Title: Named Capture to Data Tables
Description: User-friendly functions for extracting a data
table (row for each match, column for each group)
from non-tabular text data using regular expressions,
and for melting columns that match a regular expression.
Patterns are defined using a readable syntax
that makes it easy to build complex patterns
in terms of simpler, re-usable sub-patterns.
Named R arguments are translated to column names
in the output; capture groups without names are used
internally in order to provide a standard interface
to three regular expression C libraries (PCRE, RE2, ICU).
Output can also include numeric columns via
user-specified type conversion functions.
Author: Toby Dylan Hocking
Maintainer: Toby Dylan Hocking <toby.hocking@r-project.org>
Diff between nc versions 2020.8.6 dated 2020-08-10 and 2023.5.1 dated 2023-05-01
nc-2020.8.6/nc/R/capture_df_names.R |only nc-2020.8.6/nc/man/capture_df_names.Rd |only nc-2023.5.1/nc/DESCRIPTION | 15 nc-2023.5.1/nc/MD5 | 191 nc-2023.5.1/nc/NAMESPACE | 28 nc-2023.5.1/nc/NEWS | 378 - nc-2023.5.1/nc/R/alternatives.R | 223 nc-2023.5.1/nc/R/apply_type_funs.R | 123 nc-2023.5.1/nc/R/capture_all_str.R | 883 +- nc-2023.5.1/nc/R/capture_first_df.R | 297 nc-2023.5.1/nc/R/capture_first_glob.R |only nc-2023.5.1/nc/R/capture_first_vec.R | 245 nc-2023.5.1/nc/R/capture_longer_spec.R |only nc-2023.5.1/nc/R/capture_melt_multiple.R | 405 - nc-2023.5.1/nc/R/capture_melt_single.R | 275 nc-2023.5.1/nc/R/check_names.R |only nc-2023.5.1/nc/R/field.R | 198 nc-2023.5.1/nc/R/group.R | 118 nc-2023.5.1/nc/R/measure.R |only nc-2023.5.1/nc/R/only_captures.R | 18 nc-2023.5.1/nc/R/quantifier.R | 130 nc-2023.5.1/nc/R/stop_for.R | 103 nc-2023.5.1/nc/R/try.R | 21 nc-2023.5.1/nc/R/var_args_list.R | 257 nc-2023.5.1/nc/build/vignette.rds |binary nc-2023.5.1/nc/inst/doc/v0-overview.R |only nc-2023.5.1/nc/inst/doc/v0-overview.Rmd |only nc-2023.5.1/nc/inst/doc/v0-overview.html |only nc-2023.5.1/nc/inst/doc/v1-capture-first.R | 421 - 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nc-2023.5.1/nc/inst/extdata/vignette.Rmd | 460 - nc-2023.5.1/nc/inst/extdata/vignette.Rnw | 794 +- nc-2023.5.1/nc/inst/extdata/vignettes |only nc-2023.5.1/nc/inst/test_engines.R | 38 nc-2023.5.1/nc/man/alternatives.Rd | 92 nc-2023.5.1/nc/man/alternatives_with_shared_groups.Rd |only nc-2023.5.1/nc/man/altlist.Rd |only nc-2023.5.1/nc/man/apply_type_funs.Rd | 47 nc-2023.5.1/nc/man/capture_all_str.Rd | 818 +- nc-2023.5.1/nc/man/capture_first_df.Rd | 222 nc-2023.5.1/nc/man/capture_first_glob.Rd |only nc-2023.5.1/nc/man/capture_first_vec.Rd | 181 nc-2023.5.1/nc/man/capture_longer_spec.Rd |only nc-2023.5.1/nc/man/capture_melt_multiple.Rd | 265 nc-2023.5.1/nc/man/capture_melt_single.Rd | 224 nc-2023.5.1/nc/man/check_df_names.Rd |only nc-2023.5.1/nc/man/check_names.Rd |only nc-2023.5.1/nc/man/collapse_some.Rd |only nc-2023.5.1/nc/man/field.Rd | 204 nc-2023.5.1/nc/man/group.Rd | 128 nc-2023.5.1/nc/man/measure.Rd |only nc-2023.5.1/nc/man/measure_multiple.Rd |only nc-2023.5.1/nc/man/measure_single.Rd |only nc-2023.5.1/nc/man/melt_list.Rd |only nc-2023.5.1/nc/man/only_captures.Rd | 44 nc-2023.5.1/nc/man/quantifier.Rd | 124 nc-2023.5.1/nc/man/stop_for_capture_same_as_id.Rd | 42 nc-2023.5.1/nc/man/stop_for_engine.Rd | 34 nc-2023.5.1/nc/man/stop_for_subject.Rd | 42 nc-2023.5.1/nc/man/subject_var_args.Rd | 34 nc-2023.5.1/nc/man/try_or_stop_print_pattern.Rd | 50 nc-2023.5.1/nc/man/var_args_list.Rd | 84 nc-2023.5.1/nc/po |only nc-2023.5.1/nc/tests/testthat.R | 2 nc-2023.5.1/nc/tests/testthat/test-CRAN-all.R | 242 nc-2023.5.1/nc/tests/testthat/test-CRAN-alternatives.R | 208 nc-2023.5.1/nc/tests/testthat/test-CRAN-df.R | 654 - nc-2023.5.1/nc/tests/testthat/test-CRAN-dt.R | 94 nc-2023.5.1/nc/tests/testthat/test-CRAN-errors.R | 280 nc-2023.5.1/nc/tests/testthat/test-CRAN-field.R | 72 nc-2023.5.1/nc/tests/testthat/test-CRAN-glob.R |only nc-2023.5.1/nc/tests/testthat/test-CRAN-group.R | 56 nc-2023.5.1/nc/tests/testthat/test-CRAN-longer.R |only nc-2023.5.1/nc/tests/testthat/test-CRAN-measure.R |only nc-2023.5.1/nc/tests/testthat/test-CRAN-melt.R | 240 nc-2023.5.1/nc/tests/testthat/test-CRAN-multiple.R | 736 +- nc-2023.5.1/nc/tests/testthat/test-CRAN-quantifier.R | 178 nc-2023.5.1/nc/tests/testthat/test-CRAN-subject.R | 98 nc-2023.5.1/nc/tests/testthat/test-CRAN-vec.R | 611 - nc-2023.5.1/nc/vignettes/v0-overview.Rmd |only nc-2023.5.1/nc/vignettes/v1-capture-first.Rmd | 830 +- nc-2023.5.1/nc/vignettes/v2-capture-all.Rmd | 508 - nc-2023.5.1/nc/vignettes/v3-capture-melt.Rmd | 596 - nc-2023.5.1/nc/vignettes/v4-comparisons.Rmd | 1346 +-- nc-2023.5.1/nc/vignettes/v5-helpers.Rmd |only nc-2023.5.1/nc/vignettes/v6-engines.Rmd |only 111 files changed, 15237 insertions(+), 14960 deletions(-)
Title: Functions for Statistics Classes at Carleton College
Description: Includes commands for bootstrapping and permutation tests, a
command for created grouped bar plots, and a demo of the
quantile-normal plot for data drawn from different distributions.
Author: Laura Chihara [aut],
Adam Loy [aut, cre]
Maintainer: Adam Loy <aloy@carleton.edu>
Diff between CarletonStats versions 2.0 dated 2018-08-08 and 2.1 dated 2023-05-01
DESCRIPTION | 30 ++++-- MD5 | 62 ++++++++----- NAMESPACE | 10 ++ NEWS.md |only R/CarletonStats-package.R |only R/Data.R | 194 +++++++++++++++++++++---------------------- R/boot.R | 128 ++++++++++++++-------------- R/bootCor.R | 104 +++++++++++------------ R/bootPaired.R | 102 +++++++++++----------- R/bootSlope.R |only R/bootSlope.default.R |only R/bootSlope.formula.R |only R/groupedBar.R | 100 +++++++++++----------- R/permTest.R | 114 ++++++++++++------------- R/permTest.formula.R | 52 +++++------ R/permTestAnova.R |only R/permTestAnova.default.R |only R/permTestAnova.formula.R |only R/permTestCor.R | 110 ++++++++++++------------ R/permTestPaired.R | 104 +++++++++++------------ R/permTestSlope.R |only R/permTestSlope.default.R |only R/permTestSlope.formula.R |only README.md |only man/CarletonStats-package.Rd |only man/Icecream.Rd | 6 - man/Milkshakes.Rd | 6 - man/boot.Rd | 28 +++--- man/bootCor.Rd | 29 ++++-- man/bootPaired.Rd | 24 +++-- man/bootSlope.Rd |only man/groupedBar.Rd | 22 +++- man/permTest.Rd | 22 +++- man/permTestAnova.Rd |only man/permTestCor.Rd | 24 +++-- man/permTestPaired.Rd | 25 +++-- man/permTestSlope.Rd |only man/qqPlotDemo.Rd | 15 ++- man/states03.Rd | 8 + man/stemPlot.Rd | 9 - 40 files changed, 717 insertions(+), 611 deletions(-)
Title: Allelic Series Test
Description: Implementation of gene-level rare variant association tests targeting allelic series: genes where increasingly deleterious mutations have increasingly large phenotypic effects. The COding-variant Allelic Series Test (COAST) operates on the benign missense variants (BMVs), deleterious missense variants (DMVs), and protein truncating variants (PTVs) within a gene. COAST uses a set of adjustable weights that tailor the test towards rejecting the null hypothesis for genes where the average magnitude of effect increases monotonically from BMVs to DMVs to PTVs. See McCaw ZR, Somineni H, Bereket M, Klein C, Karaletsos T, Casale FP, Koller D, Soare TW. (2022) "An allelic series rare variant association test for candidate gene discovery" <doi:10.1101/2022.12.23.521658>.
Author: Zachary McCaw [aut, cre] ,
Christoph Klein [ctb] ,
insitro [cph]
Maintainer: Zachary McCaw <zmccaw@insitro.com>
Diff between AllelicSeries versions 0.0.2.2 dated 2023-01-13 and 0.0.3.0 dated 2023-05-01
DESCRIPTION | 6 - MD5 | 48 ++++---- R/RcppExports.R | 22 ++++ R/allelic_series_test.R | 35 ++---- R/generate_data.R | 187 +++++++++++++++++++++++++++++----- R/utilities.R | 66 +++++++++--- inst/doc/coast.R | 9 + inst/doc/coast.Rmd | 14 ++ inst/doc/coast.html | 51 +++++---- man/ASBT.Rd | 8 - man/AllelicSeries-help.Rd | 2 man/COAST.Rd | 4 man/DGP.Rd | 37 +++++- man/FilterGenos.Rd |only man/GenAnno.Rd | 4 man/GenPheno.Rd | 6 + man/ResidVar.Rd |only man/Score.Rd |only src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 28 +++++ src/lm.cpp | 8 + src/score.cpp |only tests/testthat/test-allelic_series.R | 42 ------- tests/testthat/test-binary.R |only tests/testthat/test-data_generation.R | 131 +++++++++++++++++++++++ tests/testthat/test-score_test.R |only vignettes/coast.Rmd | 14 ++ 28 files changed, 560 insertions(+), 164 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel, Khanh Nguyen , Terry Leitch
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.17 dated 2022-10-25 and 0.4.18 dated 2023-05-01
ChangeLog | 51 ++++++++++++++++++++ DESCRIPTION | 8 +-- MD5 | 34 ++++++------- R/RcppExports.R | 2 R/arrays.R | 43 ++++++++++++---- configure | 25 +++++++++ configure.ac | 23 +++++++++ data/tsQuotes.RData |binary data/vcube.RData |binary demo/OptionSurfaces.R | 41 +++++++++------- inst/NEWS.Rd | 14 +++++ inst/tinytest/test_dates.R | 4 - src/Makevars.win | 15 +---- src/bonds.cpp | 114 --------------------------------------------- src/sabr.cpp | 12 +++- src/utils.cpp | 105 ++++++++++++++++++----------------------- src/vanilla.cpp | 7 ++ tools/winlibs.R | 18 +------ 18 files changed, 261 insertions(+), 255 deletions(-)
Title: Functions to Replicate the Center for Disease Control and
Prevention's 'LTAS' Software in R
Description: A suite of functions for reading in a rate file in XML format,
stratify a cohort, and calculate 'SMRs' from the stratified cohort and rate file.
Author: Stephen Bertke [aut, cre]
Maintainer: Stephen Bertke <nioshltas@cdc.gov>
Diff between LTASR versions 0.1.1 dated 2023-02-22 and 0.1.2 dated 2023-05-01
LTASR-0.1.1/LTASR/data/us_119ucod_19602020.rda |only LTASR-0.1.1/LTASR/man/us_119ucod_19602020.Rd |only LTASR-0.1.2/LTASR/DESCRIPTION | 6 LTASR-0.1.2/LTASR/MD5 | 70 ++--- LTASR-0.1.2/LTASR/NEWS.md | 7 LTASR-0.1.2/LTASR/R/checkHistory.R | 141 ++++++---- LTASR-0.1.2/LTASR/R/checkPerson.R | 209 ++++++++------- LTASR-0.1.2/LTASR/R/checkStrata.R | 2 LTASR-0.1.2/LTASR/R/data_rate.R | 6 LTASR-0.1.2/LTASR/R/get_table.R | 17 + LTASR-0.1.2/LTASR/R/get_table_history.R | 76 ++++- LTASR-0.1.2/LTASR/R/get_table_history_est.R | 39 +- LTASR-0.1.2/LTASR/R/mapDeaths.R | 4 LTASR-0.1.2/LTASR/R/parseRate.R | 328 ++++++++++++------------- LTASR-0.1.2/LTASR/R/smr_custom.R | 2 LTASR-0.1.2/LTASR/R/smr_major.R | 4 LTASR-0.1.2/LTASR/R/smr_minor.R | 4 LTASR-0.1.2/LTASR/data/us_119ucod_19602021.rda |only LTASR-0.1.2/LTASR/inst/doc/BasicStrata.Rmd | 328 ++++++++++++------------- LTASR-0.1.2/LTASR/inst/doc/BasicStrata.html | 4 LTASR-0.1.2/LTASR/inst/doc/HistFile.R | 4 LTASR-0.1.2/LTASR/inst/doc/HistFile.Rmd | 114 ++++---- LTASR-0.1.2/LTASR/inst/doc/HistFile.html | 12 LTASR-0.1.2/LTASR/inst/doc/SMRbyStrata.R | 10 LTASR-0.1.2/LTASR/inst/doc/SMRbyStrata.Rmd | 10 LTASR-0.1.2/LTASR/inst/doc/SMRbyStrata.html | 10 LTASR-0.1.2/LTASR/man/checkStrata.Rd | 2 LTASR-0.1.2/LTASR/man/get_table.Rd | 4 LTASR-0.1.2/LTASR/man/get_table_history.Rd | 4 LTASR-0.1.2/LTASR/man/get_table_history_est.Rd | 4 LTASR-0.1.2/LTASR/man/mapDeaths.Rd | 4 LTASR-0.1.2/LTASR/man/smr_custom.Rd | 2 LTASR-0.1.2/LTASR/man/smr_major.Rd | 4 LTASR-0.1.2/LTASR/man/smr_minor.Rd | 4 LTASR-0.1.2/LTASR/man/us_119ucod_19602021.Rd |only LTASR-0.1.2/LTASR/vignettes/BasicStrata.Rmd | 328 ++++++++++++------------- LTASR-0.1.2/LTASR/vignettes/HistFile.Rmd | 114 ++++---- LTASR-0.1.2/LTASR/vignettes/SMRbyStrata.Rmd | 10 38 files changed, 1001 insertions(+), 886 deletions(-)
Title: Wrapper for the Project 'VoteSmart' API
Description: An R interface to the Project 'VoteSmart'<https://justfacts.votesmart.org/> API.
Author: Deck Technologies [cph, fnd],
Amanda Dobbyn [aut, cre],
Max Wood [aut],
Alyssa Frazee [aut]
Maintainer: Amanda Dobbyn <amanda@deck.tools>
Diff between votesmart versions 0.1.0 dated 2021-02-22 and 0.1.2 dated 2023-05-01
DESCRIPTION | 19 MD5 | 91 - NAMESPACE | 1 R/candidates_get_by_lastname.R | 26 R/candidates_get_by_levenshtein.R | 26 R/candidates_get_by_office_state.R | 42 R/election_get_election_by_year_state.R | 26 R/globals.R | 1 R/measure_get_measures.R | 19 R/measure_get_measures_by_year_state.R | 18 R/office_get_offices_by_level.R | 2 R/rating_get_candidate_ratings.R | 26 R/rating_get_categories.R | 6 R/rating_get_sig.R | 18 R/rating_get_sig_list.R | 24 R/request.R | 10 R/utils.R | 46 R/votes_get_by_official.R | 28 README.md | 117 +- inst/doc/votesmart.R | 84 - inst/doc/votesmart.Rmd | 84 - inst/doc/votesmart.html | 785 +++++++------- man/candidates_get_by_office_state.Rd | 2 man/measure_get_measures.Rd | 1 man/rating_get_sig.Rd | 1 man/rating_get_sig_list.Rd | 1 man/votesmart-package.Rd | 2 tests/fixtures |only tests/testthat/helper-vcr.R |only tests/testthat/test-candidates_get_by_lastname.R | 38 tests/testthat/test-candidates_get_by_office_state.R | 28 tests/testthat/test-election_get_election_by_year_state.R | 28 tests/testthat/test-measure_get_measures.R | 4 tests/testthat/test-measure_get_measures_by_year_state.R | 16 tests/testthat/test-office_get_offices_by_level.R | 10 tests/testthat/test-rating_get_candidate_ratings.R | 24 tests/testthat/test-rating_get_categories.R | 10 tests/testthat/test-rating_get_sig_list.R | 30 tests/testthat/test-utils.R |only tests/testthat/test-votes_get_by_official.R | 20 vignettes/votesmart.Rmd | 84 - 41 files changed, 940 insertions(+), 858 deletions(-)
Title: Tidy Structural Equation Modeling
Description: A tidy workflow for generating, estimating, reporting,
and plotting structural equation models using 'lavaan', 'OpenMx', or
'Mplus'. Throughout this workflow, elements of syntax, results, and graphs
are represented as 'tidy' data, making them easy to customize.
Author: Caspar J. van Lissa [aut, cre]
,
Mauricio Garnier-Villarreal [ctb]
Maintainer: Caspar J. van Lissa <c.j.vanlissa@tilburguniversity.edu>
Diff between tidySEM versions 0.2.3 dated 2022-04-14 and 0.2.4 dated 2023-05-01
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Title: 'Ready Signal' API Wrapper
Description: A simple way to interact with the 'Ready Signal' API without
leaving your 'R' environment. Discover features, manage signals, and retrieve data easily.
View the full API documentation at <https://readysignal.com/ready-signal-api-documentation>.
Author: Davis Busteed [aut, cre]
Maintainer: Davis Busteed <davis.busteed@rxa.io>
Diff between readysignal versions 0.0.7 dated 2023-02-24 and 0.0.8 dated 2023-05-01
DESCRIPTION | 6 ++-- MD5 | 15 ++++++------ R/readysignal.R | 17 +++++++++---- README.md | 10 +++++--- man/auto_discover.Rd | 11 +++++--- tests/testthat/data/country.csv | 2 - tests/testthat/data/day.csv |only tests/testthat/data/states.csv | 2 - tests/testthat/test-3-auto-discovery.R | 41 +++++++++++++++++++++++++++++---- 9 files changed, 76 insertions(+), 28 deletions(-)
Title: Systematic Conservation Prioritization in R
Description: Systematic conservation prioritization using mixed integer linear
programming (MILP). It provides a flexible interface for building and
solving conservation planning problems. Once built, conservation planning
problems can be solved using a variety of commercial and open-source exact
algorithm solvers. By using exact algorithm solvers, solutions can be
generated that are guaranteed to be optimal (or within a pre-specified
optimality gap). Furthermore, conservation problems can be constructed to
optimize the spatial allocation of different management actions or zones,
meaning that conservation practitioners can identify solutions that benefit
multiple stakeholders. To solve large-scale or complex conservation
planning problems, users should install the Gurobi optimization software
(available from <https://www.gurobi.com/>) and the 'gurobi' R package (see
Gurobi Installation Guide vignette for details). Users can also install the
IBM CPLEX software (<https://www.ibm.com/products [...truncated...]
Author: Jeffrey O Hanson [aut] ,
Richard Schuster [aut, cre] ,
Nina Morrell [aut],
Matthew Strimas-Mackey [aut] ,
Brandon P M Edwards [aut] ,
Matthew E Watts [aut],
Peter Arcese [aut] ,
Joseph Bennett [aut] ,
Hugh P Possingham [aut]
Maintainer: Richard Schuster <richard.schuster@glel.carleton.ca>
Diff between prioritizr versions 8.0.0 dated 2023-03-29 and 8.0.2 dated 2023-05-01
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prioritizr-8.0.2/prioritizr/vignettes/solver_benchmarks.Rmd | 72 286 files changed, 6347 insertions(+), 5798 deletions(-)
Title: Group Sequential Design with Non-Constant Effect
Description: The goal of 'gsDesign2' is to enable fixed or group sequential
design under non-proportional hazards. To enable highly flexible enrollment,
time-to-event and time-to-dropout assumptions, 'gsDesign2' offers piecewise
constant enrollment, failure rates, and dropout rates for a stratified
population. This package includes three methods for designs:
average hazard ratio, weighted logrank tests in Yung and Liu (2019)
<doi:10.1111/biom.13196>, and MaxCombo tests.
Substantial flexibility on top of what is in the 'gsDesign' package
is intended for selecting boundaries.
Author: Keaven Anderson [aut],
Yilong Zhang [aut],
Yujie Zhao [aut, cre],
Jianxiao Yang [aut],
Nan Xiao [aut],
Amin Shirazi [ctb],
Ruixue Wang [ctb],
Yi Cui [ctb],
Ping Yang [ctb],
Xin Tong Li [ctb],
Chenxiang Li [ctb],
Hongtao Zhang [ctb],
Yalin Zhu [ctb],
[...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between gsDesign2 versions 1.0.7 dated 2023-03-20 and 1.0.8 dated 2023-05-01
DESCRIPTION | 6 MD5 | 62 +-- NEWS.md | 16 R/as_gt.R | 4 R/fixed_design.R | 107 ++++- R/globals.R | 4 R/gs_design_ahr.R | 53 ++ R/gs_design_npe.R | 35 + R/gs_design_rd.R | 41 +- R/gs_design_wlr.R | 9 R/gs_power_ahr.R | 15 R/gs_power_npe.R | 19 R/gs_power_rd.R | 13 R/gs_power_wlr.R | 8 R/rmst.R | 28 + R/to_integer.R | 102 ++++- R/utility_combo.R | 3 README.md | 115 +++-- build/partial.rdb |binary inst/doc/gsDesign2.R | 4 inst/doc/gsDesign2.Rmd | 4 inst/doc/gsDesign2.html | 662 ++++++++++++++++----------------- man/gs_design_ahr.Rd | 35 + man/gs_design_npe.Rd | 16 man/gs_design_rd.Rd | 11 man/gs_design_wlr.Rd | 9 man/gs_power_ahr.Rd | 9 man/gs_power_npe.Rd | 10 man/gs_power_rd.Rd | 9 man/gs_power_wlr.Rd | 9 tests/testthat/test-independent-rmst.R | 9 vignettes/gsDesign2.Rmd | 4 32 files changed, 881 insertions(+), 550 deletions(-)
Title: Easily Create Production-Ready Rich Text Format (RTF) Table and
Figure
Description: Create production-ready Rich Text Format (RTF) table and figure
with flexible format.
Author: Yilong Zhang [aut, cre],
Siruo Wang [aut],
Simiao Ye [aut],
Fansen Kong [aut],
Brian Lang [aut],
Nan Xiao [ctb],
Madhusudhan Ginnaram [ctb],
Ruchitbhai Patel [ctb],
Huei-Ling Chen [ctb],
Peikun Wu [ctb],
Uday Preetham Palukuru [ctb],
Daniel Woodie [c [...truncated...]
Maintainer: Yilong Zhang <elong0527@gmail.com>
Diff between r2rtf versions 1.0.1 dated 2023-02-01 and 1.0.2 dated 2023-05-01
DESCRIPTION | 10 MD5 | 33 +- NEWS.md | 164 ++++++++---- R/as_rtf_table.R | 1 R/content_create.R | 84 ++---- R/rtf_convert_format.R | 10 R/rtf_strwidth.R | 1 README.md | 138 ++++++---- build/vignette.rds |binary inst/CITATION |only man/as_rtf_footnote.Rd | 4 man/assemble_docx.Rd | 12 man/assemble_rtf.Rd | 12 man/check_args.Rd | 2 man/rtf_read_figure.Rd | 7 tests/testthat/test-independent-testing-content_create.R | 2 tests/testthat/test-independent-testing-rtf_encode_figure.R | 1 tests/testthat/test-independent-testing-update_cellx.R | 1 18 files changed, 296 insertions(+), 186 deletions(-)
Title: Wildlife Sightability Modeling
Description: Uses logistic regression to model the probability of detection as a function of covariates.
This model is then used with observational survey data to estimate population size, while
accounting for uncertain detection. See Steinhorst and Samuel (1989).
Author: Fieberg John [aut],
Schwarz Carl James [aut, cre]
Maintainer: Schwarz Carl James <cschwarz.stat.sfu.ca@gmail.com>
Diff between SightabilityModel versions 1.5.2 dated 2023-02-17 and 1.5.3 dated 2023-05-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS.md | 4 ++++ R/Wong.est.R | 22 ++++++++++++++-------- build/vignette.rds |binary inst/doc/a-SightabilityModel.pdf |binary inst/doc/c-MoosePopR-SightabilityPopR-Demo.html | 6 +++--- 7 files changed, 31 insertions(+), 21 deletions(-)
More information about SightabilityModel at CRAN
Permanent link
Title: Apply Normalization Methods to Multiplexed Images
Description: Implements methods to normalize multiplexed imaging data, including
statistical metrics and visualizations to quantify technical variation in
this data type. Reference for methods listed here: Harris, C., Wrobel, J.,
& Vandekar, S. (2022). mxnorm: An R Package to Normalize Multiplexed Imaging
Data. Journal of Open Source Software, 7(71), 4180,
<doi:10.21105/joss.04180>.
Author: Coleman Harris [aut, cre]
Maintainer: Coleman Harris <coleman.r.harris@vanderbilt.edu>
Diff between mxnorm versions 1.0.2 dated 2022-06-01 and 1.0.3 dated 2023-05-01
DESCRIPTION | 8 MD5 | 10 R/global.R | 3 R/transform_mx_dataset.R | 4 build/vignette.rds |binary inst/doc/mxnorm-vignette.html | 1652 ++++++++++++++++++++++++++++-------------- 6 files changed, 1138 insertions(+), 539 deletions(-)
Title: Computing Comorbidity Scores
Description: Computing comorbidity indices and scores such as the weighted Charlson
score (Charlson, 1987 <doi:10.1016/0021-9681(87)90171-8>) and the Elixhauser
comorbidity score (Elixhauser, 1998 <doi:10.1097/00005650-199801000-00004>)
using ICD-9-CM or ICD-10 codes (Quan, 2005 <doi:10.1097/01.mlr.0000182534.19832.83>).
Australian and Swedish modifications of the Charlson Comorbidity Index are available
as well (Sundararajan, 2004 <doi:10.1016/j.jclinepi.2004.03.012> and Ludvigsson, 2021
<doi:10.2147/CLEP.S282475>), together with different weighting algorithms for both
the Charlson and Elixhauser comorbidity scores.
Author: Alessandro Gasparini [aut, cre]
,
Hojjat Salmasian [ctb] ,
Jonathan Williman [ctb] ,
Sing Yi Chia [ctb] ,
Edmund Teo [ctb]
Maintainer: Alessandro Gasparini <alessandro@ellessenne.xyz>
Diff between comorbidity versions 1.0.5 dated 2022-09-26 and 1.0.7 dated 2023-05-01
DESCRIPTION | 11 +-- MD5 | 20 +++--- NEWS.md | 13 ++++ R/sysdata.rda |binary README.md | 8 -- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 7 -- inst/doc/A-introduction.html | 118 ++++++++++++++++++------------------- inst/doc/B-comorbidity-scores.html | 4 - tests/testthat/test-comorbidity.R | 28 ++++---- 11 files changed, 110 insertions(+), 99 deletions(-)
Title: A Synchronized Tausworthe RNG for R and Python
Description: Generate the same random numbers in R and Python.
Author: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Maintainer: Gertjan van den Burg <gertjanvandenburg@gmail.com>
Diff between SyncRNG versions 1.3.1 dated 2022-08-11 and 1.3.2 dated 2023-05-01
DESCRIPTION | 11 ++++++----- MD5 | 6 +++--- NEWS.md | 4 ++++ src/syncrng.c | 8 ++++---- 4 files changed, 17 insertions(+), 12 deletions(-)
Title: Calculate Relevance and Significance Measures
Description: Calculates relevance and significance values for
simple models and for many types of regression models.
These are introduced in
'Stahel, Werner A.' (2021)
"Measuring Significance and Relevance instead of p-values."
<https://stat.ethz.ch/~stahel/relevance/stahel-relevance2103.pdf>.
These notions are also applied to replication studies,
as described in the manuscript
'Stahel, Werner A.' (2022)
"'Replicability': Terminology, Measuring Success, and Strategy"
available in the documentation.
Author: Werner A. Stahel
Maintainer: Werner A. Stahel <stahel@stat.math.ethz.ch>
Diff between relevance versions 1.3 dated 2021-08-10 and 2.0 dated 2023-05-01
relevance-1.3/relevance/vignettes/temp.ps |only relevance-2.0/relevance/DESCRIPTION | 17 relevance-2.0/relevance/MD5 | 53 relevance-2.0/relevance/NAMESPACE | 13 relevance-2.0/relevance/R/auxfns.R | 45 relevance-2.0/relevance/R/checkfns.R | 30 relevance-2.0/relevance/R/relevance.R | 777 ++++++---- relevance-2.0/relevance/R/replication.R |only relevance-2.0/relevance/build/partial.rdb |binary relevance-2.0/relevance/build/vignette.rds |binary relevance-2.0/relevance/data/d.osc15.rda |only relevance-2.0/relevance/data/d.osc15Onesample.rda |only relevance-2.0/relevance/inst/doc/rel-descr.R |only relevance-2.0/relevance/inst/doc/rel-descr.Rnw |only relevance-2.0/relevance/inst/doc/rel-descr.pdf |only relevance-2.0/relevance/inst/doc/relevance-descr.R | 22 relevance-2.0/relevance/inst/doc/relevance-descr.Rnw | 203 ++ relevance-2.0/relevance/inst/doc/relevance-descr.pdf |binary relevance-2.0/relevance/inst/doc/replication-termsSucStrat-withfigs.pdf |only relevance-2.0/relevance/man/d.osc15.Rd |only relevance-2.0/relevance/man/d.osc15Onesample.Rd |only relevance-2.0/relevance/man/inference.Rd | 54 relevance-2.0/relevance/man/plconfint.Rd | 57 relevance-2.0/relevance/man/plot.inference.Rd | 18 relevance-2.0/relevance/man/replication.Rd |only relevance-2.0/relevance/man/rlvClass.Rd |only relevance-2.0/relevance/man/rplClass.Rd |only relevance-2.0/relevance/man/shortenstring.Rd |only relevance-2.0/relevance/man/termtable.Rd | 3 relevance-2.0/relevance/man/twosamples.Rd | 13 relevance-2.0/relevance/vignettes/rel |only relevance-2.0/relevance/vignettes/rel-descr-concordance.tex |only relevance-2.0/relevance/vignettes/rel-descr.Rnw |only relevance-2.0/relevance/vignettes/relevance-descr-concordance.tex | 6 relevance-2.0/relevance/vignettes/relevance-descr.Rnw | 203 ++ relevance-2.0/relevance/vignettes/relevance-descr.sty | 7 36 files changed, 1115 insertions(+), 406 deletions(-)
Title: 'Rcpp' Integration for the 'mlpack' Library
Description: A fast, flexible machine learning library, written in C++, that
aims to provide fast, extensible implementations of cutting-edge
machine learning algorithms. See also Curtin et al. (2018)
<doi:10.21105/joss.00726>.
Author: Yashwant Singh Parihar [aut, ctb, cph],
Ryan Curtin [aut, ctb, cph, cre],
Dirk Eddelbuettel [aut, ctb, cph],
James Balamuta [aut, ctb, cph],
Bill March [ctb, cph],
Dongryeol Lee [ctb, cph],
Nishant Mehta [ctb, cph],
Parikshit Ram [ctb, cph],
James Cl [...truncated...]
Maintainer: Ryan Curtin <ryan@ratml.org>
Diff between mlpack versions 4.0.1 dated 2023-01-13 and 4.1.0 dated 2023-05-01
mlpack-4.0.1/mlpack/configure |only mlpack-4.0.1/mlpack/src/cereal/external/LICENSE |only mlpack-4.0.1/mlpack/src/cereal/external/rapidjson/LICENSE |only mlpack-4.0.1/mlpack/src/cereal/external/rapidjson/msinttypes/LICENSE |only mlpack-4.0.1/mlpack/src/cereal/external/rapidxml/license.txt |only mlpack-4.0.1/mlpack/src/cereal/external/rapidxml/manual.html |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/hard_tanh.hpp |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/hard_tanh_impl.hpp |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/parametric_relu.hpp |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/parametric_relu_impl.hpp |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/softmin.hpp |only mlpack-4.0.1/mlpack/src/mlpack/methods/ann/layer/not_adapted/softmin_impl.hpp |only mlpack-4.1.0/mlpack/DESCRIPTION | 32 mlpack-4.1.0/mlpack/LICENSE | 2 mlpack-4.1.0/mlpack/MD5 | 92 +- mlpack-4.1.0/mlpack/R/cf.R | 3 mlpack-4.1.0/mlpack/inst/CITATION |only mlpack-4.1.0/mlpack/man/cf.Rd | 3 mlpack-4.1.0/mlpack/src/Makevars | 1 mlpack-4.1.0/mlpack/src/Makevars.win | 2 mlpack-4.1.0/mlpack/src/cereal/external/base64.hpp | 7 mlpack-4.1.0/mlpack/src/mlpack/core.hpp | 5 mlpack-4.1.0/mlpack/src/mlpack/core/data/load_numeric_csv.hpp | 30 mlpack-4.1.0/mlpack/src/mlpack/core/data/save_impl.hpp | 14 mlpack-4.1.0/mlpack/src/mlpack/core/dists/discrete_distribution.hpp | 4 mlpack-4.1.0/mlpack/src/mlpack/core/util/gitversion.hpp | 2 mlpack-4.1.0/mlpack/src/mlpack/core/util/param.hpp | 329 ---------- mlpack-4.1.0/mlpack/src/mlpack/core/util/params_impl.hpp | 2 mlpack-4.1.0/mlpack/src/mlpack/core/util/version.hpp | 4 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/ffn_impl.hpp | 68 +- mlpack-4.1.0/mlpack/src/mlpack/methods/ann/init_rules/network_init.hpp | 2 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/convolution_impl.hpp | 4 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/grouped_convolution_impl.hpp | 4 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/hard_tanh.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/hard_tanh_impl.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/layer_types.hpp | 3 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/parametric_relu.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/parametric_relu_impl.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/serialization.hpp | 3 mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/softmin.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/layer/softmin_impl.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/ann/rnn_impl.hpp | 32 mlpack-4.1.0/mlpack/src/mlpack/methods/cf/cf.hpp | 2 mlpack-4.1.0/mlpack/src/mlpack/methods/cf/cf_main.cpp | 17 mlpack-4.1.0/mlpack/src/mlpack/methods/cf/cf_model.hpp | 4 mlpack-4.1.0/mlpack/src/mlpack/methods/cf/cf_model_impl.hpp | 47 - mlpack-4.1.0/mlpack/src/mlpack/methods/cf/decomposition_policies/block_krylov_svd_method.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/cf/decomposition_policies/decomposition_policies.hpp | 2 mlpack-4.1.0/mlpack/src/mlpack/methods/cf/decomposition_policies/quic_svd_method.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/dbscan/dbscan_impl.hpp | 88 ++ mlpack-4.1.0/mlpack/src/mlpack/methods/hmm/hmm.hpp | 5 mlpack-4.1.0/mlpack/src/mlpack/methods/preprocess/preprocess.hpp |only mlpack-4.1.0/mlpack/src/mlpack/methods/preprocess/scaling_model_impl.hpp | 16 mlpack-4.1.0/mlpack/src/mlpack/methods/quic_svd/quic_svd.hpp | 49 + mlpack-4.1.0/mlpack/src/mlpack/methods/quic_svd/quic_svd_impl.hpp | 26 mlpack-4.1.0/mlpack/src/mlpack/methods/randomized_svd/randomized_svd.hpp | 78 -- mlpack-4.1.0/mlpack/src/mlpack/methods/randomized_svd/randomized_svd_impl.hpp | 85 ++ mlpack-4.1.0/mlpack/src/mlpack/methods/svdplusplus/svdplusplus.hpp | 2 58 files changed, 480 insertions(+), 589 deletions(-)
Title: Differential Expression Enrichment Tool
Description: Abstract of Manuscript. Differential gene expression analysis using RNA sequencing (RNA-seq) data is a standard approach for making biological discoveries. Ongoing large-scale efforts to process and normalize publicly available gene expression data enable rapid and systematic reanalysis. While several powerful tools systematically process RNA-seq data, enabling their reanalysis, few resources systematically recompute differentially expressed genes (DEGs) generated from individual studies. We developed a robust differential expression analysis pipeline to recompute 3162 human DEG lists from The Cancer Genome Atlas, Genotype-Tissue Expression Consortium, and 142 studies within the Sequence Read Archive. After measuring the accuracy of the recomputed DEG lists, we built the Differential Expression Enrichment Tool (DEET), which enables users to interact with the recomputed DEG lists. DEET, available through CRAN and RShiny, systematically queries which of the recomputed DEG lists share sim [...truncated...]
Author: Dustin Sokolowski [aut, cre],
Jedid Ahn [aut],
Lauren Erdman [aut],
Kai Ellis [aut],
Huayun Hou [aut],
Anna Goldenberg [aut],
Michael Wilson [aut]
Maintainer: Dustin Sokolowski <dustin.sokolowski@sickkids.ca>
Diff between DEET versions 1.0.8 dated 2023-01-05 and 1.0.10 dated 2023-05-01
DESCRIPTION | 8 MD5 | 12 R/DEET_enrich.R | 30 + README.md | 6 build/vignette.rds |binary inst/doc/DEET_vignette.html | 775 ++++++++++++++++++++++++++++++-------------- man/DEET_enrich.Rd | 13 7 files changed, 583 insertions(+), 261 deletions(-)
Title: Cache R Objects with Automatic Pruning
Description: Key-value stores with automatic pruning. Caches can limit
either their total size or the age of the oldest object (or both),
automatically pruning objects to maintain the constraints.
Author: Winston Chang [aut, cre],
RStudio [cph, fnd]
Maintainer: Winston Chang <winston@rstudio.com>
Diff between cachem versions 1.0.7 dated 2023-02-24 and 1.0.8 dated 2023-05-01
DESCRIPTION | 10 ++++----- MD5 | 10 ++++----- NEWS.md | 4 +++ R/cache-mem.R | 44 ++++++++++++++++++++++++++-------------- README.md | 4 +-- tests/testthat/test-cache-mem.R | 13 +++++++++++ 6 files changed, 58 insertions(+), 27 deletions(-)
Title: Applies Multiclass AdaBoost.M1, SAMME and Bagging
Description: It implements Freund and Schapire's Adaboost.M1 algorithm and Breiman's Bagging
algorithm using classification trees as individual classifiers. Once these classifiers have been
trained, they can be used to predict on new data. Also, cross validation estimation of the error can
be done. Since version 2.0 the function margins() is available to calculate the margins for these
classifiers. Also a higher flexibility is achieved giving access to the rpart.control() argument
of 'rpart'. Four important new features were introduced on version 3.0, AdaBoost-SAMME (Zhu
et al., 2009) is implemented and a new function errorevol() shows the error of the ensembles as
a function of the number of iterations. In addition, the ensembles can be pruned using the option
'newmfinal' in the predict.bagging() and predict.boosting() functions and the posterior probability of
each class for observations can be obtained. Version 3.1 modifies the relative importance measure
to take into account the gain of the Gin [...truncated...]
Author: Alfaro, Esteban; Gamez, Matias and Garcia, Noelia; with contributions from Li Guo
Maintainer: Esteban Alfaro <Esteban.Alfaro@uclm.es>
Diff between adabag versions 4.2 dated 2018-01-19 and 4.3 dated 2023-05-01
adabag-4.2/adabag/R/adabag-internal.R |only adabag-4.3/adabag/DESCRIPTION | 9 - adabag-4.3/adabag/MD5 | 15 +- adabag-4.3/adabag/R/errorevol.R | 11 - adabag-4.3/adabag/R/importanceplot.R | 7 - adabag-4.3/adabag/R/plot.errorevol.R | 12 + adabag-4.3/adabag/R/plot.margins.R | 18 +- adabag-4.3/adabag/inst/CITATION | 12 - adabag-4.3/adabag/man/boosting.Rd | 220 +++++++++++++++++----------------- 9 files changed, 155 insertions(+), 149 deletions(-)
Title: Find Differences Between R Objects
Description: Compare complex R objects and reveal the key differences.
Designed particularly for use in testing packages where being able to
quickly isolate key differences makes understanding test failures much
easier.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between waldo versions 0.4.0 dated 2022-03-16 and 0.5.0 dated 2023-05-01
DESCRIPTION | 8 - MD5 | 58 ++++++------- NAMESPACE | 1 NEWS.md | 22 +++++ R/compare-opts.R | 4 R/compare-value.R | 50 ++++++++++- R/compare.R | 12 ++ R/diff.R | 75 ++++++++++------- R/num_equal.R | 3 R/proxy.R | 11 ++ R/waldo-package.R | 2 README.md | 139 +++++++++++++++----------------- man/compare.Rd | 7 + man/compare_proxy.Rd | 2 man/figures/README/unnamed-chunk-10.svg | 2 man/figures/README/unnamed-chunk-11.svg | 2 man/figures/README/unnamed-chunk-12.svg | 2 man/figures/README/unnamed-chunk-2.svg | 2 man/figures/README/unnamed-chunk-3.svg | 2 man/figures/README/unnamed-chunk-4.svg | 2 man/figures/README/unnamed-chunk-5.svg | 2 man/figures/README/unnamed-chunk-6.svg | 2 man/figures/README/unnamed-chunk-7.svg | 2 man/figures/README/unnamed-chunk-8.svg | 2 tests/testthat/_snaps/compare-value.md | 61 +++++++++++++- tests/testthat/_snaps/compare.md | 18 ++++ tests/testthat/test-compare-value.R | 31 +++++++ tests/testthat/test-compare.R | 17 +++ tests/testthat/test-num_equal.R | 6 + tests/testthat/test-proxy.R | 9 ++ 30 files changed, 399 insertions(+), 157 deletions(-)
Title: Calculate and Map Distances Between Phylogenetic Trees
Description: Implements measures of tree similarity, including
information-based generalized Robinson-Foulds distances
(Phylogenetic Information Distance, Clustering Information Distance,
Matching Split Information Distance; Smith 2020)
<doi:10.1093/bioinformatics/btaa614>;
Jaccard-Robinson-Foulds distances (Bocker et al. 2013)
<doi:10.1007/978-3-642-40453-5_13>,
including the Nye et al. (2006) metric <doi:10.1093/bioinformatics/bti720>;
the Matching Split Distance (Bogdanowicz & Giaro 2012)
<doi:10.1109/TCBB.2011.48>;
Maximum Agreement Subtree distances;
the Kendall-Colijn (2016) distance <doi:10.1093/molbev/msw124>, and the
Nearest Neighbour Interchange (NNI) distance, approximated per Li et al.
(1996) <doi:10.1007/3-540-61332-3_168>.
Includes tools for visualizing mappings of tree space (Smith 2022)
<doi:10.1093/sysbio/syab100>,
for calculating the median of sets of trees,
and for computing the information content of trees and splits.
Author: Martin R. Smith [aut, cre, cph, prg]
,
Roy Jonker [prg, cph],
Yong Yang [ctb, cph],
Yi Cao [ctb, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeDist versions 2.6.0 dated 2023-02-20 and 2.6.1 dated 2023-05-01
DESCRIPTION | 17 MD5 | 40 - NEWS.md | 11 R/parallel.R | 7 R/plot.R | 9 R/tree_distance_nye.R | 2 R/tree_distance_rf.R | 6 R/zzz.R | 2 build/partial.rdb |binary inst/WORDLIST | 1 inst/doc/Using-TreeDist.html | 6 inst/doc/landscapes.R | 22 - inst/doc/landscapes.Rmd | 22 - inst/doc/landscapes.html | 32 - man/MSTSegments.Rd | 9 man/NyeSimilarity.Rd | 2 man/Robinson-Foulds.Rd | 6 man/StartParallel.Rd | 4 tests/testthat/_snaps/plot/mst-example-plot.svg | 518 ++++++++++++------------ tests/testthat/test-plot.R | 9 vignettes/landscapes.Rmd | 22 - 21 files changed, 405 insertions(+), 342 deletions(-)
Title: Easily Install and Load the 'Tidymodels' Packages
Description: The tidy modeling "verse" is a collection of packages for
modeling and statistical analysis that share the underlying design
philosophy, grammar, and data structures of the tidyverse.
Author: Max Kuhn [aut, cre] ,
Hadley Wickham [aut],
Posit Software, PBC [cph, fnd]
Maintainer: Max Kuhn <max@posit.co>
Diff between tidymodels versions 1.0.0 dated 2022-07-13 and 1.1.0 dated 2023-05-01
DESCRIPTION | 32 ++++----- LICENSE | 2 MD5 | 23 +++--- NAMESPACE | 1 NEWS.md | 8 ++ R/emails.R | 2 R/imports.R | 1 R/tidymodels_prefer.R | 36 +++++++++- README.md |only inst/doc/Tags.html | 158 +++++++++++++++++++++++----------------------- man/figures/logo.png |binary man/tidymodels-package.Rd | 6 - man/tidymodels_prefer.Rd | 6 + 13 files changed, 161 insertions(+), 114 deletions(-)
Title: Seeded Sequential LDA for Topic Modeling
Description: Seeded Sequential LDA can classify sentences of texts into pre-define topics with a small number of seed words (Watanabe & Baturo, forthcoming).
Implements Seeded LDA (Lu et al., 2010) <doi:10.1109/ICDMW.2011.125> and Sequential LDA (Du et al., 2012) <doi:10.1007/s10115-011-0425-1> algorithms based on the GibbsLDA++ library.
Author: Kohei Watanabe [aut, cre, cph],
Phan Xuan-Hieu [aut, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between seededlda versions 0.9.0 dated 2023-04-30 and 0.9.1 dated 2023-05-01
DESCRIPTION | 10 +++++----- MD5 | 22 +++++++++++----------- R/lda.R | 7 +++---- R/seededlda.R | 7 +++---- R/seqlda.R | 13 ++++++++----- R/utils.R | 20 +++++++++++--------- man/divergence.Rd | 10 +++++----- man/textmodel_lda.Rd | 7 +++---- man/textmodel_seededlda.Rd | 9 ++++----- man/textmodel_seqlda.Rd | 15 +++++++++------ tests/testthat/test-textmodel_lda.R | 1 + tests/testthat/test-utils.R | 14 ++++++++++++++ 12 files changed, 77 insertions(+), 58 deletions(-)
Title: Fast Statistical Hypothesis Tests on Rows and Columns of
Matrices
Description: Functions to perform fast statistical hypothesis tests on rows/columns of matrices.
The main goals are: 1) speed via vectorization, 2) output that is detailed and easy to use,
3) compatibility with tests implemented in R (like those available in the 'stats' package).
Author: Karolis Koncevicius [aut, cre]
Maintainer: Karolis Koncevicius <karolis.koncevicius@gmail.com>
Diff between matrixTests versions 0.2.1 dated 2023-04-20 and 0.2.2 dated 2023-05-01
matrixTests-0.2.1/matrixTests/tests/cor_pearson_corectness.r |only matrixTests-0.2.1/matrixTests/tests/cosinor_corectness.r |only matrixTests-0.2.2/matrixTests/DESCRIPTION | 6 +- matrixTests-0.2.2/matrixTests/MD5 | 24 ++++++---- matrixTests-0.2.2/matrixTests/NAMESPACE | 2 matrixTests-0.2.2/matrixTests/NEWS | 8 ++- matrixTests-0.2.2/matrixTests/R/kolmogorov.R |only matrixTests-0.2.2/matrixTests/R/levene.R | 2 matrixTests-0.2.2/matrixTests/R/wilcox.R | 2 matrixTests-0.2.2/matrixTests/man/kolmogorov.Rd |only matrixTests-0.2.2/matrixTests/man/levene.Rd | 2 matrixTests-0.2.2/matrixTests/man/wilcoxon.Rd | 2 matrixTests-0.2.2/matrixTests/tests/cor_pearson_correctness.r |only matrixTests-0.2.2/matrixTests/tests/cosinor_correctness.r |only matrixTests-0.2.2/matrixTests/tests/kolmogorovsmirnov_twosample_behavioiur.r |only matrixTests-0.2.2/matrixTests/tests/kolmogorovsmirnov_twosample_correctness.r |only matrixTests-0.2.2/matrixTests/tests/kolmogorovsmirnov_twosample_errors.r |only matrixTests-0.2.2/matrixTests/tests/kolmogorovsmirnov_twosample_warnings.r |only 18 files changed, 31 insertions(+), 17 deletions(-)
Title: Mean and Covariance Matrix Estimation under Heavy Tails
Description: Robust estimation methods for the mean vector, scatter matrix,
and covariance matrix (if it exists) from data (possibly containing NAs)
under multivariate heavy-tailed distributions such as angular Gaussian
(via Tyler's method), Cauchy, and Student's t distributions. Additionally,
a factor model structure can be specified for the covariance matrix. The
latest revision also includes the multivariate skewed t distribution.
The package is based on the papers: Sun, Babu, and Palomar (2014);
Sun, Babu, and Palomar (2015); Liu and Rubin (1995);
Zhou, Liu, Kumar, and Palomar (2019); Pascal, Ollila, and Palomar (2021).
Author: Daniel P. Palomar [cre, aut],
Rui Zhou [aut],
Xiwen Wang [aut],
Frederic Pascal [ctb],
Esa Ollila [ctb]
Maintainer: Daniel P. Palomar <daniel.p.palomar@gmail.com>
Diff between fitHeavyTail versions 0.1.4 dated 2022-05-11 and 0.2.0 dated 2023-05-01
fitHeavyTail-0.1.4/fitHeavyTail/man/figures/README-ellipses-1.png |only fitHeavyTail-0.2.0/fitHeavyTail/DESCRIPTION | 34 fitHeavyTail-0.2.0/fitHeavyTail/MD5 | 49 fitHeavyTail-0.2.0/fitHeavyTail/NAMESPACE | 3 fitHeavyTail-0.2.0/fitHeavyTail/NEWS.md | 17 fitHeavyTail-0.2.0/fitHeavyTail/R/fitHeavyTail-package.R | 20 fitHeavyTail-0.2.0/fitHeavyTail/R/fit_TylerCauchy.R | 103 - fitHeavyTail-0.2.0/fitHeavyTail/R/fit_mvt.R | 341 +-- fitHeavyTail-0.2.0/fitHeavyTail/R/nu_OPP_estimator.R |only fitHeavyTail-0.2.0/fitHeavyTail/R/nu_POP_estimator.R |only fitHeavyTail-0.2.0/fitHeavyTail/R/nu_nonparametric_estimation.R |only fitHeavyTail-0.2.0/fitHeavyTail/README.md | 46 fitHeavyTail-0.2.0/fitHeavyTail/build/vignette.rds |binary fitHeavyTail-0.2.0/fitHeavyTail/inst/CITATION | 42 fitHeavyTail-0.2.0/fitHeavyTail/inst/doc/CovarianceEstimationHeavyTail.html | 1005 +++++++--- fitHeavyTail-0.2.0/fitHeavyTail/man/figures/README-scatter-plots-1.png |only fitHeavyTail-0.2.0/fitHeavyTail/man/fitHeavyTail-package.Rd | 20 fitHeavyTail-0.2.0/fitHeavyTail/man/fit_Cauchy.Rd | 2 fitHeavyTail-0.2.0/fitHeavyTail/man/fit_Tyler.Rd | 7 fitHeavyTail-0.2.0/fitHeavyTail/man/fit_mvt.Rd | 56 fitHeavyTail-0.2.0/fitHeavyTail/man/nu_OPP_estimator.Rd |only fitHeavyTail-0.2.0/fitHeavyTail/man/nu_POP_estimator.Rd |only fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/fitted_Cauchy_check.RData |binary fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/fitted_Tyler_check.RData |binary fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/fitted_mvt_wNA_check.RData |binary fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/test-fit_Cauchy.R | 14 fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/test-fit_Tyler.R | 12 fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/test-fit_mvst.R | 9 fitHeavyTail-0.2.0/fitHeavyTail/tests/testthat/test-fit_mvt.R | 33 29 files changed, 1231 insertions(+), 582 deletions(-)
Title: Causal Inference with High-Dimensional Error-Prone Covariates
and Misclassified Treatments
Description: We aim to deal with the average treatment effect (ATE), where the data are
subject to high-dimensionality and measurement error. This package primarily contains two
functions, which are used to generate artificial data and estimate ATE with high-dimensional
and error-prone data accommodated.
Author: Wei-Hsin Hsu [aut, cre],
Li-Pang Chen [aut]
Maintainer: Wei-Hsin Hsu <anson60214@gmail.com>
Diff between CHEMIST versions 0.1.3 dated 2023-04-23 and 0.1.5 dated 2023-05-01
DESCRIPTION | 26 +++++++++--------------- MD5 | 12 +++++------ NAMESPACE | 1 R/Data_Gen.R | 59 ++++++++++++++++++++++++++++++++++++-------------------- R/FATE.R | 18 +++++++++-------- man/Data_Gen.Rd | 14 ++++++------- man/FATE.Rd | 12 +++++------ 7 files changed, 78 insertions(+), 64 deletions(-)
Title: Download R Cheat Sheets Locally
Description: A simple package to grab cheat sheets and save them to your local computer.
Author: Brad Lindblad [aut, cre],
Posit [cph]
Maintainer: Brad Lindblad <me@bradlindblad.com>
Diff between cheatsheet versions 0.1.1 dated 2023-01-29 and 0.1.2 dated 2023-05-01
DESCRIPTION | 6 +++--- MD5 | 13 +++++++------ NEWS.md | 2 ++ R/get_all_cheatsheets.R | 2 +- R/helpers.R | 2 +- README.md | 8 +++----- man/figures |only tests/testthat.R | 2 +- 8 files changed, 18 insertions(+), 17 deletions(-)
Title: Bayesian Additive Regression Trees for Confounder Selection
Description: Fit Bayesian Regression Additive Trees (BART) models to
select true confounders from a large set of potential confounders and
to estimate average treatment effect. For more information, see Kim et
al. (2023) <doi:10.1111/biom.13833>.
Author: Yeonghoon Yoo [aut, cre]
Maintainer: Yeonghoon Yoo <yooyh.stat@gmail.com>
Diff between bartcs versions 1.0.0 dated 2023-03-09 and 1.1.0 dated 2023-05-01
bartcs-1.0.0/bartcs/R/gelman_rubin.R |only bartcs-1.0.0/bartcs/man/gelman_rubin.Rd |only bartcs-1.1.0/bartcs/DESCRIPTION | 10 - bartcs-1.1.0/bartcs/MD5 | 46 ++--- bartcs-1.1.0/bartcs/NAMESPACE | 2 bartcs-1.1.0/bartcs/NEWS.md | 4 bartcs-1.1.0/bartcs/R/bart.R | 23 +- bartcs-1.1.0/bartcs/R/bartcs-package.R | 2 bartcs-1.1.0/bartcs/R/print.R | 10 - bartcs-1.1.0/bartcs/R/separate_bart.R | 42 +++-- bartcs-1.1.0/bartcs/R/single_bart.R | 40 ++-- bartcs-1.1.0/bartcs/R/summary.R | 26 +-- bartcs-1.1.0/bartcs/R/trace_plot.R | 4 bartcs-1.1.0/bartcs/R/utils.R | 14 - bartcs-1.1.0/bartcs/build/partial.rdb |binary bartcs-1.1.0/bartcs/build/vignette.rds |binary bartcs-1.1.0/bartcs/inst/doc/bartcs.R | 14 + bartcs-1.1.0/bartcs/inst/doc/bartcs.Rmd | 40 +++- bartcs-1.1.0/bartcs/inst/doc/bartcs.html | 226 ++++++++++++++------------- bartcs-1.1.0/bartcs/man/bart.Rd | 21 +- bartcs-1.1.0/bartcs/man/bartcs-package.Rd | 2 bartcs-1.1.0/bartcs/man/summary.bartcs.Rd | 6 bartcs-1.1.0/bartcs/vignettes/REFERENCES.bib | 104 +----------- bartcs-1.1.0/bartcs/vignettes/article.pdf |binary bartcs-1.1.0/bartcs/vignettes/bartcs.Rmd | 40 +++- 25 files changed, 318 insertions(+), 358 deletions(-)
Title: Read, Validate, Analyze, and Map GTFS Feeds
Description: Read General Transit Feed Specification (GTFS) zipfiles into a list of R dataframes. Perform validation of the data structure against the specification. Analyze the headways and frequencies at routes and stops. Create maps and perform spatial analysis on the routes and stops. Please see the GTFS documentation here for more detail: <https://gtfs.org/>.
Author: Flavio Poletti [aut, cre],
Daniel Herszenhut [aut] ,
Mark Padgham [aut],
Tom Buckley [aut],
Danton Noriega-Goodwin [aut],
Angela Li [ctb],
Elaine McVey [ctb],
Charles Hans Thompson [ctb],
Michael Sumner [ctb],
Patrick Hausmann [ctb],
Bob Rudis [ctb], [...truncated...]
Maintainer: Flavio Poletti <flavio.poletti@hotmail.ch>
Diff between tidytransit versions 1.5.0 dated 2023-03-10 and 1.5.1 dated 2023-05-01
DESCRIPTION | 8 MD5 | 14 R/validate_gtfs.R | 38 build/vignette.rds |binary inst/doc/frequency.html | 553 +++- inst/doc/introduction.html | 5388 ++++++++++++++++++++++++++++++++++++++++-- inst/doc/servicepatterns.html | 477 ++- inst/doc/timetable.html | 519 ++-- 8 files changed, 6463 insertions(+), 534 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98) and postbomb curves. Also provided are functions to copy the curves into memory, to plot the curves and their underlying data, to calibrate radiocarbon dates and to transform between different radiocarbon 'domains'.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 0.5.3 dated 2023-01-31 and 0.6.0 dated 2023-05-01
DESCRIPTION | 13 MD5 | 89 - NAMESPACE | 5 NEWS.md | 9 R/calc.R | 28 R/calibrate.R | 10 R/data.R | 38 R/plots.R | 253 +++- R/rintcal.R | 26 inst/doc/calculations.R | 3 inst/doc/calculations.Rmd | 5 inst/doc/calculations.html | 465 +++++-- inst/doc/intro.R | 2 inst/doc/intro.Rmd | 2 inst/doc/intro.html | 424 +++++-- inst/doc/plots.R | 5 inst/doc/plots.Rmd | 7 inst/doc/plots.html | 369 ++++-- inst/extdata/postbomb_NH1.14C | 140 +- inst/extdata/postbomb_NH1_2009.14C | 1204 ++++++++++---------- inst/extdata/postbomb_NH1_monthly.14C | 1878 ++++++++++++++++---------------- inst/extdata/postbomb_NH2.14C | 140 +- inst/extdata/postbomb_NH2_2009.14C | 1108 +++++++++--------- inst/extdata/postbomb_NH2_monthly.14C | 1878 ++++++++++++++++---------------- inst/extdata/postbomb_NH3.14C | 140 +- inst/extdata/postbomb_NH3_2009.14C | 990 ++++++++-------- inst/extdata/postbomb_NH3_monthly.14C | 1878 ++++++++++++++++---------------- inst/extdata/postbomb_SH1-2.14C | 140 +- inst/extdata/postbomb_SH1-2_2009.14C | 1300 +++++++++++----------- inst/extdata/postbomb_SH1-2_monthly.14C | 1872 +++++++++++++++---------------- inst/extdata/postbomb_SH3.14C | 140 +- inst/extdata/postbomb_SH3_2009.14C | 948 ++++++++-------- inst/extdata/postbomb_SH3_monthly.14C | 1872 +++++++++++++++---------------- man/F14C.age.Rd | 4 man/age.F14C.Rd | 4 man/age.pMC.Rd | 4 man/calibrate.Rd | 3 man/draw.ccurve.Rd | 8 man/draw.contamination.Rd |only man/draw.dates.Rd | 7 man/intcal.data.Rd | 11 man/mix.ccurves.Rd | 7 man/pMC.age.Rd | 4 vignettes/calculations.Rmd | 5 vignettes/intro.Rmd | 2 vignettes/plots.Rmd | 7 46 files changed, 9156 insertions(+), 8291 deletions(-)
Title: Additional Layout Algorithms for Network Visualizations
Description: Several new layout algorithms to visualize networks are provided which are not part of 'igraph'.
Most are based on the concept of stress majorization by Gansner et al. (2004) <doi:10.1007/978-3-540-31843-9_25>.
Some more specific algorithms allow the user to emphasize hidden group structures in networks or focus on specific nodes.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between graphlayouts versions 0.8.4 dated 2022-11-24 and 1.0.0 dated 2023-05-01
DESCRIPTION | 11 ++--- MD5 | 46 ++++++++++++--------- NEWS.md | 9 ++++ R/graph_manipulate.R | 2 R/layout_backbone.R | 3 + R/layout_dynamic.R | 10 +++- R/layout_large_graphs.R | 7 ++- R/layout_manipulate.R | 15 ++++--- R/layout_multilevel.R | 4 - R/layout_spectral.R | 3 + R/layout_stress.R | 2 README.md | 64 ++++++++++++++++++++++++------ build |only inst/CITATION | 20 ++++++--- inst/doc |only tests/testthat/test-layout_backbone.R |only tests/testthat/test-layout_dynamic.R | 2 tests/testthat/test-layout_large_graphs.R | 12 +++++ tests/testthat/test-layout_manipulate.R | 9 +++- tests/testthat/test-layout_multilevel.R | 23 ++++++++++ tests/testthat/test-layout_spectral.R | 4 + tests/testthat/test-layouts.R | 22 +++++----- tests/testthat/test-misc.R |only tests/testthat/test-stress_majorization.R | 39 ++++++++++++++---- vignettes |only 25 files changed, 229 insertions(+), 78 deletions(-)
Title: Covariate-Adaptive Randomization for Clinical Trials
Description: Provides functions and command-line user interface to generate allocation sequence by covariate-adaptive randomization for clinical trials. The package currently supports six covariate-adaptive randomization procedures. Three hypothesis testing methods that are valid and robust under covariate-adaptive randomization are also available in the package to facilitate the inference for treatment effect under the included randomization procedures. Additionally, the package provides comprehensive and efficient tools to allow one to evaluate and compare the performance of randomization procedures and tests based on various criteria.
Author: Fuyi Tu [aut],
Xiaoqing Ye [aut, cre],
Wei Ma [aut, ths],
Feifang Hu [aut, ths]
Maintainer: Xiaoqing Ye <ye_xiaoq@163.com>
Diff between carat versions 2.1.0 dated 2022-11-30 and 2.2.0 dated 2023-05-01
DESCRIPTION | 8 +- MD5 | 16 ++--- R/test_Rfunction.R | 4 + data/pats.rda |binary inst/NEWS.Rd | 6 ++ man/rand.test.Rd | 2 src/InnerFun.cpp | 142 +++++++++++++++++++++++++++++++++++++++++------------ src/Makevars | 1 src/Makevars.win | 1 9 files changed, 134 insertions(+), 46 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-08-06 0.2.0
2022-06-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-30 0.9.45
2018-09-11 0.9.44
2017-05-24 0.9.32
2016-07-11 0.9.30
2016-07-11 0.9.30.1
2016-02-11 0.9.21
2016-02-11 0.9.22
Title: Generalized Correlations, Causal Paths and Portfolio Selection
Description: Since causal paths from data are important for all sciences, the
package provides many sophisticated functions. causeSummBlk() and causeSum2Blk()
give easy-to-interpret causal paths. Let Z denote control variables and compare
two flipped kernel regressions: X=f(Y, Z)+e1 and Y=g(X,Z)+e2. Our criterion Cr1
says that if |e1*Y|>|e2*X| then variation in X is more "exogenous or independent"
than in Y and causal path is X to Y. Criterion Cr2 requires |e2|<|e1|. These
inequalities between many absolute values are quantified by four orders of
stochastic dominance. Our third criterion Cr3 for the causal path X to Y
requires new generalized partial correlations to satisfy |r*(x|y,z)|< |r*(y|x,z)|.
The function parcorVec() reports generalized partials between the first
variable and all others. The package provides several R functions including
get0outliers() for outlier detection, bigfp() for numerical integration by the
trapezoidal rule, stochdom2() for stochastic dominance, pillar3D() [...truncated...]
Author: Prof. H. D. Vinod, Fordham University, NY.
Maintainer: H. D. Vinod <vinod@fordham.edu>
Diff between generalCorr versions 1.2.2 dated 2022-01-03 and 1.2.3 dated 2023-05-01
DESCRIPTION | 13 +-- MD5 | 144 ++++++++++++++++++------------------- NAMESPACE | 1 NEWS | 9 +- R/GcRsqX12.R | 2 R/GcRsqX12c.R | 2 R/GcRsqYX.R | 2 R/GcRsqYXc.R | 2 R/absBstdresC.R | 2 R/absBstdrhserC.R | 2 R/allPairs.R | 2 R/bootGcLC.R | 2 R/bootGcRsq.R | 2 R/bootPair2.R | 2 R/bootPairs.R | 2 R/bootPairs0.R | 2 R/bootQuantile.R | 2 R/bootSign.R | 2 R/bootSignPcent.R | 2 R/bootSummary.R | 2 R/bootSummary2.R | 2 R/causeAllPair.R | 2 R/causeSum2Blk.R | 2 R/causeSum2Panel.R |only R/causeSumNoP.R | 2 R/causeSummBlk.R | 2 R/causeSummary.R | 2 R/causeSummary0.R | 2 R/causeSummary2.R | 2 R/depMeas.R | 2 R/generalCorrInfo.R | 2 R/gmcmtx0.R | 2 R/gmcmtxBlk.R | 2 R/gmcmtxZ.R | 2 R/gmcxy_np.R | 2 R/rstar.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/doc/generalCorr-vignette.pdf |binary inst/doc/generalCorr-vignette2.pdf |binary inst/doc/generalCorr-vignette3.pdf |binary inst/doc/generalCorr-vignette5.pdf |binary man/GcRsqX12.Rd | 2 man/GcRsqX12c.Rd | 2 man/GcRsqYX.Rd | 2 man/GcRsqYXc.Rd | 2 man/absBstdresC.Rd | 2 man/absBstdrhserC.Rd | 2 man/allPairs.Rd | 2 man/bootGcLC.Rd | 2 man/bootGcRsq.Rd | 2 man/bootPair2.Rd | 2 man/bootPairs.Rd | 2 man/bootPairs0.Rd | 2 man/bootQuantile.Rd | 2 man/bootSign.Rd | 2 man/bootSignPcent.Rd | 2 man/bootSummary.Rd | 2 man/bootSummary2.Rd | 2 man/causeAllPair.Rd | 2 man/causeSum2Blk.Rd | 2 man/causeSum2Panel.Rd |only man/causeSumNoP.Rd | 2 man/causeSummBlk.Rd | 2 man/causeSummary.Rd | 2 man/causeSummary0.Rd | 2 man/causeSummary2.Rd | 2 man/depMeas.Rd | 2 man/generalCorrInfo.Rd | 2 man/gmcmtx0.Rd | 2 man/gmcmtxBlk.Rd | 2 man/gmcmtxZ.Rd | 2 man/gmcxy_np.Rd | 2 man/rstar.Rd | 2 74 files changed, 148 insertions(+), 143 deletions(-)
Title: Experimental Design and Analysis for Tree Improvement
Description: Provides data sets and R Codes for E.R. Williams, C.E. Harwood and A.C. Matheson (2023). Experimental Design and Analysis for Tree Improvement, CSIRO Publishing.
Author: Muhammad Yaseen [aut, cre, cph]
,
Sami Ullah [aut, ctb],
Kent M. Eskridge [aut, ctb],
Emlyn Williams [aut, ctb]
Maintainer: Muhammad Yaseen <myaseen208@gmail.com>
Diff between eda4treeR versions 0.5.0 dated 2023-04-23 and 0.6.0 dated 2023-05-01
DESCRIPTION | 8 +- MD5 | 76 +++++++++++++-------------- NEWS.md | 5 + R/DataExam2.1.R | 62 +++++++++++----------- R/DataExam2.2.R | 8 +- R/DataExam3.1.1.R | 8 +- R/DataExam3.1.R | 8 +- R/DataExam4.3.1.R | 6 +- R/DataExam4.3.R | 6 +- R/DataExam4.4.R | 8 +- R/DataExam5.1.R | 6 +- R/DataExam5.2.R | 64 +++++++++++------------ R/DataExam6.2.R | 68 ++++++++++++------------ R/DataExam8.1.R | 18 +++--- R/DataExam8.2.R | 23 +++++--- R/Exam4.3.1.R | 2 R/Exam5.1.R | 136 ++++++++++++++++++++++++++++++++----------------- R/Exam5.2.R | 133 +++++++++++++++++++++++++++++------------------ R/Exam6.2.R | 17 +----- R/Exam8.1.R | 12 ++-- README.md | 29 ++++------ data/DataExam5.2.RData |binary man/DataExam2.1.Rd | 6 +- man/DataExam2.2.Rd | 6 +- man/DataExam3.1.1.Rd | 8 +- man/DataExam3.1.Rd | 8 +- man/DataExam4.3.1.Rd | 6 +- man/DataExam4.3.Rd | 6 +- man/DataExam4.4.Rd | 8 +- man/DataExam5.1.Rd | 6 +- man/DataExam5.2.Rd | 6 +- man/DataExam6.2.Rd | 6 +- man/DataExam8.1.Rd | 18 +++--- man/DataExam8.2.Rd | 23 +++++--- man/Exam4.3.1.Rd | 2 man/Exam5.1.Rd | 136 ++++++++++++++++++++++++++++++++----------------- man/Exam5.2.Rd | 132 +++++++++++++++++++++++++++++------------------ man/Exam6.2.Rd | 17 +----- man/Exam8.1.Rd | 12 ++-- 39 files changed, 628 insertions(+), 481 deletions(-)