Sun, 30 Apr 2023

Package sbtools updated to version 1.2.0 with previous version 1.1.21 dated 2022-11-03

Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase <https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and collaborative data management platform. Functions included for querying ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre], Luke Winslow [aut], Scott Chamberlain [ctb], Alison Appling [ctb], Jordan Read [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>

Diff between sbtools versions 1.1.21 dated 2022-11-03 and 1.2.0 dated 2023-04-30

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Package nftbart updated to version 1.6 with previous version 1.5 dated 2023-01-06

Title: Nonparametric Failure Time Bayesian Additive Regression Trees
Description: Nonparametric Failure Time (NFT) Bayesian Additive Regression Trees (BART): Time-to-event Machine Learning with Heteroskedastic Bayesian Additive Regression Trees (HBART) and Low Information Omnibus (LIO) Dirichlet Process Mixtures (DPM). An NFT BART model is of the form Y = mu + f(x) + sd(x) E where functions f and sd have BART and HBART priors, respectively, while E is a nonparametric error distribution due to a DPM LIO prior hierarchy. See the following for a complete description of the model at <doi:10.1111/biom.13857>.
Author: Rodney Sparapani [aut, cre], Robert McCulloch [aut], Matthew Pratola [ctb], Hugh Chipman [ctb]
Maintainer: Rodney Sparapani <rsparapa@mcw.edu>

Diff between nftbart versions 1.5 dated 2023-01-06 and 1.6 dated 2023-04-30

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Package EIAapi updated to version 0.1.1 with previous version 0.1.0 dated 2023-04-12

Title: Query Data from the 'EIA' API
Description: Provides a function to query and extract data from the 'US Energy Information Administration' ('EIA') API V2 <https://www.eia.gov/opendata/>. The 'EIA' API provides a variety of information, in a time series format, about the energy sector in the US. The API is open, free, and requires an access key and registration at <https://www.eia.gov/opendata/>.
Author: Rami Krispin [aut, cre]
Maintainer: Rami Krispin <rami.krispin@gmail.com>

Diff between EIAapi versions 0.1.0 dated 2023-04-12 and 0.1.1 dated 2023-04-30

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Package cropcircles updated to version 0.2.3 with previous version 0.2.2.1 dated 2023-04-27

Title: Crops an Image to a Circle
Description: Images are cropped to a circle with a transparent background. The function takes a vector of images, either local or from a link, and circle crops the image. Paths to the cropped image are returned for plotting with 'ggplot2'.
Author: Daniel Oehm [aut, cre]
Maintainer: Daniel Oehm <danieloehm@gmail.com>

Diff between cropcircles versions 0.2.2.1 dated 2023-04-27 and 0.2.3 dated 2023-04-30

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Package odeGUTS updated to version 1.0.2 with previous version 1.0.1 dated 2021-09-10

Title: Solve ODE for GUTS-RED-SD and GUTS-RED-IT Using Compiled Code
Description: Allows performing forwards prediction for the General Unified Threshold model of Survival using compiled ode code. This package was created to avoid dependency with the 'morse' package that requires the installation of 'JAGS'. This package is based on functions from the 'morse' package v3.3.1: Virgile Baudrot, Sandrine Charles, Marie Laure Delignette-Muller, Wandrille Duchemin, Benoit Goussen, Nils Kehrein, Guillaume Kon-Kam-King, Christelle Lopes, Philippe Ruiz, Alexander Singer and Philippe Veber (2021) <https://CRAN.R-project.org/package=morse>.
Author: Benoit Goussen [aut, cre]
Maintainer: Benoit Goussen <benoit.goussen@ibacon.com>

Diff between odeGUTS versions 1.0.1 dated 2021-09-10 and 1.0.2 dated 2023-04-30

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Package lrstat updated to version 0.1.12 with previous version 0.1.11 dated 2023-02-09

Title: Power and Sample Size Calculation for Non-Proportional Hazards
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168).
Author: Kaifeng Lu
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>

Diff between lrstat versions 0.1.11 dated 2023-02-09 and 0.1.12 dated 2023-04-30

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New package gps with initial version 1.1
Package: gps
Version: 1.1
Date: 2023-04-29
Title: General P-Splines
Author: Zheyuan Li [aut, cre]
Maintainer: Zheyuan Li <zheyuan.li@bath.edu>
Depends: R (>= 4.0.0)
Imports: stats, splines, Matrix, methods, graphics, grDevices
Description: General P-splines are non-uniform B-splines penalized by a general difference penalty, proposed by Li and Cao (2022) <arXiv:2201.06808>. Constructible on arbitrary knots, they extend the standard P-splines of Eilers and Marx (1996) <doi:10.1214/ss/1038425655>. They are also related to the O-splines of O'Sullivan (1986) <doi:10.1214/ss/1177013525> via a sandwich formula that links a general difference penalty to a derivative penalty. The package includes routines for setting up and handling difference and derivative penalties. It also fits P-splines and O-splines to (x, y) data (optionally weighted) for a grid of smoothing parameter values in the automatic search intervals of Li and Cao (2023) <doi:10.1007/s11222-022-10178-z>. It aims to facilitate other packages to implement P-splines or O-splines as a smoothing tool in their model estimation framework.
License: GPL-3
NeedsCompilation: yes
URL: https://github.com/ZheyuanLi/gps
Packaged: 2023-04-29 10:35:33 UTC; lzy
Repository: CRAN
Date/Publication: 2023-04-30 16:20:02 UTC

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Package cycloids updated to version 1.0.1 with previous version 1.0 dated 2013-11-29

Title: Tools for Calculating Hypocycloids, Epicycloids, Hypotrochoids, and Epitrochoids
Description: Tools for calculating coordinate representations of hypocycloids, epicyloids, hypotrochoids, and epitrochoids (altogether called 'cycloids' here) with different scaling and positioning options. The cycloids can be visualised with any appropriate graphics function in R.
Author: Peter Biber
Maintainer: Peter Biber <castor.fiber@gmx.de>

Diff between cycloids versions 1.0 dated 2013-11-29 and 1.0.1 dated 2023-04-30

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Package monoreg updated to version 2.1 with previous version 2.0 dated 2022-02-11

Title: Bayesian Monotonic Regression Using a Marked Point Process Construction
Description: An extended version of the nonparametric Bayesian monotonic regression procedure described in Saarela & Arjas (2011) <DOI:10.1111/j.1467-9469.2010.00716.x>, allowing for multiple additive monotonic components in the linear predictor, and time-to-event outcomes through case-base sampling. The extension and its applications, including estimation of absolute risks, are described in Saarela & Arjas (2015) <DOI:10.1111/sjos.12125>. The package also implements the nonparametric ordinal regression model described in Saarela, Rohrbeck & Arjas <DOI:10.1214/22-BA1310>.
Author: Olli Saarela, Christian Rohrbeck
Maintainer: Olli Saarela <olli.saarela@utoronto.ca>

Diff between monoreg versions 2.0 dated 2022-02-11 and 2.1 dated 2023-04-30

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Package mumm (with last version 0.2.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-08-15 0.2.1
2018-07-01 0.2.0

Permanent link
Package idmTPreg (with last version 1.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-02-27 1.1
2017-07-28 1.0

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Package seededlda updated to version 0.9.0 with previous version 0.8.4 dated 2023-03-23

Title: Seeded Sequential LDA for Topic Modeling
Description: Seeded Sequential LDA can classify sentences of texts into pre-define topics with a small number of seed words (Watanabe & Baturo, forthcoming). Implements Seeded LDA (Lu et. al., 2010) <doi:10.1109/ICDMW.2011.125> and Sequential LDA (Du et al., 2012) <doi:10.1007/s10115-011-0425-1> algorithms based on the GibbsLDA++ library.
Author: Kohei Watanabe [aut, cre, cph], Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>

Diff between seededlda versions 0.8.4 dated 2023-03-23 and 0.9.0 dated 2023-04-30

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Package recmap updated to version 1.0.15 with previous version 1.0.14 dated 2023-04-23

Title: Compute the Rectangular Statistical Cartogram
Description: Provides an interface and a C++ implementation of the RecMap MP2 construction heuristic (Panse C. (2018) <doi:10.18637/jss.v086.c01>). This algorithm draws maps according to a given statistical value (e.g., election results, population or epidemiological data). The basic idea of the RecMap algorithm is that each map region (e.g., different countries) is represented by a rectangle. The area of each rectangle represents the statistical value given as input (maintain zero cartographic error). Documentation about the usage of the recmap algorithm is provided by a vignette included in this package.
Author: Christian Panse [aut, cre]
Maintainer: Christian Panse <Christian.Panse@gmail.com>

Diff between recmap versions 1.0.14 dated 2023-04-23 and 1.0.15 dated 2023-04-30

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Package orthoDr updated to version 0.6.7 with previous version 0.6.5 dated 2022-07-19

Title: Semi-Parametric Dimension Reduction Models Using Orthogonality Constrained Optimization
Description: Utilize an orthogonality constrained optimization algorithm of Wen & Yin (2013) <DOI:10.1007/s10107-012-0584-1> to solve a variety of dimension reduction problems in the semiparametric framework, such as Ma & Zhu (2012) <DOI:10.1080/01621459.2011.646925>, Ma & Zhu (2013) <DOI:10.1214/12-AOS1072>, Sun, Zhu, Wang & Zeng (2019) <DOI:10.1093/biomet/asy064> and Zhou, Zhu & Zeng (2021) <DOI:10.1093/biomet/asaa087>. The package also implements some existing dimension reduction methods such as hMave by Xia, Zhang, & Xu (2010) <DOI:10.1198/jasa.2009.tm09372> and partial SAVE by Feng, Wen & Zhu (2013) <DOI:10.1080/01621459.2012.746065>. It also serves as a general purpose optimization solver for problems with orthogonality constraints, i.e., in Stiefel manifold. Parallel computing for approximating the gradient is enabled through 'OpenMP'.
Author: Ruilin Zhao [aut, cph], Ruoqing Zhu [aut, cre, cph] , Jiyang Zhang [aut, cph], Wenzhuo Zhou [aut, cph], Peng Xu [aut, cph], James Joseph Balamuta [ctb]
Maintainer: Ruoqing Zhu <teazrq@gmail.com>

Diff between orthoDr versions 0.6.5 dated 2022-07-19 and 0.6.7 dated 2023-04-30

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New package MatTransMix with initial version 0.1.16
Package: MatTransMix
Version: 0.1.16
Date: 2023-04-27
Title: Clustering with Matrix Gaussian and Matrix Transformation Mixture Models
Depends: R (>= 3.0.0)
LazyLoad: yes
LazyData: no
Description: Provides matrix Gaussian mixture models, matrix transformation mixture models and their model-based clustering results. The parsimonious models of the mean matrices and variance covariance matrices are implemented with a total of 196 variations.
License: GPL (>= 2)
Imports: mvtnorm
Packaged: 2023-04-28 17:55:46 UTC; root
Author: Xuwen Zhu [aut, cre], Volodymyr Melnykov [aut], Shuchismita Sarkar [ctb], Michael Hutt [ctb, cph], Stephen Moshier [ctb, cph], Rouben Rostamian [ctb, cph], Carl Edward Rasmussen [ctb, cph], Dianne Cook [ctb, cph]
Maintainer: Xuwen Zhu <xzhu20@cba.ua.edu>
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2023-04-30 10:50:09 UTC

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Package prqlr updated to version 0.4.0 with previous version 0.3.0 dated 2023-03-16

Title: R Bindings for the 'prql-compiler' Rust Library
Description: Provides a function to convert 'PRQL' strings to 'SQL' strings. Combined with other R functions that take 'SQL' as an argument, 'PRQL' can be used on R.
Author: Tatsuya Shima [aut, cre]
Maintainer: Tatsuya Shima <ts1s1andn@gmail.com>

Diff between prqlr versions 0.3.0 dated 2023-03-16 and 0.4.0 dated 2023-04-30

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Package gRc updated to version 0.4.5 with previous version 0.4.4 dated 2021-04-03

Title: Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
Description: Estimation, model selection and other aspects of statistical inference in Graphical Gaussian models with edge and vertex symmetries (Graphical Gaussian models with colours). Documentation about 'gRc' is provided in the paper by Hojsgaard and Lauritzen (2007, <doi:10.18637/jss.v023.i06>) and the paper by Hojsgaard and Lauritzen (2008, <doi:10.1111/j.1467-9868.2008.00666.x>).
Author: Soeren Hoejsgaard <sorenh@math.aau.dk>, Steffen L. Lauritzen <lauritzen@math.ku.dk>
Maintainer: Soeren Hoejsgaard <sorenh@math.aau.dk>

Diff between gRc versions 0.4.4 dated 2021-04-03 and 0.4.5 dated 2023-04-30

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 man/generating-class.Rd |    4 ++--
 man/join-split.Rd       |   10 +++++-----
 man/rcox.Rd             |   31 +++++++++++++++++--------------
 man/set-op.Rd           |    2 +-
 man/step.Rd             |    4 ++--
 man/update-doc.Rd       |   14 +++++++-------
 src/RcppExports.cpp     |    5 +++++
 src/init.c              |    2 +-
 19 files changed, 101 insertions(+), 96 deletions(-)

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Package MissingHandle updated to version 0.1.1 with previous version 0.1.0 dated 2023-04-21

Title: Handles Missing Dates and Data and Converts into Weekly and Monthly from Daily
Description: Many times, you will not find data for all dates. After first January, 2011 you may have next data on 20th January, 2011 and so on. Also available dates may have zero values. Try to gather all such kinds of data in different excel sheets of a single excel file. Every sheet will contain two columns (1st one is dates and second one is the data). After loading all the sheets into different elements of a list, using this you can fill the gaps for all the sheets and mark all the corresponding values as zeros. Here I am talking about daily data. Finally, it will combine all the filled results into one data frame (first column is date and other columns will be corresponding values of your sheets) and give one combined data frame. Number of columns in the data frame will be number of sheets plus one. Then imputation will be done. Daily to monthly and weekly conversion is also possible. More details can be found in Garai and others (2023) <doi:10.13140/RG.2.2.11977.42087>.
Author: Mr. Sandip Garai [aut, cre]
Maintainer: Mr. Sandip Garai <sandipnicksandy@gmail.com>

Diff between MissingHandle versions 0.1.0 dated 2023-04-21 and 0.1.1 dated 2023-04-30

 DESCRIPTION               |   12 +-
 MD5                       |   13 +-
 NAMESPACE                 |    1 
 R/missing_handle.R        |  219 +++++++++++++++++++++++++++++++++++++++++++---
 man/clean_and_combine.Rd  |   27 +++++
 man/impute_combined.Rd    |    4 
 man/monthly_from_daily.Rd |only
 man/weekly_from_daily.Rd  |    4 
 8 files changed, 246 insertions(+), 34 deletions(-)

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