Title: Spatial Temporal Analysis of Moving Polygons
Description: Perform spatial temporal analysis of moving polygons; a
longstanding analysis problem in Geographic Information Systems. Facilitates
directional analysis, distance analysis, and some other simple functionality for
examining spatial-temporal patterns of moving polygons.
Author: Jed Long [aut, cre] ,
Colin Robertson [aut]
Maintainer: Jed Long <jed.long@uwo.ca>
Diff between stampr versions 0.2 dated 2018-04-18 and 0.3.0 dated 2023-04-27
stampr-0.2/stampr/R/extraStuff.R |only stampr-0.2/stampr/R/stamp.shape.r |only stampr-0.2/stampr/data/eyeshp.rda |only stampr-0.2/stampr/data/mpb_old.rdata |only stampr-0.2/stampr/man/stamp.shape.Rd |only stampr-0.3.0/stampr/DESCRIPTION | 26 stampr-0.3.0/stampr/MD5 | 76 - stampr-0.3.0/stampr/NAMESPACE | 19 stampr-0.3.0/stampr/NEWS | 8 stampr-0.3.0/stampr/R/eyeshp.r | 7 stampr-0.3.0/stampr/R/fire1.R | 46 - stampr-0.3.0/stampr/R/fire2.R | 18 stampr-0.3.0/stampr/R/glob.change.r | 9 stampr-0.3.0/stampr/R/katrina.r | 13 stampr-0.3.0/stampr/R/mpb.R | 5 stampr-0.3.0/stampr/R/stamp.direction.r | 1057 +++++++++++++---------- stampr-0.3.0/stampr/R/stamp.distance.r | 264 +++-- stampr-0.3.0/stampr/R/stamp.group.summary.r | 8 stampr-0.3.0/stampr/R/stamp.map.r | 131 +- stampr-0.3.0/stampr/R/stamp.multichange.r | 135 +- stampr-0.3.0/stampr/R/stamp.r | 433 ++++----- stampr-0.3.0/stampr/R/stamp.stgroup.summary.r | 26 stampr-0.3.0/stampr/R/stampr-package.r | 19 stampr-0.3.0/stampr/data/eyeshp.rdata |only stampr-0.3.0/stampr/data/fire1.RData |binary stampr-0.3.0/stampr/data/fire2.RData |binary stampr-0.3.0/stampr/data/katrina.rdata |binary stampr-0.3.0/stampr/data/mpb.rdata |binary stampr-0.3.0/stampr/man/eyeshp.Rd | 11 stampr-0.3.0/stampr/man/fire1.Rd | 51 - stampr-0.3.0/stampr/man/fire2.Rd | 24 stampr-0.3.0/stampr/man/glob.change.Rd | 68 - stampr-0.3.0/stampr/man/katrina.Rd | 75 - stampr-0.3.0/stampr/man/mpb.Rd | 7 stampr-0.3.0/stampr/man/stamp.Rd | 144 +-- stampr-0.3.0/stampr/man/stamp.direction.Rd | 164 +-- stampr-0.3.0/stampr/man/stamp.distance.Rd | 97 +- stampr-0.3.0/stampr/man/stamp.group.summary.Rd | 58 - stampr-0.3.0/stampr/man/stamp.map.Rd | 86 - stampr-0.3.0/stampr/man/stamp.multichange.Rd | 85 - stampr-0.3.0/stampr/man/stamp.stgroup.summary.Rd | 81 - stampr-0.3.0/stampr/man/stampr-package.Rd | 51 - 42 files changed, 1725 insertions(+), 1577 deletions(-)
Title: Radiation Safety
Description: Provides functions for radiation safety, also known as
"radiation protection" and "radiological control". The science of
radiation protection is called "health physics" and its engineering
functions are called "radiological engineering". Functions in this
package cover many of the computations needed by radiation safety
professionals. Examples include: obtaining updated calibration and
source check values for radiation monitors to account for radioactive
decay in a reference source, simulating instrument readings to better
understand measurement uncertainty, correcting instrument readings
for geometry and ambient atmospheric conditions. Many of these
functions are described in Johnson and Kirby (2011, ISBN-13:
978-1609134198). Utilities are also included for developing inputs
and processing outputs with radiation transport codes, such as MCNP,
a general-purpose Monte Carlo N-Particle code that can be used for
neutron, photon, electron, or coupled neutron/photon/electron transport
(Wern [...truncated...]
Author: Mark Hogue <mark.hogue.chp@gmail.com>
Maintainer: Mark Hogue <mark.hogue.chp@gmail.com>
Diff between radsafer versions 2.2.6 dated 2022-02-01 and 2.2.8 dated 2023-04-27
DESCRIPTION | 12 MD5 | 135 ++++--- NAMESPACE | 4 NEWS.md |only R/RN_Spec_Act.R | 27 - R/RN_index_screen.R | 2 R/RN_plot_search_results.R | 4 R/RN_search_alpha_by_E.R | 2 R/RN_search_beta_by_E.R | 2 R/disk_to_disk_solid_angle.R | 4 R/dk_correct.R | 15 R/hvl.R |only R/mcnp_matrix_rotations.R | 5 R/mcnp_plot_out_spec.R | 2 R/mcnp_scan_save.R | 2 R/mcnp_sdef_erg_hist.R |only R/mcnp_sdef_erg_line.R |only R/mcnp_si_sp_RD.R | 11 R/mcnp_si_sp_hist.R | 12 R/mcnp_si_sp_hist_scan.R | 12 R/photons_cs137_hist.R | 2 R/radsafer-package.R |only R/tau_estimate.R | 2 R/utils-pipe.R | 2 README.md | 286 +++++++++------- build/partial.rdb |only build/vignette.rds |binary inst/doc/Introduction_to_radsafer.R | 13 inst/doc/Introduction_to_radsafer.Rmd | 48 +- inst/doc/Introduction_to_radsafer.html | 514 +++++++++++++++++++++++------- man/RN_Spec_Act.Rd | 14 man/RN_bin_screen_phot.Rd | 4 man/RN_find_parent.Rd | 4 man/RN_index_screen.Rd | 2 man/RN_info.Rd | 2 man/RN_plot_search_results.Rd | 6 man/RN_plot_spectrum.Rd | 2 man/RN_save_spectrum.Rd | 4 man/RN_search_alpha_by_E.Rd | 2 man/RN_search_beta_by_E.Rd | 2 man/RN_search_phot_by_E.Rd | 2 man/air_dens_cf.Rd | 2 man/disk_to_disk_solid_angle.Rd | 10 man/dk_correct.Rd | 30 - man/dk_pct_to_num_half_life.Rd | 2 man/figures/README-unnamed-chunk-16-1.png |binary man/figures/README-unnamed-chunk-19-1.png |binary man/figures/README-unnamed-chunk-20-1.png |binary man/figures/README-unnamed-chunk-27-1.png |only man/figures/README-unnamed-chunk-8-1.png |binary man/figures/lifecycle-archived.svg |only man/figures/lifecycle-defunct.svg |only man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-maturing.svg |only man/figures/lifecycle-questioning.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/half_life_2pt.Rd | 4 man/hvl.Rd |only man/mcnp_cone_angle.Rd | 6 man/mcnp_est_nps.Rd | 2 man/mcnp_matrix_rotations.Rd | 8 man/mcnp_plot_out_spec.Rd | 16 man/mcnp_scan2plot.Rd | 8 man/mcnp_scan_save.Rd | 8 man/mcnp_sdef_erg_hist.Rd |only man/mcnp_sdef_erg_line.Rd |only man/mcnp_si_sp_RD.Rd | 12 man/mcnp_si_sp_hist.Rd | 18 - man/mcnp_si_sp_hist_scan.Rd | 16 man/neutron_geom_cf.Rd | 8 man/pipe.Rd | 2 man/radsafer-package.Rd |only man/rate_meter_sim.Rd | 20 - man/scaler_sim.Rd | 4 man/tau_estimate.Rd | 6 vignettes/Introduction_to_radsafer.Rmd | 48 +- 78 files changed, 930 insertions(+), 462 deletions(-)
Title: Presentation-Ready Data Summary and Analytic Result Tables
Description: Creates presentation-ready tables summarizing data
sets, regression models, and more. The code to create the tables is
concise and highly customizable. Data frames can be summarized with
any function, e.g. mean(), median(), even user-written functions.
Regression models are summarized and include the reference rows for
categorical variables. Common regression models, such as logistic
regression and Cox proportional hazards regression, are automatically
identified and the tables are pre-filled with appropriate column
headers.
Author: Daniel D. Sjoberg [aut, cre] ,
Joseph Larmarange [aut] ,
Michael Curry [aut] ,
Jessica Lavery [aut] ,
Karissa Whiting [aut] ,
Emily C. Zabor [aut] ,
Xing Bai [ctb],
Esther Drill [ctb] ,
Jessica Flynn [ctb] ,
Margie Hannum [ctb] ,
Stephanie Lobaugh [c [...truncated...]
Maintainer: Daniel D. Sjoberg <danield.sjoberg@gmail.com>
Diff between gtsummary versions 1.7.0 dated 2023-01-13 and 1.7.1 dated 2023-04-27
gtsummary-1.7.0/gtsummary/man/figures/README-tbl_merge_ex1.png |only gtsummary-1.7.0/gtsummary/man/figures/README-tbl_regression_print-1.png |only gtsummary-1.7.0/gtsummary/man/figures/README-tbl_summary_print-1.png |only gtsummary-1.7.1/gtsummary/DESCRIPTION | 16 gtsummary-1.7.1/gtsummary/MD5 | 321 - gtsummary-1.7.1/gtsummary/NAMESPACE | 1 gtsummary-1.7.1/gtsummary/NEWS.md | 38 gtsummary-1.7.1/gtsummary/R/add_ci.R | 49 gtsummary-1.7.1/gtsummary/R/add_global_p.R | 2 gtsummary-1.7.1/gtsummary/R/add_overall.R | 34 gtsummary-1.7.1/gtsummary/R/as_hux_table.R | 5 gtsummary-1.7.1/gtsummary/R/as_tibble.R | 17 gtsummary-1.7.1/gtsummary/R/style_number.R | 5 gtsummary-1.7.1/gtsummary/R/style_percent.R | 2 gtsummary-1.7.1/gtsummary/R/style_pvalue.R | 2 gtsummary-1.7.1/gtsummary/R/style_ratio.R | 17 gtsummary-1.7.1/gtsummary/R/sysdata.rda |binary gtsummary-1.7.1/gtsummary/R/tbl_cross.R | 4 gtsummary-1.7.1/gtsummary/R/tbl_custom_summary.R | 7 gtsummary-1.7.1/gtsummary/R/tbl_regression.R | 27 gtsummary-1.7.1/gtsummary/R/tbl_strata.R | 2 gtsummary-1.7.1/gtsummary/R/tbl_summary.R | 2 gtsummary-1.7.1/gtsummary/R/tbl_svysummary.R | 71 gtsummary-1.7.1/gtsummary/R/tbl_uvregression.R | 3 gtsummary-1.7.1/gtsummary/R/utils-tbl_summary.R | 7 gtsummary-1.7.1/gtsummary/README.md | 228 gtsummary-1.7.1/gtsummary/build/gtsummary.pdf |binary gtsummary-1.7.1/gtsummary/build/stage23.rdb |only gtsummary-1.7.1/gtsummary/build/vignette.rds |binary gtsummary-1.7.1/gtsummary/inst/CITATION | 12 gtsummary-1.7.1/gtsummary/inst/WORDLIST | 4 gtsummary-1.7.1/gtsummary/inst/doc/gallery.html | 2740 +++++----- gtsummary-1.7.1/gtsummary/inst/doc/gtsummary_definition.html | 1267 ++-- gtsummary-1.7.1/gtsummary/inst/doc/inline_text.html | 498 + gtsummary-1.7.1/gtsummary/inst/doc/rmarkdown.R | 8 gtsummary-1.7.1/gtsummary/inst/doc/rmarkdown.Rmd | 10 gtsummary-1.7.1/gtsummary/inst/doc/rmarkdown.html | 377 - gtsummary-1.7.1/gtsummary/inst/doc/tbl_regression.Rmd | 4 gtsummary-1.7.1/gtsummary/inst/doc/tbl_regression.html | 1496 +++-- gtsummary-1.7.1/gtsummary/inst/doc/tbl_summary.html | 2676 +++++---- gtsummary-1.7.1/gtsummary/inst/doc/themes.html | 1012 ++- gtsummary-1.7.1/gtsummary/man/as_tibble.gtsummary.Rd | 3 gtsummary-1.7.1/gtsummary/man/figures/README-tbl_merge_ex1-1.png |binary gtsummary-1.7.1/gtsummary/man/figures/README-tbl_regression_printa-1.png |binary gtsummary-1.7.1/gtsummary/man/figures/README-tbl_summary_print_extra-1.png |binary gtsummary-1.7.1/gtsummary/man/figures/README-tbl_summary_print_simple-1.png |binary gtsummary-1.7.1/gtsummary/man/figures/gt_output_formats.PNG |binary gtsummary-1.7.1/gtsummary/man/tbl_regression.Rd | 5 gtsummary-1.7.1/gtsummary/man/tbl_svysummary.Rd | 2 gtsummary-1.7.1/gtsummary/man/tests.Rd | 2 gtsummary-1.7.1/gtsummary/tests/spelling.R | 9 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_ci.md | 293 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_difference.md | 355 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_glance.md | 292 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_global_p.md | 453 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_n.md | 2533 +-------- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_nevent.md | 744 -- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_overall.md | 2595 ++------- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p.tbl_continuous.md | 208 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p.tbl_cross.md | 389 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p.tbl_summary.md | 1072 --- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p.tbl_survfit.md | 472 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p.tbl_svysummary.md | 782 -- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_p_test_safe.md | 9 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_q.md | 294 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_significance_stars.md | 120 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_stat_label.md | 1688 +----- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/add_vif.md | 309 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/as_gt.md | 488 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/as_hux_table.md | 19 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/as_kable.md | 2 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/as_kable_extra.md | 2 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/as_tibble.md | 90 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/bold_italicize_labels_levels.md | 259 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/bold_p.md | 138 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/combine_terms.md | 377 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/custom_tidiers.md | 285 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/filter_p.md | 105 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_caption.md | 90 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_column_alignment.md | 50 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_column_hide.md | 50 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_column_indent.md | 35 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_column_merge.md | 40 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_fmt_fun.md | 50 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_footnote.md | 193 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_header.md | 469 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_spanning_header.md | 109 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_table_body.md | 41 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/modify_table_styling.md | 220 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/remove_row_type.md | 120 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/select_helpers.md | 396 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/separate_p_footnotes.md | 61 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/set_gtsummary_theme.md | 500 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/sort_p.md | 219 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_butcher.md | 38 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_continuous.md | 85 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_cross.md | 2069 ------- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_custom_summary.md | 4 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_merge.md | 429 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_regression.md | 773 -- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_split.md | 2 gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_stack.md | 714 -- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_strata.md | 1237 ---- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_summary.md | 2396 +------- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_survfit.md | 300 - gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_svysummary.md | 1486 ----- gtsummary-1.7.1/gtsummary/tests/testthat/_snaps/tbl_uvregression.md | 733 -- gtsummary-1.7.1/gtsummary/tests/testthat/helper-dplyr_storms.R |only gtsummary-1.7.1/gtsummary/tests/testthat/test-add_ci.R | 82 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_difference.R | 33 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_glance.R | 10 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_global_p.R | 30 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_n.R | 54 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_nevent.R | 22 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_overall.R | 36 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_p.tbl_continuous.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_p.tbl_cross.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_p.tbl_summary.R | 24 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_p.tbl_survfit.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_p.tbl_svysummary.R | 13 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_q.R | 4 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_significance_stars.R | 6 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_stat_label.R | 28 gtsummary-1.7.1/gtsummary/tests/testthat/test-add_vif.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-as_hux_table.R | 11 gtsummary-1.7.1/gtsummary/tests/testthat/test-as_tibble.R | 8 gtsummary-1.7.1/gtsummary/tests/testthat/test-bold_italicize_labels_levels.R | 6 gtsummary-1.7.1/gtsummary/tests/testthat/test-bold_p.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-combine_terms.R | 22 gtsummary-1.7.1/gtsummary/tests/testthat/test-custom_tidiers.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-filter_p.R | 6 gtsummary-1.7.1/gtsummary/tests/testthat/test-inline_text.R | 4 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_caption.R | 6 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_column_alignment.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_column_hide.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_column_indent.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_column_merge.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_fmt_fun.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_footnote.R | 8 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_header.R | 12 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_spanning_header.R | 4 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_table_body.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-modify_table_styling.R | 10 gtsummary-1.7.1/gtsummary/tests/testthat/test-remove_row_type.R | 4 gtsummary-1.7.1/gtsummary/tests/testthat/test-select_helpers.R | 10 gtsummary-1.7.1/gtsummary/tests/testthat/test-separate_p_footnotes.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-set_gtsummary_theme.R | 36 gtsummary-1.7.1/gtsummary/tests/testthat/test-sort_p.R | 6 gtsummary-1.7.1/gtsummary/tests/testthat/test-style_number.R | 15 gtsummary-1.7.1/gtsummary/tests/testthat/test-style_ratio.R | 4 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_butcher.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_continuous.R | 2 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_cross.R | 32 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_custom_summary.R | 5 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_merge.R | 10 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_regression.R | 29 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_stack.R | 8 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_strata.R | 20 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_summary.R | 64 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_survfit.R | 20 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_svysummary.R | 49 gtsummary-1.7.1/gtsummary/tests/testthat/test-tbl_uvregression.R | 29 gtsummary-1.7.1/gtsummary/vignettes/rmarkdown.Rmd | 10 gtsummary-1.7.1/gtsummary/vignettes/tbl_regression.Rmd | 4 164 files changed, 11769 insertions(+), 27372 deletions(-)
Title: Methods for Fitting Network Time Series Models
Description: Simulation of, and fitting models for, Generalised Network Autoregressive (GNAR) time series models which take account of network structure, potentially with exogenous variables. Such models are described in Knight et al. (2020) <doi:10.18637/jss.v096.i05> and Nason and Wei (2021) <doi:10.1111/rssa.12875>.
Author: Kathryn Leeming [aut],
Guy Nason [aut],
Matt Nunes [aut, cre],
Marina Knight [ctb],
James Wei [aut]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between GNAR versions 1.1.1 dated 2020-11-11 and 1.1.2 dated 2023-04-27
DESCRIPTION | 18 ++++++++++-------- MD5 | 26 ++++++++++++++++---------- NAMESPACE | 6 +++++- R/GNARXdesign.R |only R/GNARXfit.R |only R/GNARXsim.R |only R/GNARdesign.R | 9 +++------ data/fiveNode.rda |binary data/gdp.rda |binary data/vswind.rda |binary inst/CHANGES | 5 +++++ man/AIC.GNARfit.Rd | 4 ++++ man/GNAR.Rd | 5 +++-- man/GNARXdesign.Rd |only man/GNARXfit.Rd |only man/GNARXsim.Rd |only man/vswind.Rd | 2 +- 17 files changed, 47 insertions(+), 28 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-26 0.1.2
2023-04-18 0.1.1
2023-04-17 0.1.0
Title: Elimination of Noisy Samples in Regression Datasets using Noise
Filters
Description: Traditional noise filtering methods aim at removing noisy samples from a classification dataset. This package adapts classic and recent filtering techniques to be used in regression problems. To do this, it uses the approach proposed in Martin (2021) [<doi:10.1109/ACCESS.2021.3123151>]. Thus, the goal of the implemented noise filters is to eliminate samples with noise in regression datasets.
Author: Juan Martin [aut, cre],
Jose A. Saez [aut],
Emilio Corchado [aut],
Pablo Morales [ctb] ,
Julian Luengo [ctb] ,
Luis P.F. Garcia [ctb] ,
Ana C. Lorena [ctb] ,
Andre C.P.L.F. de Carvalho [ctb] ,
Francisco Herrera [ctb]
Maintainer: Juan Martin <juanmartin@usal.es>
Diff between regfilter versions 1.0.2 dated 2022-03-10 and 1.0.3 dated 2023-04-27
DESCRIPTION | 8 MD5 | 78 +++---- NEWS.md | 6 R/regAENN.R | 340 +++++++++++++++---------------- R/regBBNR.R | 412 +++++++++++++++++++------------------- R/regCNN.R | 374 +++++++++++++++++----------------- R/regCVCF.R | 370 +++++++++++++++++----------------- R/regDF.R | 506 +++++++++++++++++++++++----------------------- R/regEF.R | 396 ++++++++++++++++++------------------ R/regENN.R | 338 +++++++++++++++---------------- R/regFMF.R | 346 ++++++++++++++++---------------- R/regGE.R | 354 ++++++++++++++++---------------- R/regHRRF.R | 458 +++++++++++++++++++++--------------------- R/regIPF.R | 450 ++++++++++++++++++++--------------------- R/regIRF.R | 352 ++++++++++++++++---------------- R/regRND.R | 518 ++++++++++++++++++++++++------------------------ R/regRNN.R | 386 +++++++++++++++++------------------ R/rfdata.R | 20 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/regfilter.R | 2 inst/doc/regfilter.Rmd | 118 ++++++++-- inst/doc/regfilter.html | 440 +++++++++++++++++++++++++++++++--------- man/print.rfdata.Rd | 4 man/regAENN.Rd | 4 man/regBBNR.Rd | 4 man/regCNN.Rd | 4 man/regCVCF.Rd | 4 man/regDF.Rd | 4 man/regEF.Rd | 4 man/regENN.Rd | 4 man/regFMF.Rd | 4 man/regGE.Rd | 4 man/regHRRF.Rd | 4 man/regIPF.Rd | 4 man/regIRF.Rd | 4 man/regRND.Rd | 4 man/regRNN.Rd | 4 man/summary.rfdata.Rd | 6 vignettes/regfilter.Rmd | 118 ++++++++-- 40 files changed, 3414 insertions(+), 3042 deletions(-)
Title: For Accessing the Old Bailey Open Data
Description: Fetch trial data from the Old Bailey Online API <https://www.oldbaileyonline.org/static/DocAPI.jsp>. Data is returned in an analysis-ready data frame with fields for metadata including (but not limited to) the names of the first person speakers, defendants, victims, their recorded genders, verdicts, punishments, crime locations, and dates. Optional parameters allow users to specify the number of results, whether these results contain key terms, and trial dates.
Author: Steph Buongiorno [aut, cre]
Maintainer: Steph Buongiorno <steph.buon@gmail.com>
Diff between oldbailey versions 1.0.0 dated 2023-03-26 and 1.1.0 dated 2023-04-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/parse_trials.R | 33 ++++++++++++++++++++++----------- 3 files changed, 27 insertions(+), 16 deletions(-)
Title: High-Dimensional Mediation Analysis
Description: Allows to estimate and test high-dimensional mediation effects based on advanced mediator screening and penalized regression techniques. Methods used in the package refer to Zhang H, Zheng Y, Zhang Z, Gao T, Joyce B, Yoon G, Zhang W, Schwartz J, Just A, Colicino E, Vokonas P, Zhao L, Lv J, Baccarelli A, Hou L, Liu L. Estimating and Testing High-dimensional Mediation Effects in Epigenetic Studies. Bioinformatics. (2016) <doi:10.1093/bioinformatics/btw351>. PMID: 27357171.
Author: Yinan Zheng [aut, cre],
Haixiang Zhang [aut],
Lifang Hou [aut],
Lei Liu [aut, cph]
Maintainer: Yinan Zheng <y-zheng@northwestern.edu>
Diff between HIMA versions 2.0.1 dated 2022-07-18 and 2.2.0 dated 2023-04-27
HIMA-2.0.1/HIMA/R/simHIMA.R |only HIMA-2.0.1/HIMA/man/simHIMA.Rd |only HIMA-2.2.0/HIMA/DESCRIPTION | 15 +++--- HIMA-2.2.0/HIMA/MD5 | 46 ++++++++++++------ HIMA-2.2.0/HIMA/NAMESPACE | 2 HIMA-2.2.0/HIMA/R/HIMA-package.R | 6 ++ HIMA-2.2.0/HIMA/R/example1.R |only HIMA-2.2.0/HIMA/R/example2.R |only HIMA-2.2.0/HIMA/R/example3.R |only HIMA-2.2.0/HIMA/R/example4.R |only HIMA-2.2.0/HIMA/R/hima.R | 64 +++++++++++++------------ HIMA-2.2.0/HIMA/R/hima2.R |only HIMA-2.2.0/HIMA/R/microHIMA.R | 65 +++++++++----------------- HIMA-2.2.0/HIMA/R/survHIMA.R | 89 ++++++++++++------------------------ HIMA-2.2.0/HIMA/R/utils.R | 19 ++++++- HIMA-2.2.0/HIMA/README.md | 16 ++++++ HIMA-2.2.0/HIMA/data |only HIMA-2.2.0/HIMA/inst/NEWS | 3 + HIMA-2.2.0/HIMA/inst/scripts |only HIMA-2.2.0/HIMA/man/Example1.Rd |only HIMA-2.2.0/HIMA/man/Example2.Rd |only HIMA-2.2.0/HIMA/man/Example3.Rd |only HIMA-2.2.0/HIMA/man/Example4.Rd |only HIMA-2.2.0/HIMA/man/HIMA-package.Rd | 6 ++ HIMA-2.2.0/HIMA/man/hima.Rd | 58 +++++++++++------------ HIMA-2.2.0/HIMA/man/hima2.Rd |only HIMA-2.2.0/HIMA/man/microHIMA.Rd | 45 ++++-------------- HIMA-2.2.0/HIMA/man/survHIMA.Rd | 66 +++++--------------------- 28 files changed, 228 insertions(+), 272 deletions(-)
Title: Genetic and Isotopic Assignment Accounting for Habitat
Suitability
Description: Tools for using genetic markers, stable isotope data, and habitat
suitability data to calculate posterior probabilities of breeding origin of
migrating birds.
Author: Eric C. Anderson [cre, aut]
Maintainer: Eric C. Anderson <eric.anderson@noaa.gov>
Diff between gaiah versions 0.0.4 dated 2020-05-18 and 0.0.5 dated 2023-04-27
DESCRIPTION | 12 ++++++------ MD5 | 10 ++++++---- NEWS.md | 4 ++++ R/data.R | 13 ++++++++++++- README.md | 42 ++++++++++++++++++++++++++++-------------- data/wrld_simpl.rda |only man/wrld_simpl.Rd |only 7 files changed, 56 insertions(+), 25 deletions(-)
Title: Formal Concept Analysis
Description: Provides tools to perform fuzzy formal concept
analysis, presented in Wille (1982) <doi:10.1007/978-3-642-01815-2_23>
and in Ganter and Obiedkov (2016) <doi:10.1007/978-3-662-49291-8>. It
provides functions to load and save a formal context, extract its
concept lattice and implications. In addition, one can use the
implications to compute semantic closures of fuzzy sets and, thus,
build recommendation systems.
Author: Domingo Lopez Rodriguez [aut, cre]
,
Angel Mora [aut],
Jesus Dominguez [aut],
Ana Villalon [aut],
Ian Johnson [ctb]
Maintainer: Domingo Lopez Rodriguez <dominlopez@uma.es>
Diff between fcaR versions 1.2.0 dated 2022-09-04 and 1.2.1 dated 2023-04-27
DESCRIPTION | 8 MD5 | 71 +-- NAMESPACE | 1 NEWS.md | 13 R/RcppExports.R | 72 +++ R/brackets_R6.R | 3 R/clarify_matrix.R | 17 R/context_to_latex.R | 222 +++++++++-- R/export_to_latex.R | 19 - R/formal_context.R | 293 +++++++++++++-- R/format_label.R | 12 R/holds_respects.R | 5 R/lattice_plot.R | 5 R/messages.R |only R/options.R | 7 R/to_fraction.R | 23 + README.md | 70 ++- build/vignette.rds |binary inst/doc/arules.html | 362 +++++++++++++++---- inst/doc/concept_lattice.html | 509 ++++++++++++++++++++------ inst/doc/conceptual-scaling.html | 502 ++++++++++++++++++++------ inst/doc/extending_equivalence.html | 372 +++++++++++++++---- inst/doc/implications.html | 408 +++++++++++++++++---- man/FormalContext.Rd | 175 ++++++++- src/Logics.cpp |only src/Logics.h |only src/RcppExports.cpp | 221 ++++++++++- src/aux_functions.cpp | 1 src/aux_functions.h | 5 src/nextclosure.cpp | 338 +++++++++++++---- src/set_operations_galois.cpp | 641 +++++++++++++++++++++++----------- src/set_operations_galois.h | 112 ++++- src/vector_operations.cpp | 39 ++ tests/testthat/Rplots.pdf |binary tests/testthat/test-concept_lattice.R | 10 tests/testthat/test-formal_context.R | 58 ++- tests/testthat/test-implication_set.R | 31 + tests/testthat/test-sparse_set.R | 20 + 38 files changed, 3638 insertions(+), 1007 deletions(-)
Title: Adjacency-Constrained Clustering of a Block-Diagonal Similarity
Matrix
Description: Implements a constrained version of hierarchical agglomerative
clustering, in which each observation is associated to a position, and only
adjacent clusters can be merged. Typical application fields in
bioinformatics include Genome-Wide Association Studies or Hi-C data
analysis, where the similarity between items is a decreasing function of
their genomic distance. Taking advantage of this feature, the implemented
algorithm is time and memory efficient. This algorithm is described in
Ambroise et al (2019) <doi:10.1186/s13015-019-0157-4>.
Author: Christophe Ambroise [aut],
Shubham Chaturvedi [aut],
Alia Dehman [aut],
Pierre Neuvial [aut, cre],
Guillem Rigaill [aut],
Nathalie Vialaneix [aut],
Gabriel Hoffman [aut]
Maintainer: Pierre Neuvial <pierre.neuvial@math.univ-toulouse.fr>
Diff between adjclust versions 0.6.6 dated 2022-09-14 and 0.6.7 dated 2023-04-27
DESCRIPTION | 16 MD5 | 77 - NAMESPACE | 12 NEWS.md | 12 R/adjclust.R | 90 + R/chac.R | 59 - R/helpers.R | 68 + R/hicClust.R | 23 R/plotSim.R | 673 +++++++----- R/snpClust.R | 17 README.md | 15 build/partial.rdb |only build/vignette.rds |binary inst/CITATION | 81 - inst/doc/hicClust.html | 512 ++++++--- inst/doc/notesCHAC.Rmd | 10 inst/doc/notesCHAC.html | 602 ++++++++-- inst/doc/snpClust.html | 528 ++++++--- man/adjClust.Rd | 61 - man/plotSim.Rd | 123 +- man/select.Rd | 2 src/Makevars | 2 src/Makevars.win | 2 tests/testthat/test_adjClust.R |only tests/testthat/test_adjclust_equivalentTo_hclust.R | 2 tests/testthat/test_adjclust_equivalentTo_rioja.R | 2 tests/testthat/test_ascendingCompatibility.R | 2 tests/testthat/test_chac.R |only tests/testthat/test_correct.R | 2 tests/testthat/test_corrected_plot.R | 2 tests/testthat/test_cuttree.R | 2 tests/testthat/test_dense_sparse_comparison.R | 12 tests/testthat/test_final_height.R | 2 tests/testthat/test_hicClust.R | 49 tests/testthat/test_modify.R | 22 tests/testthat/test_plotSim.R | 112 + tests/testthat/test_similarity_equivalentTo_dissimilarity.R | 2 tests/testthat/test_snpClust.R | 30 tests/testthat/test_snpClust_NA-in-LD.R | 6 tests/testthat/test_warning_with_decreasing_height_plots.R | 2 vignettes/notesCHAC.Rmd | 10 41 files changed, 2213 insertions(+), 1031 deletions(-)
Title: Measurement Units for R Vectors
Description: Support for measurement units in R vectors, matrices
and arrays: automatic propagation, conversion, derivation
and simplification of units; raising errors in case of unit
incompatibility. Compatible with the POSIXct, Date and difftime
classes. Uses the UNIDATA udunits library and unit database for
unit compatibility checking and conversion.
Documentation about 'units' is provided in the paper by Pebesma, Mailund &
Hiebert (2016, <doi:10.32614/RJ-2016-061>), included in this package as a
vignette; see 'citation("units")' for details.
Author: Edzer Pebesma [aut, cre] ,
Thomas Mailund [aut],
Tomasz Kalinowski [aut],
James Hiebert [ctb],
Inaki Ucar [aut] ,
Thomas Lin Pedersen [ctb]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between units versions 0.8-1 dated 2022-12-10 and 0.8-2 dated 2023-04-27
DESCRIPTION | 11 MD5 | 70 NAMESPACE | 1 NEWS.md | 24 R/RcppExports.R | 4 R/arith.R | 82 R/conversion.R | 13 R/database.R | 2 R/math.R | 2 R/mixed.R | 3 R/scale_units.R | 14 R/udunits.R | 1 build/vignette.rds |binary configure | 26 inst/doc/measurement_units_in_R.R | 6 inst/doc/measurement_units_in_R.Rmd | 19 inst/doc/measurement_units_in_R.html | 2088 ++++----------------- inst/doc/units.R | 4 inst/doc/units.Rmd | 13 inst/doc/units.html | 1031 ++++------ man/scale_units.Rd | 8 man/units.Rd | 2 src/RcppExports.cpp | 15 src/udunits.cpp | 51 tests/testthat/_snaps/plot/ggplot2-default.svg |only tests/testthat/_snaps/plot/ggplot2-transformed.svg |only tests/testthat/test_arith.R | 55 tests/testthat/test_conversion.R | 31 tests/testthat/test_math.R | 1 tests/testthat/test_misc.R | 2 tests/testthat/test_mixed.R | 13 tests/testthat/test_plot.R | 14 tests/testthat/test_tidyverse.R | 14 tests/testthat/test_unit_creation.R | 82 tests/testthat/test_user_conversion.R | 2 vignettes/measurement_units_in_R.Rmd | 19 vignettes/units.Rmd | 13 37 files changed, 1356 insertions(+), 2380 deletions(-)
More information about fractalRegression at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-09-13 0.2.0
2017-01-04 0.1.1
2017-01-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-07 0.1.1
2021-11-02 0.1.0
Title: Parse XML
Description: Work with XML files using a simple, consistent interface.
Built on top of the 'libxml2' C library.
Author: Hadley Wickham [aut, cre],
Jim Hester [aut],
Jeroen Ooms [aut],
RStudio [cph, fnd],
R Foundation [ctb]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between xml2 versions 1.3.3 dated 2021-11-30 and 1.3.4 dated 2023-04-27
xml2-1.3.3/xml2/src/Makevars.ucrt |only xml2-1.3.3/xml2/tests/testthat/helper-version.R |only xml2-1.3.3/xml2/vignettes/releases |only xml2-1.3.4/xml2/DESCRIPTION | 39 +- xml2-1.3.4/xml2/MD5 | 40 +- xml2-1.3.4/xml2/NAMESPACE | 1 xml2-1.3.4/xml2/NEWS.md | 6 xml2-1.3.4/xml2/R/S4.R | 26 - xml2-1.3.4/xml2/R/xml_find.R | 3 xml2-1.3.4/xml2/R/xml_text.R | 3 xml2-1.3.4/xml2/README.md | 3 xml2-1.3.4/xml2/build/vignette.rds |binary xml2-1.3.4/xml2/build/xml2.pdf |binary xml2-1.3.4/xml2/inst/doc/modification.html | 384 +++++++++++++++++++----- xml2-1.3.4/xml2/man/download_xml.Rd | 3 xml2-1.3.4/xml2/man/oldclass.Rd | 19 - xml2-1.3.4/xml2/man/xml_text.Rd | 3 xml2-1.3.4/xml2/src/Makevars.win | 6 xml2-1.3.4/xml2/src/connection.cpp | 1 xml2-1.3.4/xml2/src/init.c | 10 xml2-1.3.4/xml2/tests/testthat/setup.R |only xml2-1.3.4/xml2/tests/testthat/test-read-xml.R | 31 - xml2-1.3.4/xml2/tests/testthat/test-url.R | 17 - 23 files changed, 392 insertions(+), 203 deletions(-)
Title: Variable Selection Methods Including an Exposure Variable
Description: Utilizes multiple variable selection methods to estimate Average Treatment Effect.
Author: Alex Martinez [aut, cre],
Andrew Chapple [aut]
Maintainer: Alex Martinez <ahmartinez283@gmail.com>
Diff between VARSELECTEXPOSURE versions 1.0.2 dated 2023-04-20 and 1.0.3 dated 2023-04-27
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- R/FORWARD_EXPOSURE.R | 2 +- R/RcppExports.R | 6 ++++-- R/STEPWISE_EXPOSURE.R | 2 +- man/BACKWARD_EXPOSURE.Rd | 4 ++-- man/FORWARD_EXPOSURE.Rd | 6 +++--- man/MCMC_LOGIT_KEEP.Rd | 6 ++++-- man/STEPWISE_EXPOSURE.Rd | 6 +++--- src/VARSELECTEXPOSURE.cpp | 6 ++++-- 10 files changed, 34 insertions(+), 28 deletions(-)
More information about VARSELECTEXPOSURE at CRAN
Permanent link
Title: Classify Occurrences by Confidence Levels in the Species ID
Description: Classify occurrence records based on confidence
levels of species identification. In addition, implement tools to filter
occurrences inside grid cells and to manually check for possibles errors with
an interactive shiny application.
Author: Arthur Vinicius Rodrigues [aut, cre]
,
Gabriel Nakamura [aut] ,
Leandro Duarte [aut]
Maintainer: Arthur Vinicius Rodrigues <rodrigues.arthur.v@gmail.com>
Diff between naturaList versions 0.5.0 dated 2022-04-20 and 0.5.1 dated 2023-04-27
DESCRIPTION | 15 +-- MD5 | 30 +++--- NAMESPACE | 33 +++--- NEWS.md | 4 R/classify_occ.R | 1 R/create_spec_df.R | 6 + R/env_grid_filter.R |only build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 29 ++---- inst/doc/naturaList_grid_filter_vignette.html | 124 +++++++++++++------------- inst/doc/naturaList_map_module_vignette.html | 124 +++++++++++++------------- inst/doc/natutaList_clean_eval_vignette.html | 124 +++++++++++++------------- inst/doc/natutaList_vignette.html | 124 +++++++++++++------------- man/classify_occ.Rd | 4 man/env_grid_filter.Rd |only tests |only 17 files changed, 329 insertions(+), 289 deletions(-)
Title: Causal Moderated Mediation Analysis
Description: Causal moderated mediation analysis using the methods proposed by Qin and Wang (2022). Causal moderated mediation analysis is crucial for investigating how, for whom, and where a treatment is effective by assessing the heterogeneity of mediation mechanism across individuals and contexts. This package enables researchers to estimate and test the conditional and moderated mediation effects, assess their sensitivity to unmeasured pre-treatment confounding, and visualize the results. The package is built based on the quasi-Bayesian Monte Carlo method, because it has relatively better performance at small sample sizes, and its running speed is the fastest. The package is applicable to a treatment of any scale, a binary or continuous mediator, a binary or continuous outcome, and one or more moderators of any scale.
Author: Xu Qin [aut, cre, cph],
Lijuan Wang [ctb]
Maintainer: Xu Qin <xuqin@pitt.edu>
Diff between moderate.mediation versions 0.0.3 dated 2023-04-26 and 0.0.4 dated 2023-04-27
DESCRIPTION | 6 MD5 | 14 R/moderate.mediation.R | 1707 ++++++++++++++++++++++++++++++++++++++++++++++++- man/modmed.Rd | 4 man/modmed.plot.Rd | 4 man/modmed.sens.Rd | 4 man/sens.plot.Rd | 7 man/summary_modmed.Rd | 4 8 files changed, 1695 insertions(+), 55 deletions(-)
More information about moderate.mediation at CRAN
Permanent link
Title: Microbiome Mixture Analysis
Description: Evaluate whether a microbiome sample is a mixture of two
samples, by fitting a model for the number of read counts as a
function of single nucleotide polymorphism (SNP) allele and the
genotypes of two potential source samples.
Lobo et al. (2021) <doi:10.1093/g3journal/jkab308>.
Author: Karl W Broman [aut, cre]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between mbmixture versions 0.2-5 dated 2020-10-22 and 0.4 dated 2023-04-27
DESCRIPTION | 12 +- MD5 | 14 +- NEWS.md | 5 README.md | 13 +- build/vignette.rds |binary data/mbmixdata.RData |binary inst/CITATION | 30 ++--- inst/doc/mbmixture.html | 282 +++++++++++++++++++++++------------------------- 8 files changed, 179 insertions(+), 177 deletions(-)
Title: IMAGing engINEs, Tools for Application of Image Filters to Data
Matrices
Description: Provides fast application of image filters to data matrices,
using R and C++ algorithms.
Author: Wencheng Lau-Medrano [aut, cre]
Maintainer: Wencheng Lau-Medrano <luis.laum@gmail.com>
Diff between imagine versions 1.5.4 dated 2022-10-20 and 2.0.0 dated 2023-04-27
DESCRIPTION | 14 MD5 | 37 +- NAMESPACE | 1 NEWS.md |only R/RcppExports.R | 13 R/imagine-internal.R | 105 ------- R/imagine-main.R | 187 +++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/vignette.R | 92 +++--- inst/doc/vignette.Rmd | 116 ++++--- inst/doc/vignette.html | 178 +++++------- man/basic2DFilter.Rd | 136 ++++----- man/contextualMF.Rd | 79 ++--- man/convolutions.Rd | 138 ++++----- man/image-package.Rd | 40 +- man/wbImage.Rd | 32 +- src/RcppExports.cpp | 46 +-- src/engines.cpp | 719 +++++++++++++++---------------------------------- vignettes/vignette.Rmd | 116 ++++--- 20 files changed, 869 insertions(+), 1180 deletions(-)
Title: Crops an Image to a Circle
Description: Images are cropped to a circle with a transparent background. The function takes a
vector of images, either local or from a link, and circle crops the image. Paths to the
cropped image are returned for plotting with 'ggplot2'.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>
Diff between cropcircles versions 0.2.2 dated 2023-04-20 and 0.2.2.1 dated 2023-04-27
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 4 ++++ R/helpers.R | 5 +---- 4 files changed, 11 insertions(+), 10 deletions(-)
Title: Phylogenetic Analysis with Discrete Character Data
Description: Reconstruct phylogenetic trees from discrete data.
Inapplicable character states are handled using the algorithm of Brazeau,
Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083> with the "Morphy"
library, under equal or implied step weights.
Contains a "shiny" user interface for interactive tree search and exploration
of results, including character visualization, rogue taxon detection,
tree space mapping, and cluster consensus trees (Smith 2022a, b)
<doi:10.1093/sysbio/syab099>, <doi:10.1093/sysbio/syab100>.
Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>,
Successive Approximations (Farris, 1969) <doi:10.2307/2412182>
and custom optimality criteria are implemented.
Author: Martin R. Smith [aut, cre, cph]
,
Martin Brazeau [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeSearch versions 1.3.1 dated 2023-03-29 and 1.3.2 dated 2023-04-27
DESCRIPTION | 12 +- MD5 | 32 ++--- NAMESPACE | 1 NEWS.md | 6 + R/AdditionTree.R | 15 +- R/MaximizeParsimony.R | 1 build/partial.rdb |binary build/vignette.rds |binary inst/Parsimony/app.R | 44 +++++-- inst/doc/custom.html | 235 +++++++++++++++++++++--------------------- inst/doc/getting-started.html | 4 inst/doc/profile-scores.html | 4 inst/doc/profile.html | 4 inst/doc/tree-search.html | 4 inst/doc/tree-space.html | 4 man/AdditionTree.Rd | 4 man/WhenFirstHit.Rd | 94 ++++++++-------- 17 files changed, 248 insertions(+), 216 deletions(-)
Title: Spherical Geometry Operators Using the S2 Geometry Library
Description: Provides R bindings for Google's s2 library for geometric calculations on
the sphere. High-performance constructors and exporters provide high compatibility
with existing spatial packages, transformers construct new geometries from existing
geometries, predicates provide a means to select geometries based on spatial
relationships, and accessors extract information about geometries.
Author: Dewey Dunnington [aut] ,
Edzer Pebesma [aut, cre] ,
Ege Rubak [aut],
Jeroen Ooms [ctb] ,
Google, Inc. [cph]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between s2 versions 1.1.2 dated 2023-01-12 and 1.1.3 dated 2023-04-27
DESCRIPTION | 8 +++---- MD5 | 38 +++++++++++++++++------------------ NAMESPACE | 1 NEWS.md | 25 ++++++++++++++--------- R/s2-bounds.R | 2 - R/s2-cell.R | 20 +++++++++++++++++- R/zzz.R | 2 + build/partial.rdb |binary man/s2_bounds_cap.Rd | 4 --- man/s2_cell_is_valid.Rd | 2 - src/Makevars.in | 1 src/Makevars.ucrt | 1 src/absl/base/config.h | 4 +-- src/absl/base/internal/raw_logging.h | 16 +++++++------- src/absl/strings/cord.h | 11 ++++++++-- src/s2geography/build.cc | 8 +++---- src/s2geography/constructor.h | 12 +++++------ tests/testthat/test-s2-cell.R | 7 ++++++ tests/testthat/test-s2-geography.R | 6 +++-- tests/testthat/test-s2-lnglat.R | 2 - 20 files changed, 107 insertions(+), 63 deletions(-)
Title: Create, Modify and Analyse Phylogenetic Trees
Description: Efficient implementations of functions for the creation,
modification and analysis of phylogenetic trees.
Applications include:
generation of trees with specified shapes;
tree rearrangement;
analysis of tree shape;
rooting of trees and extraction of subtrees;
calculation and depiction of split support;
plotting the position of rogue taxa (Klopfstein & Spasojevic 2019)
<doi:10.1371/journal.pone.0212942>;
calculation of ancestor-descendant relationships,
of 'stemwardness' (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>,
and of tree balance (Mir et al. 2013) <doi:10.1016/j.mbs.2012.10.005>;
artificial extinction (Asher & Smith, 2022) <doi:10.1093/sysbio/syab072>;
import and export of trees from Newick, Nexus (Maddison et al. 1997)
<doi:10.1093/sysbio/46.4.590>,
and TNT <https://www.lillo.org.ar/phylogeny/tnt/> formats;
and analysis of splits and cladistic information.
Author: Martin R. Smith [aut, cre, cph]
,
Emmanuel Paradis [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeTools versions 1.9.1 dated 2023-03-20 and 1.9.2 dated 2023-04-27
DESCRIPTION | 8 MD5 | 178 +++++++++---------- NAMESPACE | 1 NEWS.md | 48 ++--- R/RoguePlot.R | 46 ++++ R/helper_functions.R | 16 - R/parse_files.R | 21 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/filesystem-navigation.html | 22 +- inst/doc/load-data.html | 98 +++++----- inst/doc/load-trees.html | 24 +- inst/extdata/input/notes.nex | 2 man/AddTip.Rd | 3 man/ApeTime.Rd | 3 man/ArtificialExtinction.Rd | 3 man/CharacterInformation.Rd | 3 man/CladisticInfo.Rd | 3 man/ClusterTable-methods.Rd | 3 man/ClusterTable.Rd | 3 man/CompatibleSplits.Rd | 3 man/Consensus.Rd | 3 man/ConsensusWithout.Rd | 3 man/ConstrainedNJ.Rd | 3 man/DoubleFactorial.Rd | 3 man/DropTip.Rd | 3 man/EdgeAncestry.Rd | 3 man/EdgeDistances.Rd | 3 man/EnforceOutgroup.Rd | 3 man/GenerateTree.Rd | 3 man/Hamming.Rd | 3 man/ImposeConstraint.Rd | 3 man/KeptPaths.Rd | 3 man/KeptVerts.Rd | 3 man/LeafLabelInterchange.Rd | 3 man/ListAncestors.Rd | 3 man/MRCA.Rd | 3 man/MSTEdges.Rd | 3 man/MakeTreeBinary.Rd | 3 man/MatrixToPhyDat.Rd | 3 man/NDescendants.Rd | 3 man/NJTree.Rd | 3 man/NPartitionPairs.Rd | 3 man/NRooted.Rd | 3 man/NSplits.Rd | 3 man/NodeDepth.Rd | 3 man/NodeOrder.Rd | 3 man/NonDuplicateRoot.Rd | 3 man/PairwiseDistances.Rd | 3 man/PathLengths.Rd | 3 man/PhyToString.Rd | 3 man/ReadCharacters.Rd | 3 man/ReadTntTree.Rd | 3 man/Renumber.Rd | 3 man/RenumberTips.Rd | 3 man/RightmostCharacter.Rd | 3 man/RoguePlot.Rd | 20 +- man/RootNode.Rd | 3 man/RootTree.Rd | 3 man/SampleOne.Rd | 3 man/SortTree.Rd | 3 man/SpectrumLegend.Rd | 16 - man/SplitFrequency.Rd | 3 man/SplitInformation.Rd | 3 man/SplitMatchProbability.Rd | 3 man/Splits.Rd | 3 man/SplitsInBinaryTree.Rd | 3 man/Stemwardness.Rd | 3 man/Subsplit.Rd | 3 man/Subtree.Rd | 3 man/TipLabels.Rd | 3 man/TotalCopheneticIndex.Rd | 3 man/TreeIsRooted.Rd | 3 man/TreeNumber.Rd | 3 man/TreeShape.Rd | 3 man/TreesMatchingSplit.Rd | 3 man/TreesMatchingTree.Rd | 3 man/TrivialSplits.Rd | 3 man/UnrootedTreesMatchingSplit.Rd | 3 man/UnshiftTree.Rd | 3 man/WriteTntCharacters.Rd | 3 man/as.Newick.Rd | 3 man/dot-RandomParent.Rd | 3 man/sapply64.Rd | 3 man/sort.multiPhylo.Rd | 3 tests/testthat/_snaps/RoguePlot/rogueplot-poly.svg | 6 tests/testthat/_snaps/RoguePlot/rogueplot-simple.svg | 8 tests/testthat/_snaps/RoguePlot/rogueplot-trees1.svg | 12 + tests/testthat/test-RoguePlot.R | 14 + tests/testthat/test-parsers.R | 15 - 90 files changed, 467 insertions(+), 298 deletions(-)
Title: Powerful User Interface to Build Equations and Add Symbols
Description: User Interface for adding symbols, smileys, arrows, building mathematical equations using 'LaTeX' or 'r2symbols'. Built for use in development of 'Markdown' and 'Shiny' Outputs.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between symbol.equation.gpt versions 1.1.1 dated 2023-03-21 and 1.1.2 dated 2023-04-27
DESCRIPTION | 13 +++----- MD5 | 17 +++++----- NAMESPACE | 1 NEWS.md | 6 +++ R/aaa.R | 1 R/main.R | 52 ++++++++++++++++++++++---------- README.md | 47 +++++++++++++++------------- inst/doc/using_equations_symbols_r.html | 4 +- inst/lib/req_pack.ob |binary man/equationSymbol.Widget.Rd |only 10 files changed, 86 insertions(+), 55 deletions(-)
More information about symbol.equation.gpt at CRAN
Permanent link
Title: Regularized and Sparse Generalized Canonical Correlation
Analysis for Multiblock Data
Description: Multi-block data analysis concerns the analysis of several
sets of variables (blocks) observed on the same group of individuals.
The main aims of the RGCCA package are: to study the relationships
between blocks and to identify subsets of variables of each block
which are active in their relationships with the other blocks. This
package allows to (i) run R/SGCCA and related methods (\link{rgcca}),
(ii) help the user to find out the optimal parameters for R/SGCCA such
as regularization parameters (tau or sparsity)
(\link{rgcca_permutation}, \link{rgcca_cv}), (iii) evaluate the
stability of the RGCCA results and their significance
(\link{rgcca_bootstrap} and \link{rgcca_stability}), (iv) build predictive
models from the R/SGCCA (\link{rgcca_predict}), (v) Generic print()
and plot() functions apply to all these functionalities.
Author: Fabien Girka [aut],
Etienne Camenen [aut],
Caroline Peltier [aut],
Arnaud Gloaguen [aut],
Vincent Guillemot [aut],
Laurent Le Brusquet [ths],
Arthur Tenenhaus [aut, ths, cre]
Maintainer: Arthur Tenenhaus <arthur.tenenhaus@centralesupelec.fr>
Diff between RGCCA versions 2.1.2 dated 2017-05-11 and 3.0.0 dated 2023-04-27
RGCCA-2.1.2/RGCCA/R/BinarySearch.R |only RGCCA-2.1.2/RGCCA/R/defl.select.R |only RGCCA-2.1.2/RGCCA/R/miscrossprod.R |only RGCCA-2.1.2/RGCCA/R/norm2.R |only RGCCA-2.1.2/RGCCA/R/soft.threshold.R |only RGCCA-2.1.2/RGCCA/inst/doc/biblio.bib |only RGCCA-2.1.2/RGCCA/inst/doc/vignette_RGCCA.R |only RGCCA-2.1.2/RGCCA/inst/doc/vignette_RGCCA.Rmd |only RGCCA-2.1.2/RGCCA/inst/doc/vignette_RGCCA.pdf |only RGCCA-2.1.2/RGCCA/man/BinarySearch.Rd |only RGCCA-2.1.2/RGCCA/man/cov2.Rd |only RGCCA-2.1.2/RGCCA/man/defl.select.Rd |only RGCCA-2.1.2/RGCCA/man/miscrossprod.Rd |only RGCCA-2.1.2/RGCCA/man/rgccak.Rd |only RGCCA-2.1.2/RGCCA/man/scale2.Rd |only RGCCA-2.1.2/RGCCA/man/sgcca.Rd |only RGCCA-2.1.2/RGCCA/man/sgccak.Rd |only RGCCA-2.1.2/RGCCA/man/soft.Rd |only RGCCA-2.1.2/RGCCA/man/soft.threshold.Rd |only RGCCA-2.1.2/RGCCA/man/tau.estimate.Rd |only RGCCA-2.1.2/RGCCA/vignettes/Figures |only RGCCA-2.1.2/RGCCA/vignettes/vignette_RGCCA.Rmd |only RGCCA-2.1.2/RGCCA/vignettes/vignette_RGCCA.html |only RGCCA-3.0.0/RGCCA/DESCRIPTION | 59 + RGCCA-3.0.0/RGCCA/MD5 | 265 ++++++-- RGCCA-3.0.0/RGCCA/NAMESPACE | 78 +- RGCCA-3.0.0/RGCCA/NEWS.md |only RGCCA-3.0.0/RGCCA/R/ECSI.R |only RGCCA-3.0.0/RGCCA/R/Russett.R |only RGCCA-3.0.0/RGCCA/R/as_disjunctive.r |only RGCCA-3.0.0/RGCCA/R/ave.R |only RGCCA-3.0.0/RGCCA/R/check_blocks.r |only RGCCA-3.0.0/RGCCA/R/checks.R |only RGCCA-3.0.0/RGCCA/R/compute_astar.R |only RGCCA-3.0.0/RGCCA/R/connection_matrix.R |only RGCCA-3.0.0/RGCCA/R/cor2.R |only RGCCA-3.0.0/RGCCA/R/cov2.R | 53 - RGCCA-3.0.0/RGCCA/R/defl_select.R |only RGCCA-3.0.0/RGCCA/R/deflate.R |only RGCCA-3.0.0/RGCCA/R/deflation.R | 14 RGCCA-3.0.0/RGCCA/R/elongate_arg.R |only RGCCA-3.0.0/RGCCA/R/format_bootstrap_list.R |only RGCCA-3.0.0/RGCCA/R/format_combinations.R |only RGCCA-3.0.0/RGCCA/R/format_output.R |only RGCCA-3.0.0/RGCCA/R/generate_resampling.R |only RGCCA-3.0.0/RGCCA/R/get_available_metrics.R |only RGCCA-3.0.0/RGCCA/R/get_rgcca_args.R |only RGCCA-3.0.0/RGCCA/R/handle_NA.R |only RGCCA-3.0.0/RGCCA/R/initsvd.R | 37 - RGCCA-3.0.0/RGCCA/R/intersection.R |only RGCCA-3.0.0/RGCCA/R/methods.R |only RGCCA-3.0.0/RGCCA/R/par_pblapply.R |only RGCCA-3.0.0/RGCCA/R/plot.bootstrap.r |only RGCCA-3.0.0/RGCCA/R/plot.cval.R |only RGCCA-3.0.0/RGCCA/R/plot.permutation.R |only RGCCA-3.0.0/RGCCA/R/plot.rgcca.R |only RGCCA-3.0.0/RGCCA/R/plot.stability.R |only RGCCA-3.0.0/RGCCA/R/plot_ave.R |only RGCCA-3.0.0/RGCCA/R/plot_biplot.R |only RGCCA-3.0.0/RGCCA/R/plot_both.R |only RGCCA-3.0.0/RGCCA/R/plot_cor_circle.R |only RGCCA-3.0.0/RGCCA/R/plot_loadings.R |only RGCCA-3.0.0/RGCCA/R/plot_sample.R |only RGCCA-3.0.0/RGCCA/R/pm.R |only RGCCA-3.0.0/RGCCA/R/print.bootstrap.r |only RGCCA-3.0.0/RGCCA/R/print.cval.r |only RGCCA-3.0.0/RGCCA/R/print.permutation.R |only RGCCA-3.0.0/RGCCA/R/print.rgcca.R |only RGCCA-3.0.0/RGCCA/R/print.stability.R |only RGCCA-3.0.0/RGCCA/R/print_call.R |only RGCCA-3.0.0/RGCCA/R/print_comp.R |only RGCCA-3.0.0/RGCCA/R/proj_l1_l2.R |only RGCCA-3.0.0/RGCCA/R/remove_null_sd.R |only RGCCA-3.0.0/RGCCA/R/rgcca.R | 794 ++++++++++++++---------- RGCCA-3.0.0/RGCCA/R/rgcca_bootstrap.R |only RGCCA-3.0.0/RGCCA/R/rgcca_bootstrap_k.R |only RGCCA-3.0.0/RGCCA/R/rgcca_bootstrap_stats.R |only RGCCA-3.0.0/RGCCA/R/rgcca_cv.r |only RGCCA-3.0.0/RGCCA/R/rgcca_cv_k.R |only RGCCA-3.0.0/RGCCA/R/rgcca_init.R |only RGCCA-3.0.0/RGCCA/R/rgcca_permutation.R |only RGCCA-3.0.0/RGCCA/R/rgcca_permutation_k.R |only RGCCA-3.0.0/RGCCA/R/rgcca_postprocess.R |only RGCCA-3.0.0/RGCCA/R/rgcca_predict.R |only RGCCA-3.0.0/RGCCA/R/rgcca_stability.R |only RGCCA-3.0.0/RGCCA/R/rgcca_transform.R |only RGCCA-3.0.0/RGCCA/R/rgcca_update.R |only RGCCA-3.0.0/RGCCA/R/rgccad.R |only RGCCA-3.0.0/RGCCA/R/rgccak.R | 411 ++++-------- RGCCA-3.0.0/RGCCA/R/scale2.R | 41 - RGCCA-3.0.0/RGCCA/R/scale_inertia.R |only RGCCA-3.0.0/RGCCA/R/scale_lambda1.R |only RGCCA-3.0.0/RGCCA/R/scaling.R |only RGCCA-3.0.0/RGCCA/R/select_analysis.R |only RGCCA-3.0.0/RGCCA/R/set_parameter_grid.R |only RGCCA-3.0.0/RGCCA/R/sgcca.R | 515 ++++++--------- RGCCA-3.0.0/RGCCA/R/sgcca_init.R |only RGCCA-3.0.0/RGCCA/R/sgcca_postprocess.R |only RGCCA-3.0.0/RGCCA/R/sgcca_update.R |only RGCCA-3.0.0/RGCCA/R/sgccak.R | 233 +++---- RGCCA-3.0.0/RGCCA/R/shave.R |only RGCCA-3.0.0/RGCCA/R/soft.R | 11 RGCCA-3.0.0/RGCCA/R/soft_threshold.R |only RGCCA-3.0.0/RGCCA/R/stop.R |only RGCCA-3.0.0/RGCCA/R/subset_rows.R |only RGCCA-3.0.0/RGCCA/R/tau.estimate.R | 59 - RGCCA-3.0.0/RGCCA/R/theme_perso.R |only RGCCA-3.0.0/RGCCA/README.md |only RGCCA-3.0.0/RGCCA/build/vignette.rds |binary RGCCA-3.0.0/RGCCA/data/ECSI.rda |only RGCCA-3.0.0/RGCCA/data/Russett.rda |binary RGCCA-3.0.0/RGCCA/data/datalist | 1 RGCCA-3.0.0/RGCCA/inst/CITATION |only RGCCA-3.0.0/RGCCA/inst/doc/RGCCA.R |only RGCCA-3.0.0/RGCCA/inst/doc/RGCCA.Rmd |only RGCCA-3.0.0/RGCCA/inst/doc/RGCCA.pdf |only RGCCA-3.0.0/RGCCA/man/ECSI.Rd |only RGCCA-3.0.0/RGCCA/man/Russett.Rd | 105 +-- RGCCA-3.0.0/RGCCA/man/available_methods.Rd |only RGCCA-3.0.0/RGCCA/man/plot.bootstrap.Rd |only RGCCA-3.0.0/RGCCA/man/plot.cval.Rd |only RGCCA-3.0.0/RGCCA/man/plot.permutation.Rd |only RGCCA-3.0.0/RGCCA/man/plot.rgcca.Rd |only RGCCA-3.0.0/RGCCA/man/plot.stability.Rd |only RGCCA-3.0.0/RGCCA/man/print.bootstrap.Rd |only RGCCA-3.0.0/RGCCA/man/print.cval.Rd |only RGCCA-3.0.0/RGCCA/man/print.permutation.Rd |only RGCCA-3.0.0/RGCCA/man/print.rgcca.Rd |only RGCCA-3.0.0/RGCCA/man/print.stability.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca.Rd | 670 +++++++++++++++----- RGCCA-3.0.0/RGCCA/man/rgcca_bootstrap.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca_cv.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca_permutation.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca_predict.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca_stability.Rd |only RGCCA-3.0.0/RGCCA/man/rgcca_transform.Rd |only RGCCA-3.0.0/RGCCA/tests |only RGCCA-3.0.0/RGCCA/vignettes/RGCCA.Rmd |only RGCCA-3.0.0/RGCCA/vignettes/RGCCA_cache |only RGCCA-3.0.0/RGCCA/vignettes/biblio.bib | 176 ++++- RGCCA-3.0.0/RGCCA/vignettes/jsslogo.jpg |only RGCCA-3.0.0/RGCCA/vignettes/orcidlink.dtx |only RGCCA-3.0.0/RGCCA/vignettes/orcidlink.sty |only 143 files changed, 2132 insertions(+), 1390 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in parallel,
so metadata resolution and package downloads are fast. Metadata and package
files are cached on the local disk as well. 'pak' has a dependency solver,
so it finds version conflicts before performing the installation. This
version of 'pak' supports CRAN, 'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.5.0 dated 2023-04-20 and 0.5.1 dated 2023-04-27
DESCRIPTION | 6 +++--- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 9 insertions(+), 5 deletions(-)
Title: Joint Analysis and Imputation of Incomplete Data
Description: Joint analysis and imputation of incomplete data in the Bayesian
framework, using (generalized) linear (mixed) models and extensions there of,
survival models, or joint models for longitudinal and survival data, as
described in Erler, Rizopoulos and Lesaffre (2021) <doi:10.18637/jss.v100.i20>.
Incomplete covariates, if present, are automatically imputed.
The package performs some preprocessing of the data and creates a 'JAGS'
model, which will then automatically be passed to 'JAGS'
<https://mcmc-jags.sourceforge.io/> with the help of
the package 'rjags'.
Author: Nicole S. Erler [aut, cre]
Maintainer: Nicole S. Erler <n.erler@erasmusmc.nl>
Diff between JointAI versions 1.0.4 dated 2022-09-03 and 1.0.5 dated 2023-04-27
DESCRIPTION | 8 MD5 | 45 - NAMESPACE | 1 NEWS.md | 1036 +++++++++++++-------------- R/JointAI.R | 14 R/helpfunctions_checks.R | 2 R/plot_imp_distr.R | 288 +++---- R/plots.R | 2 R/predict.R | 6 R/scaling.R | 2 README.md | 2 build/JointAI.pdf |binary build/stage23.rdb |only inst/doc/AfterFitting.html | 111 +- inst/doc/MCMCsettings.html | 100 +- inst/doc/ModelSpecification.html | 6 inst/doc/SelectingParameters.html | 111 +- man/bs.Rd | 8 man/densplot.Rd | 2 man/figures/README-unnamed-chunk-4-1.png |binary man/predDF.Rd | 6 tests/testthat/test-clmm.R | 1 tests/testthat/test-glmm.R | 2 tests/testthat/test-helpfunctions_formulas.R | 516 ++++++------- 24 files changed, 1149 insertions(+), 1120 deletions(-)
Title: Fast and Versatile Argument Checks
Description: Tests and assertions to perform frequent argument checks. A
substantial part of the package was written in C to minimize any worries
about execution time overhead.
Author: Michel Lang [cre, aut] ,
Bernd Bischl [ctb],
Denes Toth [ctb]
Maintainer: Michel Lang <michellang@gmail.com>
Diff between checkmate versions 2.1.0 dated 2022-04-21 and 2.2.0 dated 2023-04-27
checkmate-2.1.0/checkmate/src/Makevars |only checkmate-2.2.0/checkmate/DESCRIPTION | 20 checkmate-2.2.0/checkmate/LICENSE | 2 checkmate-2.2.0/checkmate/MD5 | 58 - checkmate-2.2.0/checkmate/NAMESPACE | 7 checkmate-2.2.0/checkmate/NEWS.md | 6 checkmate-2.2.0/checkmate/R/checkCharacter.R | 3 checkmate-2.2.0/checkmate/R/checkPermutation.R |only checkmate-2.2.0/checkmate/R/checkString.R | 1 checkmate-2.2.0/checkmate/R/zzz.R | 1 checkmate-2.2.0/checkmate/build/vignette.rds |binary checkmate-2.2.0/checkmate/inst/doc/checkmate.html | 515 +++++----- checkmate-2.2.0/checkmate/inst/doc/tinytest.html | 134 +- checkmate-2.2.0/checkmate/man/checkCharacter.Rd | 4 checkmate-2.2.0/checkmate/man/checkChoice.Rd | 1 checkmate-2.2.0/checkmate/man/checkComplex.Rd | 2 checkmate-2.2.0/checkmate/man/checkDisjunct.Rd | 1 checkmate-2.2.0/checkmate/man/checkDouble.Rd | 2 checkmate-2.2.0/checkmate/man/checkInteger.Rd | 2 checkmate-2.2.0/checkmate/man/checkIntegerish.Rd | 2 checkmate-2.2.0/checkmate/man/checkLogical.Rd | 2 checkmate-2.2.0/checkmate/man/checkNumeric.Rd | 2 checkmate-2.2.0/checkmate/man/checkPermutation.Rd |only checkmate-2.2.0/checkmate/man/checkSetEqual.Rd | 1 checkmate-2.2.0/checkmate/man/checkString.Rd | 1 checkmate-2.2.0/checkmate/man/checkSubset.Rd | 1 checkmate-2.2.0/checkmate/man/checkmate-package.Rd | 1 checkmate-2.2.0/checkmate/src/checks.c | 15 checkmate-2.2.0/checkmate/tests/testthat/test_checkFunction.R | 8 checkmate-2.2.0/checkmate/tests/testthat/test_checkIntegerish.R | 4 checkmate-2.2.0/checkmate/tests/testthat/test_checkNumeric.R | 7 checkmate-2.2.0/checkmate/tests/testthat/test_checkPermutation.R |only 32 files changed, 427 insertions(+), 376 deletions(-)
Title: Tools for Simulation Studies in Parallel
Description: Tools for setting up ("design"), conducting, and evaluating
large-scale simulation studies with graphics and tables, including
parallel computations.
Author: Marius Hofert and Martin Maechler <maechler@stat.math.ethz.ch>
Maintainer: Marius Hofert <mhofert@hku.hk>
Diff between simsalapar versions 1.0-11 dated 2022-04-06 and 1.0-12 dated 2023-04-27
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/doApply.R | 10 +++++----- build/partial.rdb |binary 4 files changed, 13 insertions(+), 13 deletions(-)
Title: Fast Algorithms for Robust Slopes
Description: Fast algorithms for the Theil-Sen estimator,
Siegel's repeated median slope estimator, and Passing-Bablok regression.
The implementation is based on algorithms by
Dillencourt et. al (1992) <doi:10.1142/S0218195992000020> and Matousek et. al (1998) <doi:10.1007/PL00009190>.
The implementations are detailed in
Raymaekers (2023) <doi:10.32614/RJ-2023-012> and
Raymaekers J., Dufey F. (2022) <arXiv:2202.08060>.
All algorithms run in quasilinear time.
Author: Jakob Raymaekers
Maintainer: Jakob Raymaekers <j.raymaekers@maastrichtuniversity.nl>
Diff between robslopes versions 1.1.2 dated 2022-09-15 and 1.1.3 dated 2023-04-27
DESCRIPTION | 13 +++++++------ MD5 | 19 ++++++++++--------- inst |only man/RepeatedMedian.Rd | 2 ++ man/TheilSen.Rd | 2 ++ man/robslope.Rd | 2 ++ man/robslopefit.Rd | 2 ++ src/Makevars | 2 +- src/Makevars.win | 2 +- src/rcpparma_Theil_Sen.cpp | 2 +- src/rcpparma_repeated_median.cpp | 13 ++++++------- 11 files changed, 34 insertions(+), 25 deletions(-)
Title: 'NOAA' Weather Data from R
Description: Client for many 'NOAA' data sources including the 'NCDC' climate
'API' at <https://www.ncdc.noaa.gov/cdo-web/webservices/v2>, with functions for
each of the 'API' 'endpoints': data, data categories, data sets, data types,
locations, location categories, and stations. In addition, we have an interface
for 'NOAA' sea ice data, the 'NOAA' severe weather inventory, 'NOAA' Historical
Observing 'Metadata' Repository ('HOMR') data, 'NOAA' storm data via 'IBTrACS',
tornado data via the 'NOAA' storm prediction center, and more.
Author: Scott Chamberlain [aut] ,
Daniel Hocking [aut, cre] ,
Brooke Anderson [ctb],
Maelle Salmon [ctb],
Adam Erickson [ctb],
Nicholas Potter [ctb],
Joseph Stachelek [ctb],
Alex Simmons [ctb],
Karthik Ram [ctb],
Hart Edmund [ctb],
rOpenSci [fnd]
Maintainer: Daniel Hocking <djhocking@gmail.com>
Diff between rnoaa versions 1.3.8 dated 2021-12-01 and 1.4.0 dated 2023-04-27
rnoaa-1.3.8/rnoaa/R/argo.R |only rnoaa-1.3.8/rnoaa/man/argo.Rd |only rnoaa-1.3.8/rnoaa/man/autoplot.meteo_coverage.Rd |only rnoaa-1.4.0/rnoaa/.Rinstignore | 8 rnoaa-1.4.0/rnoaa/DESCRIPTION | 14 rnoaa-1.4.0/rnoaa/LICENSE | 4 rnoaa-1.4.0/rnoaa/MD5 | 428 rnoaa-1.4.0/rnoaa/NAMESPACE | 306 rnoaa-1.4.0/rnoaa/NEWS.md | 1354 - rnoaa-1.4.0/rnoaa/R/arc2.R | 268 rnoaa-1.4.0/rnoaa/R/bsw.R | 368 rnoaa-1.4.0/rnoaa/R/buoy.R | 586 rnoaa-1.4.0/rnoaa/R/coops.R | 436 rnoaa-1.4.0/rnoaa/R/cpc.R | 332 rnoaa-1.4.0/rnoaa/R/defunct.R | 216 rnoaa-1.4.0/rnoaa/R/ersst.R | 188 rnoaa-1.4.0/rnoaa/R/ghcnd.R | 506 rnoaa-1.4.0/rnoaa/R/ghcnd_search.R | 214 rnoaa-1.4.0/rnoaa/R/ghcnd_states.R | 90 rnoaa-1.4.0/rnoaa/R/ghcnd_stations.R | 232 rnoaa-1.4.0/rnoaa/R/globals.R | 61 rnoaa-1.4.0/rnoaa/R/helpers_ghcnd.R | 434 rnoaa-1.4.0/rnoaa/R/homr.R | 386 rnoaa-1.4.0/rnoaa/R/homr_definitions.R | 42 rnoaa-1.4.0/rnoaa/R/isd.R | 392 rnoaa-1.4.0/rnoaa/R/isd_read.R | 70 rnoaa-1.4.0/rnoaa/R/isd_stations.R | 124 rnoaa-1.4.0/rnoaa/R/isd_stations_search.R | 158 rnoaa-1.4.0/rnoaa/R/lcd.R | 790 rnoaa-1.4.0/rnoaa/R/meteo-autoplot.R | 197 rnoaa-1.4.0/rnoaa/R/meteo_cache.r | 44 rnoaa-1.4.0/rnoaa/R/meteo_distance.R | 590 rnoaa-1.4.0/rnoaa/R/meteo_utils.r | 228 rnoaa-1.4.0/rnoaa/R/ncdc.r | 614 rnoaa-1.4.0/rnoaa/R/ncdc_add_units.R | 40 rnoaa-1.4.0/rnoaa/R/ncdc_combine.r | 146 rnoaa-1.4.0/rnoaa/R/ncdc_datacats.r | 178 rnoaa-1.4.0/rnoaa/R/ncdc_datasets.r | 166 rnoaa-1.4.0/rnoaa/R/ncdc_datatypes.r | 194 rnoaa-1.4.0/rnoaa/R/ncdc_locs.r | 164 rnoaa-1.4.0/rnoaa/R/ncdc_locs_cats.r | 138 rnoaa-1.4.0/rnoaa/R/ncdc_plot.r | 170 rnoaa-1.4.0/rnoaa/R/ncdc_stations.r | 274 rnoaa-1.4.0/rnoaa/R/onattach.R | 11 rnoaa-1.4.0/rnoaa/R/onload.R | 94 rnoaa-1.4.0/rnoaa/R/rnoaa-package.r | 280 rnoaa-1.4.0/rnoaa/R/rnoaa_caching.R | 200 rnoaa-1.4.0/rnoaa/R/rnoaa_options.R | 98 rnoaa-1.4.0/rnoaa/R/seaice.r | 456 rnoaa-1.4.0/rnoaa/R/seaice_tabular.R | 86 rnoaa-1.4.0/rnoaa/R/storm_events.R | 302 rnoaa-1.4.0/rnoaa/R/storm_shp.R | 18 rnoaa-1.4.0/rnoaa/R/storms.R | 12 rnoaa-1.4.0/rnoaa/R/storms_meta.R | 8 rnoaa-1.4.0/rnoaa/R/swdi.r | 400 rnoaa-1.4.0/rnoaa/R/tornadoes.R | 112 rnoaa-1.4.0/rnoaa/R/units-annual.R | 52 rnoaa-1.4.0/rnoaa/R/units-ghcnd.R | 242 rnoaa-1.4.0/rnoaa/R/units-gsom.R | 180 rnoaa-1.4.0/rnoaa/R/units-gsoy.R | 200 rnoaa-1.4.0/rnoaa/R/units-normal_ann.R | 956 - 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Title: Interface to 'JDemetra+' Seasonal Adjustment Software
Description: Interface around 'JDemetra+' (<https://github.com/jdemetra/jdemetra-app>), the seasonal adjustment software officially
recommended to the members of the European Statistical System (ESS) and the European System of Central Banks.
It offers full access to all options and outputs of 'JDemetra+', including the two leading seasonal adjustment methods
TRAMO/SEATS+ and X-12ARIMA/X-13ARIMA-SEATS.
Author: Alain Quartier-la-Tente [aut, cre]
,
Anna Michalek [aut],
Jean Palate [aut],
Raf Baeyens [aut]
Maintainer: Alain Quartier-la-Tente <alain.quartier@yahoo.fr>
Diff between RJDemetra versions 0.2.1 dated 2022-11-11 and 0.2.2 dated 2023-04-27
DESCRIPTION | 10 ++-- MD5 | 74 +++++++++++++++++----------------- NEWS.md | 12 ++++- R/export_workspace.R | 2 R/import_workspace.R | 16 +++---- R/ipi_c_eu.R | 8 +-- R/regarima.R | 13 ++--- R/regarima_specTS.R | 26 +++++++---- R/regarima_specX13.R | 32 +++++++------- R/sa_plot.R | 4 - R/sa_print.R | 2 R/saveSpec.R | 4 - R/spec.R | 4 - R/tramoseats.R | 29 ++++++------- R/tramoseats_spec.R | 28 +++++------- R/user_defined.R | 23 ++++++++-- R/x13.R | 28 ++++-------- R/x13_spec.R | 24 +++++------ README.md | 15 +----- man/add_sa_item.Rd | 2 man/compute.Rd | 4 - man/figures/README-plot-example-1.png |binary man/figures/README-plot-example-2.png |binary man/get_model.Rd | 2 man/get_object.Rd | 8 +-- man/ipi_c_eu.Rd | 8 +-- man/load_workspace.Rd | 2 man/plot.Rd | 4 - man/regarima.Rd | 13 ++--- man/regarima_spec_tramoseats.Rd | 25 ++++++----- man/regarima_spec_x13.Rd | 32 +++++++------- man/save_spec.Rd | 4 - man/specification.Rd | 4 - man/tramoseats.Rd | 26 +++++------ man/tramoseats_spec.Rd | 42 ++++++++++--------- man/user_defined_variables.Rd | 24 +++++++++-- man/x13.Rd | 25 ++++------- man/x13_spec.Rd | 40 +++++++++--------- 38 files changed, 324 insertions(+), 295 deletions(-)
Title: Textual Statistics for the Quantitative Analysis of Textual Data
Description: Textual statistics functions formerly in the 'quanteda' package.
Textual statistics for characterizing and comparing textual data. Includes
functions for measuring term and document frequency, the co-occurrence of
words, similarity and distance between features and documents, feature entropy,
keyword occurrence, readability, and lexical diversity. These functions
extend the 'quanteda' package and are specially designed for sparse textual data.
Author: Kenneth Benoit [cre, aut, cph]
,
Kohei Watanabe [aut] ,
Haiyan Wang [aut] ,
Jiong Wei Lua [aut],
Jouni Kuha [aut] ,
European Research Council [fnd]
Maintainer: Kenneth Benoit <kbenoit@lse.ac.uk>
Diff between quanteda.textstats versions 0.96.1 dated 2023-03-08 and 0.96.2 dated 2023-04-27
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 1 + README.md | 9 ++++----- build/partial.rdb |binary inst/WORDLIST | 2 ++ src/utility.cpp | 2 ++ 7 files changed, 19 insertions(+), 15 deletions(-)
More information about quanteda.textstats at CRAN
Permanent link
Title: Quantile Regression Neural Network
Description: Fit quantile regression neural network models with optional
left censoring, partial monotonicity constraints, generalized additive
model constraints, and the ability to fit multiple non-crossing quantile
functions following Cannon (2011) <doi:10.1016/j.cageo.2010.07.005>
and Cannon (2018) <doi:10.1007/s00477-018-1573-6>.
Author: Alex J. Cannon [aut, cre]
Maintainer: Alex J. Cannon <alex.cannon@canada.ca>
Diff between qrnn versions 2.0.5 dated 2019-09-13 and 2.1 dated 2023-04-27
DESCRIPTION | 7 ++++--- MD5 | 26 ++++++++++++++------------ NAMESPACE | 8 ++++++++ R/mcqrnn.R | 39 ++++++++++++++++++++++++++++++--------- R/qquantile.nw.R |only R/qrnn.R | 28 ++++++++++++++++------------ R/qrnn2.R | 35 ++++++++++++++++++++--------------- R/transfer.R | 29 +++++++++++++++++++++++++---- README.md |only inst/CITATION | 36 +++++++++++++++++------------------- man/YVRprecip.Rd | 2 +- man/dummy.code.Rd | 50 +++++++++++++++++++++++++------------------------- man/mcqrnn.Rd | 13 +++++++++---- man/quantile.dtn.Rd | 14 ++++++++++++-- man/transfer.Rd | 20 +++++++++++++++++--- 15 files changed, 198 insertions(+), 109 deletions(-)
Title: Pseudo-Realizations for Gaussian Process Excursions
Description: Computes pseudo-realizations from the posterior distribution of a Gaussian Process (GP) with the method described in Azzimonti et al. (2016) <doi:10.1137/141000749>. The realizations are obtained from simulations of the field at few well chosen points that minimize the expected distance in measure between the true excursion set of the field and the approximate one. Also implements a R interface for (the main function of) Distance Transform of sampled Functions (<https://cs.brown.edu/people/pfelzens/dt/index.html>).
Author: Dario Azzimonti [aut, cre, cph]
,
Julien Bect [ctb],
Pedro Felzenszwalb [ctb, cph]
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between pGPx versions 0.1.2 dated 2022-09-08 and 0.1.3 dated 2023-04-27
DESCRIPTION | 18 ++++++++--------- MD5 | 10 ++++----- NEWS.md | 5 +++- README.md | 56 ++++++++++++++++++++++++++++++------------------------- src/Makevars | 1 src/Makevars.win | 1 6 files changed, 49 insertions(+), 42 deletions(-)
Title: Data Package for 'pathfindR'
Description: This is a data-only package, containing data needed to run the CRAN
package 'pathfindR', a package for enrichment analysis utilizing active
subnetworks. This package contains protein-protein interaction network data,
data related to gene sets and example input/output data.
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR.data versions 1.1.3 dated 2022-12-11 and 2.0.0 dated 2023-04-27
pathfindR.data-1.1.3/pathfindR.data/data/RA_clustered.rda |only pathfindR.data-1.1.3/pathfindR.data/data/RA_comparison_output.rda |only pathfindR.data-1.1.3/pathfindR.data/data/RA_exp_mat.rda |only pathfindR.data-1.1.3/pathfindR.data/data/RA_input.rda |only pathfindR.data-1.1.3/pathfindR.data/data/RA_output.rda |only pathfindR.data-1.1.3/pathfindR.data/data/custom_result.rda |only pathfindR.data-1.1.3/pathfindR.data/data/myeloma_input.rda |only pathfindR.data-1.1.3/pathfindR.data/data/myeloma_output.rda |only pathfindR.data-1.1.3/pathfindR.data/man/RA_clustered.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/RA_comparison_output.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/RA_exp_mat.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/RA_input.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/RA_output.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/custom_result.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/myeloma_input.Rd |only pathfindR.data-1.1.3/pathfindR.data/man/myeloma_output.Rd |only pathfindR.data-2.0.0/pathfindR.data/DESCRIPTION | 8 - pathfindR.data-2.0.0/pathfindR.data/MD5 | 40 ++--- pathfindR.data-2.0.0/pathfindR.data/NEWS.md | 5 pathfindR.data-2.0.0/pathfindR.data/R/data.R | 68 +++++----- pathfindR.data-2.0.0/pathfindR.data/data/example_comparison_output.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_custom_genesets_result.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_experiment_matrix.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_mmu_input.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_mmu_output.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_pathfindR_input.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_pathfindR_output.rda |only pathfindR.data-2.0.0/pathfindR.data/data/example_pathfindR_output_clustered.rda |only pathfindR.data-2.0.0/pathfindR.data/data/pathfindR.data_updates.rda |binary pathfindR.data-2.0.0/pathfindR.data/man/example_comparison_output.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_custom_genesets_result.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_experiment_matrix.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_mmu_input.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_mmu_output.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_pathfindR_input.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_pathfindR_output.Rd |only pathfindR.data-2.0.0/pathfindR.data/man/example_pathfindR_output_clustered.Rd |only 37 files changed, 63 insertions(+), 58 deletions(-)
More information about pathfindR.data at CRAN
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Title: Neyman-Pearson Classification via Cost-Sensitive Learning
Description: We connect the multi-class Neyman-Pearson classification (NP) problem to the cost-sensitive learning (CS) problem, and propose two algorithms (NPMC-CX and NPMC-ER) to solve the multi-class NP problem through cost-sensitive learning tools. Under certain conditions, the two algorithms are shown to satisfy multi-class NP properties. More details are available in the paper "Neyman-Pearson Multi-class Classification via Cost-sensitive Learning" (Ye Tian and Yang Feng, 2021).
Author: Ye Tian [aut],
Ching-Tsung Tsai [aut, cre],
Yang Feng [aut]
Maintainer: Ching-Tsung Tsai <tctsung@nyu.edu>
Diff between npcs versions 0.1.0 dated 2021-10-19 and 0.1.1 dated 2023-04-27
DESCRIPTION | 23 ++-- MD5 | 41 ++++---- NAMESPACE | 31 ++++-- R/cv.npcs.R |only R/error_rate.R | 24 ---- R/funcs.R | 100 ++++++++++++++++++++ R/gamma_smote.R | 8 - R/generate_data.R | 108 +++++++++++----------- R/npcs.R | 226 ++++++++--------------------------------------- R/predict.npcs.R | 46 +-------- R/print.cv.npcs.R |only build/vignette.rds |binary inst/doc/npcs-demo.R | 50 +++++++--- inst/doc/npcs-demo.Rmd | 76 +++++++++++---- inst/doc/npcs-demo.pdf |binary man/cv.npcs.Rd |only man/error_rate.Rd | 24 ---- man/gamma_smote.Rd | 8 - man/npcs.Rd | 50 ++++------ man/predict.npcs.Rd | 15 --- man/print.cv.npcs.Rd |only vignettes/npcs-demo.Rmd | 76 +++++++++++---- vignettes/npcs-demo.html |only vignettes/reference.bib | 10 ++ 24 files changed, 454 insertions(+), 462 deletions(-)
Title: ICA-Based Matrix/Tensor Decomposition
Description: Some functions for performing ICA, MICA, Group ICA, and Multilinear ICA are implemented.
ICA, MICA/Group ICA, and Multilinear ICA extract statistically independent components from single matrix, multiple matrices, and single tensor, respectively.
For the details of these methods, see the reference section of GitHub README.md <https://github.com/rikenbit/iTensor>.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between iTensor versions 0.99.0 dated 2022-06-14 and 1.0.0 dated 2023-04-27
iTensor-0.99.0/iTensor/README.md |only iTensor-1.0.0/iTensor/DESCRIPTION | 20 ++++---- iTensor-1.0.0/iTensor/LICENSE | 4 - iTensor-1.0.0/iTensor/MD5 | 47 ++++++++++++++----- iTensor-1.0.0/iTensor/NAMESPACE | 21 ++++++++ iTensor-1.0.0/iTensor/R/CorrIndex.R |only iTensor-1.0.0/iTensor/R/GroupICA.R |only iTensor-1.0.0/iTensor/R/ICA.R | 7 +- iTensor-1.0.0/iTensor/R/ICA2.R |only iTensor-1.0.0/iTensor/R/MICA.R | 1 iTensor-1.0.0/iTensor/R/MultilinearICA.R | 13 ++++- iTensor-1.0.0/iTensor/R/toyModel.R |only iTensor-1.0.0/iTensor/build |only iTensor-1.0.0/iTensor/inst/NEWS | 10 ++++ iTensor-1.0.0/iTensor/inst/doc |only iTensor-1.0.0/iTensor/man/CorrIndex.Rd |only iTensor-1.0.0/iTensor/man/GroupICA.Rd |only iTensor-1.0.0/iTensor/man/ICA.Rd | 6 -- iTensor-1.0.0/iTensor/man/ICA2.Rd |only iTensor-1.0.0/iTensor/man/MICA.Rd | 7 -- iTensor-1.0.0/iTensor/man/MultilinearICA.Rd | 10 +--- iTensor-1.0.0/iTensor/man/toyModel.Rd |only iTensor-1.0.0/iTensor/tests/testthat/test-GroupICA.R |only iTensor-1.0.0/iTensor/tests/testthat/test-ICA.R | 3 - iTensor-1.0.0/iTensor/tests/testthat/test-ICA2.R |only iTensor-1.0.0/iTensor/vignettes |only 26 files changed, 101 insertions(+), 48 deletions(-)
Title: Genetic Epidemiology Design and Inference
Description: Package for Genetic Epidemiologic Methods Developed at MSKCC. It contains functions to calculate haplotype specific odds ratio and the power of two stage design for GWAS studies.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan <seshanv@mskcc.org>
Diff between genepi versions 1.0.1 dated 2010-10-01 and 1.0.2 dated 2023-04-27
DESCRIPTION | 9 +++++---- MD5 |only R/haplotypeOddsRatio.R | 2 +- R/twoStagePower.R | 3 ++- inst/CHANGES | 7 +++++++ src/init.c |only 6 files changed, 15 insertions(+), 6 deletions(-)
Title: Fishery Science Methods and Models
Description: Functions for applying a wide range of fisheries stock assessment methods.
Author: Gary A. Nelson <gary.nelson@mass.gov>
Maintainer: Gary A. Nelson <gary.nelson@mass.gov>
Diff between fishmethods versions 1.12-0 dated 2023-01-25 and 1.12-1 dated 2023-04-27
DESCRIPTION | 10 +++++----- MD5 | 19 +++++++++++++++---- NAMESPACE | 2 +- R/compare.lrt.plus.R |only R/growth_sel.R |only R/growthlrt.plus.R |only data/AtkaMack.rda |only data/simulus.rda |only man/AtkaMack.Rd |only man/compare.lrt.plus.Rd |only man/ep_growth.Rd | 7 ++++++- man/growth_sel.Rd |only man/growthlrt.plus.Rd |only man/simulus.rd |only src/TMB/fishmethods_TMBExports.cpp | 5 +++++ src/TMB/grow_sel.hpp |only 16 files changed, 32 insertions(+), 11 deletions(-)
Title: Exploratory and Descriptive Event-Based Data Analysis
Description: Exploratory and descriptive analysis of event based data. Provides methods for describing and selecting process data, and for preparing event log data for process mining. Builds on the S3-class for event logs implemented in the package 'bupaR'.
Author: Gert Janssenswillen [aut, cre],
Gerard van Hulzen [ctb],
Marijke Swennen [ctb],
Ivan Esin [ctb],
Hasselt University [cph]
Maintainer: Gert Janssenswillen <gert.janssenswillen@uhasselt.be>
Diff between edeaR versions 0.9.3 dated 2023-02-16 and 0.9.4 dated 2023-04-27
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 6 ++++++ R/filter_infrequent_flows.R | 3 ++- R/rework_base.R | 1 + README.md | 5 +++-- inst/doc/filters.html | 6 +++--- inst/doc/metrics.html | 4 ++-- inst/doc/queue.html | 4 ++-- inst/doc/work_schedules.html | 4 ++-- 10 files changed, 33 insertions(+), 24 deletions(-)
Title: Access and Analyze eBird Status and Trends Data
Description: Tools to download, load, plot, and analyze eBird Status and
Trends Data Products
(<https://science.ebird.org/en/status-and-trends>). eBird
(<https://ebird.org/home>) is a global database of bird observations
collected by member of the public. eBird Status and Trends uses these
data to model global bird abundances, range boundaries, and habitat
associations at a high spatial and temporal resolution.
Author: Matthew Strimas-Mackey [aut, cre]
,
Shawn Ligocki [aut],
Tom Auer [aut] ,
Daniel Fink [aut] ,
Cornell Lab of Ornithology [cph]
Maintainer: Matthew Strimas-Mackey <mes335@cornell.edu>
Diff between ebirdst versions 2.2021.1 dated 2023-04-06 and 2.2021.2 dated 2023-04-27
ebirdst-2.2021.1/ebirdst/man/ebirdst_sample.Rd |only ebirdst-2.2021.2/ebirdst/DESCRIPTION | 8 ebirdst-2.2021.2/ebirdst/MD5 | 23 ebirdst-2.2021.2/ebirdst/NAMESPACE | 9 ebirdst-2.2021.2/ebirdst/NEWS.md | 4 ebirdst-2.2021.2/ebirdst/R/ebirdst-ppms.R | 15 ebirdst-2.2021.2/ebirdst/R/sample.R | 785 ++++++++-- ebirdst-2.2021.2/ebirdst/R/utils.R | 10 ebirdst-2.2021.2/ebirdst/build/vignette.rds |binary ebirdst-2.2021.2/ebirdst/inst/doc/ebirdst.html | 4 ebirdst-2.2021.2/ebirdst/inst/doc/rasters.html | 4 ebirdst-2.2021.2/ebirdst/man/assign_to_grid.Rd |only ebirdst-2.2021.2/ebirdst/man/figures/README-quick_start-1.png |binary ebirdst-2.2021.2/ebirdst/man/grid_sample.Rd |only 14 files changed, 674 insertions(+), 188 deletions(-)
Title: Setting the Critical Path
Description: Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation and Review Technique) and LESS (Least Cost Estimating and Scheduling) methods. The package sets the critical path, schedule and Gantt chart. In addition, it allows to draw a graph even with marked critical activities. For more information about project management see: Taha H. A. "Operations Research. An Introduction" (2017, ISBN:978-1-292-16554-7), Rama Murthy P. "Operations Research" (2007, ISBN:978-81-224-2944-2), Yuval Cohen & Arik Sadeh (2006) "A New Approach for Constructing and Generating AOA Networks", Journal of Engineering, Computing and Architecture 1. 1-13, Konarzewska I., Jewczak M., Kucharski A. (2020, ISBN:978-83-8220-112-3), Miszczyńska D., Miszczyński M. "Wybrane metody badań operacyjnych" (2000, ISBN:83-907712-0-9).
Author: Adam Kucharski
Maintainer: Adam Kucharski <aqcharski@interia.pl>
Diff between critpath versions 0.1.5 dated 2023-02-23 and 0.2.0 dated 2023-04-27
DESCRIPTION | 16 - MD5 | 65 ++++-- NAMESPACE | 2 NEWS | 7 R/cpmexample1.R | 3 R/cpmexample2.R |only R/criticalpath_methodsAOE.R | 415 +++++++++++++++++++++++++++++++++++++++----- R/lessAOA.R | 71 ++++++- R/lessexample1.R | 1 R/lessexample2.R |only R/pertexample1.R | 3 R/pertexample2.R |only build/vignette.rds |binary data/cpmexample2.RData |only data/lessexample2.RData |only data/pertexample2.RData |only inst/doc/CPMandPERT.R | 20 +- inst/doc/CPMandPERT.Rmd | 137 +------------- inst/doc/CPMandPERT.html | 241 +++++-------------------- inst/doc/Introduction.R |only inst/doc/Introduction.Rmd |only inst/doc/Introduction.html |only inst/doc/LESS.R | 6 inst/doc/LESS.Rmd | 10 - inst/doc/LESS.html | 37 ++- man/cpmexample1.Rd | 3 man/cpmexample2.Rd |only man/lessexample1.Rd | 1 man/lessexample2.Rd |only man/pertexample1.Rd | 3 man/pertexample2.Rd |only man/plot_alap.Rd | 4 man/plot_asap.Rd | 4 man/plot_gantt.Rd | 4 man/plot_graphAOA.Rd | 4 man/solve_lessAOA.Rd | 20 +- man/solve_pathAOA.Rd | 29 ++- vignettes/CPMandPERT.Rmd | 137 +------------- vignettes/Introduction.Rmd |only vignettes/LESS.Rmd | 10 - 40 files changed, 690 insertions(+), 563 deletions(-)
Title: Centered Isotonic Regression and Dose-Response Utilities
Description: Isotonic regression (IR) and its improvement: centered isotonic regression (CIR). CIR is recommended in particular with small samples. Also, interval estimates for both, and additional utilities such as plotting dose-response data. For dev version and change history, see GitHub assaforon/cir.
Author: Assaf P. Oron [cre, aut]
Maintainer: Assaf P. Oron <assaf.oron@gmail.com>
Diff between cir versions 2.3.0 dated 2023-03-08 and 2.3.1 dated 2023-04-27
DESCRIPTION | 10 ++--- MD5 | 30 ++++++++--------- R/analIntervals.r | 21 +++++++---- R/utilities.r | 29 ++++++++-------- build/vignette.rds |binary inst/doc/BenHamou03.R | 1 inst/doc/BenHamou03.html | 74 ++++++++++++++++++++++-------------------- inst/doc/BenHamou03.rmd | 11 +++--- inst/examples/cirExamples.r | 6 +-- inst/examples/invCiExamples.r | 27 ++++++++++----- inst/examples/invExamples.r | 14 +++---- man/cirPAVA.Rd | 6 +-- man/deltaInverse.Rd | 31 +++++++++++------ man/quickInverse.Rd | 14 +++---- man/quickIsotone.Rd | 6 +-- vignettes/BenHamou03.rmd | 11 +++--- 16 files changed, 165 insertions(+), 126 deletions(-)
Title: Compute High Dimensional Orthant Probabilities
Description: Computationally efficient method to estimate orthant probabilities of high-dimensional Gaussian vectors. Further implements a function to compute conservative estimates of excursion sets under Gaussian random field priors.
Author: Dario Azzimonti [aut, cre, cph]
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between anMC versions 0.2.3 dated 2022-09-08 and 0.2.4 dated 2023-04-27
DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ NEWS.md | 7 ++++++- README.md | 45 +++++++++++++++++++++++++-------------------- build/partial.rdb |binary src/Makevars | 1 - src/Makevars.win | 1 - 7 files changed, 42 insertions(+), 34 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-14 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-12 1.1.2
2022-11-02 1.1.0
2022-09-15 1.0.9
2022-08-26 1.0.8
2022-07-07 1.0.7
2022-04-13 1.0.6
2022-03-10 1.0.5
2022-01-05 1.0.4
2021-11-08 1.0.3
2021-07-20 1.0.2
2021-01-06 1.0.1
2020-11-04 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-12 1.2.1