micromap/R/MapGraphs.r | 4 micromap-1.9.6/micromap/R/PanelBuilding.r | 17 micromap-1.9.6/micromap/R/UtilityFunctions.r | 20 micromap-1.9.6/micromap/R/lmGroupedPlot.r | 4 micromap-1.9.6/micromap/R/lmPlot.r | 26 micromap-1.9.6/micromap/R/micromap-package.R |only micromap-1.9.6/micromap/R/mmPlot.r | 21 micromap-1.9.6/micromap/inst/CITATION | 26 micromap-1.9.6/micromap/inst/NEWS.Rd | 15 micromap-1.9.6/micromap/inst/doc/Introduction_Guide.pdf |binary micromap-1.9.6/micromap/man/OrEcoLevel3.Rd | 46 micromap-1.9.6/micromap/man/USstates.Rd | 47 - micromap-1.9.6/micromap/man/WSA3.Rd | 46 micromap-1.9.6/micromap/man/alterForMedian.Rd | 53 - micromap-1.9.6/micromap/man/assimilatePlot.Rd | 64 - micromap-1.9.6/micromap/man/create_map_table.Rd | 70 - micromap-1.9.6/micromap/man/edPov.Rd | 53 - micromap-1.9.6/micromap/man/internal.Rd |only micromap-1.9.6/micromap/man/labels_att.Rd | 60 - micromap-1.9.6/micromap/man/labels_build.Rd | 73 - micromap-1.9.6/micromap/man/lungMort.Rd | 70 - micromap-1.9.6/micromap/man/mmplot.Rd | 748 ++++++++-------- micromap-1.9.6/micromap/man/print.mm.Rd | 60 - micromap-1.9.6/micromap/man/printLMPlot.Rd | 55 - micromap-1.9.6/micromap/man/right.Rd | 47 - micromap-1.9.6/micromap/man/sample_att.Rd | 89 + micromap-1.9.6/micromap/man/statesFlatfile.Rd | 52 - micromap-1.9.6/micromap/man/vegCov.Rd | 71 - 39 files changed, 1155 insertions(+), 941 deletions(-)
Title: Hierarchical Bayesian Aldrich-McKelvey Scaling via 'Stan'
Description: Perform hierarchical Bayesian Aldrich-McKelvey scaling using Hamiltonian Monte
Carlo via 'Stan'. Aldrich-McKelvey ('AM') scaling is a method for estimating the ideological
positions of survey respondents and political actors on a common scale using positional survey
data. The hierarchical versions of the Bayesian 'AM' model included in this package outperform
other versions by a considerable margin both in terms of yielding meaningful posterior
distributions for respondent positions and in terms of recovering true respondent positions
in simulations. The package contains functions for preparing data, fitting models, extracting
estimates, plotting key results, and comparing models using cross-validation. The models in
this package are described in: Bølstad (forthcoming) ''Hierarchical Bayesian Aldrich-McKelvey
Scaling'', Political Analysis.
Author: Joergen Boelstad [aut, cre]
Maintainer: Joergen Boelstad <jorgen.bolstad@stv.uio.no>
Diff between hbamr versions 1.0.5 dated 2023-03-14 and 1.1.1 dated 2023-04-24
hbamr-1.0.5/hbamr/README.md |only hbamr-1.1.1/hbamr/DESCRIPTION | 6 hbamr-1.1.1/hbamr/MD5 | 62 hbamr-1.1.1/hbamr/NAMESPACE | 1 hbamr-1.1.1/hbamr/R/fbam.R |only hbamr-1.1.1/hbamr/R/get_est.R | 24 hbamr-1.1.1/hbamr/R/get_plot_data.R | 45 hbamr-1.1.1/hbamr/R/hbam.R | 2 hbamr-1.1.1/hbamr/R/inits.R | 1 hbamr-1.1.1/hbamr/R/plot_over_self.R | 56 hbamr-1.1.1/hbamr/R/stanmodels.R | 3 hbamr-1.1.1/hbamr/build/vignette.rds |binary hbamr-1.1.1/hbamr/inst/doc/hbamr.R | 3 hbamr-1.1.1/hbamr/inst/doc/hbamr.Rmd | 42 hbamr-1.1.1/hbamr/inst/doc/hbamr.html | 117 hbamr-1.1.1/hbamr/inst/stan/FBAM_MINI.stan |only hbamr-1.1.1/hbamr/man/fbam.Rd |only hbamr-1.1.1/hbamr/man/get_est.Rd | 12 hbamr-1.1.1/hbamr/man/get_plot_data.Rd | 6 hbamr-1.1.1/hbamr/man/hbam.Rd | 2 hbamr-1.1.1/hbamr/man/plot_over_self.Rd | 6 hbamr-1.1.1/hbamr/src/Makevars.win | 4 hbamr-1.1.1/hbamr/src/RcppExports.cpp | 2 hbamr-1.1.1/hbamr/src/stanExports_BAM.h | 2061 ++++++----- hbamr-1.1.1/hbamr/src/stanExports_FBAM_MINI.cc |only hbamr-1.1.1/hbamr/src/stanExports_FBAM_MINI.h |only hbamr-1.1.1/hbamr/src/stanExports_HBAM.h | 3653 ++++++++++--------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_0.h | 2658 +++++++------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_2.h | 3894 +++++++++++--------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_HM.h | 3192 +++++++++-------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_MINI.h | 2962 ++++++++------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_NE.h | 3367 ++++++++++------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_R.h | 4492 +++++++++++++----------- hbamr-1.1.1/hbamr/src/stanExports_HBAM_R_MINI.h | 3778 +++++++++++--------- hbamr-1.1.1/hbamr/vignettes/hbamr.Rmd | 42 35 files changed, 16916 insertions(+), 13577 deletions(-)
Title: Tools to Support Relative Importance Analysis
Description: Methods to apply decomposition-based relative importance
analysis for R functions. This package supports the application of
decomposition methods by providing 'lapply'- or 'Map'-like meta-functions that
compute dominance analysis (Azen, R., & Budescu, D. V. (2003)
<doi:10.1037/1082-989X.8.2.129>; Grömping, U. (2007)
<doi:10.1198/000313007X188252>) or Shapley value regression
(Lipovetsky, S., & Conklin, M. (2001) <doi:10.1002/asmb.446>)
based on the values returned from other functions.
Author: Joseph Luchman [aut, cre]
Maintainer: Joseph Luchman <jluchman@gmail.com>
Diff between domir versions 1.0.0 dated 2022-07-11 and 1.0.1 dated 2023-04-24
DESCRIPTION | 10 - MD5 | 26 +-- NEWS.md | 8 + R/domin.r | 16 +- R/domir.r | 298 +++++++++++++++++++++------------------------ README.md | 85 ++++-------- build/vignette.rds |binary inst/doc/domir_basics.Rmd | 40 +++--- inst/doc/domir_basics.html | 128 ++++++++++--------- man/domin.Rd | 10 + man/domir.Rd | 42 ++++-- man/print.domir.Rd | 11 - man/summary.domir.Rd | 6 vignettes/domir_basics.Rmd | 40 +++--- 14 files changed, 373 insertions(+), 347 deletions(-)
Title: Tipping Point Analysis for Bayesian Dynamic Borrowing
Description: Tipping point analysis for clinical trials that employ Bayesian dynamic borrowing via robust meta-analytic predictive (MAP) priors. Mainly an implementation of an approach proposed by Best and colleagues (2021) is provided <doi:10.1002/pst.2093>. Further functions facilitate the specification of the robust MAP prior via expert elicitation (using the roulette method) and computation of the posterior distribution of the treatment effect with either fixed or stochastic expert-elicited weights. Intended use is the planning, analysis and interpretation of extrapolation studies in pediatric drug development, but applicability is generally wider.
Author: Morten Dreher [aut],
Christian Stock [aut, cre] ,
Emma Torrini [ctb]
Maintainer: Christian Stock <christian.stock@boehringer-ingelheim.com>
Diff between tipmap versions 0.3.9 dated 2022-12-07 and 0.4.1 dated 2023-04-24
tipmap-0.3.9/tipmap/R/tipmap-package.R |only tipmap-0.3.9/tipmap/build/partial.rdb |only tipmap-0.3.9/tipmap/man/tipmap-package.Rd |only tipmap-0.4.1/tipmap/DESCRIPTION | 15 tipmap-0.4.1/tipmap/MD5 | 29 tipmap-0.4.1/tipmap/NEWS.md | 54 tipmap-0.4.1/tipmap/R/fit_beta_1exp.R | 2 tipmap-0.4.1/tipmap/README.md | 220 - tipmap-0.4.1/tipmap/build/vignette.rds |binary tipmap-0.4.1/tipmap/inst/doc/expert_elicitation.R |only tipmap-0.4.1/tipmap/inst/doc/expert_elicitation.Rmd |only tipmap-0.4.1/tipmap/inst/doc/expert_elicitation.html |only tipmap-0.4.1/tipmap/inst/doc/introduction.R | 378 - tipmap-0.4.1/tipmap/inst/doc/introduction.Rmd | 689 +-- tipmap-0.4.1/tipmap/inst/doc/introduction.html | 4037 +++++++++---------- tipmap-0.4.1/tipmap/man/fit_beta_1exp.Rd | 2 tipmap-0.4.1/tipmap/vignettes/expert_elicitation.Rmd |only tipmap-0.4.1/tipmap/vignettes/introduction.Rmd | 689 +-- tipmap-0.4.1/tipmap/vignettes/references.bib | 274 - 19 files changed, 3307 insertions(+), 3082 deletions(-)
Title: k-Nearest Neighbor Join for Spatial Data
Description: K-nearest neighbor search for projected and non-projected 'sf' spatial layers. Nearest neighbor search uses (1) C code from 'GeographicLib' for lon-lat point layers, (2) function knn() from package 'nabor' for projected point layers, or (3) function st_distance() from package 'sf' for line or polygon layers. The package also includes several other utility functions for spatial analysis.
Author: Michael Dorman [aut, cre],
Johnathan Rush [ctb],
Ian Hough [ctb],
Dominic Russel [ctb],
Luigi Ranghetti [ctb],
Attilio Benini [ctb],
Arnaud Tarroux [ctb],
Charles F.F Karney [ctb, cph]
Maintainer: Michael Dorman <dorman@post.bgu.ac.il>
Diff between nngeo versions 0.4.6 dated 2022-05-29 and 0.4.7 dated 2023-04-24
DESCRIPTION | 8 ++++---- LICENSE | 2 +- MD5 | 12 ++++++------ NEWS.md | 8 ++++++-- build/vignette.rds |binary inst/doc/intro.pdf |binary src/geodesic.c | 2 +- 7 files changed, 18 insertions(+), 14 deletions(-)
Title: Optimal Design and Statistical Power for Experimental Studies
Investigating Main, Mediation, and Moderation Effects
Description: Calculate the optimal sample size allocation that
produces the highest statistical power for experimental
studies under a budget constraint, and
perform power analyses with and without accommodating
cost structures of sampling. The designs cover single-level
and multilevel experiments detecting main, mediation,
and moderation effects (and some combinations).
The references for the proposed methods include:
(1) Shen, Z., & Kelcey, B. (2020).
Optimal sample allocation under unequal costs in
cluster-randomized trials.
Journal of Educational and Behavioral Statistics, 45(4): 446-474.
<doi:10.3102/1076998620912418>.
(2) Shen, Z., & Kelcey, B. (2022b). Optimal sample allocation for
three-level multisite cluster-randomized trials.
Journal of Research on Educational Effectiveness, 15 (1), 130-150.
<doi:10.1080/19345747.2021.1953200>.
(3) Shen, Z., & Kelcey, B. (2022a). Optimal sample allocation in
multisite randomized trials. The Journal of Experimental Education.
<d [...truncated...]
Author: Zuchao Shen [aut, cre] ,
Benjamin Kelcey [aut]
Maintainer: Zuchao Shen <zuchao.shen@gmail.com>
Diff between odr versions 1.4.1 dated 2023-04-02 and 1.4.2 dated 2023-04-24
DESCRIPTION | 23 ++++++++++---------- MD5 | 22 +++++++++---------- R/od.1.111.R | 8 +++---- R/odr.R | 28 ++++++++++++------------- R/power.1.111.R | 59 ++++++++++++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/odr.Rmd | 21 +++++++++++------- inst/doc/odr.html | 21 +++++++++--------- man/od.1.111.Rd | 10 ++++---- man/odr-package.Rd | 28 ++++++++++++------------- man/power.1.111.Rd | 28 ++++++++++++++++++------- vignettes/odr.Rmd | 21 +++++++++++------- 12 files changed, 156 insertions(+), 113 deletions(-)
Title: Tools for Inference in the Presence of a Monotone Likelihood
Description: Proportional hazards estimation in the presence of a partially monotone likelihood has difficulties, in that finite estimators do not exist. These difficulties are related to those arising from logistic and multinomial regression. References for methods are given in the separate function documents. Supported by grant NSF DMS 1712839.
Author: John E. Kolassa and Juan Zhang
Maintainer: John E. Kolassa <kolassa@stat.rutgers.edu>
Diff between PHInfiniteEstimates versions 2.7 dated 2023-02-08 and 2.9 dated 2023-04-24
DESCRIPTION | 8 ++++---- MD5 | 18 ++++++++++++------ NAMESPACE | 9 +++++++++ R/andersen.R |only R/arjas.R |only R/checkcensor.R | 8 ++++++-- R/gehan.wilcoxon.R | 5 +++-- R/survregpredict.R |only build/partial.rdb |binary man/andersenplot.Rd |only man/arjasplot.Rd |only man/gehan.wilcoxon.test.Rd | 11 ++++++++++- man/survregpredict.Rd |only 13 files changed, 44 insertions(+), 15 deletions(-)
More information about PHInfiniteEstimates at CRAN
Permanent link
Title: Create a Package or Research Compendium Structure
Description: Makes easier the creation of R package or research compendium
(i.e. a predefined files/folders structure) so that users can focus on the
code/analysis instead of wasting time organizing files. A full
ready-to-work structure is set up with some additional features: version
control, remote repository creation, CI/CD configuration (check package
integrity under several OS, test code with 'testthat', and build and deploy
website using 'pkgdown'). This package heavily relies on the R packages
'devtools' and 'usethis' and follows recommendations made by Wickham H.
(2015) <ISBN:9781491910597> and Marwick B. et al. (2018)
<doi:10.7287/peerj.preprints.3192v2>.
Author: Nicolas Casajus [aut, cre, cph]
Maintainer: Nicolas Casajus <nicolas.casajus@fondationbiodiversite.fr>
Diff between rcompendium versions 1.0 dated 2022-04-06 and 1.1 dated 2023-04-24
DESCRIPTION | 8 - MD5 | 38 ++--- NEWS.md | 7 + R/add_readme_rmd.R | 1 R/add_renv.R | 13 ++ R/new_package.R | 2 README.md | 68 ++++------ build/vignette.rds |binary inst/CITATION | 4 inst/doc/developing_a_package.html | 14 +- inst/doc/rcompendium.html | 208 ++++++++++++++++---------------- inst/doc/working_with_a_compendium.html | 14 +- inst/templates/R-CMD-check.yaml | 8 - inst/templates/README-comp.Rmd | 14 +- inst/templates/README-pkg.Rmd | 2 inst/templates/pkgdown.yaml | 37 +++-- inst/templates/render-README.yaml | 4 inst/templates/test-coverage.yaml | 28 +++- man/new_package.Rd | 20 ++- man/rcompendium-package.Rd | 18 +- 20 files changed, 284 insertions(+), 224 deletions(-)
Title: Individual and Group Farm Sustainability Assessments using the
IDEA4 Method
Description: Collection of tools to automate the processing of data collected though the IDEA4 method (see Zahm et al. (2018) <doi:10.1051/cagri/2019004> ). Starting from the original data collecting files this packages provides functions to compute IDEA indicators, draw modern and aesthetic plots, and produce a wide range of reporting materials.
Author: David Carayon [aut, cre, cph]
Maintainer: David Carayon <david.carayon@inrae.fr>
Diff between IDEATools versions 3.4.1 dated 2023-03-27 and 3.4.2 dated 2023-04-24
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 5 ++++- inst/report/group/pdf_group_report.Rmd | 2 +- 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf'
or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web
server (<https://overpass-api.de/>) and processed with very fast 'C++'
routines for return to 'R'.
Author: Mark Padgham [aut, cre],
Bob Rudis [aut],
Robin Lovelace [aut],
Maelle Salmon [aut],
Joan Maspons [aut] ,
Andrew Smith [ctb],
James Smith [ctb],
Andrea Gilardi [ctb],
Enrico Spinielli [ctb],
Anthony North [ctb],
Martin Machyna [ctb],
Marcin Kalicinsk [...truncated...]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between osmdata versions 0.2.1 dated 2023-02-24 and 0.2.2 dated 2023-04-24
DESCRIPTION | 6 MD5 | 77 +++--- NAMESPACE | 1 NEWS.md | 15 + R/RcppExports.R | 32 +- R/features.R | 133 +++++++---- R/get-osmdata-df.R | 152 +++++++++--- R/get-osmdata-xml.R | 4 R/get-osmdata.R | 80 +++++- R/opq.R | 101 +++++++- R/overpass-query.R | 9 build/vignette.rds |binary inst/CITATION | 7 inst/doc/osm-sf-translation.html | 4 inst/doc/osmdata-sc.html | 10 inst/doc/osmdata.html | 6 inst/doc/query-split.html | 4 man/add_osm_feature.Rd | 1 man/add_osm_features.Rd | 1 man/bbox_to_string.Rd | 1 man/getbb.Rd | 1 man/opq.Rd | 1 man/opq_around.Rd | 1 man/opq_csv.Rd |only man/opq_enclosing.Rd | 1 man/opq_osm_id.Rd | 41 +++ man/opq_string.Rd | 1 man/overpass_status.Rd | 1 src/common.h | 9 src/osmdata-data_frame.cpp | 67 +++-- src/osmdata.h | 27 +- tests/testthat/fixtures/osm-tags_center-adiff.osm |only tests/testthat/fixtures/osm-tags_center.osm |only tests/testthat/mock_csv |only tests/testthat/mock_csv_quotes |only tests/testthat/mock_tags/wiki/Map_Features.html | 229 ++++++++++++------- tests/testthat/mock_tags_fail/wiki/Map_Features.html | 160 ++++++++++++- tests/testthat/test-data_frame-osm.R | 121 +++++++++- tests/testthat/test-features.R | 66 +++-- tests/testthat/test-opq.R | 120 +++++++++ tests/testthat/test-osmdata.R | 29 +- 41 files changed, 1201 insertions(+), 318 deletions(-)
Title: Simplify 'ggplot2' Visualisation
Description: Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions.
Author: David Hodge [aut, cre] ,
Nik Mitchell [ctb]
Maintainer: David Hodge <davidhodge931@gmail.com>
Diff between ggblanket versions 1.7.0 dated 2023-03-06 and 1.8.0 dated 2023-04-24
ggblanket-1.7.0/ggblanket/man/pal_d3_mix.Rd |only ggblanket-1.7.0/ggblanket/man/pal_na.Rd |only ggblanket-1.7.0/ggblanket/man/pal_viridis_mix.Rd |only ggblanket-1.8.0/ggblanket/DESCRIPTION | 12 ggblanket-1.8.0/ggblanket/MD5 | 161 ++++------ ggblanket-1.8.0/ggblanket/NAMESPACE | 5 ggblanket-1.8.0/ggblanket/NEWS.md | 7 ggblanket-1.8.0/ggblanket/R/gg_area.R | 6 ggblanket-1.8.0/ggblanket/R/gg_bar.R | 6 ggblanket-1.8.0/ggblanket/R/gg_bin2d.R | 6 ggblanket-1.8.0/ggblanket/R/gg_blank.R | 6 ggblanket-1.8.0/ggblanket/R/gg_boxplot.R | 6 ggblanket-1.8.0/ggblanket/R/gg_col.R | 6 ggblanket-1.8.0/ggblanket/R/gg_crossbar.R | 6 ggblanket-1.8.0/ggblanket/R/gg_density.R | 6 ggblanket-1.8.0/ggblanket/R/gg_errorbar.R | 6 ggblanket-1.8.0/ggblanket/R/gg_freqpoly.R | 6 ggblanket-1.8.0/ggblanket/R/gg_function.R | 6 ggblanket-1.8.0/ggblanket/R/gg_hex.R | 6 ggblanket-1.8.0/ggblanket/R/gg_histogram.R | 6 ggblanket-1.8.0/ggblanket/R/gg_jitter.R | 6 ggblanket-1.8.0/ggblanket/R/gg_label.R | 6 ggblanket-1.8.0/ggblanket/R/gg_line.R | 6 ggblanket-1.8.0/ggblanket/R/gg_linerange.R | 6 ggblanket-1.8.0/ggblanket/R/gg_path.R | 6 ggblanket-1.8.0/ggblanket/R/gg_point.R | 6 ggblanket-1.8.0/ggblanket/R/gg_pointrange.R | 6 ggblanket-1.8.0/ggblanket/R/gg_polygon.R | 6 ggblanket-1.8.0/ggblanket/R/gg_qq.R | 6 ggblanket-1.8.0/ggblanket/R/gg_raster.R | 6 ggblanket-1.8.0/ggblanket/R/gg_rect.R | 6 ggblanket-1.8.0/ggblanket/R/gg_ribbon.R | 6 ggblanket-1.8.0/ggblanket/R/gg_segment.R | 6 ggblanket-1.8.0/ggblanket/R/gg_sf.R | 6 ggblanket-1.8.0/ggblanket/R/gg_smooth.R | 6 ggblanket-1.8.0/ggblanket/R/gg_step.R | 6 ggblanket-1.8.0/ggblanket/R/gg_text.R | 6 ggblanket-1.8.0/ggblanket/R/gg_theme.R | 4 ggblanket-1.8.0/ggblanket/R/gg_tile.R | 6 ggblanket-1.8.0/ggblanket/R/gg_violin.R | 6 ggblanket-1.8.0/ggblanket/R/pal.R | 37 -- ggblanket-1.8.0/ggblanket/README.md | 5 ggblanket-1.8.0/ggblanket/inst/doc/ggblanket.R | 11 ggblanket-1.8.0/ggblanket/inst/doc/ggblanket.Rmd | 11 ggblanket-1.8.0/ggblanket/inst/doc/ggblanket.html | 47 +- ggblanket-1.8.0/ggblanket/man/figures/README-unnamed-chunk-2-1.png |binary ggblanket-1.8.0/ggblanket/man/figures/ggiraph_screenshot.png |binary ggblanket-1.8.0/ggblanket/man/gg_area.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_bar.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_bin2d.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_blank.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_boxplot.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_col.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_crossbar.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_density.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_errorbar.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_freqpoly.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_function.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_hex.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_histogram.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_jitter.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_label.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_line.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_linerange.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_path.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_point.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_pointrange.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_polygon.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_qq.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_raster.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_rect.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_ribbon.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_segment.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_sf.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_smooth.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_step.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_text.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_theme.Rd | 4 ggblanket-1.8.0/ggblanket/man/gg_tile.Rd | 2 ggblanket-1.8.0/ggblanket/man/gg_violin.Rd | 2 ggblanket-1.8.0/ggblanket/man/ggblanket-package.Rd | 1 ggblanket-1.8.0/ggblanket/man/pal_default.Rd |only ggblanket-1.8.0/ggblanket/man/pal_na_default.Rd |only ggblanket-1.8.0/ggblanket/vignettes/ggblanket.Rmd | 11 84 files changed, 280 insertions(+), 292 deletions(-)
Title: Rmetrics - Analysing and Modelling Financial Assets
Description: A collection of functions to manage, to investigate and to analyze data sets of financial
assets from different points of view.
Author: Diethelm Wuertz [aut],
Tobias Setz [aut],
Yohan Chalabi [aut],
Stefan Theussl [aut, cre]
Maintainer: Stefan Theussl <Stefan.Theussl@R-project.org>
Diff between fAssets versions 3042.84 dated 2017-11-16 and 4023.85 dated 2023-04-24
ChangeLog | 13 +++++++++++++ DESCRIPTION | 26 ++++++++++++++------------ MD5 | 19 ++++++++++--------- NAMESPACE | 12 +++++++++++- R/assets-selection.R | 4 ++-- R/builtin-corpcor.R | 4 ++-- R/builtin-mstApe.R | 2 +- R/plot-mst.R | 2 +- R/plot-risk.R | 2 +- R/plot-similarity.R | 2 +- man/builtin.Rd |only 11 files changed, 56 insertions(+), 30 deletions(-)
Title: Translate R Expressions to 'MathML' and 'LaTeX'/'MathJax'
Description: Translate R expressions to 'MathML' or 'MathJax' so that
they can be rendered in 'rmarkdown' documents and shiny apps.
Author: Matthias Gondan [aut, cre, cph] ,
Irene Alfarone [ctb] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
Diff between mathml versions 0.7 dated 2023-04-21 and 0.8 dated 2023-04-24
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 6 +++++- README.md | 4 ++-- inst/doc/mathml.html | 13 ++++++------- inst/pl/mathml.pl | 7 ++++++- tests/testthat/test-mathml.R | 3 +-- 7 files changed, 30 insertions(+), 23 deletions(-)
More information about hierarchicalSets at CRAN
Permanent link
Title: Retrieve and Analyze Clinical Trials in Public Registers
Description: A system for querying, retrieving and analyzing
protocol- and results-related information on clinical trials from
four public registers, the 'European Union Clinical Trials Register'
('EUCTR', <https://www.clinicaltrialsregister.eu/>),
'ClinicalTrials.gov' ('CTGOV', <https://clinicaltrials.gov/>),
the 'ISRCTN' (<http://www.isrctn.com/>) and the
'European Union Clinical Trials Information System'
('CTIS', <https://euclinicaltrials.eu/>).
Trial information is downloaded, converted and stored in a database
('PostgreSQL', 'SQLite', 'DuckDB' or 'MongoDB'; via package 'nodbi').
Functions are included to identify deduplicated records,
to easily find and extract variables (fields) of interest even
from complex nesting as used by the registers, and
to update previous queries.
The package can be used for meta-analysis and trend-analysis of
the design and conduct as well as for results of clinical trials.
Author: Ralf Herold [aut, cre]
Maintainer: Ralf Herold <ralf.herold@mailbox.org>
Diff between ctrdata versions 1.12.1 dated 2023-03-29 and 1.13.0 dated 2023-04-24
DESCRIPTION | 10 MD5 | 45 +- NAMESPACE | 1 NEWS.md | 10 R/ctrdata-registers.R | 14 R/main.R | 425 +++++++++++-------- R/onload.R | 1 R/utils.R | 127 ++++- README.md | 204 ++++++--- inst/doc/ctrdata_install.pdf |binary inst/doc/ctrdata_retrieve.pdf |binary inst/doc/ctrdata_summarise.pdf |binary inst/tinytest/ctrdata_ctis.R | 60 +- inst/tinytest/ctrdata_euctr.R | 2 inst/tinytest/test_ctrdata_other_functions.R | 3 inst/tinytest/test_ctrdata_sqlite_ctis.R |only man/ctrGetQueryUrl.Rd | 8 man/ctrLoadQueryIntoDb.Rd | 12 man/ctrOpenSearchPagesInBrowser.Rd | 32 - man/ctrdata-registers.Rd | 13 man/dbFindIdsUniqueTrials.Rd | 9 man/figures/README-ctrdata_results_neuroblastoma.png |binary vignettes/ctrdata_install.Rmd | 23 - vignettes/ctrdata_retrieve.Rmd | 4 24 files changed, 629 insertions(+), 374 deletions(-)
Title: Generic PK/PD Simulation Platform CAMPSIS
Description: A generic, easy-to-use and intuitive
pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on R
packages 'rxode2', 'RxODE' and 'mrgsolve'. CAMPSIS provides an
abstraction layer over the underlying processes of writing a PK/PD
model, assembling a custom dataset and running a simulation. CAMPSIS
has a strong dependency to the R package 'campsismod', which allows to
read/write a model from/to files and adapt it further on the fly in
the R environment. Package 'campsis' allows the user to assemble a
dataset in an intuitive manner. Once the user’s dataset is ready, the
package is in charge of preparing the simulation, calling 'rxode2',
'RxODE' or 'mrgsolve' (at the user's choice) and returning the
results, for the given model, dataset and desired simulation settings.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsis versions 1.4.0 dated 2023-04-13 and 1.4.1 dated 2023-04-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 4 ++++ tests/testthat/testSimulateArguments.R | 10 +++++++++- tests/testthat/testUtils.R | 19 +++++++++++++++++-- 5 files changed, 37 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-23 2.4.0
2022-07-06 2.3.1
2021-09-15 2.3.0.1
2021-09-11 2.3.0
2021-08-03 2.2.1
2021-06-24 2.2.0
2021-03-21 2.1.0
2020-08-30 2.0.4
2020-07-28 2.0.3
2020-06-08 2.0.2
2020-05-05 2.0.1
2020-04-04 2.0.0
2019-01-27 1.0.1
2018-04-30 1.0
2017-12-14 0.4
2014-04-16 0.2
2013-10-08 0.1
Title: Statistical Analysis of Textual Data
Description: Provides a set of functions devoted to multivariate exploratory statistics on textual data. Classical methods such as correspondence analysis and agglomerative hierarchical clustering are available. Chronologically constrained agglomerative hierarchical clustering enriched with labelled-by-words trees is offered. Given a division of the corpus into parts, their characteristic words and documents are identified. Further, accessing to 'FactoMineR' functions is very easy. Two of them are relevant in textual domain. MFA() addresses multiple lexical table allowing applications such as dealing with multilingual corpora as well as simultaneously analyzing both open-ended and closed questions in surveys. See <http://xplortext.unileon.es> for examples.
Author: Monica Becue-Bertaut, Ramon Alvarez-Esteban, Josep-Anton Sanchez-Espigares, Belchin Kostov
Maintainer: Ramon Alvarez-Esteban <ramon.alvarez@unileon.es>
Diff between Xplortext versions 1.5.1 dated 2022-06-22 and 1.5.2 dated 2023-04-24
DESCRIPTION | 24 - MD5 | 35 + NAMESPACE | 1 R/LexChar.R | 831 ++++++++++++++++++++++++++++------------------- R/LexGalt.R | 66 ++- R/TextData.R | 9 R/plot.LexChar.R | 383 +++++++++++---------- R/plot.TextData.R | 466 ++++++++++++++++++++------ R/print.LexChar.R | 77 ++-- R/summary.LexChar.R | 89 +---- build/partial.rdb |binary inst/CITATION |only inst/Xplortext.pdf |binary man/LexChar.Rd | 18 - man/LexGalt.Rd | 4 man/Xplortext-package.Rd | 4 man/plot.LexCHCca.Rd | 10 man/plot.LexChar.Rd | 8 man/plot.TextData.Rd | 28 + 19 files changed, 1262 insertions(+), 791 deletions(-)
Title: Jacobi Theta Functions and Related Functions
Description: Evaluation of the Jacobi theta functions and related
functions: Weierstrass elliptic function, Weierstrass sigma function,
Weierstrass zeta function, Klein j-function, Dedekind eta function,
lambda modular function, Jacobi elliptic functions, Neville theta
functions, Eisenstein series, lemniscate elliptic functions, and
Dixon elliptic functions. Complex values of the variable are
supported.
Author: Stephane Laurent [aut, cre],
Mikael Fremling [aut]
Maintainer: Stephane Laurent <laurent_step@outlook.fr>
Diff between jacobi versions 2.2.0 dated 2023-03-24 and 2.3.0 dated 2023-04-24
DESCRIPTION | 9 +++++---- MD5 | 16 +++++++++++----- NAMESPACE | 8 ++++++++ NEWS.md | 7 +++++++ R/Dixon.R |only R/lemniscate.R |only README.md | 3 +++ man/Dixon.Rd |only man/lemniscate.Rd |only src/altjtheta.cpp | 6 +++--- tests/testthat/test-Dixon.R |only tests/testthat/test-lemniscate.R |only 12 files changed, 37 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-06 0.1.8
2020-09-22 0.1.7
2020-07-08 0.1.6
2020-07-01 0.1.5
2020-04-14 0.1.4
2020-02-06 0.1.2
2019-10-21 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-12-20 0.2.5.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-16 0.3.1
2020-04-07 0.3.0
2016-11-20 0.2.1
2016-10-20 0.2.0
2016-04-24 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-29 0.6.9
2022-09-05 0.6.8
2021-10-17 0.6.7
2021-09-02 0.6.5
2021-08-18 0.6.4
2021-08-09 0.6.2
Title: Local Adaptation and Evaluation of Raster Maps
Description: Local adaptation and evaluation of maps of continuous attributes in raster format by use of point location data.
Author: Kristin Persson [aut, cre, cph],
Mats Soderstrom [ctb, cph],
John Mutua [ctb]
Maintainer: Kristin Persson <kristin.persson@slu.se>
Diff between mapsRinteractive versions 1.0.1 dated 2020-12-01 and 2.0.1 dated 2023-04-24
mapsRinteractive-1.0.1/mapsRinteractive/R/CLAYr.R |only mapsRinteractive-1.0.1/mapsRinteractive/R/CLAYs.R |only mapsRinteractive-1.0.1/mapsRinteractive/R/spdf_from_extent.r |only mapsRinteractive-1.0.1/mapsRinteractive/README.md |only mapsRinteractive-1.0.1/mapsRinteractive/data |only mapsRinteractive-1.0.1/mapsRinteractive/inst |only mapsRinteractive-1.0.1/mapsRinteractive/man/CLAYr.Rd |only mapsRinteractive-1.0.1/mapsRinteractive/man/CLAYs.Rd |only mapsRinteractive-1.0.1/mapsRinteractive/man/spdf_from_extent.Rd |only mapsRinteractive-2.0.1/mapsRinteractive/DESCRIPTION | 40 - mapsRinteractive-2.0.1/mapsRinteractive/LICENSE | 4 mapsRinteractive-2.0.1/mapsRinteractive/MD5 | 70 - mapsRinteractive-2.0.1/mapsRinteractive/NAMESPACE | 8 mapsRinteractive-2.0.1/mapsRinteractive/R/check.R | 126 +-- mapsRinteractive-2.0.1/mapsRinteractive/R/evaluate.R | 6 mapsRinteractive-2.0.1/mapsRinteractive/R/even.R | 2 mapsRinteractive-2.0.1/mapsRinteractive/R/extentpolygon.r |only mapsRinteractive-2.0.1/mapsRinteractive/R/kth.R | 2 mapsRinteractive-2.0.1/mapsRinteractive/R/mri.R | 152 ++-- mapsRinteractive-2.0.1/mapsRinteractive/R/odd.R | 2 mapsRinteractive-2.0.1/mapsRinteractive/R/ordkrige.r | 35 mapsRinteractive-2.0.1/mapsRinteractive/R/regkrige.r | 50 - mapsRinteractive-2.0.1/mapsRinteractive/R/reskrige.r | 49 - mapsRinteractive-2.0.1/mapsRinteractive/man/check.Rd | 117 +-- mapsRinteractive-2.0.1/mapsRinteractive/man/e.Rd | 72 +- mapsRinteractive-2.0.1/mapsRinteractive/man/evaluate.Rd | 58 - mapsRinteractive-2.0.1/mapsRinteractive/man/even.Rd | 42 - mapsRinteractive-2.0.1/mapsRinteractive/man/extentpolygon.Rd |only mapsRinteractive-2.0.1/mapsRinteractive/man/fback.Rd | 36 - mapsRinteractive-2.0.1/mapsRinteractive/man/kth.Rd | 108 +-- mapsRinteractive-2.0.1/mapsRinteractive/man/mae.Rd | 62 - mapsRinteractive-2.0.1/mapsRinteractive/man/me.Rd | 60 - mapsRinteractive-2.0.1/mapsRinteractive/man/mri.Rd | 352 ++++------ mapsRinteractive-2.0.1/mapsRinteractive/man/odd.Rd | 42 - mapsRinteractive-2.0.1/mapsRinteractive/man/ordkrige.Rd | 175 ++-- mapsRinteractive-2.0.1/mapsRinteractive/man/r2.Rd | 56 - mapsRinteractive-2.0.1/mapsRinteractive/man/regkrige.Rd | 174 ++-- mapsRinteractive-2.0.1/mapsRinteractive/man/reskrige.Rd | 174 ++-- mapsRinteractive-2.0.1/mapsRinteractive/man/rmse.Rd | 62 - mapsRinteractive-2.0.1/mapsRinteractive/tests |only 40 files changed, 1077 insertions(+), 1059 deletions(-)
More information about mapsRinteractive at CRAN
Permanent link
Title: Conditional Manifold Learning
Description: Finds a low-dimensional embedding of high-dimensional data, conditioning on available manifold information. The current version supports conditional MDS (based on either conditional SMACOF in Bui (2021) <arXiv:2111.13646> or closed-form solution in Bui (2022) <doi:10.1016/j.patrec.2022.11.007>) and conditional ISOMAP in Bui (2021) <arXiv:2111.13646>.
Author: Anh Tuan Bui [aut, cre]
Maintainer: Anh Tuan Bui <atbui@u.northwestern.edu>
Diff between cml versions 0.1.0 dated 2022-11-15 and 0.2.2 dated 2023-04-24
DESCRIPTION | 8 ++-- MD5 | 24 ++++++------- R/ccor.R | 8 ++-- R/condIsomap.R | 4 +- R/condMDS.R | 8 ++-- R/condSmacof.R | 94 +++++++++++++++++++++++++++++++++++----------------- R/cz.R | 1 inst/CITATION | 16 ++++++-- man/cml-package.Rd | 4 +- man/condIsomap.Rd | 8 +++- man/condMDS.Rd | 8 +++- man/condMDSeigen.Rd | 2 - man/condSmacof.Rd | 6 ++- 13 files changed, 124 insertions(+), 67 deletions(-)
Title: Progress Bar for Parallel Tasks
Description: A simple interface in the form of R6 classes for executing tasks in
parallel, tracking their progress, and displaying accurate progress bars.
Author: Mihai Constantin [aut, cre]
Maintainer: Mihai Constantin <mihai@mihaiconstantin.com>
Diff between parabar versions 0.10.1 dated 2023-02-28 and 1.0.3 dated 2023-04-24
parabar-0.10.1/parabar/R/ProgressDecorator.R |only parabar-0.10.1/parabar/man/ProgressDecorator.Rd |only parabar-0.10.1/parabar/tests/testthat/test-dummy.R |only parabar-1.0.3/parabar/DESCRIPTION | 15 +- parabar-1.0.3/parabar/MD5 | 74 ++++++---- parabar-1.0.3/parabar/NAMESPACE | 2 parabar-1.0.3/parabar/NEWS.md | 64 ++++++++ parabar-1.0.3/parabar/R/AsyncBackend.R | 20 +- parabar-1.0.3/parabar/R/Context.R | 6 parabar-1.0.3/parabar/R/ContextFactory.R | 10 - parabar-1.0.3/parabar/R/Options.R | 61 +++++++- parabar-1.0.3/parabar/R/ProgressTrackingContext.R |only parabar-1.0.3/parabar/R/Service.R | 5 parabar-1.0.3/parabar/R/Specification.R | 42 ++++- parabar-1.0.3/parabar/R/TaskState.R | 2 parabar-1.0.3/parabar/R/Warning.R | 11 + parabar-1.0.3/parabar/R/logo.R | 15 +- parabar-1.0.3/parabar/README.md | 48 ++++-- parabar-1.0.3/parabar/build |only parabar-1.0.3/parabar/inst/doc |only parabar-1.0.3/parabar/man/AsyncBackend.Rd | 4 parabar-1.0.3/parabar/man/Context.Rd | 6 parabar-1.0.3/parabar/man/ContextFactory.Rd | 6 parabar-1.0.3/parabar/man/Options.Rd | 41 +++++ parabar-1.0.3/parabar/man/ProgressTrackingContext.Rd |only parabar-1.0.3/parabar/man/Service.Rd | 10 + parabar-1.0.3/parabar/man/Specification.Rd | 2 parabar-1.0.3/parabar/man/TaskState.Rd | 2 parabar-1.0.3/parabar/man/figures/parabar-design.png |binary parabar-1.0.3/parabar/man/par_sapply.Rd | 2 parabar-1.0.3/parabar/man/parabar-package.Rd | 10 - parabar-1.0.3/parabar/tests/testthat.R | 9 + parabar-1.0.3/parabar/tests/testthat/helpers.R |only parabar-1.0.3/parabar/tests/testthat/test-async-backend.R |only parabar-1.0.3/parabar/tests/testthat/test-backend-factory.R |only parabar-1.0.3/parabar/tests/testthat/test-backend.R |only parabar-1.0.3/parabar/tests/testthat/test-bar-factory.R |only parabar-1.0.3/parabar/tests/testthat/test-bar.R |only parabar-1.0.3/parabar/tests/testthat/test-context-factory.R |only parabar-1.0.3/parabar/tests/testthat/test-context.R |only parabar-1.0.3/parabar/tests/testthat/test-logo.R |only parabar-1.0.3/parabar/tests/testthat/test-options.R |only parabar-1.0.3/parabar/tests/testthat/test-package-setup.R |only parabar-1.0.3/parabar/tests/testthat/test-progress-tracking-context.R |only parabar-1.0.3/parabar/tests/testthat/test-service.R |only parabar-1.0.3/parabar/tests/testthat/test-specification.R |only parabar-1.0.3/parabar/tests/testthat/test-sync-backend.R |only parabar-1.0.3/parabar/tests/testthat/test-user-api.R |only parabar-1.0.3/parabar/vignettes |only 49 files changed, 360 insertions(+), 107 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-09-06 1.1
2020-08-24 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-14 0.3.0
2022-04-08 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-30 0.9.0
2021-01-11 0.8.4
2020-10-02 0.8.3
2020-06-26 0.8.1
Title: A Framework for Comparing the Performance of MCMC Samplers
Description: A framework for running sets of MCMC samplers on sets of distributions with a variety of tuning parameters, along with plotting functions to visualize the results of those simulations.
Author: Madeleine Thompson, except dchud.f and dchdd.f, which were written by G. W. Stewart.
Maintainer: Madeleine Thompson <madeleineth@gmail.com>
Diff between SamplerCompare versions 1.3.2 dated 2021-10-22 and 1.3.4 dated 2023-04-24
DESCRIPTION | 8 ++++---- MD5 | 18 +++++++++--------- R/comparison-plot.R | 11 +++++------ build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 10 ++-------- inst/doc/glue.pdf |binary inst/doc/sc-intro.pdf |binary src/init.h | 4 ++-- src/sampler-glue.c | 3 ++- 10 files changed, 24 insertions(+), 30 deletions(-)
More information about SamplerCompare at CRAN
Permanent link
Title: Benchmarking and Visualization Toolkit for Penalized Cox Models
Description: Creates nomogram visualizations for penalized Cox regression
models, with the support of reproducible survival model building,
validation, calibration, and comparison for high-dimensional data.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Miao-Zhu Li [aut],
Frank Harrell [ctb] ,
Sergej Potapov [ctb] ,
Werner Adler [ctb] ,
Matthias Schmid [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between hdnom versions 6.0.1 dated 2022-05-18 and 6.0.2 dated 2023-04-24
DESCRIPTION | 10 MD5 | 40 +-- NEWS.md | 9 R/1_1_model.R | 104 +++++---- README.md | 14 - build/vignette.rds |binary inst/AUTHORS | 19 + inst/CITATION | 16 - inst/doc/hdnom.R | 8 inst/doc/hdnom.Rmd | 8 inst/doc/hdnom.html | 191 +++++++----------- man/figures/README-kmplot-1.png |binary man/figures/README-model-comparison-1.png |binary man/figures/README-model-validation-calibration-1.png |binary man/figures/README-nomogram-1.png |binary man/figures/logo.png |binary man/fit_mcp.Rd | 8 man/fit_mnet.Rd | 10 man/fit_scad.Rd | 8 man/fit_snet.Rd | 8 vignettes/hdnom.Rmd | 8 21 files changed, 248 insertions(+), 213 deletions(-)
Title: Goodness-of-Fit Analysis for Categorical Data using the
Surrogate R-Squared
Description: To assess and compare the models' goodness of fit, R-squared is one of the most
popular measures. For categorical data analysis, however, no universally adopted
R-squared measure can resemble the ordinary least square (OLS) R-squared for
linear models with continuous data. This package implement the surrogate R-squared
measure for categorical data analysis, which is proposed in the study of Dungang Liu,
Xiaorui Zhu, Brandon Greenwell, and Zewei Lin (2022) <doi:10.1111/bmsp.12289>. It
can generate a point or interval measure of the surrogate R-squared. It can also
provide a ranking measure of the percentage contribution of each variable to the
overall surrogate R-squared. This ranking assessment allows one to check the
importance of each variable in terms of their explained variance. This package can
be jointly used with other existing R packages for variable selection and model
diagnostics in the model-building process.
Author: Xiaorui Zhu [aut, cre, cph],
Dungang Liu [ctb],
Zewei Lin [ctb],
Brandon Greenwell [ctb]
Maintainer: Xiaorui (Jeremy) Zhu <zhuxiaorui1989@gmail.com>
Diff between SurrogateRsq versions 0.2.0 dated 2023-02-15 and 0.2.1 dated 2023-04-24
SurrogateRsq-0.2.0/SurrogateRsq/R/rsq.R |only SurrogateRsq-0.2.0/SurrogateRsq/man/rsq.Rd |only SurrogateRsq-0.2.0/SurrogateRsq/tests/testthat/test-rsq.R |only SurrogateRsq-0.2.1/SurrogateRsq/DESCRIPTION | 40 +- SurrogateRsq-0.2.1/SurrogateRsq/MD5 | 42 +- SurrogateRsq-0.2.1/SurrogateRsq/NAMESPACE | 3 SurrogateRsq-0.2.1/SurrogateRsq/NEWS.md | 12 SurrogateRsq-0.2.1/SurrogateRsq/R/data.R | 48 +- SurrogateRsq-0.2.1/SurrogateRsq/R/surr_rsq.R | 55 ++- SurrogateRsq-0.2.1/SurrogateRsq/R/surr_rsq_ci.R | 59 ++- SurrogateRsq-0.2.1/SurrogateRsq/R/surr_rsq_rank.R | 22 - SurrogateRsq-0.2.1/SurrogateRsq/README.md | 182 ++++++++-- SurrogateRsq-0.2.1/SurrogateRsq/build/partial.rdb |binary SurrogateRsq-0.2.1/SurrogateRsq/build/vignette.rds |binary SurrogateRsq-0.2.1/SurrogateRsq/inst/doc/JSSpaper.pdf.asis | 2 SurrogateRsq-0.2.1/SurrogateRsq/man/RedWine.Rd | 28 - SurrogateRsq-0.2.1/SurrogateRsq/man/WhiteWine.Rd | 28 - SurrogateRsq-0.2.1/SurrogateRsq/man/print.Rd | 9 SurrogateRsq-0.2.1/SurrogateRsq/man/surr_rsq.Rd | 7 SurrogateRsq-0.2.1/SurrogateRsq/man/surr_rsq_rank.Rd | 6 SurrogateRsq-0.2.1/SurrogateRsq/tests/testthat/test-surr_rsq.R | 29 + SurrogateRsq-0.2.1/SurrogateRsq/tests/testthat/test-surr_rsq_ci.R |only SurrogateRsq-0.2.1/SurrogateRsq/tests/testthat/test-surr_rsq_rank.R | 110 ++---- SurrogateRsq-0.2.1/SurrogateRsq/vignettes/JSSpaper.pdf.asis | 2 24 files changed, 464 insertions(+), 220 deletions(-)