Title: Variable Table for Variable Documentation
Description: Automatically generates HTML variable documentation including variable names, labels, classes, value labels (if applicable), value ranges, and summary statistics. See the vignette "vtable" for a package overview.
Author: Nick Huntington-Klein [aut, cre]
Maintainer: Nick Huntington-Klein <nhuntington-klein@seattleu.edu>
Diff between vtable versions 1.4.3 dated 2023-03-27 and 1.4.4 dated 2023-04-28
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 5 +++++ R/helpers.R | 5 +++-- R/vtable.R | 5 +++-- inst/doc/dftotable.html | 4 ++-- inst/doc/labeltable.html | 4 ++-- inst/doc/sumtable.html | 4 ++-- inst/doc/vtable.html | 4 ++-- inst/doc/vtablefunction.html | 12 ++++++------ inst/doc/vtablehelpers.html | 8 ++++---- 11 files changed, 42 insertions(+), 35 deletions(-)
Title: Read and Write Rectangular Text Data Quickly
Description: The goal of 'vroom' is to read and write data (like 'csv',
'tsv' and 'fwf') quickly. When reading it uses a quick initial
indexing step, then reads the values lazily , so only the data you
actually use needs to be read. The writer formats the data in
parallel and writes to disk asynchronously from formatting.
Author: Jim Hester [aut] ,
Hadley Wickham [aut] ,
Jennifer Bryan [aut, cre] ,
Shelby Bearrows [ctb],
https://github.com/mandreyel/ [cph] ,
Jukka Jylaenki [cph] ,
Mikkel Joergensen [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Jennifer Bryan <jenny@posit.co>
Diff between vroom versions 1.6.1 dated 2023-01-22 and 1.6.3 dated 2023-04-28
DESCRIPTION | 19 ++++----- LICENSE | 2 MD5 | 61 +++++++++++++++--------------- NAMESPACE | 4 - NEWS.md | 6 ++ R/col_types.R | 26 +++++------- R/generator.R | 2 R/path.R | 8 +-- R/vroom-package.R | 10 ++++ R/vroom.R | 13 +----- R/vroom_fwf.R | 6 +- R/vroom_lines.R | 6 +- R/zzz.R | 5 -- README.md | 30 +++++++------- build/vroom.pdf |binary inst/doc/vroom.html | 32 +++++++-------- man/figures/lifecycle-archived.svg | 22 ++++++++++ man/figures/lifecycle-defunct.svg | 22 ++++++++++ man/figures/lifecycle-deprecated.svg | 22 ++++++++++ man/figures/lifecycle-experimental.svg | 22 ++++++++++ man/figures/lifecycle-maturing.svg | 22 ++++++++++ man/figures/lifecycle-questioning.svg | 22 ++++++++++ man/figures/lifecycle-soft-deprecated.svg | 22 ++++++++++ man/figures/lifecycle-stable.svg | 30 ++++++++++++++ man/figures/lifecycle-superseded.svg |only man/vroom-package.Rd | 8 +-- man/vroom_fwf.Rd | 6 +- src/grisu3.c | 19 ++++++++- src/vroom_write.cc | 2 tests/testthat/test-path.R | 6 +- tests/testthat/test-problems.R | 2 tests/testthat/test-vroom_write.R | 7 --- 32 files changed, 325 insertions(+), 139 deletions(-)
Title: Functions for Base Types and Core R and 'Tidyverse' Features
Description: A toolbox for working with base types, core R features
like the condition system, and core 'Tidyverse' features like tidy
evaluation.
Author: Lionel Henry [aut, cre],
Hadley Wickham [aut],
mikefc [cph] ,
Yann Collet [cph] ,
Posit, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between rlang versions 1.1.0 dated 2023-03-14 and 1.1.1 dated 2023-04-28
DESCRIPTION | 6 +-- MD5 | 41 +++++++++++++-------------- NEWS.md | 15 +++++++++ R/nse-inject.R | 12 ------- R/parse.R | 16 ++++++++-- R/standalone-obj-type.R | 12 ++++++- man/parse_expr.Rd | 4 ++ man/rmd/setup.Rmd | 2 + man/topic-condition-formatting.Rd | 6 +-- man/topic-data-mask-programming.Rd | 5 +-- man/topic-data-mask.Rd | 8 +++-- man/topic-error-chaining.Rd | 5 +-- man/topic-inject-out-of-context.Rd | 12 +++++-- man/topic-metaprogramming.Rd | 9 +++-- src/internal/dots.c | 2 - src/rlang/globals.c | 2 - src/version.c | 2 - tests/testthat/_snaps/nse-inject.md | 17 ----------- tests/testthat/_snaps/standalone-obj-type.md |only tests/testthat/test-dots-ellipsis.R | 7 +--- tests/testthat/test-nse-inject.R | 5 +-- tests/testthat/test-standalone-obj-type.R | 6 +++ 22 files changed, 109 insertions(+), 85 deletions(-)
Title: Sets of Numbers Implemented with Hash Tables
Description: Implementation of S4 class of sets and multisets of numbers.
The implementation is based on the hash table from the package 'hash'.
Quick operations are allowed when the set is a dynamic object.
The implementation is discussed in detail in Ceoldo and Wit (2023) <arXiv:2304.09809>.
Author: Giacomo Ceoldo [aut, cre, cph]
Maintainer: Giacomo Ceoldo <giacomo.ceoldo@usi.ch>
Diff between hset versions 0.1.0 dated 2023-04-23 and 0.1.1 dated 2023-04-28
DESCRIPTION | 6 ++-- MD5 | 10 +++--- NAMESPACE | 2 - man/inclusion.Rd | 7 ++-- man/operations.Rd | 79 +++++++++++++++++++++++++++--------------------------- man/subset.Rd | 48 +++++++++++++++++--------------- 6 files changed, 78 insertions(+), 74 deletions(-)
Title: Design and Analysis of Experiments with R
Description: Contains Data frames and functions used in the book "Design and Analysis of Experiments with R", Lawson(2015) ISBN-13:978-1-4398-6813-3.
Author: John Lawson [aut, cre],
Gerhard Krennrich [aut],
Ruben Amoros [ctr]
Maintainer: John Lawson <lawsonjsl7net@gmail.com>
Diff between daewr versions 1.2-9 dated 2023-04-10 and 1.2-10 dated 2023-04-28
DESCRIPTION | 12 +++--- MD5 | 14 ++++--- NAMESPACE | 3 - R/DefScreen.R | 104 +++++++++++++++++++++++------------------------------- R/interleave.R |only R/stdord.R |only data/chem.rda |binary man/chem.Rd | 2 - man/interleave.Rd |only man/stdord.Rd |only 10 files changed, 62 insertions(+), 73 deletions(-)
Title: Versatile Curation of Table Metadata
Description: A YAML-based
mechanism for working with table metadata. Supports
compact syntax for creating, modifying, viewing, exporting,
importing, displaying, and plotting metadata coded as column
attributes. The 'yamlet' dialect is valid 'YAML' with
defaults and conventions chosen to improve readability.
See ?yamlet, ?decorate.data.frame and ?modify.default.
See ?read_yamlet ?write_yamlet, ?io_csv, and ?ggplot.decorated.
Author: Tim Bergsma
Maintainer: Tim Bergsma <bergsmat@gmail.com>
Diff between yamlet versions 0.10.20 dated 2023-03-21 and 0.10.21 dated 2023-04-28
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- R/selected.R | 6 +++++- build/vignette.rds |binary inst/doc/yamlet-introduction.html | 17 ++++++++++++----- man/arrange.decorated.Rd | 5 +++-- man/mutate.decorated.Rd | 2 +- man/slice.decorated.Rd | 4 ++-- man/summarise.decorated.Rd | 4 ++-- man/summarize.decorated.Rd | 4 ++-- tests/testthat/test-yamlet.R | 5 ++++- 11 files changed, 44 insertions(+), 29 deletions(-)
Title: Fast Spatial Regression using Moran Eigenvectors
Description: Functions for estimating spatial varying coefficient models, mixed models, and other spatial regression models for Gaussian and non-Gaussian data. Moran eigenvectors are used to an approximate Gaussian process modeling which is interpretable in terms of the Moran coefficient. The GP is used for modeling the spatial processes in residuals and regression coefficients. For details see Murakami (2021) <arXiv:1703.04467>.
Author: Daisuke Murakami <dmuraka@ism.ac.jp>
Maintainer: Daisuke Murakami <dmuraka@ism.ac.jp>
Diff between spmoran versions 0.2.2.8 dated 2023-04-23 and 0.2.2.9 dated 2023-04-28
DESCRIPTION | 8 +- MD5 | 10 +- R/meigen_f.R | 163 +++++++++++++++++++++--------------------- R/plot_s.R | 222 +++++++++++++++++++++++++++++----------------------------- R/resf_vc.R | 5 + man/plot_s.Rd | 53 +++++++------ 6 files changed, 234 insertions(+), 227 deletions(-)
Title: Accurate Timing Functions
Description: Provides infrastructure to accurately measure and compare
the execution time of R expressions.
Author: Olaf Mersmann [aut],
Claudia Beleites [ctb],
Rainer Hurling [ctb],
Ari Friedman [ctb],
Joshua M. Ulrich [cre]
Maintainer: Joshua M. Ulrich <josh.m.ulrich@gmail.com>
Diff between microbenchmark versions 1.4.9 dated 2021-11-09 and 1.4.10 dated 2023-04-28
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- R/autoplot.R | 19 +++++++++++-------- R/boxplot.R | 11 +++++++++-- R/internal.R | 7 +++---- R/print.R | 3 +++ R/summary.R | 28 ++++++++++++++++++++-------- inst/unitTests/runit_test_regression.R | 2 +- man/autoplot.microbenchmark.Rd | 11 +++-------- man/microbenchmark.Rd | 4 +++- man/summary.microbenchmark.Rd | 6 +++++- src/do_nothing.c | 2 +- src/do_nothing.h | 2 +- src/init.c | 2 +- src/nanotimer.c | 2 +- 15 files changed, 80 insertions(+), 55 deletions(-)
More information about microbenchmark at CRAN
Permanent link
Title: Disaggregation Modelling
Description: Fits disaggregation regression models using 'TMB' ('Template Model
Builder'). When the response data are aggregated to polygon level but
the predictor variables are at a higher resolution, these models can be
useful. Regression models with spatial random fields. The package is
described in detail in Nandi et al. (2023) <doi:10.18637/jss.v106.i11>.
Author: Anita Nandi [aut] ,
Tim Lucas [aut, cre] ,
Rohan Arambepola [aut],
Andre Python [aut]
Maintainer: Tim Lucas <timcdlucas@gmail.com>
Diff between disaggregation versions 0.1.4 dated 2022-09-06 and 0.2.0 dated 2023-04-28
DESCRIPTION | 10 LICENSE | 6 MD5 | 75 ++--- R/deprecated.R | 20 - R/fit_model.R | 7 R/roxygentags.R | 12 R/summary.R | 486 ++++++++++++++++++------------------- build/vignette.rds |binary inst/CITATION | 32 +- inst/doc/disaggregation.R | 64 ++-- inst/doc/disaggregation.Rmd | 8 inst/doc/disaggregation.html | 318 ++++++++---------------- man/as.disag_data.Rd | 114 ++++---- man/disaggregation-deprecated.Rd | 28 +- man/dummy.Rd | 22 - man/fit_model.Rd | 9 man/getCovariateRasters.Rd | 54 ++-- man/getPolygonData.Rd | 102 +++---- man/parallelExtract.Rd | 116 ++++---- man/predict.disag_model.Rd | 114 ++++---- man/predict_model.Rd | 90 +++--- man/predict_uncertainty.Rd | 110 ++++---- man/prepare_data.Rd | 218 ++++++++-------- man/print.disag_data.Rd | 38 +- man/print.disag_model.Rd | 38 +- man/print.disag_prediction.Rd | 38 +- man/summary.disag_data.Rd | 44 +-- man/summary.disag_model.Rd | 44 +-- man/summary.disag_prediction.Rd | 44 +-- tests/testthat.R | 10 tests/testthat/test-build-mesh.R | 64 ++-- tests/testthat/test-extract.R | 256 +++++++++---------- tests/testthat/test-matching.R | 50 +-- tests/testthat/test-plotting.R | 232 ++++++++--------- tests/testthat/test-prepare-data.R | 368 ++++++++++++++-------------- tests/testthat/test-summary.R | 260 +++++++++---------- vignettes/disaggregation.Rmd | 8 vignettes/disaggregation_files |only 38 files changed, 1725 insertions(+), 1784 deletions(-)
More information about disaggregation at CRAN
Permanent link
Title: Analysis of Multivariate Normal Datasets with Missing Values
Description: An integrated set of functions for the analysis of
multivariate normal datasets with missing values, including implementation of
the EM algorithm, data augmentation, and multiple imputation.
Author: Ported to R by Alvaro A. Novo <alvaro@novo-online.net>.
Original by Joseph L. Schafer <jls@stat.psu.edu>.
Maintainer: John Fox <jfox@mcmaster.ca>
Diff between norm versions 1.0-10.0 dated 2022-04-03 and 1.0-11.0 dated 2023-04-28
DESCRIPTION | 13 +++++-------- MD5 | 6 +++--- data/mdata.rda |binary src/init.c | 2 +- 4 files changed, 9 insertions(+), 12 deletions(-)
Title: Tools for Units of Measurement
Description: Collection of tools to make working with physical measurements
easier. Convert between metric and imperial units, or calculate a dimension's
unknown value from other dimensions' measurements.
Author: Matthew A. Birk
Maintainer: Matthew A. Birk <matthewabirk@gmail.com>
Diff between measurements versions 1.5.0 dated 2023-02-19 and 1.5.1 dated 2023-04-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ R/conv_unit.R | 4 ++-- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Converting Transport Data from GTFS Format to GPS-Like Records
Description: Convert general transit feed specification (GTFS) data to global positioning system (GPS) records in 'data.table' format. It also has some functions to subset GTFS data in time and space and to convert both representations to simple feature format.
Author: Rafael H. M. Pereira [aut] ,
Pedro R. Andrade [aut, cre] ,
Joao Bazzo [aut] ,
Daniel Herszenhut [ctb] ,
Marcin Stepniak [ctb],
Marcus Saraiva [ctb] ,
Ipea - Institue for Applied Economic Research [cph, fnd]
Maintainer: Pedro R. Andrade <pedro.andrade@inpe.br>
Diff between gtfs2gps versions 2.1-0 dated 2022-08-16 and 2.1-1 dated 2023-04-28
DESCRIPTION | 10 +- MD5 | 8 +- build/vignette.rds |binary inst/doc/intro_to_gtfs2gps.html | 148 ++++++++++++++++++++-------------------- tests/testthat/test_gtfs2gps.R | 10 +- 5 files changed, 91 insertions(+), 85 deletions(-)
Title: A Method to Download Department of Education College Scorecard
Data
Description: A method to download Department of Education College
Scorecard data using the public API
<https://collegescorecard.ed.gov/data/documentation/>. It is based on
the 'dplyr' model of piped commands to select and filter data in a
single chained function call. An API key from the U.S. Department of
Education is required.
Author: Benjamin Skinner [aut, cre]
Maintainer: Benjamin Skinner <btskinner@coe.ufl.edu>
Diff between rscorecard versions 0.24.0 dated 2022-10-20 and 0.26.0 dated 2023-04-28
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 8 ++++++++ R/sysdata.rda |binary 4 files changed, 15 insertions(+), 7 deletions(-)
More information about imbalanceDatRel at CRAN
Permanent link
Title: Stochastic Multi-Criteria Acceptability Analysis
Description: Implementation of the Stochastic Multi-Criteria Acceptability Analysis (SMAA) family of Multiple Criteria Decision Analysis (MCDA) methods. Tervonen, T. and Figueira, J. R. (2008) <doi:10.1002/mcda.407>.
Author: Gert van Valkenhoef [aut, cre, cph]
Maintainer: Gert van Valkenhoef <gert@gertvv.nl>
Diff between smaa versions 0.3-1 dated 2022-05-30 and 0.3-2 dated 2023-04-28
smaa-0.3-1/smaa/NEWS |only smaa-0.3-2/smaa/DESCRIPTION | 8 ++++---- smaa-0.3-2/smaa/MD5 | 8 ++++---- smaa-0.3-2/smaa/NEWS.md |only smaa-0.3-2/smaa/R/smaa.R | 3 ++- smaa-0.3-2/smaa/build/partial.rdb |binary 6 files changed, 10 insertions(+), 9 deletions(-)
Title: 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature
Selection Algorithms with a Sparse Matrix Support
Description: 'Rcpp' (free of 'Java'/'Weka') implementation of 'FSelector' entropy-based feature selection
algorithms based on an MDL discretization (Fayyad U. M., Irani K. B.: Multi-Interval Discretization of Continuous-Valued Attributes for Classification Learning.
In 13'th International Joint Conference on Uncertainly in Artificial Intelligence (IJCAI93), pages 1022-1029, Chambery, France, 1993.) <https://www.ijcai.org/Proceedings/93-2/Papers/022.pdf>
with a sparse matrix support.
Author: Zygmunt Zawadzki [aut, cre],
Marcin Kosinski [aut],
Krzysztof Slomczynski [ctb],
Damian Skrzypiec [ctb],
Patrick Schratz [ctb]
Maintainer: Zygmunt Zawadzki <zygmunt@zstat.pl>
Diff between FSelectorRcpp versions 0.3.10 dated 2023-04-23 and 0.3.11 dated 2023-04-28
DESCRIPTION | 6 MD5 | 10 - inst/doc/benchmarks_discretize.html | 248 ++++++++++++++++-------------------- inst/doc/get_started.html | 23 --- inst/doc/integer-variables.html | 27 --- src/init.c | 2 6 files changed, 132 insertions(+), 184 deletions(-)
Title: Fast Imputation of Missing Values
Description: Alternative implementation of the beautiful 'MissForest'
algorithm used to impute mixed-type data sets by chaining random
forests, introduced by Stekhoven, D.J. and Buehlmann, P. (2012)
<doi:10.1093/bioinformatics/btr597>. Under the hood, it uses the
lightning fast random jungle package 'ranger'. Between the iterative
model fitting, we offer the option of using predictive mean matching.
This firstly avoids imputation with values not already present in the
original data (like a value 0.3334 in 0-1 coded variable). Secondly,
predictive mean matching tries to raise the variance in the resulting
conditional distributions to a realistic level. This would allow e.g.
to do multiple imputation when repeating the call to missRanger(). A
formula interface allows to control which variables should be imputed
by which.
Author: Michael Mayer [aut, cre, cph]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between missRanger versions 2.2.0 dated 2023-03-24 and 2.2.1 dated 2023-04-28
DESCRIPTION | 6 - MD5 | 32 +++++----- NAMESPACE | 10 --- NEWS.md | 5 + R/missRanger.R | 107 ++++++++++++++++++----------------- R/pmm.R | 7 -- README.md | 2 build/vignette.rds |binary inst/doc/missRanger.Rmd | 4 - inst/doc/missRanger.html | 10 +-- inst/doc/multiple_imputation.html | 4 - inst/doc/working_with_censoring.html | 4 - man/convert.Rd | 14 ++-- man/missRanger.Rd | 10 +-- man/revert.Rd | 10 +-- man/typeof2.Rd | 11 +-- vignettes/missRanger.Rmd | 4 - 17 files changed, 119 insertions(+), 121 deletions(-)
Title: Covariate Balance Tables and Plots
Description: Generate balance tables and plots for covariates of groups preprocessed through
matching, weighting or subclassification, for example, using propensity scores. Includes
integration with 'MatchIt', 'twang', 'Matching', 'optmatch', 'CBPS', 'ebal', 'WeightIt',
'cem', 'sbw', and 'designmatch' for assessing balance on the output of their preprocessing
functions. Users can also specify data for balance assessment not generated through
the above packages. Also included are methods for assessing balance in clustered or
multiply imputed data sets or data sets with multi-category, continuous, or longitudinal treatments.
Author: Noah Greifer [aut, cre]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between cobalt versions 4.5.0 dated 2023-03-22 and 4.5.1 dated 2023-04-28
DESCRIPTION | 8 MD5 | 183 +++--- NAMESPACE | 3 NEWS.md | 26 R/SHARED.R | 623 +++++++------------- R/bal.compute.R | 696 ++++++++++++++++------- R/bal.plot.R | 61 -- R/bal.tab.CBPS.R | 15 R/bal.tab.Match.R | 11 R/bal.tab.R | 114 +-- R/bal.tab.cem.match.R | 11 R/bal.tab.default.R | 18 R/bal.tab.formula.R | 26 R/bal.tab.matchit.R | 15 R/bal.tab.mimids.R | 9 R/bal.tab.optmatch.R | 7 R/bal.tab.ps.R | 19 R/bal.tab.sbwcau.R | 17 R/bal.tab.time.list.R | 22 R/bal.tab.weightit.R | 19 R/balance-statistics.R | 60 -- R/balance-summary.R | 234 +++++-- R/base.bal.tab.R | 8 R/chk-functions.R |only R/class-bal.tab.cluster.R | 8 R/class-bal.tab.imp.R | 8 R/class-bal.tab.msm.R | 6 R/class-bal.tab.multi.R | 13 R/class-bal.tab.subclass.R | 8 R/cobalt-package.R | 4 R/display-options.R | 18 R/f.build.R | 21 R/functions_for_processing.R | 856 +++++++++++++--------------- R/get.w.R | 127 ++-- R/love.plot.R | 138 ++-- R/print.bal.tab.R | 294 +++++---- R/set.cobalt.options.R | 56 - R/splitfactor.R | 10 R/var.names.R | 39 - R/x2base.R | 464 +++++++-------- README.md | 2 build/cobalt.pdf |binary build/vignette.rds |binary inst/doc/cobalt.R | 407 ++++++------- inst/doc/cobalt.Rmd | 47 - inst/doc/cobalt.html | 921 ++++++++++++++++++++++--------- inst/doc/longitudinal-treat.R | 62 +- inst/doc/longitudinal-treat.Rmd | 82 +- inst/doc/longitudinal-treat.html | 379 ++++++------ inst/doc/love.plot.R | 278 ++++----- inst/doc/love.plot.html | 13 inst/doc/optimizing-balance.R | 19 inst/doc/optimizing-balance.Rmd | 33 - inst/doc/optimizing-balance.html | 141 ++-- inst/doc/other-packages.R | 115 +-- inst/doc/other-packages.Rmd | 15 inst/doc/other-packages.html | 393 ++++++++----- inst/doc/segmented-data.R | 88 +- inst/doc/segmented-data.Rmd | 22 inst/doc/segmented-data.html | 358 +++++++++--- man/bal.compute.Rd | 63 +- man/bal.plot.Rd | 32 - man/bal.tab.CBPS.Rd | 14 man/bal.tab.Match.Rd | 10 man/bal.tab.Rd | 111 +-- man/bal.tab.cem.match.Rd | 10 man/bal.tab.default.Rd | 16 man/bal.tab.designmatch.Rd | 8 man/bal.tab.ebalance.Rd | 8 man/bal.tab.formula.Rd | 16 man/bal.tab.matchit.Rd | 14 man/bal.tab.mimids.Rd | 6 man/bal.tab.optmatch.Rd | 8 man/bal.tab.ps.Rd | 12 man/bal.tab.sbwcau.Rd | 10 man/bal.tab.time.list.Rd | 14 man/bal.tab.weightit.Rd | 12 man/balance-summary.Rd | 13 man/cobalt-package.Rd | 4 man/display-options.Rd | 18 man/f.build.Rd | 2 man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-3-2.png |binary man/love.plot.Rd | 8 man/print.bal.tab.Rd | 22 man/set.cobalt.options.Rd | 2 tests/testthat/test-bal.compute.R | 12 vignettes/cobalt.Rmd | 47 - vignettes/longitudinal-treat.Rmd | 82 +- vignettes/optimizing-balance.Rmd | 33 - vignettes/other-packages.Rmd | 15 vignettes/references.bib | 61 ++ vignettes/segmented-data.Rmd | 22 93 files changed, 4685 insertions(+), 3670 deletions(-)
Title: Isolate Functions for Remote Execution
Description: Sending functions to remote processes can be wasteful of
resources because they carry their environments with them. With the
carrier package, it is easy to create functions that are isolated from
their environment. These isolated functions, also called crates, print
at the console with their total size and can be easily tested locally
before being sent to a remote.
Author: Lionel Henry [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Lionel Henry <lionel@posit.co>
Diff between carrier versions 0.1.0 dated 2018-10-16 and 0.1.1 dated 2023-04-28
DESCRIPTION | 42 +++++++++++++++++++++--------------------- LICENSE |only MD5 | 17 ++++++++++------- NEWS.md | 7 +++++++ R/carrier-package.R |only R/crate.R | 34 +++++++++++++--------------------- README.md | 21 +++++++++++++++++---- man/carrier-package.Rd |only man/crate.Rd | 8 ++++---- tests/testthat.R | 4 ++-- tests/testthat/test-crate.R | 38 ++++++++++++++++++++------------------ 11 files changed, 94 insertions(+), 77 deletions(-)
Title: Functions for Calculating Fit-Robustness of CNA-Solutions
Description: Functions for automatically performing
a reanalysis series
on a data set using CNA, and for calculating the fit-robustness
of the resulting models, as described in
Parkkinen and Baumgartner (2021) <doi:10.1177/0049124120986200>.
Author: Veli-Pekka Parkkinen [aut, cre, cph],
Michael Baumgartner [aut, cph],
Mathias Ambuehl [aut, cph]
Maintainer: Veli-Pekka Parkkinen <parkkinenv@gmail.com>
Diff between frscore versions 0.2.0 dated 2022-05-20 and 0.3.1 dated 2023-04-28
DESCRIPTION | 14 +-- MD5 | 41 ++++++--- NAMESPACE | 15 +++ NEWS.md | 25 ++++++ R/causal_submodel.R |only R/frscore-package.R |only R/frscore.R | 58 +++++++++++-- R/frscored_cna.R | 40 +++++++-- R/fsubmodel.R |only README.md | 35 +++++++- build |only man/causal_submodel.Rd |only man/figures |only man/frscore-package.Rd |only man/frscore.Rd | 87 ++++++++++++++++---- man/frscored_cna.Rd | 57 ++++++++++--- man/rean_cna.Rd | 16 ++- tests/testthat/_snaps/frscore.md | 91 --------------------- tests/testthat/_snaps/frscored_cna.md | 141 ++++++++++++++++++++++++++++++++++ tests/testthat/test_causal_submodel.R |only tests/testthat/test_frscore.R | 21 +++-- tests/testthat/test_frscored_cna.R | 5 + 22 files changed, 469 insertions(+), 177 deletions(-)
Title: Efficient Bayesian Algorithms for Binary and Categorical Data
Regression Models
Permanent link
Title: Reinforcement Learning Trees
Description: Random forest with a variety of additional features for regression, classification and survival analysis.
The features include: parallel computing with OpenMP, embedded model for selecting the splitting variable,
based on Zhu, Zeng & Kosorok (2015) <doi:10.1080/01621459.2015.1036994>, subject weight, variable weight,
tracking subjects used in each tree, etc.
Author: Ruoqing Zhu [aut, cre, cph]
Maintainer: Ruoqing Zhu <teazrq@gmail.com>
Diff between RLT versions 3.2.5 dated 2023-02-17 and 3.2.6 dated 2023-04-28
DESCRIPTION | 8 ++++---- MD5 | 5 +++-- R/zzz.r | 3 ++- README.md |only 4 files changed, 9 insertions(+), 7 deletions(-)
Title: Code and Obtain Customized Planned Comparisons with 'appRiori'
Description: With 'appRiori', users upload the research variables and the app guides them to the best set of comparisons fitting the hypotheses, for both main and interaction effects. Through a graphical explanation and empirical examples on reproducible data, it is shown that it is possible to understand both the logic behind the planned comparisons and the way to interpret them when a model is tested.
Author: Umberto Granziol [aut, cre],
Maximilian Rabe [aut] ,
Andrea Spoto [aut],
Giulio Vidotto [aut]
Maintainer: Umberto Granziol <umberto.granziol@unipd.it>
Diff between appRiori versions 0.0.1 dated 2023-02-24 and 0.0.2 dated 2023-04-28
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- inst/app/server.R | 6 +++--- 3 files changed, 9 insertions(+), 9 deletions(-)
Title: Circular / Ring Buffers
Description: Circular / ring buffers in R and C. There are a couple
of different buffers here with different implementations that
represent different trade-offs.
Author: Rich FitzJohn [aut, cre],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between ring versions 1.0.3 dated 2021-06-15 and 1.0.4 dated 2023-04-28
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- README.md | 4 ++-- build/vignette.rds |binary inst/WORDLIST | 1 + inst/doc/ring.html | 18 +++++++++++++----- inst/doc/ring_applications.html | 18 +++++++++++++----- src/convert.c | 2 +- src/convert.h | 2 +- 9 files changed, 42 insertions(+), 25 deletions(-)
Title: Solve Delay Differential Equations
Description: Solves ordinary and delay differential equations, where
the objective function is written in either R or C. Suitable only
for non-stiff equations, the solver uses a 'Dormand-Prince' method
that allows interpolation of the solution at any point. This
approach is as described by Hairer, Norsett and Wanner (1993)
<ISBN:3540604529>. Support is also included for iterating
difference equations.
Author: Rich FitzJohn [aut, cre],
Wes Hinsley [aut],
Imperial College of Science, Technology and Medicine [cph]
Maintainer: Rich FitzJohn <rich.fitzjohn@gmail.com>
Diff between dde versions 1.0.1 dated 2020-01-16 and 1.0.4 dated 2023-04-28
DESCRIPTION | 8 MD5 | 52 - NEWS.md | 14 R/common.R | 5 R/difeq_replicate.R | 188 +++- R/dopri.R | 14 R/util.R | 8 README.md | 7 build/vignette.rds |binary inst/WORDLIST | 2 inst/doc/dde.R | 46 - inst/doc/dde.Rmd | 2 inst/doc/dde.html | 1341 +++++++++++++++------------------- man/difeq.Rd | 5 man/difeq_replicate.Rd | 116 ++ man/dopri.Rd | 28 src/difeq.c | 2 src/difeq.h | 2 src/dopri.c | 18 src/dopri.h | 3 src/r_difeq.c | 42 - src/r_dopri.c | 2 src/r_dopri.h | 1 src/zzz.c | 2 tests/testthat/test-difeq-replicate.R | 163 ++-- tests/testthat/test-ode.R | 23 vignettes/dde.Rmd | 2 27 files changed, 1184 insertions(+), 912 deletions(-)
Title: Tools for Data Splitting
Description: Fast, lightweight toolkit for data splitting. Data sets can
be partitioned into disjoint groups (e.g. into training, validation,
and test) or into (repeated) k-folds for subsequent cross-validation.
Besides basic splits, the package supports stratified, grouped as well
as blocked splitting. Furthermore, cross-validation folds for time
series data can be created. See e.g. Hastie et al. (2001)
<doi:10.1007/978-0-387-84858-7> for the basic background on data
partitioning and cross-validation.
Author: Michael Mayer [aut, cre]
Maintainer: Michael Mayer <mayermichael79@gmail.com>
Diff between splitTools versions 0.3.3 dated 2023-03-23 and 1.0.0 dated 2023-04-28
DESCRIPTION | 6 MD5 | 34 ++-- NAMESPACE | 3 NEWS.md | 6 R/create_folds.R | 66 +++++--- R/create_timefolds.R | 42 +++-- R/multi_strata.R | 32 +--- R/partition.R | 57 +++++-- README.md | 16 +- build/vignette.rds |binary inst/doc/splitTools.R | 40 +++-- inst/doc/splitTools.Rmd | 90 ++++++----- inst/doc/splitTools.html | 359 +++++++++++++++++++++++------------------------ man/create_folds.Rd | 37 +++- man/create_timefolds.Rd | 21 ++ man/multi_strata.Rd | 31 +--- man/partition.Rd | 40 +++-- vignettes/splitTools.Rmd | 90 ++++++----- 18 files changed, 537 insertions(+), 433 deletions(-)
Title: ICA-Based Matrix/Tensor Decomposition
Description: Some functions for performing ICA, MICA, Group ICA, and Multilinear ICA are implemented.
ICA, MICA/Group ICA, and Multilinear ICA extract statistically independent components from single matrix, multiple matrices, and single tensor, respectively.
For the details of these methods, see the reference section of GitHub README.md <https://github.com/rikenbit/iTensor>.
Author: Koki Tsuyuzaki [aut, cre]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between iTensor versions 1.0.0 dated 2023-04-27 and 1.0.2 dated 2023-04-28
DESCRIPTION | 6 - MD5 | 22 +-- build/vignette.rds |binary inst/NEWS | 4 inst/doc/iTensor-1.html | 239 ++++++++++++++++++++--------------------- inst/doc/iTensor-2.R | 19 --- inst/doc/iTensor-2.Rmd | 19 --- inst/doc/iTensor-2.html | 230 ++++++++++++++++++--------------------- inst/doc/iTensor-3.html | 205 ++++++++++++++++++----------------- tests/testthat.R | 10 + tests/testthat/test-GroupICA.R | 62 +++++----- vignettes/iTensor-2.Rmd | 19 --- 12 files changed, 404 insertions(+), 431 deletions(-)
Title: Basic Sequence Processing Tool for Biological Data
Description: Primarily created as an easy and understanding way to do basic sequences surrounding the central dogma of molecular biology.
Author: Ambu Vijayan [aut, cre] ,
J. Sreekumar [aut]
Maintainer: Ambu Vijayan <ambuvjyn@gmail.com>
Diff between baseq versions 0.1.1 dated 2023-04-25 and 0.1.2 dated 2023-04-28
baseq-0.1.1/baseq/inst/extdata/sample2_fa_clean.fasta |only baseq-0.1.2/baseq/DESCRIPTION | 6 baseq-0.1.2/baseq/MD5 | 42 ++--- baseq-0.1.2/baseq/NAMESPACE | 2 baseq-0.1.2/baseq/NEWS.md | 4 baseq-0.1.2/baseq/R/clean_DNA.R | 146 +++++++++--------- baseq-0.1.2/baseq/R/clean_RNA.R | 146 +++++++++--------- baseq-0.1.2/baseq/R/fastq_to_fasta.R | 93 ++++++----- baseq-0.1.2/baseq/R/write_df_to_fasta.R | 96 ++++++----- baseq-0.1.2/baseq/R/write_df_to_fastq.R | 94 ++++++----- baseq-0.1.2/baseq/R/write_dna_to_rna.R |only baseq-0.1.2/baseq/R/write_list_to_fasta.R | 87 +++++----- baseq-0.1.2/baseq/R/write_list_to_fastq.R | 101 ++++++------ baseq-0.1.2/baseq/R/write_rna_to_dna.R |only baseq-0.1.2/baseq/README.md | 12 + baseq-0.1.2/baseq/inst/extdata/sample3_fa.fasta |only baseq-0.1.2/baseq/man/clean_DNA_file.Rd | 16 + baseq-0.1.2/baseq/man/clean_RNA_file.Rd | 16 + baseq-0.1.2/baseq/man/fastq_to_fasta.Rd | 9 - baseq-0.1.2/baseq/man/write.df_to_fasta.Rd | 17 +- baseq-0.1.2/baseq/man/write.df_to_fastq.Rd | 15 + baseq-0.1.2/baseq/man/write.dna_to_rna.Rd |only baseq-0.1.2/baseq/man/write.list_to_fasta.Rd | 13 + baseq-0.1.2/baseq/man/write.list_to_fastq.Rd | 25 ++- baseq-0.1.2/baseq/man/write.rna_to_dna.Rd |only 25 files changed, 548 insertions(+), 392 deletions(-)
Title: Add Inset Panels to Maps
Description: Helper to add insets based on geom_sf() from 'ggplot2'.
This package gives you a drop-in replacement for geom_sf() that supports
adding a zoomed inset map without having to create and embed a separate plot.
Author: Carl Suster [aut, cre] ,
Western Sydney Local Health District, NSW Health [cph]
Maintainer: Carl Suster <Carl.Suster@health.nsw.gov.au>
Diff between ggmapinset versions 0.2.3 dated 2023-02-21 and 0.3.0 dated 2023-04-28
ggmapinset-0.2.3/ggmapinset/R/build_sf_inset_layers.R |only ggmapinset-0.2.3/ggmapinset/inst/doc/insets.R |only ggmapinset-0.2.3/ggmapinset/inst/doc/insets.Rmd |only ggmapinset-0.2.3/ggmapinset/inst/doc/insets.html |only ggmapinset-0.2.3/ggmapinset/vignettes/insets.Rmd |only ggmapinset-0.3.0/ggmapinset/DESCRIPTION | 11 ggmapinset-0.3.0/ggmapinset/MD5 | 47 +- ggmapinset-0.3.0/ggmapinset/NAMESPACE | 9 ggmapinset-0.3.0/ggmapinset/NEWS.md |only ggmapinset-0.3.0/ggmapinset/R/configure_inset.R | 11 ggmapinset-0.3.0/ggmapinset/R/coord_sf_inset.R |only ggmapinset-0.3.0/ggmapinset/R/geom_inset_frame.R | 151 ++++++-- ggmapinset-0.3.0/ggmapinset/R/geom_sf_inset.R | 196 +++++------ ggmapinset-0.3.0/ggmapinset/R/geom_sf_text_inset.R |only ggmapinset-0.3.0/ggmapinset/R/inset.R |only ggmapinset-0.3.0/ggmapinset/R/layer_helpers.R |only ggmapinset-0.3.0/ggmapinset/R/stat_sf_coordinates_inset.R |only ggmapinset-0.3.0/ggmapinset/R/stat_sf_inset.R |only ggmapinset-0.3.0/ggmapinset/R/transform_to_inset.R |only ggmapinset-0.3.0/ggmapinset/README.md | 76 +++- ggmapinset-0.3.0/ggmapinset/build/vignette.rds |binary ggmapinset-0.3.0/ggmapinset/inst/doc/ggmapinset.R |only ggmapinset-0.3.0/ggmapinset/inst/doc/ggmapinset.Rmd |only ggmapinset-0.3.0/ggmapinset/inst/doc/ggmapinset.html |only ggmapinset-0.3.0/ggmapinset/man/build_sf_inset_layers.Rd | 32 + ggmapinset-0.3.0/ggmapinset/man/configure_inset.Rd | 6 ggmapinset-0.3.0/ggmapinset/man/coord_sf_inset.Rd |only ggmapinset-0.3.0/ggmapinset/man/figures/README-example-1.png |binary ggmapinset-0.3.0/ggmapinset/man/geom_inset_frame.Rd | 46 +- ggmapinset-0.3.0/ggmapinset/man/geom_sf_inset.Rd | 153 ++++++-- ggmapinset-0.3.0/ggmapinset/man/get_inset_config.Rd |only ggmapinset-0.3.0/ggmapinset/man/ggmapinset-package.Rd | 1 ggmapinset-0.3.0/ggmapinset/man/stat_sf_coordinates_inset.Rd |only ggmapinset-0.3.0/ggmapinset/man/transform_to_inset.Rd |only ggmapinset-0.3.0/ggmapinset/vignettes/ggmapinset.Rmd |only 35 files changed, 481 insertions(+), 258 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-02-22 0.9.3
2021-10-18 0.9.2
2021-10-01 0.9.1
2021-09-23 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-23 0.2.1
2021-11-20 0.2.0
2020-10-08 0.1.4
2020-08-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-03-24 1.8
2016-09-17 1.7
2016-07-17 1.6
2016-02-01 1.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-09-17 1.4
2016-07-26 1.3
2016-02-04 1.2
Title: Helper Functions for Bayesian Analyses
Description: Functions to 'numericise' 'R' objects (coerce to numeric
objects), summarise 'MCMC' (Monte Carlo Markov Chain) samples and
calculate deviance residuals as well as 'R' translations of some
'BUGS' (Bayesian Using Gibbs Sampling), 'JAGS' (Just Another Gibbs
Sampler), 'STAN' and 'TMB' (Template Model Builder) functions.
Author: Joe Thorley [aut, cre] ,
Nicole Hill [aut] ,
Kirill Mueller [ctb] ,
Nadine Hussein [ctb] ,
Poisson Consulting [cph, fnd]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between extras versions 0.5.0 dated 2022-10-30 and 0.6.0 dated 2023-04-28
DESCRIPTION | 17 - MD5 | 131 +++++++----- NAMESPACE | 14 + NEWS.md | 24 ++ R/bern.R | 7 R/dev.R | 78 +++++++ R/log-lik.R | 74 +++++++ R/params.R | 2 R/ran.R | 41 ++++ R/res.R | 135 ++++++++++++- README.md | 63 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/beta-binomial-deviance-residuals.R |only inst/doc/beta-binomial-deviance-residuals.Rmd |only inst/doc/beta-binomial-deviance-residuals.html |only inst/doc/deviance-residuals.html | 140 ++++++------- man/dev_bern.Rd | 5 man/dev_beta_binom.Rd |only man/dev_binom.Rd | 5 man/dev_gamma.Rd |only man/dev_gamma_pois.Rd | 7 man/dev_gamma_pois_zi.Rd | 2 man/dev_lnorm.Rd | 5 man/dev_neg_binom.Rd | 7 man/dev_norm.Rd | 5 man/dev_pois.Rd | 5 man/dev_pois_zi.Rd | 5 man/dev_student.Rd |only man/extras-package.Rd | 5 man/log_lik_bern.Rd | 5 man/log_lik_beta_binom.Rd |only man/log_lik_binom.Rd | 5 man/log_lik_gamma.Rd |only man/log_lik_gamma_pois.Rd | 7 man/log_lik_gamma_pois_zi.Rd | 7 man/log_lik_lnorm.Rd | 5 man/log_lik_neg_binom.Rd | 7 man/log_lik_norm.Rd | 5 man/log_lik_pois.Rd | 5 man/log_lik_pois_zi.Rd | 5 man/log_lik_student.Rd |only man/params.Rd | 2 man/ran_bern.Rd | 4 man/ran_beta_binom.Rd |only man/ran_binom.Rd | 4 man/ran_gamma.Rd | 4 man/ran_gamma_pois.Rd | 6 man/ran_gamma_pois_zi.Rd | 6 man/ran_lnorm.Rd | 4 man/ran_neg_binom.Rd | 6 man/ran_norm.Rd | 4 man/ran_pois.Rd | 4 man/ran_pois_zi.Rd | 4 man/ran_student.Rd |only man/res_bern.Rd | 5 man/res_beta_binom.Rd |only man/res_binom.Rd | 5 man/res_gamma.Rd |only man/res_gamma_pois.Rd | 7 man/res_gamma_pois_zi.Rd | 7 man/res_lnorm.Rd | 5 man/res_neg_binom.Rd | 7 man/res_norm.Rd | 5 man/res_pois.Rd | 5 man/res_pois_zi.Rd | 5 man/res_student.Rd |only tests/testthat/test-bern.R | 2 tests/testthat/test-dev.R | 252 ++++++++++++++++++++++++- tests/testthat/test-log-lik.R | 102 ++++++++++ tests/testthat/test-ran.R | 95 +++++++++ tests/testthat/test-res.R | 227 ++++++++++++++++++++++ tests/testthat/test-zscore.R | 2 vignettes/beta-binomial-deviance-residuals.Rmd |only 74 files changed, 1372 insertions(+), 235 deletions(-)